Query psy12750
Match_columns 93
No_of_seqs 104 out of 427
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:43:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mhq_A ADP-ribosylation factor 100.0 1.5E-36 5.2E-41 208.8 11.7 90 3-92 51-140 (148)
2 3g2s_A C-terminal fragment of 100.0 1.1E-36 3.8E-41 210.0 11.0 88 3-90 61-148 (149)
3 1juq_A ADP-ribosylation factor 100.0 6.5E-35 2.2E-39 204.7 11.4 89 3-91 63-151 (171)
4 3ldz_A STAM-1, signal transduc 100.0 3.8E-33 1.3E-37 190.0 9.4 82 3-90 55-139 (140)
5 1elk_A Target of MYB1; superhe 100.0 4.8E-33 1.7E-37 192.6 10.1 86 3-91 67-156 (157)
6 1x5b_A Signal transducing adap 100.0 1.4E-32 4.8E-37 191.5 10.5 85 3-92 65-152 (163)
7 3rru_A TOM1L1 protein; structu 100.0 1.9E-32 6.6E-37 189.4 7.7 82 3-87 67-152 (152)
8 3zyq_A Hepatocyte growth facto 100.0 3.4E-31 1.2E-35 191.9 9.9 85 3-92 58-145 (226)
9 1dvp_A HRS, hepatocyte growth 100.0 1.6E-28 5.4E-33 176.6 9.5 84 3-91 55-141 (220)
10 1sz9_A PCF11 protein; RNA poly 98.2 8E-06 2.7E-10 55.2 7.4 78 3-87 56-139 (144)
11 3d9j_A RNA-binding protein 16; 96.2 0.0084 2.9E-07 40.1 5.3 76 6-85 58-137 (145)
12 1inz_A EPS15-interacting porte 95.8 0.038 1.3E-06 37.4 7.1 63 3-67 74-139 (148)
13 1vdy_A Hypothetical protein (R 95.8 0.0074 2.5E-07 40.7 3.5 62 3-66 62-128 (140)
14 1xgw_A Epsin 4; ENTH, enthopro 95.7 0.046 1.6E-06 38.0 7.1 63 3-67 86-151 (176)
15 1eyh_A Epsin; superhelix of he 95.2 0.035 1.2E-06 37.4 5.2 64 3-68 56-122 (144)
16 3onk_A Epsin-3, ENT3; helix, p 94.4 0.1 3.5E-06 35.4 5.7 63 3-67 63-128 (150)
17 4flb_A Regulation of nuclear P 94.4 0.035 1.2E-06 35.9 3.3 60 3-68 53-112 (132)
18 3clj_A Protein NRD1; CTD-inter 92.7 0.49 1.7E-05 32.2 7.0 64 8-73 59-136 (157)
19 3dad_A FH1/FH2 domain-containi 91.6 1.4 4.9E-05 33.4 9.0 84 3-89 215-307 (339)
20 4fu3_A Regulation of nuclear P 90.0 0.14 4.7E-06 33.0 1.8 56 6-68 55-113 (135)
21 3grl_A General vesicular trans 85.1 2.5 8.5E-05 34.7 6.8 80 3-88 135-222 (651)
22 2qk2_A LP04448P; mini spindles 82.0 6 0.00021 26.6 6.9 60 3-70 70-129 (242)
23 2qk2_A LP04448P; mini spindles 81.6 6.9 0.00024 26.3 7.1 61 3-71 146-208 (242)
24 1fad_A Protein (FADD protein); 78.7 1.5 5E-05 26.8 2.6 71 13-88 16-86 (99)
25 3ezq_B Protein FADD; apoptosis 78.6 3 0.0001 26.9 4.2 69 13-87 8-77 (122)
26 2qk1_A Protein STU2; STU2P, XM 76.5 15 0.00052 25.4 7.7 64 3-73 159-225 (249)
27 2o71_A Death domain-containing 75.8 1.9 6.6E-05 27.5 2.6 70 15-89 28-97 (115)
28 2km4_A Regulator of TY1 transp 75.7 14 0.00046 24.0 7.4 64 3-69 53-116 (142)
29 4ffb_C Protein STU2; tubulin f 75.0 11 0.00038 26.0 6.7 62 3-70 68-134 (278)
30 2of5_A Death domain-containing 74.6 2.3 7.8E-05 27.2 2.7 71 14-89 27-97 (114)
31 4db6_A Armadillo repeat protei 73.8 13 0.00044 23.8 6.4 58 3-67 151-208 (210)
32 3nfq_A Transcription factor IW 72.4 8.1 0.00028 26.5 5.2 59 7-65 49-108 (170)
33 4fdd_A Transportin-1; heat rep 71.8 18 0.00061 28.8 7.9 61 6-72 602-662 (852)
34 2of5_H Leucine-rich repeat and 71.0 6.6 0.00023 24.8 4.3 71 13-88 15-86 (118)
35 2p6v_A Transcription initiatio 68.4 11 0.00036 24.5 4.8 34 32-69 23-56 (114)
36 2h7b_A Core-binding factor, ML 63.2 4.9 0.00017 25.7 2.4 32 32-69 10-41 (105)
37 1bh9_B TAFII28; histone fold, 62.9 7.6 0.00026 23.8 3.2 34 55-88 53-87 (89)
38 4ffb_C Protein STU2; tubulin f 62.6 7.5 0.00026 27.0 3.6 54 3-65 152-209 (278)
39 2gf5_A FADD protein; death dom 62.2 7.4 0.00025 26.5 3.4 35 53-87 135-169 (191)
40 2xpp_A IWS1, ECU08_0440; trans 62.0 14 0.00047 24.6 4.6 58 9-66 36-94 (145)
41 2yqf_A Ankyrin-1; death domain 61.9 6.7 0.00023 24.4 2.9 37 52-88 54-90 (111)
42 1ibr_B P95, importin beta-1 su 61.5 16 0.00055 26.0 5.3 74 3-84 379-457 (462)
43 2qk1_A Protein STU2; STU2P, XM 60.4 25 0.00086 24.3 6.0 76 3-86 74-158 (249)
44 1wxp_A THO complex subunit 1; 60.2 5.9 0.0002 24.7 2.4 69 14-88 21-89 (110)
45 1b3u_A Protein (protein phosph 58.1 48 0.0016 24.3 7.5 59 3-71 415-473 (588)
46 4b8j_A Importin subunit alpha- 55.4 37 0.0013 25.2 6.5 60 3-68 384-443 (528)
47 1b3u_A Protein (protein phosph 55.4 36 0.0012 25.0 6.4 37 4-44 494-530 (588)
48 2ahq_A Sigma-54, RNA polymeras 55.4 3.8 0.00013 24.6 0.8 39 50-91 16-55 (76)
49 1qgr_A Protein (importin beta 55.2 72 0.0025 24.8 9.0 62 3-72 379-441 (876)
50 2jdq_A Importin alpha-1 subuni 54.5 24 0.00081 25.1 5.2 59 3-67 374-442 (450)
51 4hxt_A De novo protein OR329; 52.9 43 0.0015 21.6 7.1 62 4-72 184-245 (252)
52 1xqr_A HSPBP1 protein; armadil 51.3 35 0.0012 24.4 5.7 59 4-69 181-239 (296)
53 1wa5_B Importin alpha subunit; 49.7 58 0.002 24.2 6.8 61 3-69 396-458 (530)
54 3ul1_B Importin subunit alpha- 47.5 87 0.003 23.5 7.8 56 4-65 372-427 (510)
55 2jdq_A Importin alpha-1 subuni 46.9 74 0.0025 22.5 7.3 59 4-68 332-390 (450)
56 4b8j_A Importin subunit alpha- 44.7 62 0.0021 23.9 6.3 59 3-67 427-495 (528)
57 4hxt_A De novo protein OR329; 43.7 62 0.0021 20.7 6.4 59 3-68 15-73 (252)
58 4db8_A Armadillo-repeat protei 43.2 48 0.0016 21.6 5.0 58 4-68 26-83 (252)
59 1qgr_A Protein (importin beta 42.4 1.2E+02 0.004 23.6 8.1 64 3-72 663-726 (876)
60 1wa5_B Importin alpha subunit; 41.8 60 0.0021 24.1 5.8 61 3-69 441-511 (530)
61 2bpt_A Importin beta-1 subunit 41.7 89 0.0031 24.2 6.9 62 5-72 654-715 (861)
62 2li3_A Potassium channel toxin 40.9 9.1 0.00031 18.9 0.7 9 14-22 19-27 (30)
63 2z6g_A B-catenin; FULL-length, 40.4 1.4E+02 0.0048 23.9 8.5 61 3-71 606-666 (780)
64 1xqr_A HSPBP1 protein; armadil 40.2 70 0.0024 22.8 5.8 62 3-70 95-156 (296)
65 4fdd_A Transportin-1; heat rep 38.7 79 0.0027 25.1 6.3 74 4-85 643-722 (852)
66 1h3o_B Transcription initiatio 38.7 53 0.0018 19.5 4.1 37 28-67 4-40 (76)
67 2guz_A Mitochondrial import in 38.6 50 0.0017 18.5 4.0 39 50-88 27-69 (71)
68 3oq9_A Tumor necrosis factor r 38.3 41 0.0014 20.2 3.7 35 54-88 39-73 (86)
69 3tpo_A Importin subunit alpha- 37.4 1.3E+02 0.0044 22.6 7.8 56 4-65 391-446 (529)
70 2of3_A ZYG-9; multifunctional 37.4 57 0.0019 23.4 4.9 62 3-71 100-164 (266)
71 1t0f_C Protein E, transposon T 37.2 16 0.00054 20.5 1.5 14 78-91 32-45 (54)
72 1ich_A TNF-1, tumor necrosis f 36.2 79 0.0027 20.0 4.9 36 53-88 51-87 (112)
73 2db0_A 253AA long hypothetical 34.6 1.2E+02 0.0041 21.8 6.0 53 28-86 27-81 (253)
74 3dad_A FH1/FH2 domain-containi 34.0 1E+02 0.0035 23.2 5.9 62 3-71 173-234 (339)
75 1hx8_A Synapse-enriched clathr 34.0 33 0.0011 24.8 3.2 30 3-32 73-102 (299)
76 3zyl_A Phosphatidylinositol-bi 32.8 33 0.0011 24.7 3.0 28 3-30 78-105 (271)
77 3b4s_A Protein LUXT; APC91483. 32.6 46 0.0016 20.7 3.2 20 61-81 23-42 (94)
78 1sn9_A BBAT, tetrameric beta-B 31.8 17 0.00058 17.2 0.9 16 29-44 4-19 (26)
79 2plx_B Peptide inhibitor; heli 31.8 16 0.00056 17.3 0.8 11 12-22 15-25 (26)
80 3pmr_A Amyloid-like protein 1; 31.1 60 0.002 23.1 4.0 33 55-87 41-85 (219)
81 2bpt_A Importin beta-1 subunit 30.9 1.9E+02 0.0063 22.4 7.2 60 4-71 383-443 (861)
82 1uj8_A ORF3, hypothetical prot 30.7 37 0.0013 20.4 2.5 20 51-70 56-76 (77)
83 2of3_A ZYG-9; multifunctional 30.7 76 0.0026 22.8 4.6 50 3-64 180-232 (266)
84 2kmu_A ATP-dependent DNA helic 30.5 63 0.0021 18.1 3.3 14 57-70 7-20 (56)
85 2lo0_A Uncharacterized protein 30.3 15 0.00052 22.0 0.7 42 23-68 31-73 (75)
86 4ets_A Ferric uptake regulatio 30.2 85 0.0029 20.4 4.5 57 17-86 5-61 (162)
87 3zym_A Phosphatidylinositol-bi 29.7 40 0.0014 24.7 3.0 29 3-31 78-106 (310)
88 1jdh_A Beta-catenin; beta-cate 29.6 1.3E+02 0.0044 21.8 5.8 54 4-65 474-527 (529)
89 3umh_A Amyloid beta A4 protein 29.5 65 0.0022 22.8 4.0 32 56-87 35-78 (211)
90 1hu3_A EIF4GII; heat repeat, t 28.9 85 0.0029 21.9 4.6 58 10-71 182-242 (260)
91 4db6_A Armadillo repeat protei 28.8 1.1E+02 0.0038 19.2 6.4 59 3-68 109-167 (210)
92 3kev_A Galieria sulfuraria DCU 28.4 82 0.0028 21.8 4.3 46 26-81 57-102 (199)
93 3ul1_B Importin subunit alpha- 26.9 1.9E+02 0.0063 21.6 6.4 58 3-66 414-476 (510)
