Query psy12747
Match_columns 84
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 18:38:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07074 TRAP-gamma: Transloco 100.0 8.7E-48 1.9E-52 282.1 5.7 82 1-82 89-170 (170)
2 KOG4490|consensus 100.0 1E-46 2.3E-51 277.7 4.1 84 1-84 100-183 (183)
3 PF11674 DUF3270: Protein of u 91.7 0.29 6.4E-06 33.1 3.7 45 38-82 42-87 (90)
4 TIGR02831 spo_II_M stage II sp 83.0 1.8 3.8E-05 31.7 3.5 69 9-78 33-109 (200)
5 PF15012 DUF4519: Domain of un 81.6 1 2.2E-05 28.5 1.6 43 3-49 2-45 (56)
6 PF12650 DUF3784: Domain of un 73.9 21 0.00045 22.9 6.1 60 6-79 24-90 (97)
7 COG5070 VRG4 Nucleotide-sugar 72.3 6.9 0.00015 31.7 4.2 39 19-62 175-213 (309)
8 PF07074 TRAP-gamma: Transloco 66.0 16 0.00035 27.4 4.8 45 36-80 19-63 (170)
9 PF12012 DUF3504: Domain of un 62.7 1.2 2.7E-05 31.3 -1.5 31 17-47 8-40 (172)
10 KOG3398|consensus 62.0 3.6 7.7E-05 30.1 0.7 27 7-33 83-109 (135)
11 KOG4490|consensus 57.7 28 0.0006 26.4 4.8 69 8-77 3-74 (183)
12 PF06570 DUF1129: Protein of u 55.7 28 0.00061 25.2 4.5 32 45-77 161-192 (206)
13 PRK13362 protoheme IX farnesyl 45.5 15 0.00033 28.5 1.9 65 8-75 75-157 (306)
14 PF06248 Zw10: Centromere/kine 43.8 11 0.00023 31.4 0.8 31 34-64 510-541 (593)
15 PF14268 YoaP: YoaP-like 43.1 8.1 0.00018 23.0 0.0 11 31-41 19-29 (44)
16 TIGR00267 conserved hypothetic 42.4 1E+02 0.0022 22.0 5.6 11 17-27 59-69 (169)
17 COG0833 LysP Amino acid transp 34.0 81 0.0017 27.5 4.6 19 62-80 399-417 (541)
18 PRK14550 rnhB ribonuclease HII 31.6 26 0.00056 26.2 1.1 16 5-20 37-52 (204)
19 PF00924 MS_channel: Mechanose 29.9 1.6E+02 0.0034 20.3 4.8 32 45-76 6-37 (206)
20 TIGR00764 lon_rel lon-related 28.6 1.3E+02 0.0027 25.8 4.9 39 39-79 109-147 (608)
21 PF03908 Sec20: Sec20; InterP 28.5 95 0.0021 19.8 3.3 15 44-58 77-91 (92)
22 cd07182 RNaseH_typeII_bacteria 28.4 65 0.0014 23.2 2.8 16 5-20 31-46 (179)
23 cd06590 RNaseH_typeII_bacteria 28.3 40 0.00086 24.6 1.6 31 5-36 35-65 (208)
24 PF04156 IncA: IncA protein; 28.1 97 0.0021 21.6 3.5 24 58-81 32-55 (191)
25 TIGR03063 srtB_target sortase 28.1 83 0.0018 17.4 2.5 18 42-59 11-28 (29)
26 KOG2927|consensus 28.0 48 0.001 27.8 2.2 45 30-77 183-230 (372)
27 PF03779 SPW: SPW repeat; Int 27.7 1.4E+02 0.0031 17.8 4.6 37 45-82 8-44 (51)
28 COG0164 RnhB Ribonuclease HII 27.5 35 0.00075 25.9 1.2 15 5-19 35-49 (199)
29 PRK13454 F0F1 ATP synthase sub 26.5 38 0.00081 24.3 1.2 8 59-66 53-60 (181)
30 PRK13925 rnhB ribonuclease HII 24.7 81 0.0017 23.4 2.7 15 5-19 45-59 (198)
31 COG0066 LeuD 3-isopropylmalate 24.1 31 0.00067 26.4 0.4 13 34-46 98-110 (191)
32 COG3135 BenE Uncharacterized p 23.6 1.3E+02 0.0028 25.5 4.0 34 45-78 162-195 (402)
33 PF01595 DUF21: Domain of unkn 23.2 1.8E+02 0.0039 19.5 4.0 52 28-79 50-102 (183)
34 PF13726 Na_H_antiport_2: Na+- 22.7 1.7E+02 0.0038 19.7 3.8 30 41-75 1-30 (88)
35 PF02508 Rnf-Nqr: Rnf-Nqr subu 22.4 1.4E+02 0.003 22.1 3.6 42 36-80 11-52 (190)
36 PF06692 MNSV_P7B: Melon necro 22.3 97 0.0021 20.0 2.4 23 42-64 15-37 (61)
37 PF01351 RNase_HII: Ribonuclea 22.0 61 0.0013 23.2 1.6 20 5-24 35-54 (198)
38 PF06570 DUF1129: Protein of u 21.5 2.4E+02 0.0051 20.4 4.6 12 35-46 79-90 (206)
39 cd06266 RNaseH_typeII Ribonucl 21.5 1E+02 0.0023 21.9 2.7 21 5-25 35-55 (193)
40 PF12240 Angiomotin_C: Angiomo 21.3 56 0.0012 25.3 1.4 20 13-32 66-85 (205)
41 PF13035 DUF3896: Protein of u 21.2 32 0.00069 22.1 0.0 21 8-32 27-47 (61)
42 smart00153 VHP Villin headpiec 20.4 60 0.0013 18.4 1.0 18 10-27 12-29 (36)
43 PRK12876 ubiA prenyltransferas 20.1 56 0.0012 25.8 1.2 66 8-76 75-155 (300)
44 PRK15087 hemolysin; Provisiona 20.1 54 0.0012 24.3 1.0 27 11-37 1-27 (219)
No 1
