Query psy12747
Match_columns 84
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 18:38:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12747.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12747hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1io2a_ c.55.3.1 (A:) Class II 48.9 5.9 0.00043 25.8 2.8 32 5-36 38-69 (213)
2 d1uaxa_ c.55.3.1 (A:) Class II 44.3 7.7 0.00056 25.2 2.8 30 5-34 38-67 (211)
3 d1i39a_ c.55.3.1 (A:) Class II 38.6 11 0.00076 24.0 2.7 31 5-36 35-65 (200)
4 d1ekea_ c.55.3.1 (A:) Class II 25.5 31 0.0022 21.6 3.3 18 5-22 38-55 (225)
5 d1yu8x1 a.14.1.1 (X:42-76) Vil 20.2 16 0.0011 18.8 0.8 18 10-27 11-28 (35)
6 d1unda_ a.14.1.1 (A:) Advillin 18.6 21 0.0016 18.3 1.1 18 10-27 12-29 (36)
7 d2etja1 c.55.3.1 (A:1-221) Cla 15.0 26 0.0019 23.4 1.1 21 4-24 42-62 (221)
8 d1ppjw_ f.23.14.1 (W:) Subunit 13.9 29 0.0021 19.8 1.0 31 36-66 12-42 (62)
9 d2i5ha1 e.71.1.1 (A:16-195) Hy 12.8 36 0.0026 22.8 1.3 35 7-42 73-107 (180)
10 d1imva_ e.1.1.1 (A:) Pigment e 11.6 48 0.0035 22.6 1.7 35 50-84 25-62 (383)
No 1
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=48.88 E-value=5.9 Score=25.78 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=21.1
Q ss_pred cccccccchHHHHHHHHHHhhhhhcccceeee
Q psy12747 5 LSDDKKMSKKEKDERILWKKNEVADFEATTFS 36 (84)
Q Consensus 5 ~~~dkKmskKekderil~kkneVad~Eat~fS 36 (84)
+.|.|++|.|+|+|..-+-++..-++.....|
T Consensus 38 v~DSK~Ls~~kR~~l~~~I~~~~~~~~i~~~~ 69 (213)
T d1io2a_ 38 VRDSKKLTPKRREKLFNEILGVLDDYVILELP 69 (213)
T ss_dssp GGGCTTCCHHHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cchhhhCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 57999999999988654445444444444433
No 2
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=44.29 E-value=7.7 Score=25.19 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=19.7
Q ss_pred cccccccchHHHHHHHHHHhhhhhccccee
Q psy12747 5 LSDDKKMSKKEKDERILWKKNEVADFEATT 34 (84)
Q Consensus 5 ~~~dkKmskKekderil~kkneVad~Eat~ 34 (84)
+.|.|++|.|+|+|..-.-++...++.-..
T Consensus 38 v~DSK~Ls~~kR~~l~~~i~~~~~~~~i~~ 67 (211)
T d1uaxa_ 38 VKDSKQLTPGQREKLFSKLIDILDDYYVLL 67 (211)
T ss_dssp GGGSTTSCHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CccchhCCHHHHHHHHHHHhhcccceEEee
Confidence 579999999999876544444444444333
No 3
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=38.56 E-value=11 Score=24.03 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=20.2
Q ss_pred cccccccchHHHHHHHHHHhhhhhcccceeee
Q psy12747 5 LSDDKKMSKKEKDERILWKKNEVADFEATTFS 36 (84)
Q Consensus 5 ~~~dkKmskKekderil~kkneVad~Eat~fS 36 (84)
+.|.|+||.|+|+|..-+=+ +.+.+.....|
T Consensus 35 v~DSK~Ls~~kr~~l~~~I~-~~~~~~i~~~~ 65 (200)
T d1i39a_ 35 VKDSKKLSQGRREELAEEIR-KICRTEVLKVS 65 (200)
T ss_dssp CTTCTTCCHHHHHHHHHHHH-HHEEEEEEEEC
T ss_pred chhhhcCCHHHHHHHHHHHh-hcchhheeeec
Confidence 47999999999987544433 34555444443
No 4
>d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=25.52 E-value=31 Score=21.62 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=11.4
Q ss_pred cccccccchHHHHHHHHH
Q psy12747 5 LSDDKKMSKKEKDERILW 22 (84)
Q Consensus 5 ~~~dkKmskKekderil~ 22 (84)
+.|.|++|.++|++..-.