94 2cmy_B Beta trypsin, veronica 26.9 29 0.00099 17.3 1.3 12 12-23 20-31 (34)
95 4db8_A Armadillo-repeat protei 26.7 1.3E+02 0.0045 19.4 5.9 58 3-67 151-208 (252)
96 1w63_A Adapter-related protein 26.3 1.3E+02 0.0044 23.3 5.6 36 52-87 398-435 (618)
97 3b2a_A TON_1937, putative unch 25.6 2E+02 0.0067 21.0 9.2 62 3-71 46-107 (265)
98 3ezq_A Tumor necrosis factor r 25.6 53 0.0018 21.0 2.7 34 52-85 45-78 (115)
99 4d8o_A Ankyrin-2; ZU5, UPA, de 25.2 43 0.0015 27.1 2.6 70 13-87 500-569 (581)
100 3fdq_A Motility gene repressor 24.5 44 0.0015 22.6 2.2 19 74-92 114-132 (170)
101 2lnb_A Z-DNA-binding protein 1 24.1 83 0.0028 19.0 3.2 40 52-91 17-66 (80)
102 2fe3_A Peroxide operon regulat 22.7 1.5E+02 0.0051 18.6 4.8 31 54-88 22-52 (145)
103 4ap9_A Phosphoserine phosphata 22.6 76 0.0026 19.4 3.0 29 62-90 70-98 (201)
104 1tqe_X Histone deacetylase 9; 22.5 46 0.0016 15.9 1.5 15 51-65 7-21 (26)
105 3tpo_A Importin subunit alpha- 22.2 1.7E+02 0.0059 21.9 5.4 58 3-66 433-495 (529)
106 1jdh_A Beta-catenin; beta-cate 22.0 2.3E+02 0.0078 20.4 6.9 58 4-68 115-172 (529)
107 3tdu_A DCN1-like protein 1; E2 22.0 1.3E+02 0.0046 20.7 4.4 46 26-81 55-100 (200)
108 1u6g_C TIP120 protein, CAND1; 21.8 2.2E+02 0.0074 23.6 6.3 74 4-85 148-224 (1230)
109 2dul_A N(2),N(2)-dimethylguano 21.6 1.8E+02 0.0061 21.5 5.3 58 28-91 280-353 (378)
110 3l5k_A Protein GS1, haloacid d 21.5 1.6E+02 0.0054 19.0 4.6 39 52-90 93-131 (250)
111 2vso_E Eukaryotic initiation f 20.8 92 0.0031 22.1 3.5 14 51-64 262-275 (284)
112 1wjt_A Transcription elongatio 20.5 98 0.0033 19.1 3.1 22 51-72 67-88 (103)
113 1bvp_1 Bluetongue virus coat p 20.3 20 0.00068 27.3 -0.2 29 6-34 4-32 (349)
114 2z6h_A Catenin beta-1, beta-ca 20.3 2.9E+02 0.0098 21.1 6.4 55 3-65 470-524 (644)
115 2vgl_A Adaptor protein complex 20.2 2.9E+02 0.0099 21.5 6.5 55 3-67 342-397 (621)
116 1dpj_B IA3, proteinase inhibit 20.2 30 0.001 17.2 0.5 27 56-82 4-31 (33)
No 1
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=1.5e-36 Score=208.85 Aligned_cols=90 Identities=50% Similarity=0.939 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEM 82 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~ 82 (93)
|.|||++||+|||+||||||++||.|||+++|+++|+++++++|.|+.++.+||+||+++|++|+.+|+++|+|.++|++
T Consensus 51 n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~ 130 (148)
T 1mhq_A 51 QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQM 130 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 78999999999999999999999999999999999999999988877889999999999999999999999999999999
Q ss_pred HHHcCccccc
Q psy12750 83 LKKQQVVQAW 92 (93)
Q Consensus 83 Lk~~G~~f~~ 92 (93)
||++||.|..
T Consensus 131 Lk~~G~~Fp~ 140 (148)
T 1mhq_A 131 LKKQGIIKQD 140 (148)
T ss_dssp HHHTTSSCSC
T ss_pred HHHcCCCCCC
Confidence 9999999963
No 2
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=1.1e-36 Score=210.04 Aligned_cols=88 Identities=58% Similarity=0.986 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEM 82 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~ 82 (93)
|+|||++||+|||+||||||++||.|||+++|+++|+++++++|+|++++.+||+||+++|++|+.+|+++|+|.++|++
T Consensus 61 n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~Y~~ 140 (149)
T 3g2s_A 61 QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQM 140 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 78999999999999999999999999999999999999999998777889999999999999999999999999999999
Q ss_pred HHHcCccc
Q psy12750 83 LKKQQVVQ 90 (93)
Q Consensus 83 Lk~~G~~f 90 (93)
||++||+.
T Consensus 141 Lk~~Giv~ 148 (149)
T 3g2s_A 141 LKKQGIVK 148 (149)
T ss_dssp HHHTTCCC
T ss_pred HHHCcCcC
Confidence 99999975
No 3
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=6.5e-35 Score=204.69 Aligned_cols=89 Identities=56% Similarity=1.010 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEM 82 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~ 82 (93)
|.|||++||+|||+||||||++||.|||+++|+++|+++++++|.|+.++.+||+||+++|++|+.+|+++|+|.++|++
T Consensus 63 n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~ 142 (171)
T 1juq_A 63 QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHM 142 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 78999999999999999999999999999999999999999988778899999999999999999999999999999999
Q ss_pred HHHcCcccc
Q psy12750 83 LKKQQVVQA 91 (93)
Q Consensus 83 Lk~~G~~f~ 91 (93)
||++||.|.
T Consensus 143 Lk~~G~~f~ 151 (171)
T 1juq_A 143 LKRQGIVQS 151 (171)
T ss_dssp HHHTTSCSS
T ss_pred HHHCCCCCC
Confidence 999999983
No 4
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=3.8e-33 Score=190.03 Aligned_cols=82 Identities=26% Similarity=0.439 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCch---HHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESK---IREA 79 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~---i~~~ 79 (93)
|.|+|++||+|||+||||||++||.|||+++|+++|++++++ +++.||+||+++|++|+.+|+++|+ |.++
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~------~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 128 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK------GHPKVCEKLKALMVEWTDEFKNDPQLSLISAM 128 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc------CCHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 689999999999999999999999999999999999999952 5789999999999999999999986 9999
Q ss_pred HHHHHHcCccc
Q psy12750 80 YEMLKKQQVVQ 90 (93)
Q Consensus 80 Y~~Lk~~G~~f 90 (93)
|++||++||.|
T Consensus 129 Y~~Lk~~G~~F 139 (140)
T 3ldz_A 129 IKNLKEQGVTF 139 (140)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHccCcC
Confidence 99999999998
No 5
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=4.8e-33 Score=192.55 Aligned_cols=86 Identities=27% Similarity=0.569 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHH-HHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCch---HHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNE-LIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESK---IRE 78 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~-l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~---i~~ 78 (93)
|.|||++||+|||+||||||++||.|||+++|+++ |++++++++. ++..||+||+++|++|+.+|+++|. |.+
T Consensus 67 n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~---~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~ 143 (157)
T 1elk_A 67 NFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNN---PPTIVHDKVLNLIQSWADAFRSSPDLTGVVT 143 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTC---CCHHHHHHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHHHHHHcCCCcchHHHHH
Confidence 68999999999999999999999999999999999 8999988743 6789999999999999999998764 999
Q ss_pred HHHHHHHcCcccc
Q psy12750 79 AYEMLKKQQVVQA 91 (93)
Q Consensus 79 ~Y~~Lk~~G~~f~ 91 (93)
+|++||++||.|-
T Consensus 144 ~Y~~Lk~~G~~FP 156 (157)
T 1elk_A 144 IYEDLRRKGLEFP 156 (157)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 9999999999984
No 6
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=99.98 E-value=1.4e-32 Score=191.46 Aligned_cols=85 Identities=22% Similarity=0.423 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCch---HHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESK---IREA 79 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~---i~~~ 79 (93)
|.|||++||+|||+||||||++||.|||+++|+++|+++++++ +++.||+||+++|++|+.+|+++|+ |.++
T Consensus 65 n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~-----~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 139 (163)
T 1x5b_A 65 VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK-----AHPKVCEKLKSLMVEWSEEFQKDPQFSLISAT 139 (163)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 6899999999999999999999999999999999999999764 5789999999999999999999875 8999
Q ss_pred HHHHHHcCccccc
Q psy12750 80 YEMLKKQQVVQAW 92 (93)
Q Consensus 80 Y~~Lk~~G~~f~~ 92 (93)
|++||++||.|..