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=100.00 E-value=8.7e-48 Score=282.14 Aligned_cols=82 Identities=78% Similarity=1.204 Sum_probs=80.8
Q ss_pred CccccccccccchHHHHHHHHHHhhhhhcccceeeehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Q psy12747 1 MAKKLSDDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALLS 80 (84)
Q Consensus 1 ~~~~~~~dkKmskKekderil~kkneVad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~lS 80 (84)
||+|++|||||++||||||||||||||||||||+|||||||||||++++++|||+|||++|++||++|+++|||++||||
T Consensus 89 v~~k~~~dKK~~~kekderil~kkneVad~Ea~~~SifynNalFl~l~i~~SF~~lk~~~p~~Nyi~S~~~asgl~allS 168 (170)
T PF07074_consen 89 VNKKLADDKKMSKKEKDERILWKKNEVADYEATTFSIFYNNALFLALVIVFSFYLLKNFSPVFNYIFSMSGASGLVALLS 168 (170)
T ss_pred HHHhhccccccchHHHHHHHHHHhhhhhhhhheeeehhhhchHHHHHHHHHHHHHHccCCccceeeehHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy12747 81 TG 82 (84)
Q Consensus 81 T~ 82 (84)
||
T Consensus 169 Tg 170 (170)
T PF07074_consen 169 TG 170 (170)
T ss_pred CC
Confidence 98
No 2
>KOG4490|consensus
Probab=100.00 E-value=1e-46 Score=277.68 Aligned_cols=84 Identities=63% Similarity=1.023 Sum_probs=82.5
Q ss_pred CccccccccccchHHHHHHHHHHhhhhhcccceeeehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Q psy12747 1 MAKKLSDDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALLS 80 (84)
Q Consensus 1 ~~~~~~~dkKmskKekderil~kkneVad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~lS 80 (84)
|++|++|||||++||||||||||||||||||||+|||||||+|||+++|+.|||+++|+.|++||++|+++++|++|+||
T Consensus 100 v~rq~addkKmtrKEKdERiLwkKNEVADyEaTtfSiFYnNslyL~v~iv~sFFiLkN~~P~~Nyi~S~~~ssGlvallS 179 (183)
T KOG4490|consen 100 VSRQYADDKKMTRKEKDERILWKKNEVADYEATTFSIFYNNSLYLTVMIVSSFFILKNVAPVFNYIISTIGSSGLVALLS 179 (183)
T ss_pred HHHhhccccccchhhhhHHHHhhccccccccceEEEEEeccchHHHHHHHHHHHHHhccchhhhhhhhhcchhhHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy12747 81 TGTK 84 (84)
Q Consensus 81 T~~~ 84 (84)
||++
T Consensus 180 T~~~ 183 (183)
T KOG4490|consen 180 TAKN 183 (183)
T ss_pred hccC
Confidence 9986
No 3
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=91.73 E-value=0.29 Score=33.13 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcc-CCccchhhhHHHHHHHHHHHHhcc
Q psy12747 38 FYNNALFLAIVIFLSFYILKS-FTPTFNYIFSLWISAGFLALLSTG 82 (84)
Q Consensus 38 FYnNalFl~l~i~~SF~llk~-~~p~~NYi~S~~~aagl~a~lST~ 82 (84)
|-|=|+|-.+.+++||+++.- ++|.+-..++++++=|++...++|
T Consensus 42 F~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~~~~~ 87 (90)
T PF11674_consen 42 FANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQLVRKF 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 447789999999999988875 999999999999999999988876
No 4
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=83.03 E-value=1.8 Score=31.73 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=45.4
Q ss_pred cccchHHHHHHHH--------HHhhhhhcccceeeehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Q psy12747 9 KKMSKKEKDERIL--------WKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLAL 78 (84)
Q Consensus 9 kKmskKekderil--------~kkneVad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~ 78 (84)
+.|++.+++|-.- .++++..+.+..+.++|.||..++.++.++.. ..=+.+|.+..++.-+...|.+.-
T Consensus 33 ~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~f~~if~nn~~~~~li~~lGl-~~~Gip~i~~~l~~nGf~~Gf~v~ 109 (200)
T TIGR02831 33 NSMSIVQKNDLYFYLSNFFGQLSGGNSASYGDIFRQSLFNNIKYVGLMWILGL-SIIGLPIILILDFLKGFVVGFTVG 109 (200)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3566677766431 12445566678899999999999988877773 233566666666666666665543
No 5
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=81.57 E-value=1 Score=28.51 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=26.8
