RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12750
         (93 letters)



>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 145

 Score =  103 bits (259), Expect = 8e-31
 Identities = 51/84 (60%), Positives = 65/84 (77%)

Query: 7   VILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLW 66
            I  + VLE CM+ CG +FH EVGKFRFLNELIK++SPKYLG+ T + V+ +I+ELLY W
Sbjct: 62  AIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 121

Query: 67  TLEYPRESKIREAYEMLKKQQVVQ 90
           T+  P E KI EAY+MLKKQ +V+
Sbjct: 122 TVGLPEEVKIAEAYQMLKKQGIVK 145


>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 98.0 bits (244), Expect = 2e-28
 Identities = 45/83 (54%), Positives = 63/83 (75%)

Query: 7   VILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLW 66
            +  + VLE CM HCG +FH+EV KFRFLNELIK++SPKYLG+     V+  +IE+L+ W
Sbjct: 55  ALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114

Query: 67  TLEYPRESKIREAYEMLKKQQVV 89
           T+ +P + KIR+AY+MLKKQ ++
Sbjct: 115 TVWFPEDIKIRDAYQMLKKQGII 137


>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 151

 Score = 96.8 bits (241), Expect = 5e-28
 Identities = 49/85 (57%), Positives = 67/85 (78%)

Query: 5   RLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLY 64
              +  + VLEACM++CG +FH EVGKFRFLNELIK++SPKYLG+   + V+T++IELLY
Sbjct: 54  WEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 113

Query: 65  LWTLEYPRESKIREAYEMLKKQQVV 89
            WT+  P E+KI++AY MLK+Q +V
Sbjct: 114 SWTMALPEEAKIKDAYHMLKRQGIV 138


>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 153

 Score = 73.3 bits (180), Expect = 7e-19
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 5   RLVILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLY 64
             V+L + VLE C+++CG +FH  V    F+  +  L+      N  P  V  +++ L+ 
Sbjct: 65  HEVMLALTVLETCVKNCGHRFHVLVASQDFVESV--LVRTILPKNNPPTIVHDKVLNLIQ 122

Query: 65  LWTLEY---PRESKIREAYEMLKKQ 86
            W   +   P  + +   YE L+++
Sbjct: 123 SWADAFRSSPDLTGVVTIYEDLRRK 147


>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 145

 Score = 69.9 bits (171), Expect = 2e-17
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 7   VILTIWVLEACMQHCGPQFHAEVGKFRFLNELIKLISPKYLGNLTPDAVRTEIIELLYLW 66
              ++ VLE+ +++CG   H EV            +          + VR +++EL+  W
Sbjct: 59  SCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-----PHENVRQKMLELVQTW 113

Query: 67  TLEYPRESK---IREAYEMLKKQQVV 89
              +    K   I++   +LK +   
Sbjct: 114 AYAFRSSDKYQAIKDTMTILKAKGHT 139


>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 24.5 bits (53), Expect = 1.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 35  LNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQVVQA 91
           L  LI+ + P   G +T   +  +  ELL++        SK+ EA  +L+  Q  +A
Sbjct: 74  LFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 130


>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor
          TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 97

 Score = 23.6 bits (51), Expect = 2.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 33 RFLNELIKLISPKYLGNLTPDAVRTEIIELLY 64
           FL+ LIKL S       T   V+  +  LL 
Sbjct: 16 NFLSTLIKLASSGKQSTETAANVKELVQNLLD 47


>d1enwa_ a.5.4.1 (A:) Elongation factor TFIIS domain 2 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 114

 Score = 23.3 bits (50), Expect = 4.6
 Identities = 3/16 (18%), Positives = 9/16 (56%)

Query: 49 NLTPDAVRTEIIELLY 64
           +    +R ++++ LY
Sbjct: 16 AIYHHKLRDQVLKALY 31


>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 23.2 bits (50), Expect = 4.8
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 61 ELLYLWTLEYPRESKIREAYEMLKKQQVVQAW 92
          E+  L   +   E   +EA    +  +  Q  
Sbjct: 56 EVFPLLESDELFEQHYKEASAAYESFKKEQEQ 87


>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan
          (Trypanosoma cruzi) [TaxId: 5693]}
          Length = 85

 Score = 22.8 bits (49), Expect = 5.2
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 35 LNELIKLISPKYLGNLTPDAVRTEIIELLYLWTLEYPRESKIREAYEMLKKQQVV 89
          L   I  I+P     +T   +  +  E+L L       ++K++EA E+L +   V
Sbjct: 31 LYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHMNV 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 358,756
Number of extensions: 14380
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 13
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)