T Consensus 140 Y~~Lk~~G~~FP~ 152 (163)
T 1x5b_A 140 IKSMKEEGITFPP 152 (163)
T ss_dssp HHHHHTTTCCCCC
T ss_pred HHHHHHcCCCCCC
Confidence 9999999999953
No 7
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=189.41 Aligned_cols=82 Identities=29% Similarity=0.672 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHH-HHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCc---hHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNE-LIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRES---KIRE 78 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~-l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~---~i~~ 78 (93)
|+++|++||+|||+||||||++||.|||+++|+++ |+++++++++ ++.+||+||++||++|+.+|+++| .|.+
T Consensus 67 n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~---~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~ 143 (152)
T 3rru_A 67 NHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYN---LPLDIQNRILNFIKTWSQGFPGGVDVSEVKE 143 (152)
T ss_dssp BHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGC---CCHHHHHHHHHHHHHHHTCCSSSCCCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCC---CcHHHHHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 78999999999999999999999999999999998 8999988753 678999999999999999999875 6999
Q ss_pred HHHHHHHcC
Q psy12750 79 AYEMLKKQQ 87 (93)
Q Consensus 79 ~Y~~Lk~~G 87 (93)
+|++||++|
T Consensus 144 ~Y~~Lk~~G 152 (152)
T 3rru_A 144 VYLDLVKKG 152 (152)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHCc
Confidence 999999998
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.97 E-value=3.4e-31 Score=191.95 Aligned_cols=85 Identities=24% Similarity=0.472 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCch---HHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESK---IREA 79 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~---i~~~ 79 (93)
|.|||++||+|||+||||||++||.|||+++|+++|++++++. ++.+||+||++||++|+.+|+++|+ |.++
T Consensus 58 n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~-----~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 132 (226)
T 3zyq_A 58 NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ-----VEVNVRNKILYLIQAWAHAFRNEPKYKVVQDT 132 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 7899999999999999999999999999999999999999653 7899999999999999999999886 9999
Q ss_pred HHHHHHcCccccc
Q psy12750 80 YEMLKKQQVVQAW 92 (93)
Q Consensus 80 Y~~Lk~~G~~f~~ 92 (93)
|++||++||+|..
T Consensus 133 Y~~Lk~~G~~FP~ 145 (226)
T 3zyq_A 133 YQIMKVEGHVFPE 145 (226)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHhcCCCccc
Confidence 9999999999853
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.95 E-value=1.6e-28 Score=176.62 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCch---HHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESK---IREA 79 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~---i~~~ 79 (93)
|.|||++||+|||+||||||++||.|||+++|+++|++++.+. ++.+||+|++++|++|+.+|+++|+ |.++
T Consensus 55 n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~-----~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~ 129 (220)
T 1dvp_A 55 NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-----PHENVRQKMLELVQTWAYAFRSSDKYQAIKDT 129 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 7899999999999999999999999999999999999999753 6899999999999999999998874 8999
Q ss_pred HHHHHHcCcccc
Q psy12750 80 YEMLKKQQVVQA 91 (93)
Q Consensus 80 Y~~Lk~~G~~f~ 91 (93)
|+.|+++|+.|.
T Consensus 130 y~~Lk~~G~~FP 141 (220)
T 1dvp_A 130 MTILKAKGHTFP 141 (220)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHhhcCcccc
Confidence 999999999874
No 10
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=98.15 E-value=8e-06 Score=55.20 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC------chH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE------SKI 76 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~------~~i 76 (93)
++..-|.+|-|+|+.+||||.+|..+++.. ..+.+..... ..++.+|.|+..|++.|...+++. +.+
T Consensus 56 ~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~-l~~~f~~~~~------~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l 128 (144)
T 1sz9_A 56 MPKQKLYAFYALDSICKNVGSPYTIYFSRN-LFNLYKRTYL------LVDNTTRTKLINMFKLWLNPNDTGLPLFEGSAL 128 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTCTTHHHHHHTT-HHHHHHHHHH------TSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHH
T ss_pred CHhhHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHH------hCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHH
Confidence 456678999999999999999998766652 1222222221 147899999999999999886543 235
Q ss_pred HHHHHHHHHcC
Q psy12750 77 REAYEMLKKQQ 87 (93)
Q Consensus 77 ~~~Y~~Lk~~G 87 (93)
...-+.|.+.|
T Consensus 129 ~~i~~~l~~a~ 139 (144)
T 1sz9_A 129 EKIEQFLIKAS 139 (144)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhh
Confidence 66666666554
No 11
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.24 E-value=0.0084 Score=40.12 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHhhh--ccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH--hCCCCchHHHHHH
Q psy12750 6 LVILTIWVLEACMQHCGPQFHAEV--GKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL--EYPRESKIREAYE 81 (93)
Q Consensus 6 v~l~aL~LLd~cvkNCG~~fh~ev--as~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~--~f~~~~~i~~~Y~ 81 (93)
.-|-+|-|+|+.++|+|.....+. -...|...|.+++..-+. .+++.|.|+..|+..|.. -|+. ..+.+.-+
T Consensus 58 ~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~---~~~~~r~kl~rLl~iW~~r~vF~~-~~l~~l~~ 133 (145)
T 3d9j_A 58 YKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYR---CPGDDKSKIVRVLNLWQKNNVFKS-EIIQPLLD 133 (145)
T ss_dssp GHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTS---SCGGGHHHHHHHHHHHHHTTSSCH-HHHHHHHH
T ss_pred ceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHH
Confidence 447789999999999998542211 124577777766654332 458999999999999985 4553 34555555
Q ss_pred HHHH
Q psy12750 82 MLKK 85 (93)
Q Consensus 82 ~Lk~ 85 (93)
.|..
T Consensus 134 ~l~~ 137 (145)
T 3d9j_A 134 MAAA 137 (145)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 5543
No 12
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=95.85 E-value=0.038 Score=37.37 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHH-HHHHHHh--hCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRF-LNELIKL--ISPKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~F-l~~l~kl--~~~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
+|++++-||+|||-|++||.++|-.++.+.-+ +..|... +.+ .|..-...||+|.-+++.--.
T Consensus 74 ~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~--~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 74 NWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDR--DGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCS--SCCCCCHHHHHHHHHHHHHHT
T ss_pred chhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCC--CCcCchHHHHHHHHHHHHHhC
Confidence 68999999999999999999998877765544 4445442 322 233346789999988876544
No 13
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=95.83 E-value=0.0074 Score=40.70 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCC-----CCCCCCcHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPK-----YLGNLTPDAVRTEIIELLYLW 66 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k-----~~~~~~~~~Vk~kil~liq~W 66 (93)
+.|+.+-||.||+.|++|+.++|..++-..... +..+.+=+ ..|+.....||++.-+++..-
T Consensus 62 ~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~--Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 62 SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA--VRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH--HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH--HHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 468999999999999999999999888777542 22222211 134445589999999987543
No 14
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=95.65 E-value=0.046 Score=38.05 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCC---CCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKY---LGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~---~~~~~~~~Vk~kil~liq~Wa 67 (93)
+|+.++-||+|||-|++||.++|-.++ ++-+..+..|-+=.| .|..-...||+|.-+++.--.
T Consensus 86 ~WR~vyKaL~LLeYLl~nGse~vv~~~--r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 86 NWRRVYKSLLLLAYLIRNGSERVVTSA--REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHH--HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHH--HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC
Confidence 789999999999999999999988877 555554443332222 232234679999998876543
No 15
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=95.24 E-value=0.035 Score=37.35 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHH-HHHHHHh--hCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRF-LNELIKL--ISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~F-l~~l~kl--~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
+|++++-||+|||-|++|+.++|-.++.+.-+ +..|... +.+ .|..-...||+|.-+++.--.+
T Consensus 56 ~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~--~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 56 NWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDR--DGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp GHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCT--TSCBCHHHHHHHHHHHHHHHHC
T ss_pred chHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCC--CccchHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999988766654433 2223221 111 2333346899999888766553
No 16
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=94.37 E-value=0.1 Score=35.36 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCC---CCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKY---LGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~---~~~~~~~~Vk~kil~liq~Wa 67 (93)
+|+..+-||+|||-|++|+.++|-.++-+.-+ .+..|-+=.| .|..-...||+|.-+++.-..
T Consensus 63 ~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~--~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~ 128 (150)
T 3onk_A 63 EWRQIYKALQLLDYLIKHGSERFIDDTRNSIN--LIRILETFHYIDSQGRDQGINVRTRVKALIELLS 128 (150)
T ss_dssp THHHHHHHHHHHHHHHHHSCHHHHHHHHTTHH--HHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHhhhcccccCCCCCchHHHHHHHHHHHHHHHc
Confidence 69999999999999999999998888655433 2322222122 122234689999988876554
No 17
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=94.37 E-value=0.035 Score=35.90 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
+.+.-+..|-|+|..++||+.+...++ ...|..-|..++..- .+++.++|+..++..|.+
T Consensus 53 ~~~~KL~~LYL~ndIl~ns~~~~~~~f-~~~f~~~l~~~~~~~-----~~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 53 AYPHRLNLFYLANDVIQNCKRKNAIIF-RESFADVLPEAAALV-----KDPSVSKSVERIFKIWED 112 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTTCTHH-HHHHHTTHHHHHHTT-----CSTTTHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHhcccChHHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhcc
Confidence 345567889999999999976532221 123333344444322 256789999999999997
No 18
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.49 Score=32.25 Aligned_cols=64 Identities=9% Similarity=0.215 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccCHHHHhh----------hcc--HHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh--CCCC
Q psy12750 8 ILTIWVLEACMQHCGPQFHAE----------VGK--FRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE--YPRE 73 (93)
Q Consensus 8 l~aL~LLd~cvkNCG~~fh~e----------vas--~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~--f~~~ 73 (93)
|-+|-++|+.++||-+.+-.. .|+ +.|.+-+..++.+-+ ...+++.|+||..|+..|... |+.+
T Consensus 59 L~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~i~~l~~~~~--~~~~~~~k~Ki~klldiW~k~~~Fp~e 136 (157)
T 3clj_A 59 LGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEVIQELLSDAI--AKSNQDHKEKIRMLLDIWDRSGLFQKS 136 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred eeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHccCCCCCHH
Confidence 568999999999987655220 110 112111222222211 014788999999999999997 8765
No 19
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=91.62 E-value=1.4 Score=33.38 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHH---hhhcc------HHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFH---AEVGK------FRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE 73 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh---~evas------~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~ 73 (93)
+.+|.-.||.||+.+|.++...+. ++|.+ ......|+++++.+ +..+.+++...+.||..-=..-++.
T Consensus 215 ~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~---~~~D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 215 SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK---NGADPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT---TSCCHHHHHHHHHHHHHHHHHCSSH
T ss_pred cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 367888999999999999854443 33331 11255677888765 2368899999999999877776654
Q ss_pred chHHHHHHHHHHcCcc
Q psy12750 74 SKIREAYEMLKKQQVV 89 (93)
Q Consensus 74 ~~i~~~Y~~Lk~~G~~ 89 (93)
..+.+.-+.|..+|+.