Q ss_pred cccc-cccccchHHHHHHHHHHhhhhhcccceeeehhhhhHHHHHHHH
Q psy12747 3 KKLS-DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVI 49 (84)
Q Consensus 3 ~~~~-~dkKmskKekderil~kkneVad~Eat~fSIFYnNalFl~l~i 49 (84)
+++- ..+|-|+|+|.|| |-|-.|.-.-.++|-.--..-++++|
T Consensus 2 RqLkg~~~KET~K~K~ER----k~~~~e~~~kv~tVVlP~l~~~~~~I 45 (56)
T PF15012_consen 2 RQLKGGKTKETRKQKKER----KKEMQEAQQKVFTVVLPTLAAVFLFI 45 (56)
T ss_pred CccCCCCccchHHHHHHH----HHHHHHHHHhheeEehhHHHHHHHHH
Confidence 4553 5778999999998 66666665555555544333333333
No 6
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=73.88 E-value=21 Score=22.89 Aligned_cols=60 Identities=28% Similarity=0.454 Sum_probs=30.1
Q ss_pred ccccccchHHH---HHHHHHHhhhhhcccceeeehhhhhHHHHHHHHHHHHHHhccCCccc----hhhhHHHHHHHHHHH
Q psy12747 6 SDDKKMSKKEK---DERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPTF----NYIFSLWISAGFLAL 78 (84)
Q Consensus 6 ~~dkKmskKek---deril~kkneVad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~~----NYi~S~~~aagl~a~ 78 (84)
+...-||++|| ||+-+-| +.-+.+++.-++++...++..+.|.+ ..++.++...+.+..
T Consensus 24 aGyntms~eEk~~~D~~~l~r--------------~~g~~~~~~~i~~li~~l~~~~~~~~~~~~~i~~~ii~~i~~~~~ 89 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKKKLCR--------------FMGKFMLIIGIILLIGGLLSFFQSNWLFIIAIIFFIIILIGFVIY 89 (97)
T ss_pred hhcccCCHHHHHHhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999 4443333 33444554444444444444445444 344444444444433
Q ss_pred H
Q psy12747 79 L 79 (84)
Q Consensus 79 l 79 (84)
+
T Consensus 90 i 90 (97)
T PF12650_consen 90 I 90 (97)
T ss_pred h
Confidence 3
No 7
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=72.27 E-value=6.9 Score=31.71 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=31.6
Q ss_pred HHHHHhhhhhcccceeeehhhhhHHHHHHHHHHHHHHhccCCcc
Q psy12747 19 RILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPT 62 (84)
Q Consensus 19 ril~kkneVad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~ 62 (84)
|+..|-+.-+|+|+ .||||.+=+-+++.+| +++..|+|.
T Consensus 175 rkri~ltNf~d~dt----mfYnNllslPiL~~~s-~~~edws~~ 213 (309)
T COG5070 175 RKRIKLTNFKDFDT----MFYNNLLSLPILLSFS-FLFEDWSPG 213 (309)
T ss_pred HHhhcccccchhhH----HHHhhhHHHHHHHHHH-HHhccCCcc
Confidence 44556667788886 5899999999999999 567888887
No 8
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=66.04 E-value=16 Score=27.42 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=36.3
Q ss_pred ehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Q psy12747 36 SIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALLS 80 (84)
Q Consensus 36 SIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~lS 80 (84)
-+||-||+.+.++=+--|.=....++.-|.+.=.+++++-+.+++
T Consensus 19 alfY~nA~ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~ 63 (170)
T PF07074_consen 19 ALFYGNALIVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLA 63 (170)
T ss_pred eehhhHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999887766666665555554
No 9
>PF12012 DUF3504: Domain of unknown function (DUF3504); InterPro: IPR021893 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
Probab=62.72 E-value=1.2 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.540 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhhcc--cceeeehhhhhHHHHHH
Q psy12747 17 DERILWKKNEVADF--EATTFSIFYNNALFLAI 47 (84)
Q Consensus 17 deril~kkneVad~--Eat~fSIFYnNalFl~l 47 (84)
||+.||..+.+..+ ++...++||.|..++.+
T Consensus 8 dEe~Lw~s~~Lg~~sP~~Ll~tv~f~n~k~F~l 40 (172)
T PF12012_consen 8 DEEKLWESGQLGADSPQGLLNTVFFYNTKYFCL 40 (172)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHhCeeEec
Confidence 78899999998876 55677899999887654
No 10
>KOG3398|consensus
