Query psy12758
Match_columns 308
No_of_seqs 254 out of 1727
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:53:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 2.7E-47 5.9E-52 357.2 16.7 196 61-308 91-286 (519)
2 KOG0330|consensus 100.0 3.9E-47 8.5E-52 337.8 15.1 192 58-308 58-250 (476)
3 KOG0338|consensus 100.0 1.7E-46 3.6E-51 343.2 11.2 191 61-307 181-372 (691)
4 KOG0335|consensus 100.0 3E-45 6.6E-50 338.4 13.4 203 61-308 74-277 (482)
5 COG0513 SrmB Superfamily II DN 100.0 2.7E-44 5.9E-49 347.0 19.9 191 60-307 28-219 (513)
6 PTZ00110 helicase; Provisional 100.0 5E-42 1.1E-46 334.0 19.9 193 61-307 130-322 (545)
7 KOG0342|consensus 100.0 2.1E-42 4.6E-47 315.6 14.6 193 61-308 82-276 (543)
8 KOG0339|consensus 100.0 4.9E-42 1.1E-46 313.8 13.6 196 58-307 219-415 (731)
9 KOG0345|consensus 100.0 3.3E-41 7.1E-46 306.2 17.0 194 60-307 3-202 (567)
10 PRK04837 ATP-dependent RNA hel 100.0 4.5E-40 9.7E-45 312.5 20.9 197 61-307 8-204 (423)
11 KOG0348|consensus 100.0 3.1E-41 6.8E-46 310.2 12.2 198 61-307 136-345 (708)
12 KOG0336|consensus 100.0 2.2E-41 4.7E-46 302.8 10.3 198 57-308 214-413 (629)
13 KOG0341|consensus 100.0 6.4E-42 1.4E-46 304.5 5.9 197 61-308 170-372 (610)
14 KOG0343|consensus 100.0 7.2E-41 1.6E-45 308.7 13.0 194 58-307 66-260 (758)
15 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-40 1.2E-44 318.3 19.8 197 58-307 117-314 (518)
16 KOG0340|consensus 100.0 5.4E-41 1.2E-45 295.6 11.1 188 61-307 7-198 (442)
17 PRK10590 ATP-dependent RNA hel 100.0 1.5E-39 3.3E-44 311.3 20.2 193 62-307 2-194 (456)
18 KOG0347|consensus 100.0 3.2E-40 6.9E-45 304.4 14.0 205 61-307 181-390 (731)
19 PRK11776 ATP-dependent RNA hel 100.0 2.6E-39 5.6E-44 310.3 20.3 188 61-307 4-192 (460)
20 KOG0346|consensus 100.0 4.7E-40 1E-44 296.5 12.0 195 61-308 19-216 (569)
21 KOG0333|consensus 100.0 1.6E-39 3.4E-44 298.5 15.0 204 58-307 241-466 (673)
22 KOG0326|consensus 100.0 1.9E-40 4E-45 288.7 8.0 192 57-307 81-272 (459)
23 PRK04537 ATP-dependent RNA hel 100.0 7.8E-39 1.7E-43 312.8 20.3 197 61-307 9-206 (572)
24 PRK11634 ATP-dependent RNA hel 100.0 1.2E-38 2.5E-43 313.6 20.9 188 61-307 6-194 (629)
25 KOG0328|consensus 100.0 1.1E-39 2.3E-44 279.8 10.1 191 58-307 24-214 (400)
26 PRK11192 ATP-dependent RNA hel 100.0 9.4E-38 2E-42 297.6 22.1 189 62-305 2-190 (434)
27 KOG0334|consensus 100.0 4E-39 8.6E-44 316.6 9.8 196 58-307 361-560 (997)
28 PRK01297 ATP-dependent RNA hel 100.0 1.4E-36 3E-41 292.5 21.8 196 61-306 87-283 (475)
29 KOG0337|consensus 100.0 5.6E-38 1.2E-42 281.8 11.1 188 61-306 21-208 (529)
30 PTZ00424 helicase 45; Provisio 100.0 6.1E-35 1.3E-39 275.4 19.9 188 60-306 27-214 (401)