T Consensus 292 d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 292 DSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHHccHH
Confidence 5588888888888874
No 20
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=90.00 E-value=0.14 Score=33.02 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcc---CHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 6 LVILTIWVLEACMQHC---GPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 6 v~l~aL~LLd~cvkNC---G~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
.-+..|-|+|..++|| |..|-..+.. .|..++..-+ ...+++.|+|+..++..|.+
T Consensus 55 ~KL~~LYLindIl~ns~~~~~~y~~~f~~-----~l~~~~~~~~--~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 55 RKLTFLYLANDVIQNSKRKGPEFTREFES-----VLVDAFSHVA--READEGCKKPLERLLNIWQE 113 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTCSHHHHHHHT-----THHHHHHHHH--HHHHTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhcC
Confidence 3467889999999999 4455444322 2222222111 01245678999999999997
No 21
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.06 E-value=2.5 Score=34.67 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccH-HHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC-------c
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKF-RFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE-------S 74 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~-~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~-------~ 74 (93)
+.++-++|+.+|.++..|.+.+.+..|-+. .=+..|+.+++++ .+.||...+.++..-+..=++- .
T Consensus 135 df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~------rE~iRneallLL~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 135 DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS------REVIRNDGVLLLQALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc------hHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 568899999999999999999999998855 5577889999763 6899999999999888643322 2
Q ss_pred hHHHHHHHHHHcCc
Q psy12750 75 KIREAYEMLKKQQV 88 (93)
Q Consensus 75 ~i~~~Y~~Lk~~G~ 88 (93)
.|..+++.++.+|.
T Consensus 209 aFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 209 AFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred cHHHHHHHHHhcCC
Confidence 37777888888885
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=81.97 E-value=6 Score=26.64 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEY 70 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f 70 (93)
|.+|...|+..+..+.+..|+.|...+ ..++..+.+.+.++ ...||+-+.+.+.++....
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll~~l~d~------~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLLEKFKEK------KPNVVTALREAIDAIYAST 129 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHGGGCC------CHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHcC
Confidence 567788899999999988888775433 34566655555542 5667777777777776544
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=81.57 E-value=6.9 Score=26.33 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHhccCHH--HHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQ--FHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~--fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
|+++...++..+..++.+.|+. +...+ ..++..|.+++.+ +..+||+...+.+..-+..++
T Consensus 146 ~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D------~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 146 NPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE------PDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHcC
Confidence 5788999999999999998753 33333 3677788888876 478999999998888776654
No 24
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=78.68 E-value=1.5 Score=26.76 Aligned_cols=71 Identities=11% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCc
Q psy12750 13 VLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQV 88 (93)
Q Consensus 13 LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~ 88 (93)
.++.+.++-|..+..-.-.-.|.+.=+.-+... -+..+++++.+|+..|...-...+-+..++..|++-|.
T Consensus 16 ~~~~ia~~lg~~Wk~Lar~Lg~~~~~I~~I~~~-----~~~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~~ 86 (99)
T 1fad_A 16 AFDIVCDNVGRDWKRLARELKVSEAKMDGIEEK-----YPRSLSERVRESLKVWKNAEKKNASVAGLVKALRTCRL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-----CSSCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCCc
Confidence 345566666755533222235554423333322 13468999999999999876555668888888877653
No 25
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=78.64 E-value=3 Score=26.92 Aligned_cols=69 Identities=10% Similarity=0.241 Sum_probs=43.7
Q ss_pred HHHHHHhccCHHHHhhhccHHHHHH-HHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcC
Q psy12750 13 VLEACMQHCGPQFHAEVGKFRFLNE-LIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQ 87 (93)
Q Consensus 13 LLd~cvkNCG~~fh~evas~~Fl~~-l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G 87 (93)
.++.+..+-|..+..-.-.-.|.+. +..+-. . -+..+++++.+|+..|...-.....+..++..|++-|
T Consensus 8 ~f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~-~-----~p~dl~eq~~~mL~~W~~r~G~~ATv~~L~~AL~~i~ 77 (122)
T 3ezq_B 8 AFNVICDNVGKDWRRLARQLKVSDTKIDSIED-R-----YPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQ 77 (122)
T ss_dssp HHHHHHTTCCTTHHHHHHHTTCCHHHHHHHHH-H-----CSSCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHhCCCHHHHHHHHH-H-----CCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHCC
Confidence 3455667777666333322255444 433332 2 1335899999999999988766666888888887655
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=76.47 E-value=15 Score=25.43 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHhccC---HHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q psy12750 3 PLRLVILTIWVLEACMQHCG---PQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE 73 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG---~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~ 73 (93)
|+.+...++..|..|+.+.+ ..|...+ +++++..|.+++.+ +..+||+...+.+-.-...+.+.
T Consensus 159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D------~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 159 TPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND------TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred ChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHhCHH
Confidence 57899999999999999998 4454422 35678888888875 47899999999998888777653
No 27
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=75.81 E-value=1.9 Score=27.55 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCcc
Q psy12750 15 EACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQVV 89 (93)
Q Consensus 15 d~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~~ 89 (93)
+.+.+|=|.....-.-.-.|.+.=+..|... .+..+++++.+++..|...-....-+..++..|++-|..
T Consensus 28 ~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~-----~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (115)
T 2o71_A 28 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKAN-----HPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (115)
T ss_dssp HHHHHHCCTTHHHHHHHTTCCHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 3445566655532222223444422223222 245789999999999998764445688888888887754
No 28
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=75.74 E-value=14 Score=23.96 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE 69 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~ 69 (93)
+.+..|.-|-|++-.++||-.+-..++ ..+|-..|..++..-+. ..+++++.|+..++.-|.+-
T Consensus 53 ~~~kKL~~lYL~NDVlqnsk~k~~~~f-~~~F~~~L~~~~~~~~~--~~~~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 53 NTRRKLLGLYLMNHVVQQAKGQKIIQF-QDSFGKVAAEVLGRINQ--EFPRDLKKKLSRVVNILKER 116 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGTCCHH-HHHHHHTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHH
T ss_pred CccceehhhhhHHHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhhcc
Confidence 345667778899999999964311111 11222223333322111 13688999999999999873
No 29
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.00 E-value=11 Score=26.03 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhh----hccHHHHHHHH-HhhCCCCCCCCCcHHHHHHHHHHHHHHHHhC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAE----VGKFRFLNELI-KLISPKYLGNLTPDAVRTEIIELLYLWTLEY 70 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~e----vas~~Fl~~l~-kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f 70 (93)
|..|+..||.++.++++++|..+-.. ..-..++..|+ |.+.+ +...+++..++.+-.+...-
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~------~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTS------SRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcC------ccHHHHHHHHHHHHHHHHhc
Confidence 66788999999999999998654211 11123344433 33332 45778888888888887543
No 30
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=74.62 E-value=2.3 Score=27.16 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=44.3
Q ss_pred HHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCcc
Q psy12750 14 LEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQVV 89 (93)
Q Consensus 14 Ld~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~~ 89 (93)
++.+.+|=|.....-.-.-.|.+.=+..+... .+..+++++.+++..|...-....-+..++..|++-|..
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~-----~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKAN-----HPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHH-----CSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 34445666665533333334544422233222 245789999999999998754445688888888887754
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=73.85 E-value=13 Score=23.84 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
+..++..|+..|-.+..+ ++.....+.....++.|.+++.. .+.+|+...+..+...+
T Consensus 151 ~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 151 NEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSH------ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHh
Confidence 456788888888887764 35566777777889999999975 46889999998887653
No 32
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=72.41 E-value=8.1 Score=26.53 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhccCH-HHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHH
Q psy12750 7 VILTIWVLEACMQHCGP-QFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYL 65 (93)
Q Consensus 7 ~l~aL~LLd~cvkNCG~-~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~ 65 (93)
++.=|.+|+..+.-|.+ .+|..+-...+++.+..-+.|-.+|..++..|++.++.++..
T Consensus 49 Al~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~ 108 (170)
T 3nfq_A 49 AMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALND 108 (170)
T ss_dssp CCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHH
Confidence 34567777777777766 677778888899999999988877888889999999999874
No 33
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=71.83 E-value=18 Score=28.84 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy12750 6 LVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR 72 (93)
Q Consensus 6 v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~ 72 (93)
++.-++.++..+++..|..|...++...+++-+..++.++ ...|++-+..++..-+..+++
T Consensus 602 ~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~------~~~vr~~a~~~l~~l~~~~~~ 662 (852)
T 4fdd_A 602 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK------MPEVRQSSFALLGDLTKACFQ 662 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC------ChhHHHHHHHHHHHHHHHhhH
Confidence 5667889999999999999988887778999888888653 578999999999999988865
No 34
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=70.96 E-value=6.6 Score=24.83 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=45.0
Q ss_pred HHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHcCc
Q psy12750 13 VLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR-ESKIREAYEMLKKQQV 88 (93)
Q Consensus 13 LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~-~~~i~~~Y~~Lk~~G~ 88 (93)
.++.+.++-|..+..-...-.|.+.=+..+... .+..+++++.+|+..|...-.+ ...+..++..|++-|-
T Consensus 15 ~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~-----~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~~r 86 (118)
T 2of5_H 15 NLLSVAGRLGLDWPAVALHLGVSYREVQRIRHE-----FRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALEQSDR 86 (118)
T ss_dssp HHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHcCc
Confidence 355566777776633332335555422333322 2456899999999999998644 4568888888887653
No 35
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=68.44 E-value=11 Score=24.48 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy12750 32 FRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE 69 (93)
Q Consensus 32 ~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~ 69 (93)
+.|+..|+++.++. ..+++|.+++.+||+..-++
T Consensus 23 k~FL~tLi~las~~----~~spev~~~Vr~LVq~Ll~~ 56 (114)
T 2p6v_A 23 XNFLSTLIXLASSG----XQSTETAANVXELVQNLLDG 56 (114)
T ss_dssp HHHHHHHHHHHTSS----SSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc----ccChHHHHHHHHHHHHHHHc
Confidence 89999999999862 24678888888888887654
No 36
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=63.16 E-value=4.9 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy12750 32 FRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE 69 (93)
Q Consensus 32 ~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~ 69 (93)
+.|+..|+++.++ .+++|.+++.+||+.--++
T Consensus 10 k~FL~tLi~la~~------~~pev~~~Vr~LVq~Ll~~ 41 (105)
T 2h7b_A 10 KRFLTTLQQFGND------ISPEIGERVRTLVLGLVNS 41 (105)
T ss_dssp HHHHHHHHHSHHH------HCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcc------CChHHHHHHHHHHHHHHhC
Confidence 7899999999874 3678888888888887654
No 37
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=62.86 E-value=7.6 Score=23.84 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHcCc
Q psy12750 55 VRTEIIELLYLWTLEYPRESK-IREAYEMLKKQQV 88 (93)
Q Consensus 55 Vk~kil~liq~Wa~~f~~~~~-i~~~Y~~Lk~~G~ 88 (93)
+-+..+.+-..|.+.=|=.|. +.++|+.|+.+|-
T Consensus 53 lVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~~g~ 87 (89)
T 1bh9_B 53 VVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQ 87 (89)
T ss_dssp HHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHcCC
Confidence 345555666667654333353 9999999999994
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=62.58 E-value=7.5 Score=26.96 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHH----HHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFR----FLNELIKLISPKYLGNLTPDAVRTEIIELLYL 65 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~----Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~ 65 (93)
|+++..-++..|..|+++.|... +..+. ++..+.+++++ ++.+||+-...++-.