Probab=62.03 E-value=3.6 Score=30.07 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.8
Q ss_pred cccccchHHHHHHHHHHhhhhhcccce
Q psy12747 7 DDKKMSKKEKDERILWKKNEVADFEAT 33 (84)
Q Consensus 7 ~dkKmskKekderil~kkneVad~Eat 33 (84)
-+|+||.|+---+|=.|-..|.|||+-
T Consensus 83 ~~KgmsqkDLA~kInekpqVv~dyEsG 109 (135)
T KOG3398|consen 83 AQKGMSQKDLAQKINEKPQVIQDYESG 109 (135)
T ss_pred HhccccHHHHHHHHccCchhhhhHhcc
Confidence 479999999999999999999999985
No 11
>KOG4490|consensus
Probab=57.74 E-value=28 Score=26.44 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHhhhhhcccceeeehhhhhHHHHHHHHHHHHHHhccCCccchhh---hHHHHHHHHHH
Q psy12747 8 DKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPTFNYI---FSLWISAGFLA 77 (84)
Q Consensus 8 dkKmskKekderil~kkneVad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~~NYi---~S~~~aagl~a 77 (84)
.||.+|++-||..|-. +=-+.--.-.=.+||-||+-+...=+--|+=..+...+--.+ +++.+++=++|
T Consensus 3 ~~k~~K~qsEEeLLLq-dfSrn~StKssalFygNAfIvSa~PiwLfwrih~Mdl~~S~vl~~l~t~~stYL~a 74 (183)
T KOG4490|consen 3 PKKLTKQQSEEELLLQ-DFSRNSSTKSSALFYGNAFIVSAAPIWLFWRIHQMDLQDSLVLWGLSTVGSTYLLA 74 (183)
T ss_pred CccccccccHHHHHHH-HhhcccccccchhhhhhhHHHhhhhHHHhhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 4788888877755532 111111122335799999988888777777777766554444 44444444444
No 12
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=55.68 E-value=28 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Q psy12747 45 LAIVIFLSFYILKSFTPTFNYIFSLWISAGFLA 77 (84)
Q Consensus 45 l~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a 77 (84)
++++.+.++ +-+.+.|+.+....+++++.+.+
T Consensus 161 ~~~~~~~~~-lp~~inp~l~~~~~iiig~i~~~ 192 (206)
T PF06570_consen 161 IVIFVLTSF-LPPVINPVLPPWVYIIIGVIAFA 192 (206)
T ss_pred HHHHHHHHH-ccccCCcCCCHHHHHHHHHHHHH
Confidence 334444444 56666777777777776665544
No 13
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=45.53 E-value=15 Score=28.49 Aligned_cols=65 Identities=25% Similarity=0.227 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHHhhhhhcccceeeeh-----------hhhhHHHHHHHHH-----HHHH--HhccCCccchhhhHH
Q psy12747 8 DKKMSKKEKDERILWKKNEVADFEATTFSI-----------FYNNALFLAIVIF-----LSFY--ILKSFTPTFNYIFSL 69 (84)
Q Consensus 8 dkKmskKekderil~kkneVad~Eat~fSI-----------FYnNalFl~l~i~-----~SF~--llk~~~p~~NYi~S~ 69 (84)
|++|.|+ .+|-+- ++++...|+..+++ +.-|.+-..+.++ .-.| .+|+.++.-|.+++.
T Consensus 75 D~~~~Rt--~~RPlp-sG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~ 151 (306)
T PRK13362 75 DAKMQRT--RNRVTV-TGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSL 151 (306)
T ss_pred CCCCCCC--CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHH
Confidence 6777764 234554 47788888877765 2346443222211 1123 599999999998888
Q ss_pred HHHHHH
Q psy12747 70 WISAGF 75 (84)
Q Consensus 70 ~~aagl 75 (84)
.++...
T Consensus 152 ~ga~p~ 157 (306)
T PRK13362 152 SGAMPP 157 (306)
T ss_pred HHHHHH
Confidence 776443
No 14
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=43.81 E-value=11 Score=31.38 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=19.8
Q ss_pred eeehhhhhHHHHH-HHHHHHHHHhccCCccch
Q psy12747 34 TFSIFYNNALFLA-IVIFLSFYILKSFTPTFN 64 (84)
Q Consensus 34 ~fSIFYnNalFl~-l~i~~SF~llk~~~p~~N 64 (84)
.-.+|||||.||+ -++-.++-.-..+++...
T Consensus 510 ~aalf~NdC~ylah~l~~l~~~~~~~~~~~~~ 541 (593)
T PF06248_consen 510 QAALFHNDCMYLAHHLLTLGHEYRSKLPSPLK 541 (593)
T ss_pred HHHhHhcchHHHHHHHHHhHHHHhhcCcchhh
Confidence 3459999999998 344455544444555443
No 15
>PF14268 YoaP: YoaP-like
Probab=43.14 E-value=8.1 Score=23.04 Aligned_cols=11 Identities=45% Similarity=0.914 Sum_probs=8.8
Q ss_pred cceeeehhhhh
Q psy12747 31 EATTFSIFYNN 41 (84)
Q Consensus 31 Eat~fSIFYnN 41 (84)
=.|+||+|||.