31 cd00268 DEADc DEAD-box helicas 100.0 5.9E-34 1.3E-38 244.2 20.5 188 63-307 1-188 (203)
32 KOG4284|consensus 100.0 5E-35 1.1E-39 274.2 10.3 196 52-307 16-213 (980)
33 KOG0327|consensus 100.0 2E-34 4.4E-39 256.9 11.4 190 59-307 24-214 (397)
34 KOG0329|consensus 100.0 8.9E-34 1.9E-38 240.4 10.2 189 61-308 42-232 (387)
35 TIGR03817 DECH_helic helicase/ 100.0 3.1E-32 6.8E-37 272.9 18.9 187 61-306 12-207 (742)
36 PRK02362 ski2-like helicase; P 100.0 4.2E-31 9.2E-36 266.3 18.0 182 61-305 1-183 (737)
37 KOG0350|consensus 100.0 4.2E-31 9E-36 241.9 12.6 173 62-288 128-325 (620)
38 PRK00254 ski2-like helicase; P 100.0 2.4E-30 5.2E-35 260.2 19.1 179 62-305 2-181 (720)
39 PF00270 DEAD: DEAD/DEAH box h 100.0 2.6E-30 5.6E-35 214.8 14.9 165 85-307 1-166 (169)
40 PRK13767 ATP-dependent helicas 100.0 2.5E-29 5.4E-34 256.4 17.9 188 68-305 18-219 (876)
41 KOG0332|consensus 100.0 2E-30 4.3E-35 230.2 7.8 185 61-307 90-278 (477)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.1E-29 1.1E-33 247.1 16.1 189 79-307 12-219 (844)
43 PRK01172 ski2-like helicase; P 100.0 2E-28 4.4E-33 245.0 17.9 180 62-305 2-181 (674)
44 COG1201 Lhr Lhr-like helicases 100.0 5.6E-28 1.2E-32 238.6 15.7 186 68-305 8-195 (814)
45 KOG0344|consensus 99.9 2E-28 4.2E-33 228.8 8.4 194 61-307 132-335 (593)
46 PRK09401 reverse gyrase; Revie 99.9 7.6E-27 1.7E-31 242.0 18.7 167 79-306 77-281 (1176)
47 TIGR01054 rgy reverse gyrase. 99.9 2.2E-25 4.8E-30 231.4 18.3 175 72-307 67-281 (1171)
48 PLN03137 ATP-dependent DNA hel 99.9 2.2E-25 4.7E-30 224.9 17.6 180 61-307 435-630 (1195)
49 TIGR00614 recQ_fam ATP-depende 99.9 9.5E-26 2.1E-30 216.8 12.4 163 78-307 6-176 (470)
50 PRK14701 reverse gyrase; Provi 99.9 1.5E-24 3.3E-29 229.5 18.1 149 72-281 68-234 (1638)
51 KOG0349|consensus 99.9 5.2E-26 1.1E-30 205.6 4.2 243 62-304 3-411 (725)
52 PRK12899 secA preprotein trans 99.9 1.7E-24 3.7E-29 214.6 14.7 149 64-272 65-229 (970)
53 COG1205 Distinct helicase fami 99.9 2.9E-24 6.3E-29 216.8 16.2 180 68-305 55-244 (851)
54 TIGR01389 recQ ATP-dependent D 99.9 4E-24 8.8E-29 211.1 14.2 167 74-307 3-176 (591)
55 PRK11057 ATP-dependent DNA hel 99.9 6.4E-24 1.4E-28 209.7 15.5 169 72-307 13-188 (607)
56 TIGR00580 mfd transcription-re 99.9 2.7E-23 5.8E-28 211.2 17.8 165 68-305 436-611 (926)
57 TIGR00643 recG ATP-dependent D 99.9 6.7E-23 1.4E-27 203.3 17.5 163 72-304 225-397 (630)
58 PRK10689 transcription-repair 99.9 5.1E-23 1.1E-27 213.3 17.3 163 70-305 588-760 (1147)
59 PRK10917 ATP-dependent DNA hel 99.9 7.7E-23 1.7E-27 204.2 18.0 162 70-304 248-420 (681)
60 COG1204 Superfamily II helicas 99.9 2.5E-23 5.4E-28 207.6 13.6 177 67-305 15-192 (766)
61 PRK09751 putative ATP-dependen 99.9 2E-23 4.4E-28 217.9 13.1 158 103-305 1-171 (1490)