T Consensus 152 npkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~d------~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 152 LPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAGH------GDRNVRSQTMNLIVE 209 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHTC------SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHhC------CcHHHHHHHHHHHHH
Confidence 67888999999999999877532 22233 44456677765 478999988887643
No 39
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=62.21 E-value=7.4 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcC
Q psy12750 53 DAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQ 87 (93)
Q Consensus 53 ~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G 87 (93)
..+++++.+|+..|...-...+.+..++..|++-|
T Consensus 135 ~d~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~ 169 (191)
T 2gf5_A 135 RNLTERVRESLRIWKNTEKENATVAHLVGALRSCQ 169 (191)
T ss_dssp SCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcC
Confidence 45789999999999987766666777777777655
No 40
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=62.03 E-value=14 Score=24.61 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccCH-HHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHH
Q psy12750 9 LTIWVLEACMQHCGP-QFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLW 66 (93)
Q Consensus 9 ~aL~LLd~cvkNCG~-~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~W 66 (93)
.-|.+|+..+.-+.+ .+|..+-+..+++.+..-+.|-..|..++..||+.++.++...
T Consensus 36 ~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l 94 (145)
T 2xpp_A 36 GKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM 94 (145)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC
Confidence 345666666665554 4677777778888888888887777788899999999998764
No 41
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=61.93 E-value=6.7 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.484 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCc
Q psy12750 52 PDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQV 88 (93)
Q Consensus 52 ~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~ 88 (93)
+..+++++.+|+..|...-....-+..++..|++-|-
T Consensus 54 p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r 90 (111)
T 2yqf_A 54 PNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDR 90 (111)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCc
Confidence 3578999999999999875555567778887776653
No 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=61.52 E-value=16 Score=26.03 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHhccCH-HHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC----CchHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGP-QFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR----ESKIR 77 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~-~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~----~~~i~ 77 (93)
++++..-|+..+-.+...|+. .+...+ .+.+..+.+++.+ +++.||......+...+..+.+ .+.+.
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD------PSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHH
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 455666677777777766652 222222 3466667777765 4689999999999999988754 24566
Q ss_pred HHHHHHH
Q psy12750 78 EAYEMLK 84 (93)
Q Consensus 78 ~~Y~~Lk 84 (93)
.++..|-
T Consensus 451 ~ll~~Ll 457 (462)
T 1ibr_B 451 PLLQCLI 457 (462)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=60.40 E-value=25 Score=24.27 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHhccC-HHHH-hhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhC------CCC-
Q psy12750 3 PLRLVILTIWVLEACMQHCG-PQFH-AEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEY------PRE- 73 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG-~~fh-~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f------~~~- 73 (93)
|..|+..|+..+..+.+..+ +.|. ... ..++..+...+.++ ...|++.+.+.+..+.... ...
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~ll~~l~dk------k~~V~~aa~~al~~i~~~~~~~~~~~~l~ 145 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPLLDRTKEK------KPSVIEAIRKALLTICKYYDPLASSGRNE 145 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHHHHGGGCC------CHHHHHHHHHHHHHHHHHSCTTCTTCTTH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHccccccCCcHH
Confidence 55678889999999888777 5552 111 22444444444443 5789999999999999987 212
Q ss_pred chHHHHHHHHHHc
Q psy12750 74 SKIREAYEMLKKQ 86 (93)
Q Consensus 74 ~~i~~~Y~~Lk~~ 86 (93)
+-+.++...|+.+
T Consensus 146 ~ll~~l~~~l~~k 158 (249)
T 2qk1_A 146 DMLKDILEHMKHK 158 (249)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCC
Confidence 2356666655543
No 44
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=60.22 E-value=5.9 Score=24.67 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCc
Q psy12750 14 LEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQV 88 (93)
Q Consensus 14 Ld~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~ 88 (93)
++.+..|-|..+..-.-.-.|.+.=++-+.. -+..+++++.+|+..|...-....-+..++..|++-|.
T Consensus 21 ~~~ia~~lg~~Wk~LAr~Lg~~~~~I~~ie~------~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 21 IEVFANKLGEQWKILAPYLEMKDSEIRQIEC------DSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGL 89 (110)
T ss_dssp HHHHHHHHTTTHHHHTTTTTCCHHHHHHHHH------HCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHH------cCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcCc
Confidence 3444555565443333333454443333332 14568999999999999865444557777877777653
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=58.10 E-value=48 Score=24.35 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
++++...++..+..+.+.+|..+ ....++..+.+.+.+ ++..||...+..+......+.
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVD------HVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGC------SSHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHHhC
Confidence 45666677777777777777543 234566666666654 356788888777777766654
No 46
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=55.38 E-value=37 Score=25.20 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
+..++..|+..|-.+..++.+.....+.....+..|..++.. .+.+|+..++..|..-..
T Consensus 384 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 384 EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC------PDIRIVTVCLEGLENILK 443 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHH
Confidence 346778888888888888778887888778889999999975 367888888887766543
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=55.37 E-value=36 Score=25.02 Aligned_cols=37 Identities=11% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCC
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISP 44 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~ 44 (93)
+.+...++..+..+...||..++. ..++..|.+++.+
T Consensus 494 ~~~R~~a~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d 530 (588)
T 1b3u_A 494 YLHRMTTLFCINVLSEVCGQDITT----KHMLPTVLRMAGD 530 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHH----HHHHHHHHhhCCC
Confidence 344444555555555555554443 2344444444444
No 48
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=55.36 E-value=3.8 Score=24.59 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHcCcccc
Q psy12750 50 LTPDAVRTEIIELLYLWTLEYPRESK-IREAYEMLKKQQVVQA 91 (93)
Q Consensus 50 ~~~~~Vk~kil~liq~Wa~~f~~~~~-i~~~Y~~Lk~~G~~f~ 91 (93)
.+...||.+|.++|+..- +..|. =.++-+.|+.+|+..+
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed---~~kPlSD~~I~~~L~~~Gi~Ia 55 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENED---KRKPYSDQEIANILKEKGFKVA 55 (76)
T ss_dssp CCHHHHHHHHHHHGGGCC---SSSCCCHHHHHHHHTTTSSCCC
T ss_pred ccHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHcCCCcc
Confidence 456789999888887643 22332 3556677889998764
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=55.16 E-value=72 Score=24.81 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHhccCH-HHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGP-QFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR 72 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~-~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~ 72 (93)
++++...|+..+-.+...|++ .+...+ ...+..+.+.+.+ ++..||...+..+..++..++.
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d------~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD------PSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHCGG
T ss_pred ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHhCch
Confidence 456667777777777777773 333211 3355566666654 4688999999999999998753
No 50
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=54.52 E-value=24 Score=25.15 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhccCHH----------HHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQ----------FHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~----------fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
+..++..|+..|..+...+... +-..+.....++.|..+... ++.+|+++.+.+|..+-
T Consensus 374 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 374 DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH------ENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH------HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHC
Confidence 4577888888888888866532 33344444446667776643 46789999999998765
No 51
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=52.94 E-value=43 Score=21.55 Aligned_cols=62 Identities=13% Similarity=-0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR 72 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~ 72 (93)
..++..|+..|-.+.. +.+.....+.....+..|.+++.+ .+.+|+...+..+..-+...++
T Consensus 184 ~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 184 SEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTS------TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCC------CcHHHHHHHHHHHHHHHcCCCc
Confidence 4677777777777765 345556677777888999999975 3678999999999888775543
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=51.31 E-value=35 Score=24.42 Aligned_cols=59 Identities=10% Similarity=0.290 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE 69 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~ 69 (93)
..++..|..+|-.+..+ +......+....++..|+.++... +..|++.++..|..-...
T Consensus 181 ~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~------d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE------HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC------CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC------ChhHHHHHHHHHHHHHhC
Confidence 45666677777666655 555666777788889999999753 568999999988777665
No 53
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=49.66 E-value=58 Score=24.21 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHhccCH--HHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy12750 3 PLRLVILTIWVLEACMQHCGP--QFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE 69 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~--~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~ 69 (93)
+..++..|+..|-.+...+++ .....+.....+..|..++.. .++.|+..++..+......
T Consensus 396 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI------ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT------CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHHh
Confidence 356777888888888877765 555566666788888888865 3678999998888777653
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=47.45 E-value=87 Score=23.49 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYL 65 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~ 65 (93)
..++..|...|-.+..+|...-...+.+...+..|..++.. .+.++...+++.|..
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~------~d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA------KDTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC------CCHHHHHHHHHHHHH
Confidence 34555566666666666665555666677778888888865 367788887776543
No 55
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=46.91 E-value=74 Score=22.50 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
..++..|...|-.+..++.+..-..+.+...+..|..++.. .+.+|+..++..+.....
T Consensus 332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV------MDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC------CCHHHHHHHHHHHHHHHH
Confidence 45666777777777666555444555566788888888875 367899999888877665
No 56
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=44.67 E-value=62 Score=23.95 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHhccCH----------HHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGP----------QFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~----------~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
+..++..++..|..+++.+.. .+...+.....++.+..+... .+++|+++...+++...
T Consensus 427 d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~------~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH------DNNEIYEKAVKILEAYW 495 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC------SSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC------CCHHHHHHHHHHHHHHC
Confidence 356788888888888876654 345555555667777777643 47899999999998654
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=43.72 E-value=62 Score=20.74 Aligned_cols=59 Identities=14% Similarity=-0.028 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
+..++..|+..|-.+..+.. .....+.....+..|.+++.. .+..|+...+..+..-+.
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHc
Confidence 35678888888888877665 455666777889999999975 357888888888876654
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=43.19 E-value=48 Score=21.62 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
..++..|+..|-.+... .......+.....+..|++++... +++|+...+..+..-+.
T Consensus 26 ~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 26 MQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP------NEQILQEALWALSNIAS 83 (252)
T ss_dssp SSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC------CHHHHHHHHHHHHHHhc
Confidence 34677777777555544 455556777778899999999753 57888888888776654
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=42.43 E-value=1.2e+02 Score=23.59 Aligned_cols=64 Identities=6% Similarity=0.059 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR 72 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~ 72 (93)
+..+...|+.++..+++.+|..+...+ .+++..+.+.++.. ..+.++|.-++..+..-+..+++
T Consensus 663 ~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~----~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLCRALQSNIIPFC--DEVMQLLLENLGNE----NVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCT----TSCGGGHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhCCc----cccHHhhHHHHHHHHHHHHHhch
Confidence 456677788899999999997664432 46666676777542 13567888888888777775544
No 60
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=41.77 E-value=60 Score=24.12 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHhccCHH----------HHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQ----------FHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLE 69 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~----------fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~ 69 (93)
+..++..|+..|..+...|... +...+.....++.|..|... .+..|+++...+|...-..
