RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12747
         (84 letters)



>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
            ATPase, membrane protein, hydrolase, aluminium fluoride,
            ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
          Length = 1034

 Score = 28.0 bits (63), Expect = 0.32
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 37   IFYNNALFLAIVIFLSFYILKSFTPTFNYIFSL-------WISAGFLALL 79
             F N  L +AIV  +       + P    IF+        W+      LL
Sbjct: 959  FFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLL 1008


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
            binding, haloacid dehydrogenease superfamily, phosphate
            analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
            PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
            1mo8_A* 1q3i_A
          Length = 1028

 Score = 26.8 bits (60), Expect = 0.74
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 7/49 (14%)

Query: 38   FYNNALFLAIVIFLSFYILKSFTPTFNYIFSL-------WISAGFLALL 79
              N  L   +    +     S+ P  +    +       W  A   +L+
Sbjct: 954  MKNKILIFGLFEETALAAFLSYCPGTDVALRMYPLKPSWWFCAFPYSLI 1002


>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
           ribosomal protein, STM1, eukaryotic ribosome; 3.00A
           {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
           3o58_E 3o5h_E 3jyw_E 1s1i_E
          Length = 297

 Score = 23.9 bits (51), Expect = 7.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 9   KKMSKKEKDERILWKKNEVA 28
            K+SK+E+  R+  K   +A
Sbjct: 275 TKLSKEERAARVAAKIAALA 294


>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 297

 Score = 23.9 bits (51), Expect = 7.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 2   AKKLSDDKKMSKKEKDERILWKKNE 26
            KK  +  KMS  +K +R+  KK  
Sbjct: 262 KKKRWNRPKMSLAQKKDRVAQKKAS 286


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,222,742
Number of extensions: 57393
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 9
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)