62 smart00487 DEXDc DEAD-like hel 99.9 2E-21 4.3E-26 163.8 16.3 169 78-306 3-173 (201)
63 COG1202 Superfamily II helicas 99.9 1.3E-21 2.9E-26 182.5 11.9 186 61-305 194-384 (830)
64 PHA02558 uvsW UvsW helicase; P 99.9 5.6E-21 1.2E-25 185.0 15.3 151 81-306 112-262 (501)
65 KOG0952|consensus 99.8 2E-21 4.3E-26 191.4 9.7 177 78-306 105-288 (1230)
66 PHA02653 RNA helicase NPH-II; 99.8 6.1E-21 1.3E-25 188.2 12.4 158 85-307 166-335 (675)
67 TIGR01970 DEAH_box_HrpB ATP-de 99.8 4.1E-19 8.9E-24 179.0 15.8 149 89-306 8-159 (819)
68 PRK11664 ATP-dependent RNA hel 99.8 3.9E-19 8.5E-24 179.4 14.6 149 89-306 11-162 (812)
69 TIGR01587 cas3_core CRISPR-ass 99.8 8.3E-20 1.8E-24 169.9 8.0 144 100-306 1-168 (358)
70 TIGR00963 secA preprotein tran 99.8 4E-19 8.7E-24 174.4 12.1 131 79-272 53-190 (745)
71 PRK13766 Hef nuclease; Provisi 99.8 1.6E-18 3.4E-23 176.6 15.9 161 80-303 12-172 (773)
72 TIGR03158 cas3_cyano CRISPR-as 99.8 1.3E-18 2.9E-23 161.6 13.7 159 87-306 1-194 (357)
73 PRK05580 primosome assembly pr 99.8 5.9E-18 1.3E-22 168.8 18.9 153 83-305 144-306 (679)
74 PRK12898 secA preprotein trans 99.8 7.2E-19 1.6E-23 171.6 11.9 127 83-271 103-255 (656)
75 PRK09200 preprotein translocas 99.8 1.4E-18 3.1E-23 172.8 13.6 131 79-271 75-212 (790)
76 cd00046 DEXDc DEAD-like helica 99.8 3.6E-17 7.9E-22 130.0 16.1 144 99-303 1-144 (144)
77 TIGR03714 secA2 accessory Sec 99.8 6.4E-18 1.4E-22 166.9 14.0 133 79-272 67-209 (762)
78 PRK13104 secA preprotein trans 99.8 4.2E-18 9.1E-23 169.6 12.6 127 83-271 82-215 (896)
79 COG4581 Superfamily II RNA hel 99.7 8.2E-18 1.8E-22 169.3 12.5 160 77-306 114-273 (1041)
80 KOG0354|consensus 99.7 2.2E-17 4.8E-22 160.7 13.1 175 69-306 48-224 (746)
81 COG0514 RecQ Superfamily II DN 99.7 2.6E-17 5.6E-22 158.1 11.0 168 74-308 7-181 (590)
82 COG1111 MPH1 ERCC4-like helica 99.7 1.7E-16 3.7E-21 147.2 15.0 164 79-306 11-175 (542)
83 KOG0947|consensus 99.7 9E-16 2E-20 150.5 12.6 152 83-307 297-448 (1248)
84 PF04851 ResIII: Type III rest 99.6 9.1E-16 2E-20 128.5 10.6 153 83-305 3-184 (184)
85 PRK09694 helicase Cas3; Provis 99.6 7.2E-16 1.6E-20 156.0 11.6 188 81-306 284-483 (878)
86 PRK12904 preprotein translocas 99.6 9.9E-16 2.1E-20 152.5 12.1 130 79-271 78-214 (830)
87 TIGR01407 dinG_rel DnaQ family 99.6 3E-15 6.6E-20 153.4 15.1 182 69-272 232-454 (850)
88 PRK11131 ATP-dependent RNA hel 99.6 2.2E-15 4.8E-20 155.9 13.7 97 193-305 131-230 (1294)
89 KOG0951|consensus 99.6 2.6E-15 5.6E-20 150.6 10.3 187 67-306 295-487 (1674)
90 PRK13107 preprotein translocas 99.6 6.6E-15 1.4E-19 146.6 10.2 128 83-272 82-216 (908)
91 COG1061 SSL2 DNA or RNA helica 99.6 1.3E-14 2.9E-19 138.3 11.0 149 81-306 34-186 (442)