T Consensus 441 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~------~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 441 DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN------ENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC------SCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHCCc
Confidence 4567888888888888877543 33344445566677777653 4688999999999765433
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=41.71 E-value=89 Score=24.23 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCC
Q psy12750 5 RLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPR 72 (93)
Q Consensus 5 ~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~ 72 (93)
.+...|+.++..+++.+|..|...+ ..++..+.+.+.+. ..+.+||..++..+..-+..+++
T Consensus 654 ~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~----~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 654 PVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNP----NARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCT----TCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCc----cccHhhhHHHHHHHHHHHHHhhh
Confidence 4566788889999999997664322 34455555555432 13467999888888777766543
No 62
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=40.90 E-value=9.1 Score=18.95 Aligned_cols=9 Identities=22% Similarity=0.977 Sum_probs=7.0
Q ss_pred HHHHHhccC
Q psy12750 14 LEACMQHCG 22 (93)
Q Consensus 14 Ld~cvkNCG 22 (93)
-|-|+|||-
T Consensus 19 q~yclknck 27 (30)
T 2li3_A 19 QDYCLKNCR 27 (30)
T ss_dssp HHHHHHHSC
T ss_pred hHHHHhcCc
Confidence 367999994
No 63
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=40.40 E-value=1.4e+02 Score=23.90 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
+.+++..|...|-.+..+ +.....+.....++.|.+++.. .+.+|+...+..+...+..-+
T Consensus 606 ~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~------~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 606 IENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS------RNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp CHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCh
Confidence 356777777777777643 5666677777778888888865 368899999988888776544
No 64
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=40.23 E-value=70 Score=22.79 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEY 70 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f 70 (93)
+..++-.|...|-.++.|. +..+..|....-+..|++++... ++..|+.+.+..|-.-...+
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCC
Confidence 4578888999999888863 55667777778899999999742 35789888887776655433
No 65
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=38.73 E-value=79 Score=25.10 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC--ch----HH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE--SK----IR 77 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~--~~----i~ 77 (93)
..|...|..++..+.+-||..|...+. .|+..+.+.+.+ ....|+.-+...+..-+..+..+ |. +.
T Consensus 643 ~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~------~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~ 714 (852)
T 4fdd_A 643 PEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNP------EFISVCNNATWAIGEISIQMGIEMQPYIPMVLH 714 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCT------TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCc------cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 567888999999999999987755433 366666666643 35678888887777777666432 32 44
Q ss_pred HHHHHHHH
Q psy12750 78 EAYEMLKK 85 (93)
Q Consensus 78 ~~Y~~Lk~ 85 (93)
.+.+.|+.
T Consensus 715 ~L~~~l~~ 722 (852)
T 4fdd_A 715 QLVEIINR 722 (852)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 44555543
No 66
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=38.66 E-value=53 Score=19.47 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.7
Q ss_pred hhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 28 EVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 28 evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
.|.+++=+++|++-+.|.. ..+++|.+-++++-..+-
T Consensus 4 ~vl~k~~L~~Lv~~idp~~---~ld~~vee~ll~lADdFV 40 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPNE---QLDEDVEEMLLQIADDFI 40 (76)
T ss_dssp CSSCHHHHHHHHHHHCSSC---CCCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHHH
Confidence 4667888999999998863 477889888888844443
No 67
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=38.56 E-value=50 Score=18.51 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHcCc
Q psy12750 50 LTPDAVRTEIIELLYLWTLEYPRES----KIREAYEMLKKQQV 88 (93)
Q Consensus 50 ~~~~~Vk~kil~liq~Wa~~f~~~~----~i~~~Y~~Lk~~G~ 88 (93)
.+..+||..-..|...|-=+-.+++ .|.++|+.|+..+.
T Consensus 27 a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~ 69 (71)
T 2guz_A 27 LTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGI 69 (71)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 3567899988888888865444443 48999999998764
No 68
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=38.34 E-value=41 Score=20.23 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCc
Q psy12750 54 AVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQV 88 (93)
Q Consensus 54 ~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~ 88 (93)
.-.++..+|++.|.........+..+-..|++-|.
T Consensus 39 d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~~l 73 (86)
T 3oq9_A 39 DTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKAEC 73 (86)
T ss_dssp CCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccc
Confidence 34589999999999998766677777777776553
No 69
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.38 E-value=1.3e+02 Score=22.56 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYL 65 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~ 65 (93)
..++..|...|-.+..+|...-...+.....+..|+.++.. .+.++...+++.|..
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~------~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA------KDTKIIQVILDAISN 446 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC------CCHHHHHHHHHHHHH
Confidence 34555566556556555555555566677788888899865 367777777766544
No 70
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=37.36 E-value=57 Score=23.44 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHhccCHH---HHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQ---FHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~---fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
|.+|.+.+|.+|..++..-+.. |+..-+ -.|+-.|+.-+.+ +.+.||+++.+++..-...++
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKlGd------~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKTGE------AKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGGGC------SSHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHHCC
Confidence 6778899999988887665432 222111 2366665544433 468899999999888766543
No 71
>1t0f_C Protein E, transposon TN7 transposition protein TNSC; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli}
Probab=37.25 E-value=16 Score=20.53 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=12.2
Q ss_pred HHHHHHHHcCcccc
Q psy12750 78 EAYEMLKKQQVVQA 91 (93)
Q Consensus 78 ~~Y~~Lk~~G~~f~ 91 (93)
..|+.|+..|++|.
T Consensus 32 s~Ye~L~~~GlI~d 45 (54)
T 1t0f_C 32 TMHERLKGKGVIVD 45 (54)
T ss_dssp CHHHHHHHTTSBCC
T ss_pred HHHHHHHHCCceee
Confidence 48999999999874
No 72
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=36.24 E-value=79 Score=20.03 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHcCc
Q psy12750 53 DAVRTEIIELLYLWTLEYP-RESKIREAYEMLKKQQV 88 (93)
Q Consensus 53 ~~Vk~kil~liq~Wa~~f~-~~~~i~~~Y~~Lk~~G~ 88 (93)
...+++..+|++.|...-. .+..+..++..|++-|.
T Consensus 51 r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l 87 (112)
T 1ich_A 51 RCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDL 87 (112)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhcc
Confidence 4579999999999999884 55678888888887653
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=34.61 E-value=1.2e+02 Score=21.83 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred hhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHc
Q psy12750 28 EVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE--SKIREAYEMLKKQ 86 (93)
Q Consensus 28 evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~--~~i~~~Y~~Lk~~ 86 (93)
..-.++|++++++++.+- -=.|+.-.+.+|-.-+.++++. |.+.+++-+|++.
T Consensus 27 a~~d~~~l~~lI~~LDDD------lwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ks 81 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDD------LWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS 81 (253)
T ss_dssp HHHCHHHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhccH------HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Confidence 344789999999999752 3468999999999999999864 7788888777654
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=34.01 E-value=1e+02 Score=23.17 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
..|.|-|+|+.+-.+|..- .-+..-|.+.+|+..+..++++ ....|.+..|+++..--..-+
T Consensus 173 ~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s------~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 173 DHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS------LSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp CHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHCG
T ss_pred ChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC------ccHHHHHHHHHHHHHHHccCc
Confidence 3578999999999998751 1222334489999999999984 368899999999887765443
No 75
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=33.96 E-value=33 Score=24.81 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKF 32 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~ 32 (93)
||-|++-||.++.-++.-+.+.|.++++++
T Consensus 73 ~w~va~K~LivlH~llreG~~~~~~~l~~~ 102 (299)
T 1hx8_A 73 NWVVVYKSLITTHHLMAYGNERFMQYLASS 102 (299)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence 789999999999999999999888877653
No 76
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=32.80 E-value=33 Score=24.67 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhc
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVG 30 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~eva 30 (93)
||.|++-||.++.-++.-+.+.|.++++
T Consensus 78 ~w~v~~KaLivlH~llreG~~~~l~~~~ 105 (271)
T 3zyl_A 78 SWVVVFKSLITTHHLMVYGNERFIQYLA 105 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7899999999999999999988877764
No 77
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.64 E-value=46 Score=20.65 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCCchHHHHHH
Q psy12750 61 ELLYLWTLEYPRESKIREAYE 81 (93)
Q Consensus 61 ~liq~Wa~~f~~~~~i~~~Y~ 81 (93)
.++++|..|+++ |.+..+-+
T Consensus 23 af~~SW~~Al~~-~eF~aIlr 42 (94)
T 3b4s_A 23 AFSQSWIKALED-SEFLAILR 42 (94)
T ss_dssp HHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHhC-HHHHHHHH
Confidence 588999999994 66544433
No 78
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=31.82 E-value=17 Score=17.20 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=12.6
Q ss_pred hccHHHHHHHHHhhCC
Q psy12750 29 VGKFRFLNELIKLISP 44 (93)
Q Consensus 29 vas~~Fl~~l~kl~~~ 44 (93)
|-|.+|.++|.+++..
T Consensus 4 ipsydfadelakllrq 19 (26)
T 1sn9_A 4 IPSYDFADELAKLLRQ 19 (26)
T ss_dssp BTTBCHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHH
Confidence 5678899999988753
No 79
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=31.79 E-value=16 Score=17.26 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=9.3
Q ss_pred HHHHHHHhccC
Q psy12750 12 WVLEACMQHCG 22 (93)
Q Consensus 12 ~LLd~cvkNCG 22 (93)
.||..|..||.