T Consensus 38 v~DSK~Ls~~kr~~l~~~ 55 (225)
T d1ekea_ 38 VKDSKELTKNKRAYLKKL 55 (225)
T ss_dssp CC---CCCHHHHHHHHHH
T ss_pred CCchhcCCHHHHHHHHHH
Confidence 589999999999775433
No 5
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.16 E-value=16 Score=18.75 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=15.1
Q ss_pred ccchHHHHHHHHHHhhhh
Q psy12747 10 KMSKKEKDERILWKKNEV 27 (84)
Q Consensus 10 KmskKekderil~kkneV 27 (84)
.|||.|=+..-.||+++.
T Consensus 11 gmsr~eF~~LP~WKq~~l 28 (35)
T d1yu8x1 11 GMTRSAFANLPLWKQQNL 28 (35)
T ss_dssp SSCHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHCcHhHHHHH
Confidence 588888888889999875
No 6
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.58 E-value=21 Score=18.31 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHhhhh
Q psy12747 10 KMSKKEKDERILWKKNEV 27 (84)
Q Consensus 10 KmskKekderil~kkneV 27 (84)
.|||.|=+..-.||+++.
T Consensus 12 gmsr~eF~~LP~WKq~~l 29 (36)
T d1unda_ 12 GITRGQFAALPGWKQLQM 29 (36)
T ss_dssp SSCHHHHHHSCHHHHHHH
T ss_pred CcCHHHHHHCcHHHHHHH
Confidence 588888888888999875
No 7
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]}
Probab=15.02 E-value=26 Score=23.35 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=7.0
Q ss_pred ccccccccchHHHHHHHHHHh
Q psy12747 4 KLSDDKKMSKKEKDERILWKK 24 (84)
Q Consensus 4 ~~~~dkKmskKekderil~kk 24 (84)
.+.|.|+||.++|++..-+-+
T Consensus 42 gv~DSK~Lt~~kR~~l~~~i~ 62 (221)
T d2etja1 42 GINDSKQLSPAKRERLLDEIM 62 (221)
T ss_dssp ----------CHHHHHHHHHH
T ss_pred hhhhhccCCHHHHHHHhhhhh
Confidence 357999999999987544433
No 8
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.92 E-value=29 Score=19.80 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=23.9
Q ss_pred ehhhhhHHHHHHHHHHHHHHhccCCccchhh
Q psy12747 36 SIFYNNALFLAIVIFLSFYILKSFTPTFNYI 66 (84)
Q Consensus 36 SIFYnNalFl~l~i~~SF~llk~~~p~~NYi 66 (84)
.+|=.|+.|+.-+++.+|+.=+.++-..|.+
T Consensus 12 ~lfrRnStf~~tI~~gAf~fE~~fD~~~d~i 42 (62)
T d1ppjw_ 12 LLFRRTSTFALTIVVGALFFERAFDQGADAI 42 (62)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666799999999999998877666555544
No 9
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.83 E-value=36 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=29.4
Q ss_pred cccccchHHHHHHHHHHhhhhhcccceeeehhhhhH
Q psy12747 7 DDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNA 42 (84)
Q Consensus 7 ~dkKmskKekderil~kkneVad~Eat~fSIFYnNa 42 (84)
...++|.--|.|.-..-+.=|.+.|.-+.. |||+|
T Consensus 73 ~y~dLt~~Ak~eL~~vv~~iV~~ne~~FV~-FfN~A 107 (180)
T d2i5ha1 73 RYEDLTPAAKTELPYVIEHIIKQDEKKYVD-FFNKA 107 (180)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTTHHHHHH-HHC--
T ss_pred cHhhccHHHHHHHHHHHHHHHHhChhhhee-eeecC
Confidence 467788888999888889999999999998 99987
No 10
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.56 E-value=48 Score=22.59 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=26.3
Q ss_pred HHHHHHhcc---CCccchhhhHHHHHHHHHHHHhccCC
Q psy12747 50 FLSFYILKS---FTPTFNYIFSLWISAGFLALLSTGTK 84 (84)
Q Consensus 50 ~~SF~llk~---~~p~~NYi~S~~~aagl~a~lST~~~ 84 (84)
-|+|=+++. .+|.=|.++|=..-...+++|+-|++
T Consensus 25 ~F~~~L~~~l~~~~~~~Niv~SP~si~~~L~~l~~Ga~ 62 (383)
T d1imva_ 25 NFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGAD 62 (383)
T ss_dssp HHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhccCcCCcEEECHHHHHHHHHHHHHhcC
Confidence 355555543 47888999999888888999988764
Done!