Query psy12747
Match_columns 84
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 18:38:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3he5_B Synzip2; heterodimeric 41.0 13 0.00045 22.1 1.6 8 24-31 44-51 (52)
2 2vv5_A MSCS, small-conductance 30.3 1.1E+02 0.0038 22.0 5.4 44 36-79 66-109 (286)
3 3udc_A Small-conductance mecha 28.1 58 0.002 23.4 3.6 44 34-77 63-106 (285)
4 1i39_A Ribonuclease HII, RNAse 27.6 23 0.0008 25.7 1.4 16 4-19 54-69 (225)
5 4a2n_B Isoprenylcysteine carbo 27.5 54 0.0018 22.6 3.2 20 40-59 46-65 (194)
6 1io2_A Ribonuclease HII; endon 26.8 24 0.00083 25.1 1.4 16 4-19 37-52 (213)
7 1uax_A Ribonuclease HII, ribon 26.1 25 0.00087 25.2 1.4 16 4-19 37-52 (220)
8 1eke_A Ribonuclease HII; endon 25.0 25 0.00087 25.2 1.2 16 4-19 37-52 (230)
9 2pbi_A Regulator of G-protein 23.6 23 0.00079 28.0 0.8 21 5-25 168-193 (424)
10 1wy3_A Villin; structural prot 23.4 31 0.0011 18.8 1.1 18 10-27 11-28 (35)
11 3vn5_A RNAse HIII, ribonucleas 21.4 36 0.0012 25.2 1.4 16 4-19 107-122 (257)
12 1und_A Advillin, P92; actin bi 21.2 37 0.0013 18.7 1.1 18 10-27 13-30 (37)
No 1
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.95 E-value=13 Score=22.15 Aligned_cols=8 Identities=63% Similarity=0.767 Sum_probs=2.9
Q ss_pred hhhhhccc
Q psy12747 24 KNEVADFE 31 (84)
Q Consensus 24 kneVad~E 31 (84)
.||||.+|
T Consensus 44 enevashe 51 (52)
T 3he5_B 44 ENEVASHE 51 (52)
T ss_dssp HHHHC---
T ss_pred HHHHhhcc
Confidence 45666655
No 2
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.25 E-value=1.1e+02 Score=21.98 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=29.5
Q ss_pred ehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Q psy12747 36 SIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALL 79 (84)
Q Consensus 36 SIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a~l 79 (84)
.-+..+.+..+++++..+.++..+.....-++...+++|+.--|
T Consensus 66 ~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~ 109 (286)
T 2vv5_A 66 ADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 109 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34567888888877777788877776555566666666654433
No 3
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=28.11 E-value=58 Score=23.40 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=29.4
Q ss_pred eeehhhhhHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Q psy12747 34 TFSIFYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLA 77 (84)
Q Consensus 34 ~fSIFYnNalFl~l~i~~SF~llk~~~p~~NYi~S~~~aagl~a 77 (84)
++.-+..+.+..++.++....++..+.....-++...|++|+.-
T Consensus 63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~ai 106 (285)
T 3udc_A 63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAI 106 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 44556778888888888888888777665555555555555443
No 4
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=27.60 E-value=23 Score=25.66 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.5
Q ss_pred ccccccccchHHHHHH
Q psy12747 4 KLSDDKKMSKKEKDER 19 (84)
Q Consensus 4 ~~~~dkKmskKekder 19 (84)
.+.|.||+|.|+|++.
T Consensus 54 gv~DSKkLs~~kRe~L 69 (225)
T 1i39_A 54 GVKDSKKLSQGRREEL 69 (225)
T ss_dssp TCTTCTTCCHHHHHHH
T ss_pred CCCcCCcCCHHHHHHH
Confidence 3689999999999874
No 5
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=27.52 E-value=54 Score=22.64 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q psy12747 40 NNALFLAIVIFLSFYILKSF 59 (84)
Q Consensus 40 nNalFl~l~i~~SF~llk~~ 59 (84)
-++.|+.++++..+.+..+|
T Consensus 46 ~~~~~~~~~i~~~l~~~~~~ 65 (194)
T 4a2n_B 46 VFLNFIGMVFLPLTAVFSSY 65 (194)
T ss_dssp HHHHHHHHTHHHHHHHSCSG
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45566777788887777666
No 6
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=26.77 E-value=24 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.7
Q ss_pred ccccccccchHHHHHH
Q psy12747 4 KLSDDKKMSKKEKDER 19 (84)
Q Consensus 4 ~~~~dkKmskKekder 19 (84)
.+.|.||+|.++|++.