T Consensus 15 ellrrcldnce 25 (26)
T 2plx_B 15 ELLRRCLDNCE 25 (26)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhccc
Confidence 68889999995
No 80
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=31.10 E-value=60 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHh---CCCCch---------HHHHHHHHHHcC
Q psy12750 55 VRTEIIELLYLWTLE---YPRESK---------IREAYEMLKKQQ 87 (93)
Q Consensus 55 Vk~kil~liq~Wa~~---f~~~~~---------i~~~Y~~Lk~~G 87 (93)
=+.|+-.+.+.|+++ +++.|+ |.+.|..|..++
T Consensus 41 hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~ 85 (219)
T 3pmr_A 41 RMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQV 85 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhh
Confidence 367999999999996 455563 778888887665
No 81
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=30.88 E-value=1.9e+02 Score=22.42 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhccC-HHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 4 LRLVILTIWVLEACMQHCG-PQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG-~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
+++.-.|+..+-++++.|+ ..+...+ ..++..+.+.+.+ +++.||..++..+..++..++
T Consensus 383 ~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d------~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 383 WRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMND------QSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHHG
T ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHHHhh
Confidence 4555566667777777776 3332221 1345555555543 478899999888888887653
No 82
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=30.73 E-value=37 Score=20.44 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=15.3
Q ss_pred CcHHHHHHHHHHHHH-HHHhC
Q psy12750 51 TPDAVRTEIIELLYL-WTLEY 70 (93)
Q Consensus 51 ~~~~Vk~kil~liq~-Wa~~f 70 (93)
.|...-+||||-||. |-+.+
T Consensus 56 dp~~~nEkiLEAIQ~aWidE~ 76 (77)
T 1uj8_A 56 DPQASNEKILEAILLVWLDEA 76 (77)
T ss_dssp CGGGCCHHHHHHHHHHHHHHC
T ss_pred CcccccHHHHHHHHHHHHHhh
Confidence 566778899999887 87653
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=30.69 E-value=76 Score=22.78 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHH---HHHHHhhCCCCCCCCCcHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFL---NELIKLISPKYLGNLTPDAVRTEIIELLY 64 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl---~~l~kl~~~k~~~~~~~~~Vk~kil~liq 64 (93)
|+++-.-.|..+..++.+.|... ...+ ..+.++++++ +..||+-.+..+-
T Consensus 180 N~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D~------d~~VR~aAl~~lv 232 (266)
T 2of3_A 180 NARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGDK------DVNVRNAAINVLV 232 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGCS------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 67888889999999999999872 2245 7788888874 7789998877664
No 84
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=30.53 E-value=63 Score=18.07 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhC
Q psy12750 57 TEIIELLYLWTLEY 70 (93)
Q Consensus 57 ~kil~liq~Wa~~f 70 (93)
..+..-|+.|-.+|
T Consensus 7 ~~lk~~LK~WE~~F 20 (56)
T 2kmu_A 7 RDVRERLQAWERAF 20 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677889999998
No 85
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=30.26 E-value=15 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=29.9
Q ss_pred HHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHH-HHHH
Q psy12750 23 PQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLY-LWTL 68 (93)
Q Consensus 23 ~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq-~Wa~ 68 (93)
..++.-+.+.+|.++|...+..+- .+++.-.++..+++ .|..
T Consensus 31 ~sg~~vl~TeeFW~DL~gFL~qRl----kDe~~A~~l~siFk~AW~s 73 (75)
T 2lo0_A 31 PSGESVVATEAFWDDLQGFLEQRL----KDYDEANKLRVLFKEAWRS 73 (75)
T ss_dssp CCSSTTTTSHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhh
Confidence 356677889999999998887763 35666677776664 3543
No 86
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.20 E-value=85 Score=20.39 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHc
Q psy12750 17 CMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQ 86 (93)
Q Consensus 17 cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~ 86 (93)
+|.|++-.++ +.++++.+++..+.. ..| .-|..||+.|.. -++-+...++|+.|+.+
T Consensus 5 ~~~~~~~~~~------~~~~~~~~~L~~~g~-r~T--~qR~~IL~~L~~----~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 5 MMLIENVEYD------VLLERFKKILRQGGL-KYT--KQREVLLKTLYH----SDTHYTPESLYMEIKQA 61 (162)
T ss_dssp ----CCHHHH------HHHHHHHHHHHHHTC-CCC--HHHHHHHHHHHS----CCSCBCHHHHHHHHHHH
T ss_pred hhhcCCccHH------HHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHh----CCCCCCHHHHHHHHHhh
Confidence 3666665542 334444444443311 113 347788887743 22335678888888776
No 87
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=29.70 E-value=40 Score=24.71 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhcc
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGK 31 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas 31 (93)
||.|++-||.++.-++..+.+.|..++++
T Consensus 78 ~w~vv~KaLivlH~llreG~~~~l~~~~~ 106 (310)
T 3zym_A 78 SWVVVFKSLITTHHLMVYGNERFIQYLAS 106 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 78999999999999999998888776643
No 88
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=29.62 E-value=1.3e+02 Score=21.79 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYL 65 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~ 65 (93)
.+++..|...|-.+... +.....+....-++.|.+++.. .+++|+.+....+..
T Consensus 474 ~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~------~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 474 ENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS------RNEGVATYAAAVLFR 527 (529)
T ss_dssp HHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGC------SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcC------CCHHHHHHHHHHHHh
Confidence 45555555555554422 4555666666677778888764 478899988877754
No 89
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=29.45 E-value=65 Score=22.78 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHh---CCCCch---------HHHHHHHHHHcC
Q psy12750 56 RTEIIELLYLWTLE---YPRESK---------IREAYEMLKKQQ 87 (93)
Q Consensus 56 k~kil~liq~Wa~~---f~~~~~---------i~~~Y~~Lk~~G 87 (93)
+.|+-.+.+.|+++ +++.|+ |..+|..|..++
T Consensus 35 r~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~ 78 (211)
T 3umh_A 35 RERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEA 78 (211)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhh
Confidence 67999999999996 566552 788888887665
No 90
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=28.90 E-value=85 Score=21.94 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHHHHHHHHhccCHHHHhhhcc---HHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 10 TIWVLEACMQHCGPQFHAEVGK---FRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 10 aL~LLd~cvkNCG~~fh~evas---~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
.+..+=.++++||..+-..-+. ..+.+.|..++... ..+..+|..|..++.--...+.
T Consensus 182 ~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~----~ls~Rirfmi~~l~dLR~~~W~ 242 (260)
T 1hu3_A 182 SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKER----KTSSRIRFMLQDVIDLRLCNWV 242 (260)
T ss_dssp HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSC----SSCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHcCCC
Confidence 4455666888899988664432 23455555655433 3578899999999887766664
No 91
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=28.82 E-value=1.1e+02 Score=19.19 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
+..++..|...|-.+..+. +.....+.....+..|++++.. .+.+|+..++..+..-+.
T Consensus 109 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 109 NEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIAS 167 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHHc
Confidence 3566777777777776533 3333455567788999999975 367899999988877764
No 92
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=28.36 E-value=82 Score=21.76 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=31.0
Q ss_pred HhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q psy12750 26 HAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYE 81 (93)
Q Consensus 26 h~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~ 81 (93)
.-++...+|++-+.++-.+ +-...|.++-.|.+ ...+...|+++|+
T Consensus 57 ~g~ftr~ef~~G~~~l~~d------si~~lk~~l~~l~~----~l~d~~~Fk~~Y~ 102 (199)
T 3kev_A 57 TCEFSEKEFVEGLANLQVD------SLEKLKRKLSSLRK----EIEDPSKFRAFYQ 102 (199)
T ss_dssp TTCEEHHHHHHHHHHTTCC------SHHHHHHHHHHHHH----HTTSHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCC------CHHHHHHHHHHHHH----HccCHHHHHHHHH
Confidence 3577889999999887654 45667776666544 4554345777775
No 93
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=26.93 E-value=1.9e+02 Score=21.64 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhccC-----HHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCG-----PQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLW 66 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG-----~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~W 66 (93)
+..++..+|..|..+.+-+. ..+...|-....++.|..|... .+.+|.++...+|..+
T Consensus 414 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~------~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 414 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH------ENESVYKASLNLIEKY 476 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGC------SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHH
Confidence 45677778877777665332 1233334344556666666543 4789999999999876
No 94
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=26.90 E-value=29 Score=17.34 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=9.0
Q ss_pred HHHHHHHhccCH
Q psy12750 12 WVLEACMQHCGP 23 (93)
Q Consensus 12 ~LLd~cvkNCG~ 23 (93)
.||..|..||.+
T Consensus 20 ellrrcldncek 31 (34)
T 2cmy_B 20 ELLRRCLDNCEK 31 (34)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhhhh
Confidence 688999999975
No 95
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=26.74 E-value=1.3e+02 Score=19.39 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
+..++..|+..|-.+..+. +.....+.....+..|++++.. .++.|+..++..+..-+
T Consensus 151 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 151 NEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIA 208 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGC------SSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCC------CCHHHHHHHHHHHHHHh
Confidence 3467777777777776544 3344555667788889999865 36789998888877665
No 96
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=26.32 E-value=1.3e+02 Score=23.33 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHcC
Q psy12750 52 PDAVRTEIIELLYLWTLEYPRES--KIREAYEMLKKQQ 87 (93)
Q Consensus 52 ~~~Vk~kil~liq~Wa~~f~~~~--~i~~~Y~~Lk~~G 87 (93)
+.++|..+...|-.-+..|+.+. -+...-+.|+..|
T Consensus 398 d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 398 EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG 435 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc
Confidence 34555555555555555554332 1333334444444
No 97
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=25.61 E-value=2e+02 Score=21.02 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYP 71 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~ 71 (93)
+..+++.||.+|+-+.|--.......+ -+++++.++++... .++.|.=+.+..+..-=..-+
T Consensus 46 D~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~------~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 46 DETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQ------ENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCS------TTHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHcCCC
Confidence 568999999999999998765554433 46788898888865 478888888888877766555
No 98
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=25.60 E-value=53 Score=20.96 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q psy12750 52 PDAVRTEIIELLYLWTLEYPRESKIREAYEMLKK 85 (93)
Q Consensus 52 ~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~ 85 (93)
+..-.++..+|++.|.........+..+-..|++
T Consensus 45 ~~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~ 78 (115)
T 3ezq_A 45 VQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKK 78 (115)
T ss_dssp SSCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445699999999999876654455555555554
No 99
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=25.19 E-value=43 Score=27.08 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcC
Q psy12750 13 VLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQ 87 (93)
Q Consensus 13 LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G 87 (93)
-|+....|-|..+..-...-.|.+.=++.+... -+..+.+++.+|+..|...-.....+..++..|++-|
T Consensus 500 ~L~~Ia~~LG~DWk~LAr~LG~s~~dId~I~~~-----~p~dl~eQ~~~mL~~W~~r~G~~ATv~~L~~ALr~ig 569 (581)
T 4d8o_A 500 RLAYIADHLGFSWTELARELDFTEEQIHQIRIE-----NPNSLQDQSHALLKYWLERDGKHATDTNLVECLTKIN 569 (581)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCCHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCHHHHHHHcCCCHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHHcC
Confidence 445566777777744443335654422333222 1346789999999999987433345888888888765
No 100
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=24.49 E-value=44 Score=22.58 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHcCccccc
Q psy12750 74 SKIREAYEMLKKQQVVQAW 92 (93)
Q Consensus 74 ~~i~~~Y~~Lk~~G~~f~~ 92 (93)
++.+.+|..||++-+.||-
T Consensus 114 SQLQNTYYKLKk~ei~fEn 132 (170)
T 3fdq_A 114 SQLQNTYYKLKKELIQVED 132 (170)
T ss_dssp HHHHHHHHHHHTTSSCSSC
T ss_pred HHHHHHHHHHHhhhcchhh
Confidence 4699999999999999984
No 101
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=24.12 E-value=83 Score=18.98 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHHHHhCC--------CCc--hHHHHHHHHHHcCcccc
Q psy12750 52 PDAVRTEIIELLYLWTLEYP--------RES--KIREAYEMLKKQQVVQA 91 (93)
Q Consensus 52 ~~~Vk~kil~liq~Wa~~f~--------~~~--~i~~~Y~~Lk~~G~~f~ 91 (93)
..+.+++||+.+..=...++ +.| .+..+...||++|-+.+
T Consensus 17 ~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 17 EGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 35789999999887544332 112 49999999999997654
No 102
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.75 E-value=1.5e+02 Score=18.59 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCc
Q psy12750 54 AVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQV 88 (93)
Q Consensus 54 ~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~ 88 (93)
.-|..||++|.. -.+-+...++|+.|+.+|.
