RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12747
         (84 letters)



>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal
          protein L2 {Deinococcus radiodurans [TaxId: 1299]}
          Length = 95

 Score = 23.2 bits (50), Expect = 3.4
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 14 KEKDERILWKKNEVADFEATTFSIFY--NNALFLAIVIFLS---FYIL 56
          K     I +K+ + +   A   +I Y  N +  +A++ +      YIL
Sbjct: 27 KRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYIL 74


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 23.5 bits (50), Expect = 4.0
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 37  IFYNNALFLAIVIFLSFYILKSFTPTFNYIFSL 69
            + N  L  +I + +S + L  +      IF L
Sbjct: 405 PWVNIWLLGSICLSMSLHFLILYVDPLPMIFKL 437


>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC
          {Escherichia coli [TaxId: 562]}
          Length = 130

 Score = 23.1 bits (50), Expect = 4.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 50 FLSFYILKSFTPTFNYIFSLWISAGFLAL 78
          F  FY+L+  T      FS+ +  G  AL
Sbjct: 21 FYRFYMLREGTAVPAVWFSIELIFGLFAL 49


>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase,
          subunit II {Cow (Bos taurus) [TaxId: 9913]}
          Length = 90

 Score = 22.0 bits (47), Expect = 10.0
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 38 FYNNALFLAIVIFLSFYILKSFTPTFNYIFSLWISAGFLALLST 81
          F+++ L +  +I      + S   T     +  + A  +  + T
Sbjct: 23 FHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWT 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,248
Number of extensions: 11611
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 7
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)