T Consensus 19 pft~yalFYnG 29 (44)
T PF14268_consen 19 PFTTYALFYNG 29 (44)
T ss_pred ceeEEEEEECC
Confidence 35899999984
No 16
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=42.36 E-value=1e+02 Score=22.00 Aligned_cols=11 Identities=18% Similarity=0.027 Sum_probs=5.1
Q ss_pred HHHHHHHhhhh
Q psy12747 17 DERILWKKNEV 27 (84)
Q Consensus 17 deril~kkneV 27 (84)
+||--|.|++.
T Consensus 59 ~e~~ele~~~~ 69 (169)
T TIGR00267 59 REMRELEKSML 69 (169)
T ss_pred HHHHHHHHHHH
Confidence 34444455544
No 17
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=33.95 E-value=81 Score=27.48 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=18.0
Q ss_pred cchhhhHHHHHHHHHHHHh
Q psy12747 62 TFNYIFSLWISAGFLALLS 80 (84)
Q Consensus 62 ~~NYi~S~~~aagl~a~lS 80 (84)
+||+++++.+.+|+.+|++
T Consensus 399 vf~wL~~isg~s~~i~W~~ 417 (541)
T COG0833 399 VFNWLLNISGLSGFIAWGS 417 (541)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999986
No 18
>PRK14550 rnhB ribonuclease HII; Provisional
Probab=31.58 E-value=26 Score=26.22 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=13.5
Q ss_pred cccccccchHHHHHHH
Q psy12747 5 LSDDKKMSKKEKDERI 20 (84)
Q Consensus 5 ~~~dkKmskKekderi 20 (84)
+.|.||+|.|+|++..
T Consensus 37 v~DSKkLs~~~Re~L~ 52 (204)
T PRK14550 37 LKDSKKLSPKKRFFLE 52 (204)
T ss_pred ccChhhCCHHHHHHHH
Confidence 5899999999998743
No 19
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=29.90 E-value=1.6e+02 Score=20.27 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Q psy12747 45 LAIVIFLSFYILKSFTPTFNYIFSLWISAGFL 76 (84)
Q Consensus 45 l~l~i~~SF~llk~~~p~~NYi~S~~~aagl~ 76 (84)
+.+.++..+.++..+......++...++.|+.
T Consensus 6 ~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~ 37 (206)
T PF00924_consen 6 IVIIIVGILIILSILGIDVSSLLASLGVLGLA 37 (206)
T ss_dssp HHHHHHHHHHHHHCCT--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33444444455555554455555555554443
No 20
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=28.56 E-value=1.3e+02 Score=25.80 Aligned_cols=39 Identities=38% Similarity=0.611 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Q psy12747 39 YNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALL 79 (84)
Q Consensus 39 YnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~l 79 (84)
-|..+++++.++...+++.+++| ++++.-+.|++++-++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 147 (608)
T TIGR00764 109 RNLLLFMIGFIVLSEYFLKNLPP--NYLLAAVIAAALILLI 147 (608)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHH
Confidence 35555666666667777788877 6677777777776553
No 21
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=28.53 E-value=95 Score=19.79 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhcc
Q psy12747 44 FLAIVIFLSFYILKS 58 (84)
Q Consensus 44 Fl~l~i~~SF~llk~ 58 (84)
|++.+.++.|+++|.
T Consensus 77 ~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 77 FLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHhhhc
Confidence 556666667777665
No 22
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like. Bacterial ribonuclease (RNase) HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII- double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.
Probab=28.41 E-value=65 Score=23.24 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=13.4
Q ss_pred cccccccchHHHHHHH
Q psy12747 5 LSDDKKMSKKEKDERI 20 (84)
Q Consensus 5 ~~~dkKmskKekderi 20 (84)
+.|.|+||.++|+|..