T Consensus 22 ~qR~~Il~~L~~----~~~~~sa~ei~~~l~~~~~ 52 (145)
T 2fe3_A 22 PQRHAILEYLVN----SMAHPTADDIYKALEGKFP 52 (145)
T ss_dssp HHHHHHHHHHHH----CSSCCCHHHHHHHHGGGCT
T ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHhCC
Confidence 457788888764 1222446666666666543
No 103
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=22.62 E-value=76 Score=19.44 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHcCccc
Q psy12750 62 LLYLWTLEYPRESKIREAYEMLKKQQVVQ 90 (93)
Q Consensus 62 liq~Wa~~f~~~~~i~~~Y~~Lk~~G~~f 90 (93)
.++.|...++-.|.+.++.+.|++.|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 98 (201)
T 4ap9_A 70 TFLRTREKVNVSPEARELVETLREKGFKV 98 (201)
T ss_dssp HHHHGGGGCCCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHCCCeE
Confidence 34556667776789999999999999864
No 104
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=22.50 E-value=46 Score=15.93 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=11.8
Q ss_pred CcHHHHHHHHHHHHH
Q psy12750 51 TPDAVRTEIIELLYL 65 (93)
Q Consensus 51 ~~~~Vk~kil~liq~ 65 (93)
.+.+||+|+-+.|.+
T Consensus 7 ASteVKqkLqefll~ 21 (26)
T 1tqe_X 7 ASTEVKQKLQEFLLS 21 (26)
T ss_dssp SCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 456899999988764
No 105
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=22.22 E-value=1.7e+02 Score=21.85 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHhcc---C--HHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHC---G--PQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLW 66 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNC---G--~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~W 66 (93)
+..++..+|..|..+.+-+ | ..+...|-.-..++.|..|... .+.+|.++...+|..+
T Consensus 433 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~------~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 433 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH------ENESVYKASLNLIEKY 495 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGC------SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcC------CCHHHHHHHHHHHHHH
Confidence 3456667777776665422 1 1222223233344555555432 5789999999999886
No 106
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=21.99 E-value=2.3e+02 Score=20.44 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTL 68 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~ 68 (93)
..++..|+..|-.+..+-.. -...+.....+..|++++.. .+.+++..+...+..|+.
T Consensus 115 ~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~------~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 115 DSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNK------TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGC------CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhc------CCHHHHHHHHHHHHHHHh
Confidence 46777888777776654322 24556667788899999975 367888888888888875
No 107
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=21.97 E-value=1.3e+02 Score=20.67 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=30.1
Q ss_pred HhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q psy12750 26 HAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYE 81 (93)
Q Consensus 26 h~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~ 81 (93)
.-++...+|++-+.++-.+ +-...|.++-.| ...+.+...|+++|+
T Consensus 55 ~g~ftr~ef~~G~~~l~~d------si~~lk~~l~~l----~~~l~d~~~Fk~~Y~ 100 (200)
T 3tdu_A 55 QCEFSKQEFMDGMTELGCD------SIEKLKAQIPKM----EQELKEPGRFKDFYQ 100 (200)
T ss_dssp TTCEEHHHHHHHHHHHTCS------SHHHHHHTHHHH----HHHTTSHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHHccc------cHHHHHHHHHHH----HHHccCHHHHHHHHH
Confidence 4577888999999887544 345566655554 555554335777775
No 108
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=21.76 E-value=2.2e+02 Score=23.65 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCC---chHHHHH
Q psy12750 4 LRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRE---SKIREAY 80 (93)
Q Consensus 4 ~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f~~~---~~i~~~Y 80 (93)
..++..|+..+-.+.+.+|+.+...+ .++++.+...+.+ ++..||.+.+..+..-+...++. +-+..+.
T Consensus 148 ~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~------~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~ 219 (1230)
T 1u6g_C 148 VSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS------PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC------SSHHHHHHHHHHHHHHTTTC----CTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46777788888888777776443211 4455555555543 35789999999888877655432 2255555
Q ss_pred HHHHH
Q psy12750 81 EMLKK 85 (93)
Q Consensus 81 ~~Lk~ 85 (93)
+.|+.
T Consensus 220 ~~L~~ 224 (1230)
T 1u6g_C 220 SELSK 224 (1230)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 55654
No 109
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=21.57 E-value=1.8e+02 Score=21.47 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=38.6
Q ss_pred hhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHhC--C--------------CCchHHHHHHHHHHcCcccc
Q psy12750 28 EVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEY--P--------------RESKIREAYEMLKKQQVVQA 91 (93)
Q Consensus 28 evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~Wa~~f--~--------------~~~~i~~~Y~~Lk~~G~~f~ 91 (93)
.+-+.+|++.+.+....... .-..|+..|+..-.++. + +-|.+.++.+.|++.||..+
T Consensus 280 ~l~d~~f~~~~l~~~~~~~~------~~~~~~~~ll~~~~~E~~~p~~y~~~~~~~~~~~~~p~~~~~~~~L~~~Gy~~s 353 (378)
T 2dul_A 280 PLKDEKIVSKMVKEAESLSL------ARKKQALKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISALREQGYEAT 353 (378)
T ss_dssp CSBCHHHHHHHHHHHHTSCC------TTHHHHHHHHHHHHHSCCSSCCEEHHHHHHHHTCCBCCHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHhhhccc------chHHHHHHHHHHHHHhcCCCcEEeHHHHHHHcCCCCCCHHHHHHHHHHCCCEEE
Confidence 34578999998777643211 12356667777666653 1 12568999999999998754
No 110
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=21.48 E-value=1.6e+02 Score=18.96 Aligned_cols=39 Identities=10% Similarity=-0.097 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHcCccc
Q psy12750 52 PDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQVVQ 90 (93)
Q Consensus 52 ~~~Vk~kil~liq~Wa~~f~~~~~i~~~Y~~Lk~~G~~f 90 (93)
...+.....+....+.....-.|.+.++.+.|+++|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 131 (250)
T 3l5k_A 93 KEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPF 131 (250)
T ss_dssp HHHHHHHHHHHHHHHGGGCCBCTTHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhCCCcE
Confidence 345555555555554444444578999999999999864
No 111
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=20.77 E-value=92 Score=22.05 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=7.5
Q ss_pred CcHHHHHHHHHHHH
Q psy12750 51 TPDAVRTEIIELLY 64 (93)
Q Consensus 51 ~~~~Vk~kil~liq 64 (93)
.+..||..|..++.
T Consensus 262 ls~RirFml~dlid 275 (284)
T 2vso_E 262 ISSRIKFKLIDIKE 275 (284)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44555555555554
No 112
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=20.47 E-value=98 Score=19.09 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.1
Q ss_pred CcHHHHHHHHHHHHHHHHhCCC
Q psy12750 51 TPDAVRTEIIELLYLWTLEYPR 72 (93)
Q Consensus 51 ~~~~Vk~kil~liq~Wa~~f~~ 72 (93)
++++|+.....||..|......
T Consensus 67 ~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 67 SDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999998754
No 113
>1bvp_1 Bluetongue virus coat protein VP7; trimer, viral protein; 2.60A {Bluetongue virus} SCOP: a.115.1.1 b.19.1.1 PDB: 2btv_P
Probab=20.28 E-value=20 Score=27.32 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhccCHHHHhhhccHHH
Q psy12750 6 LVILTIWVLEACMQHCGPQFHAEVGKFRF 34 (93)
Q Consensus 6 v~l~aL~LLd~cvkNCG~~fh~evas~~F 34 (93)
..-+||+++++|+.+...+.|.+-.--+-
T Consensus 4 iaARAlsv~~~c~t~~D~R~~~~~~v~e~ 32 (349)
T 1bvp_1 4 IAARALTVMRACATLQEARIVLEANVMEI 32 (349)
T ss_dssp HHHHHHHHHHHHTTCCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcceecCccHHHH
Confidence 46789999999999999998877655543
No 114
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=20.26 E-value=2.9e+02 Score=21.13 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYL 65 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~~k~~~~~~~~~Vk~kil~liq~ 65 (93)
+.+++..|+..|..+..+ +.....+....-++.|.+++.. .+++|+......+..
T Consensus 470 ~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~------~~~~vr~~A~~aL~~ 524 (644)
T 2z6h_A 470 IENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS------RNEGVATYAAAVLFR 524 (644)
T ss_dssp CHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcC------CCHHHHHHHHHHHHH
Confidence 356777777777777654 4455555555566778888764 367787777666654
No 115
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=20.17 E-value=2.9e+02 Score=21.53 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHhhhccHHHHHHHHHhhC-CCCCCCCCcHHHHHHHHHHHHHHH
Q psy12750 3 PLRLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLIS-PKYLGNLTPDAVRTEIIELLYLWT 67 (93)
Q Consensus 3 ~~~v~l~aL~LLd~cvkNCG~~fh~evas~~Fl~~l~kl~~-~k~~~~~~~~~Vk~kil~liq~Wa 67 (93)
+.++++.||..+..+++..+. +..+ .++...+...+. + ++..||.+.++++..-+
T Consensus 342 ~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d------~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 342 ETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTE------RDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp CHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTC------CCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccC------CCHhHHHHHHHHHHHHc
Confidence 467888888888777766541 1111 223344444444 2 35667777777765443
No 116
>1dpj_B IA3, proteinase inhibitor IA3 peptide; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: a.137.7.1 PDB: 1g0v_B*
Probab=20.16 E-value=30 Score=17.20 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCCCch-HHHHHHH
Q psy12750 56 RTEIIELLYLWTLEYPRESK-IREAYEM 82 (93)
Q Consensus 56 k~kil~liq~Wa~~f~~~~~-i~~~Y~~ 82 (93)
++|+-+++|+=.+.+.++.+ +.++|..
T Consensus 4 qqkvseifqsskeklqgdakvvsdafkk 31 (33)
T 1dpj_B 4 QQKVSEIFQSSKEKLQGDAKVVSDAFKK 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhHHHhccchHHHHHHHHh
Confidence 46677777777777776654 5666644
Done!