92 KOG0352|consensus 99.6 7.1E-15 1.5E-19 133.6 8.1 170 71-308 6-191 (641)
93 TIGR00595 priA primosomal prot 99.5 7.2E-14 1.6E-18 135.1 13.4 105 185-304 26-140 (505)
94 TIGR03117 cas_csf4 CRISPR-asso 99.5 1E-13 2.2E-18 135.8 13.6 61 92-169 10-70 (636)
95 TIGR00603 rad25 DNA repair hel 99.5 4.7E-14 1E-18 139.6 10.7 149 82-305 254-413 (732)
96 KOG0351|consensus 99.5 2.7E-14 5.9E-19 144.6 8.0 170 72-308 252-435 (941)
97 KOG0948|consensus 99.5 1.7E-14 3.6E-19 138.8 6.0 153 83-308 129-281 (1041)
98 PRK07246 bifunctional ATP-depe 99.5 1.4E-13 3.1E-18 139.8 13.2 171 76-272 239-450 (820)
99 PRK11448 hsdR type I restricti 99.5 3E-13 6.6E-18 140.6 14.9 159 82-304 412-595 (1123)
100 smart00488 DEXDc2 DEAD-like he 99.5 4.7E-13 1E-17 120.8 14.2 73 83-168 8-84 (289)
101 smart00489 DEXDc3 DEAD-like he 99.5 4.7E-13 1E-17 120.8 14.2 73 83-168 8-84 (289)
102 COG1200 RecG RecG-like helicas 99.5 6.7E-13 1.5E-17 128.0 14.3 168 67-306 246-425 (677)
103 TIGR01967 DEAH_box_HrpA ATP-de 99.5 5.7E-13 1.2E-17 138.6 13.8 159 78-305 59-223 (1283)
104 KOG0950|consensus 99.4 2.5E-13 5.4E-18 134.1 9.4 182 63-305 203-389 (1008)
105 PRK08074 bifunctional ATP-depe 99.4 1.7E-12 3.8E-17 134.0 14.4 173 80-273 255-470 (928)
106 KOG0353|consensus 99.4 1.1E-12 2.5E-17 117.9 10.6 177 64-307 74-264 (695)
107 PRK11747 dinG ATP-dependent DN 99.4 5.5E-12 1.2E-16 126.6 14.6 66 80-164 23-97 (697)
108 KOG0949|consensus 99.4 3.3E-12 7.1E-17 126.1 10.3 159 83-305 511-673 (1330)
109 TIGR00348 hsdR type I site-spe 99.4 4.8E-12 1E-16 126.5 11.8 151 83-303 238-402 (667)
110 COG1197 Mfd Transcription-repa 99.3 1.1E-10 2.5E-15 118.6 15.4 164 71-307 582-757 (1139)
111 PRK13103 secA preprotein trans 99.2 4.2E-11 9.2E-16 119.9 10.7 130 79-271 79-215 (913)
112 COG1110 Reverse gyrase [DNA re 99.2 4.4E-10 9.6E-15 112.2 17.2 133 80-273 80-218 (1187)
113 COG4098 comFA Superfamily II D 99.2 1.3E-10 2.7E-15 103.7 11.8 147 83-307 97-247 (441)
114 TIGR00604 rad3 DNA repair heli 99.2 5.9E-11 1.3E-15 119.8 10.9 174 80-273 7-235 (705)
115 COG1199 DinG Rad3-related DNA 99.2 1.9E-10 4.2E-15 115.3 12.5 74 77-168 9-86 (654)
116 PRK12326 preprotein translocas 99.1 3.8E-10 8.3E-15 110.7 11.5 130 79-271 75-211 (764)
117 PF07517 SecA_DEAD: SecA DEAD- 99.1 1.7E-09 3.7E-14 95.8 14.3 129 81-271 75-210 (266)
118 PRK12906 secA preprotein trans 99.1 3.9E-10 8.5E-15 112.5 11.1 130 79-271 77-213 (796)
119 PF00176 SNF2_N: SNF2 family N 99.1 7.8E-10 1.7E-14 99.8 12.1 105 186-303 60-172 (299)
120 COG1203 CRISPR-associated heli 99.1 3E-10 6.5E-15 114.8 10.1 167 83-306 195-383 (733)
121 PF07652 Flavi_DEAD: Flaviviru 99.1 4.1E-10 9E-15 89.6 7.7 132 98-305 4-138 (148)