T Consensus 37 gv~DSK~Ls~~~Re~L 52 (213)
T 1io2_A 37 KVRDSKKLTPKRREKL 52 (213)
T ss_dssp TGGGCTTCCHHHHHHH
T ss_pred CCCCcccCCHHHHHHH
Confidence 3689999999999874
No 7
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=26.12 E-value=25 Score=25.21 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=13.6
Q ss_pred ccccccccchHHHHHH
Q psy12747 4 KLSDDKKMSKKEKDER 19 (84)
Q Consensus 4 ~~~~dkKmskKekder 19 (84)
.+.|.||+|.|+|++.
T Consensus 37 gl~DSK~Ls~~~Re~L 52 (220)
T 1uax_A 37 GVKDSKQLTPGQREKL 52 (220)
T ss_dssp TGGGSTTSCHHHHHHH
T ss_pred CCCCcccCCHHHHHHH
Confidence 3689999999999874
No 8
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=25.02 E-value=25 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=10.7
Q ss_pred ccccccccchHHHHHH
Q psy12747 4 KLSDDKKMSKKEKDER 19 (84)
Q Consensus 4 ~~~~dkKmskKekder 19 (84)
.+.|.||+|.++|++.
T Consensus 37 gv~DSK~Ls~~~Re~L 52 (230)
T 1eke_A 37 GVKDSKELTKNKRAYL 52 (230)
T ss_dssp TCC---CCCHHHHHHH
T ss_pred CCCCcccCCHHHHHHH
Confidence 4689999999999874
No 9
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=23.65 E-value=23 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=16.8
Q ss_pred cccccccchHHH-----HHHHHHHhh
Q psy12747 5 LSDDKKMSKKEK-----DERILWKKN 25 (84)
Q Consensus 5 ~~~dkKmskKek-----deril~kkn 25 (84)
+.-+||..|-|| +||+.|+=+
T Consensus 168 ~~~~k~r~k~~r~v~~~qe~a~w~vh 193 (424)
T 2pbi_A 168 YRTGKERNKADRYALDCQEKAYWLVH 193 (424)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhccchhhhhhhhhhhhhhhhhh
Confidence 345788889898 899999854
No 10
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=23.35 E-value=31 Score=18.76 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHhhhh
Q psy12747 10 KMSKKEKDERILWKKNEV 27 (84)
Q Consensus 10 KmskKekderil~kkneV 27 (84)
.|||.|=+..-.||+++.
T Consensus 11 gmsr~eF~~LP~WKq~~l 28 (35)
T 1wy3_A 11 GMTRSAFANLPLWLQQHL 28 (35)
T ss_dssp SSCHHHHHHSCHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHH
Confidence 588988888889999875
No 11
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=21.37 E-value=36 Score=25.24 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred ccccccccchHHHHHH
Q psy12747 4 KLSDDKKMSKKEKDER 19 (84)
Q Consensus 4 ~~~~dkKmskKekder 19 (84)
.+.|.||+|.++|++.
T Consensus 107 gv~DSKkLs~~kRe~L 122 (257)
T 3vn5_A 107 NPRDTKRLSDKRVERL 122 (257)
T ss_dssp CTTCCTTTCHHHHHHH
T ss_pred CCCccccCCHHHHHHH
Confidence 3589999999999874
No 12
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=21.21 E-value=37 Score=18.65 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHhhhh
Q psy12747 10 KMSKKEKDERILWKKNEV 27 (84)
Q Consensus 10 KmskKekderil~kkneV 27 (84)
+|||.|=+..-.||+++.
T Consensus 13 gmsr~eF~~LP~WKq~~l 30 (37)
T 1und_A 13 GITRGQFAALPGWKQLQM 30 (37)
T ss_dssp SSCHHHHHHSCHHHHHHH
T ss_pred CcCHHHHHHChHHHHHHH
Confidence 588988888889999875
Done!