BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12747
         (84 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5RCD7|SSRG_PONAB Translocon-associated protein subunit gamma OS=Pongo abelii GN=SSR3
           PE=2 SV=1
          Length = 185

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 1   MAKKLS--DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKS 58
           + +KLS  D++KMS+KEKDERILWKKNEVAD+EATTFSIFYNN LFL +VI  SF+ILK+
Sbjct: 100 VTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKN 159

Query: 59  FTPTFNYIFSLWISAGFLALLSTGTK 84
           F PT NYI S+  S+G +ALLSTG+K
Sbjct: 160 FNPTVNYILSISASSGLIALLSTGSK 185


>sp|Q9UNL2|SSRG_HUMAN Translocon-associated protein subunit gamma OS=Homo sapiens GN=SSR3
           PE=1 SV=1
          Length = 185

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 1   MAKKLS--DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKS 58
           + +KLS  D++KMS+KEKDERILWKKNEVAD+EATTFSIFYNN LFL +VI  SF+ILK+
Sbjct: 100 VTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKN 159

Query: 59  FTPTFNYIFSLWISAGFLALLSTGTK 84
           F PT NYI S+  S+G +ALLSTG+K
Sbjct: 160 FNPTVNYILSISASSGLIALLSTGSK 185


>sp|Q08013|SSRG_RAT Translocon-associated protein subunit gamma OS=Rattus norvegicus
           GN=Ssr3 PE=1 SV=2
          Length = 185

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 1   MAKKLS--DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKS 58
           + +KLS  D++KMS+KEKDERILWKKNEVAD+EATTFSIFYNN LFL +VI  SF+ILK+
Sbjct: 100 VTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKN 159

Query: 59  FTPTFNYIFSLWISAGFLALLSTGTK 84
           F PT NYI S+  S+G +ALLSTG+K
Sbjct: 160 FNPTVNYILSISASSGLIALLSTGSK 185


>sp|Q9DCF9|SSRG_MOUSE Translocon-associated protein subunit gamma OS=Mus musculus GN=Ssr3
           PE=1 SV=1
          Length = 185

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 1   MAKKLS--DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKS 58
           + +KLS  D++KMS+KEKDERILWKKNEVAD+EATTFSIFYNN LFL +VI  SF+ILK+
Sbjct: 100 VTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKN 159

Query: 59  FTPTFNYIFSLWISAGFLALLSTGTK 84
           F PT NYI S+  S+G +ALLSTG+K
Sbjct: 160 FNPTVNYILSISASSGLIALLSTGSK 185


>sp|Q3SZ87|SSRG_BOVIN Translocon-associated protein subunit gamma OS=Bos taurus GN=SSR3
           PE=2 SV=1
          Length = 185

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 1   MAKKLS--DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKS 58
           + +KLS  D++KMS+KEKDERILWKKNEVAD+EATTFSIFYNN LFL +VI  SF+ILK+
Sbjct: 100 VTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKN 159

Query: 59  FTPTFNYIFSLWISAGFLALLSTGTK 84
           F PT NYI S+  S+G +ALLSTG+K
Sbjct: 160 FNPTVNYILSISASSGLIALLSTGSK 185


>sp|Q55GT5|SSRG_DICDI Translocon-associated protein subunit gamma OS=Dictyostelium
           discoideum GN=ssr3 PE=3 SV=1
          Length = 170

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 4   KLSDDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPTF 63
           K+ D KK +  +K+ + L     V   EA   SI YNNA+FL  V   SF I K+    +
Sbjct: 94  KVGDKKKFAAAQKEVQAL-----VTSHEAIAASIMYNNAVFLICVSIFSFIIFKNVPLVY 148

Query: 64  NYIFSLWISAGFLALLSTGTK 84
           NYI S+ + AG  + LST +K
Sbjct: 149 NYIISISLGAGLTSFLSTSSK 169


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,912,331
Number of Sequences: 539616
Number of extensions: 930339
Number of successful extensions: 4529
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4516
Number of HSP's gapped (non-prelim): 18
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)