122 COG4096 HsdR Type I site-speci 99.1 4.2E-10 9.1E-15 110.5 9.2 151 81-306 163-323 (875)
123 COG1198 PriA Primosomal protei 99.0 6.2E-09 1.3E-13 103.4 14.0 149 83-304 198-360 (730)
124 PRK12902 secA preprotein trans 99.0 1.7E-09 3.7E-14 108.0 10.0 130 79-271 82-218 (939)
125 CHL00122 secA preprotein trans 99.0 2E-09 4.4E-14 107.5 10.3 130 79-271 73-209 (870)
126 PRK04914 ATP-dependent helicas 98.9 2.1E-08 4.5E-13 103.0 13.0 158 83-303 152-315 (956)
127 KOG1132|consensus 98.9 1.3E-08 2.8E-13 100.5 10.8 173 83-272 21-261 (945)
128 COG1643 HrpA HrpA-like helicas 98.9 2.8E-08 6.1E-13 100.2 13.2 67 234-305 139-207 (845)
129 PLN03142 Probable chromatin-re 98.8 6.2E-08 1.4E-12 100.0 14.8 154 83-303 169-329 (1033)
130 KOG0920|consensus 98.8 3.4E-08 7.4E-13 99.6 12.6 155 85-306 175-332 (924)
131 PRK15483 type III restriction- 98.8 3.9E-08 8.5E-13 99.9 11.0 27 99-125 60-86 (986)
132 TIGR02562 cas3_yersinia CRISPR 98.7 6E-08 1.3E-12 98.6 8.8 203 73-307 398-638 (1110)
133 KOG0951|consensus 98.7 4.2E-08 9E-13 99.9 7.1 151 83-305 1143-1301(1674)
134 KOG2340|consensus 98.7 6.7E-08 1.4E-12 90.8 7.9 180 82-289 215-445 (698)
135 PRK12903 secA preprotein trans 98.6 2.8E-07 6.1E-12 92.2 11.5 130 79-271 75-211 (925)
136 COG4889 Predicted helicase [Ge 98.6 1.8E-07 4E-12 92.4 8.8 152 58-272 137-318 (1518)
137 KOG0922|consensus 98.5 1.3E-06 2.8E-11 84.5 12.3 68 234-305 140-207 (674)
138 KOG0926|consensus 98.5 2.5E-07 5.3E-12 90.8 7.3 67 234-303 349-424 (1172)
139 PF13086 AAA_11: AAA domain; P 98.4 1.1E-06 2.3E-11 76.1 8.8 73 84-167 2-75 (236)
140 PRK12900 secA preprotein trans 98.4 5.3E-07 1.1E-11 91.5 7.7 127 83-271 138-271 (1025)
141 KOG1123|consensus 98.4 2.6E-07 5.6E-12 86.5 4.4 149 82-305 301-460 (776)
142 COG0610 Type I site-specific r 98.4 2.7E-06 6E-11 88.3 11.5 106 185-302 304-412 (962)
143 PRK12901 secA preprotein trans 98.3 1.5E-06 3.2E-11 88.4 7.3 128 83-271 169-303 (1112)
144 PF13604 AAA_30: AAA domain; P 98.3 3.3E-06 7.3E-11 72.0 8.5 39 84-123 2-42 (196)
145 PRK14873 primosome assembly pr 98.3 6.5E-06 1.4E-10 82.2 11.1 106 185-304 189-304 (665)
146 PF06862 DUF1253: Protein of u 98.3 9.8E-06 2.1E-10 76.5 11.5 73 234-307 131-229 (442)
147 KOG0385|consensus 98.2 2.4E-05 5.3E-10 76.9 13.0 153 83-302 167-326 (971)
148 COG3587 Restriction endonuclea 98.2 5.6E-06 1.2E-10 82.1 7.7 24 99-122 75-98 (985)
149 PF02562 PhoH: PhoH-like prote 98.1 3.5E-06 7.6E-11 71.9 5.5 45 82-126 3-47 (205)
150 KOG0952|consensus 98.1 3.2E-07 7E-12 92.2 -1.5 145 83-287 927-1074(1230)
151 PF09848 DUF2075: Uncharacteri 98.1 1.5E-05 3.2E-10 74.2 9.5 79 185-285 32-117 (352)
152 KOG0925|consensus 98.1 4E-05 8.6E-10 72.0 11.4 55 61-115 25-79 (699)