T Consensus 31 v~DSK~Ls~~~R~~l~ 46 (179)
T cd07182 31 LNDSKKLSEKKREELY 46 (179)
T ss_pred CCCcccCCHHHHHHHH
Confidence 5799999999997754
No 23
>cd06590 RNaseH_typeII_bacteria_HIII_like bacterial Ribonuclease HIII-like. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gen
Probab=28.30 E-value=40 Score=24.57 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=19.7
Q ss_pred cccccccchHHHHHHHHHHhhhhhcccceeee
Q psy12747 5 LSDDKKMSKKEKDERILWKKNEVADFEATTFS 36 (84)
Q Consensus 5 ~~~dkKmskKekderil~kkneVad~Eat~fS 36 (84)
+.|.|++|.|+|++..-.-++ ..++.-...+
T Consensus 35 v~DSK~Ls~~~r~~l~~~I~~-~~~~~v~~i~ 65 (208)
T cd06590 35 VKDSKKLTDKKIIRLAPKIKK-KIPYSVLSLG 65 (208)
T ss_pred CCcCCcCCHHHHHHHHHHHHh-cCCEEEEecC
Confidence 579999999999886544333 2334443333
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.09 E-value=97 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.240 Sum_probs=12.6
Q ss_pred cCCccchhhhHHHHHHHHHHHHhc
Q psy12747 58 SFTPTFNYIFSLWISAGFLALLST 81 (84)
Q Consensus 58 ~~~p~~NYi~S~~~aagl~a~lST 81 (84)
+++|.+..++++++-|.-+.+++-
T Consensus 32 ~l~~~~s~~lg~~~lAlg~vL~~~ 55 (191)
T PF04156_consen 32 GLGALISFILGIALLALGVVLLSL 55 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666655555433444443
No 25
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=28.07 E-value=83 Score=17.41 Aligned_cols=18 Identities=6% Similarity=0.364 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy12747 42 ALFLAIVIFLSFYILKSF 59 (84)
Q Consensus 42 alFl~l~i~~SF~llk~~ 59 (84)
.+|.++++.+.+|+++..
T Consensus 11 ~ly~~l~~~s~~~Li~k~ 28 (29)
T TIGR03063 11 GLYAVLFLGSGLFLIRKR 28 (29)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 367777777667776653
No 26
>KOG2927|consensus
Probab=28.05 E-value=48 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=28.3
Q ss_pred ccceeeehhhhhHHHHHHHHHHHHHHhccCCccc---hhhhHHHHHHHHHH
Q psy12747 30 FEATTFSIFYNNALFLAIVIFLSFYILKSFTPTF---NYIFSLWISAGFLA 77 (84)
Q Consensus 30 ~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~~---NYi~S~~~aagl~a 77 (84)
||.+.+=-+- ...++.++.++-.+|+=|++.. =|..|+ ++.|++|
T Consensus 183 yep~~~~~~v--l~~~fvl~tlaivLFPLWP~~mR~gvyY~si-g~~gfl~ 230 (372)
T KOG2927|consen 183 YEPRPLMWQV--LGVLFVLVTLAIVLFPLWPRRMRQGVYYLSI-GAGGFLA 230 (372)
T ss_pred ccCCchhHHH--HHHHHHHHHHHHHhcccCcHHHhcceeeeec-chhHHHH
Confidence 5555543222 3334466667778999888743 477777 7777777
No 27
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=27.66 E-value=1.4e+02 Score=17.78 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhcc
Q psy12747 45 LAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALLSTG 82 (84)
Q Consensus 45 l~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~lST~ 82 (84)
+.+.++.|=+++ ++++.-+...+-++...+++.|+.+
T Consensus 8 lGlwli~SPWvl-gf~~~~~~~~~~vi~G~~v~~la~~ 44 (51)
T PF03779_consen 8 LGLWLIVSPWVL-GFSATAAAAWNNVIVGILVALLALW 44 (51)
T ss_pred HHHHHHHhHHHc-ccCCchhHHHHHHHHHHHHHHHHHH
Confidence 445555565666 7888888888888888888877753
No 28
>COG0164 RnhB Ribonuclease HII [DNA replication, recombination, and repair]
Probab=27.46 E-value=35 Score=25.93 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=13.0
Q ss_pred cccccccchHHHHHH
Q psy12747 5 LSDDKKMSKKEKDER 19 (84)
Q Consensus 5 ~~~dkKmskKekder 19 (84)
+.|.||+|+|.|+|.
T Consensus 35 l~DSKkLs~~kRe~L 49 (199)
T COG0164 35 LKDSKKLSPKKREEL 49 (199)
T ss_pred ccccccCCHHHHHHH
Confidence 579999999999764
No 29
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=26.53 E-value=38 Score=24.35 Aligned_cols=8 Identities=0% Similarity=-0.131 Sum_probs=3.9
Q ss_pred CCccchhh
Q psy12747 59 FTPTFNYI 66 (84)
Q Consensus 59 ~~p~~NYi 66 (84)
|+|+-+++
T Consensus 53 ~~PI~~~l 60 (181)
T PRK13454 53 LPRIGAVL 60 (181)
T ss_pred HHHHHHHH
Confidence 34655543
No 30
>PRK13925 rnhB ribonuclease HII; Provisional
Probab=24.69 E-value=81 Score=23.37 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=13.0
Q ss_pred cccccccchHHHHHH
Q psy12747 5 LSDDKKMSKKEKDER 19 (84)
Q Consensus 5 ~~~dkKmskKekder 19 (84)
+.|.||+|.++|+|.