153 KOG0390|consensus 98.1 0.00011 2.3E-09 73.6 15.2 160 83-303 238-414 (776)
154 KOG0923|consensus 98.0 2.6E-05 5.7E-10 75.5 9.1 65 235-304 356-421 (902)
155 KOG0924|consensus 98.0 5.1E-05 1.1E-09 73.9 11.0 63 235-304 446-511 (1042)
156 PF14617 CMS1: U3-containing 9 98.0 1.4E-05 3E-10 70.3 6.3 88 180-268 122-211 (252)
157 PRK10536 hypothetical protein; 98.0 3.7E-05 7.9E-10 67.7 8.8 47 79-125 55-101 (262)
158 PRK10875 recD exonuclease V su 98.0 6.4E-05 1.4E-09 74.5 11.6 31 85-115 154-184 (615)
159 PF13872 AAA_34: P-loop contai 98.0 0.00022 4.9E-09 63.9 13.6 172 63-307 23-224 (303)
160 KOG1133|consensus 98.0 8.3E-05 1.8E-09 72.5 11.4 44 83-126 15-62 (821)
161 KOG0387|consensus 97.9 0.00017 3.7E-09 71.4 13.2 166 62-302 191-374 (923)
162 PF02399 Herpes_ori_bp: Origin 97.9 2.7E-05 5.8E-10 77.8 6.7 112 185-306 79-193 (824)
163 TIGR01447 recD exodeoxyribonuc 97.9 0.00024 5.1E-09 70.3 13.3 31 85-115 147-177 (586)
164 KOG1803|consensus 97.8 6.9E-05 1.5E-09 72.1 8.1 65 83-166 185-250 (649)
165 TIGR00376 DNA helicase, putati 97.8 0.00017 3.7E-09 72.1 11.2 67 83-168 157-224 (637)
166 TIGR01448 recD_rel helicase, p 97.7 0.00045 9.8E-09 70.1 13.3 36 79-115 320-355 (720)
167 KOG0384|consensus 97.7 0.00013 2.8E-09 75.2 8.6 155 58-286 351-523 (1373)
168 KOG0389|consensus 97.7 0.00022 4.8E-09 70.5 9.2 153 84-302 400-561 (941)
169 COG0653 SecA Preprotein transl 97.6 0.0002 4.2E-09 72.1 8.3 127 83-271 80-213 (822)
170 PF12340 DUF3638: Protein of u 97.6 0.0007 1.5E-08 58.6 10.6 63 62-127 4-69 (229)
171 KOG4439|consensus 97.6 0.00016 3.6E-09 70.6 7.1 141 83-273 325-478 (901)
172 KOG1802|consensus 97.6 0.00023 5E-09 69.2 8.0 77 75-169 402-478 (935)
173 PF13245 AAA_19: Part of AAA d 97.6 0.00029 6.3E-09 50.4 6.5 33 91-123 2-35 (76)
174 KOG1131|consensus 97.5 0.0009 2E-08 63.6 11.1 74 81-169 14-91 (755)
175 KOG0392|consensus 97.5 0.0012 2.5E-08 68.3 12.5 157 84-302 976-1137(1549)
176 KOG1002|consensus 97.4 0.00071 1.5E-08 63.9 9.1 128 83-273 184-331 (791)
177 PRK13889 conjugal transfer rel 97.4 0.0008 1.7E-08 70.0 10.2 32 83-114 346-378 (988)
178 KOG1000|consensus 97.4 0.0023 5E-08 60.6 12.1 157 68-303 191-348 (689)
179 PRK06526 transposase; Provisio 97.4 0.00045 9.7E-09 61.3 6.6 23 95-117 95-117 (254)
180 KOG0391|consensus 97.4 0.001 2.2E-08 68.4 9.8 152 84-302 616-774 (1958)
181 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0026 5.5E-08 65.0 12.7 32 83-114 352-384 (744)
182 PF13401 AAA_22: AAA domain; P 97.4 0.00049 1.1E-08 54.0 6.1 21 97-117 3-23 (131)
183 KOG0331|consensus 97.3 0.0012 2.6E-08 63.6 9.5 68 186-263 343-414 (519)
184 PF00580 UvrD-helicase: UvrD/R 97.3 0.00063 1.4E-08 61.6 7.3 71 84-171 1-71 (315)