T Consensus 45 v~DSK~Ls~~~Re~l 59 (198)
T PRK13925 45 LTDSKKLSPKRRAQL 59 (198)
T ss_pred CCCcccCCHHHHHHH
Confidence 579999999999874
No 31
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=24.12 E-value=31 Score=26.36 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=9.3
Q ss_pred eeehhhhhHHHHH
Q psy12747 34 TFSIFYNNALFLA 46 (84)
Q Consensus 34 ~fSIFYnNalFl~ 46 (84)
+--|||+||+=.-
T Consensus 98 FAdIFy~Na~nnG 110 (191)
T COG0066 98 FADIFYRNAINNG 110 (191)
T ss_pred HHHHHhhhhhhcC
Confidence 4459999997544
No 32
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.61 E-value=1.3e+02 Score=25.53 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Q psy12747 45 LAIVIFLSFYILKSFTPTFNYIFSLWISAGFLAL 78 (84)
Q Consensus 45 l~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~ 78 (84)
+.+-++.+|++.|.++|.+--+.-+++...+.++
T Consensus 162 l~lpmv~~~ll~r~f~pr~aV~aalvvgv~va~~ 195 (402)
T COG3135 162 LVLPMVLAYLLARVFAPRYAVIAALVVGVLVAAL 195 (402)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 5667888999999999999766666555444443
No 33
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=23.19 E-value=1.8e+02 Score=19.51 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=29.4
Q ss_pred hcccceeeehhhhhHHHHHHHHHHHHHHhccCCcc-chhhhHHHHHHHHHHHH
Q psy12747 28 ADFEATTFSIFYNNALFLAIVIFLSFYILKSFTPT-FNYIFSLWISAGFLALL 79 (84)
Q Consensus 28 ad~Eat~fSIFYnNalFl~l~i~~SF~llk~~~p~-~NYi~S~~~aagl~a~l 79 (84)
.+-|-+..++-+-|.+...+..++.-+++.++.+. ....+..++.+.++-++
T Consensus 50 ~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~lif 102 (183)
T PF01595_consen 50 ERPERLLSTILLGNTLSNVLAGVLATVLASNLFGPWWALLIAFLIITLLILIF 102 (183)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34455555666667666666665555555544433 55666666655555443
No 34
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=22.69 E-value=1.7e+02 Score=19.74 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Q psy12747 41 NALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGF 75 (84)
Q Consensus 41 NalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl 75 (84)
|++.+++++.+..-++| +|-++|+++|+=+
T Consensus 1 N~VviaV~vm~~L~LlR-----~nVvlalliaalv 30 (88)
T PF13726_consen 1 NPVVIAVLVMIVLSLLR-----VNVVLALLIAALV 30 (88)
T ss_pred CchhHHHHHHHHHHHHH-----hhHHHHHHHHHHH
Confidence 66677777766666777 6888888876533
No 35
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=22.37 E-value=1.4e+02 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=28.5
Q ss_pred ehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Q psy12747 36 SIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALLS 80 (84)
Q Consensus 36 SIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~lS 80 (84)
++|.||.+|.-.+-.|++.- .+-...-.+.|++|..++-.+|
T Consensus 11 ~i~~~N~vl~~~LGlcp~l~---vs~~~~~a~~mGlav~~V~~~s 52 (190)
T PF02508_consen 11 AIFVNNPVLVQFLGLCPFLA---VSTSLENALGMGLAVTFVLTLS 52 (190)
T ss_pred HHHHhHHHHHHHHHhcchhh---hcccHHHHHHHHHHHHHHHHHH
Confidence 58899999999998888654 3333344555666666655554
No 36
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=22.25 E-value=97 Score=19.96 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhccCCccch
Q psy12747 42 ALFLAIVIFLSFYILKSFTPTFN 64 (84)
Q Consensus 42 alFl~l~i~~SF~llk~~~p~~N 64 (84)
.++|+|+|-+-|++.-.++|+-|
T Consensus 15 ~~lLiliis~~f~lI~~l~qq~~ 37 (61)
T PF06692_consen 15 GPLLILIISFVFFLITSLGQQGN 37 (61)
T ss_pred hHHHHHHHHHHHHHHhhhccCCC
Confidence 36778888888888888888765
No 37
>PF01351 RNase_HII: Ribonuclease HII; InterPro: IPR024567 Ribonuclease HII and HIII are endonucleases that specifically degrade the RNA of RNA-DNA hybrids. Proteins which belong to this family have been found in bacteria, archaea, and eukaryota. The domain represented by this entry is found in ribonucleases HII aand HIII.; PDB: 2ETJ_A 3O3H_A 3O3G_A 3O3F_A 3KIO_A 3P5J_A 1UAX_B 2DFF_A 1IO2_A 2DFH_A ....
Probab=22.02 E-value=61 Score=23.15 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=13.9
Q ss_pred cccccccchHHHHHHHHHHh
Q psy12747 5 LSDDKKMSKKEKDERILWKK 24 (84)
Q Consensus 5 ~~~dkKmskKekderil~kk 24 (84)
+.|.|++|.+++++..-.=+
T Consensus 35 v~DSK~Ls~~~r~~l~~~I~ 54 (198)
T PF01351_consen 35 VKDSKKLSDKKREELAEKIK 54 (198)
T ss_dssp GCCGTTS-HHHHHHHHHHHH
T ss_pred cCccccCCHHHHHHHHHHHH
Confidence 57999999999977543333
No 38
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.47 E-value=2.4e+02 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.9
Q ss_pred eehhhhhHHHHH
Q psy12747 35 FSIFYNNALFLA 46 (84)
Q Consensus 35 fSIFYnNalFl~ 46 (84)
.-.+.-|+++++
T Consensus 79 ~~~~ld~~L~~~ 90 (206)
T PF06570_consen 79 WLMALDNSLLFF 90 (206)
T ss_pred HHHHHHHHHHHH
Confidence 344555655443
No 39
>cd06266 RNaseH_typeII Ribonuclease H type II. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genome contained the combination of only RNase HI and HIII. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escheri
Probab=21.46 E-value=1e+02 Score=21.93 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=16.2
Q ss_pred cccccccchHHHHHHHHHHhh
Q psy12747 5 LSDDKKMSKKEKDERILWKKN 25 (84)
Q Consensus 5 ~~~dkKmskKekderil~kkn 25 (84)
+.|.|+||.++|++..-.=++
T Consensus 35 v~DSK~Lt~~~r~~l~~~I~~ 55 (193)
T cd06266 35 VKDSKKLSEKKREELFEEIKE 55 (193)
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 589999999999886544444
No 40
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.32 E-value=56 Score=25.25 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhhhhcccc
Q psy12747 13 KKEKDERILWKKNEVADFEA 32 (84)
Q Consensus 13 kKekderil~kkneVad~Ea 32 (84)
-.|||||||--..|++-.|-
T Consensus 66 LrEkEErILaLEad~~kWEq 85 (205)
T PF12240_consen 66 LREKEERILALEADMTKWEQ 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999998887664
No 41
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=21.22 E-value=32 Score=22.09 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.4
Q ss_pred ccccchHHHHHHHHHHhhhhhcccc
Q psy12747 8 DKKMSKKEKDERILWKKNEVADFEA 32 (84)
Q Consensus 8 dkKmskKekderil~kkneVad~Ea 32 (84)
+-++|+|||+.. +-|+.+||-
T Consensus 27 ~~~ls~~er~qi----~~eidnyey 47 (61)
T PF13035_consen 27 SMHLSEKEREQI----KLEIDNYEY 47 (61)
T ss_pred hcccCHHHHHHH----HhhhhhHHH
Confidence 567888888765 667777773
No 42
>smart00153 VHP Villin headpiece domain.
Probab=20.38 E-value=60 Score=18.37 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHHhhhh
Q psy12747 10 KMSKKEKDERILWKKNEV 27 (84)
Q Consensus 10 KmskKekderil~kkneV 27 (84)
.|||.|=+..-.||+++.
T Consensus 12 gmsr~eF~~LP~WKq~~l 29 (36)
T smart00153 12 GMTREEFYKLPLWKQNQL 29 (36)
T ss_pred CCCHHHHHhCcHhhHHHH
Confidence 589999888889998865
No 43
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=20.13 E-value=56 Score=25.84 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHHhhhhhcccceeeeh----------hhhhHH-----HHHHHHHHHHHHhccCCccchhhhHHHHH
Q psy12747 8 DKKMSKKEKDERILWKKNEVADFEATTFSI----------FYNNAL-----FLAIVIFLSFYILKSFTPTFNYIFSLWIS 72 (84)
Q Consensus 8 dkKmskKekderil~kkneVad~Eat~fSI----------FYnNal-----Fl~l~i~~SF~llk~~~p~~NYi~S~~~a 72 (84)
|++|.|- .+|-+- +++|.-.|+..+++ +.-|-+ ++.+++....=.+|++++..|.++.+..+
T Consensus 75 D~~~~RT--~~RPLp-sG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~ 151 (300)
T PRK12876 75 DKKNPRT--SSRVLP-AKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYY 151 (300)
T ss_pred cCCCCCC--CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHH
Confidence 5555542 234444 37788888887775 223322 11112222222479999999988777666
Q ss_pred HHHH
Q psy12747 73 AGFL 76 (84)
Q Consensus 73 agl~ 76 (84)
.|.+
T Consensus 152 ~~~l 155 (300)
T PRK12876 152 LAIL 155 (300)
T ss_pred HHHH
Confidence 6543
No 44
>PRK15087 hemolysin; Provisional
Probab=20.07 E-value=54 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHHhhhhhcccceeeeh
Q psy12747 11 MSKKEKDERILWKKNEVADFEATTFSI 37 (84)
Q Consensus 11 mskKekderil~kkneVad~Eat~fSI 37 (84)
|-.|.+++|...+.||.++-=+=..++
T Consensus 1 ~~~~~~~~~~~~~~eE~~N~~tH~ig~ 27 (219)
T PRK15087 1 MVQKPLITQGYSLAEEIANSISHGIGL 27 (219)
T ss_pred CCCCCCCCCCcccchhHHHHHHHHHHH
Confidence 345666777777888887754433333
Done!