185 PRK06893 DNA replication initi 97.3 0.00071 1.5E-08 59.1 7.0 46 256-304 89-135 (229)
186 PF05970 PIF1: PIF1-like helic 97.3 0.00063 1.4E-08 63.6 6.9 32 84-115 2-39 (364)
187 cd00009 AAA The AAA+ (ATPases 97.2 0.0049 1.1E-07 48.4 10.6 17 98-114 19-35 (151)
188 PRK12723 flagellar biosynthesi 97.2 0.0045 9.8E-08 58.2 11.7 57 241-304 241-298 (388)
189 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.0031 6.6E-08 54.5 9.7 46 58-116 9-56 (226)
190 PRK08727 hypothetical protein; 97.2 0.0022 4.7E-08 56.2 8.5 16 99-114 42-57 (233)
191 PRK05642 DNA replication initi 97.1 0.0014 3.1E-08 57.4 7.1 44 256-303 95-139 (234)
192 KOG4150|consensus 97.1 0.0011 2.3E-08 63.8 6.0 180 76-308 279-466 (1034)
193 COG0556 UvrB Helicase subunit 97.0 0.001 2.2E-08 63.5 5.5 33 83-115 12-49 (663)
194 PRK08181 transposase; Validate 97.0 0.0047 1E-07 55.2 9.5 20 96-115 104-123 (269)
195 PRK08084 DNA replication initi 97.0 0.0055 1.2E-07 53.7 9.8 44 258-304 97-141 (235)
196 PRK06835 DNA replication prote 97.0 0.0028 6.1E-08 58.3 7.9 27 97-124 182-208 (329)
197 KOG0989|consensus 97.0 0.0037 7.9E-08 56.1 8.2 50 60-122 32-81 (346)
198 COG1875 NYN ribonuclease and A 97.0 0.013 2.7E-07 53.9 11.8 49 79-127 224-274 (436)
199 PRK14964 DNA polymerase III su 97.0 0.013 2.9E-07 56.7 12.6 45 60-119 9-56 (491)
200 KOG1805|consensus 97.0 0.0053 1.1E-07 62.4 10.0 162 59-273 646-811 (1100)
201 PRK06921 hypothetical protein; 96.9 0.008 1.7E-07 53.7 9.5 27 97-124 116-142 (266)
202 cd01120 RecA-like_NTPases RecA 96.9 0.0067 1.5E-07 48.9 8.5 18 101-118 2-19 (165)
203 PRK13826 Dtr system oriT relax 96.8 0.014 3.1E-07 61.4 12.5 48 67-115 366-414 (1102)
204 PRK14722 flhF flagellar biosyn 96.8 0.011 2.5E-07 55.1 10.6 23 97-119 136-158 (374)
205 PRK08903 DnaA regulatory inact 96.8 0.02 4.4E-07 49.6 11.6 44 257-304 89-132 (227)
206 COG3421 Uncharacterized protei 96.8 0.003 6.6E-08 61.1 6.5 73 233-306 80-168 (812)
207 PRK04296 thymidine kinase; Pro 96.8 0.01 2.2E-07 50.2 9.2 40 240-286 63-102 (190)
208 PF00308 Bac_DnaA: Bacterial d 96.8 0.003 6.4E-08 54.8 5.9 49 256-307 95-144 (219)
209 PRK12377 putative replication 96.8 0.011 2.5E-07 52.1 9.7 26 98-124 101-126 (248)
210 PHA02533 17 large terminase pr 96.7 0.015 3.2E-07 57.1 11.1 42 83-124 59-100 (534)
211 PRK07003 DNA polymerase III su 96.7 0.016 3.6E-07 58.4 11.4 43 60-117 12-57 (830)
212 PRK07764 DNA polymerase III su 96.7 0.015 3.2E-07 59.9 10.9 48 60-122 11-61 (824)
213 PRK04195 replication factor C 96.7 0.019 4.1E-07 55.8 11.3 45 59-115 9-56 (482)
214 PRK10919 ATP-dependent DNA hel 96.6 0.0093 2E-07 60.3 9.1 39 83-123 2-40 (672)
215 PF00004 AAA: ATPase family as 96.6 0.0051 1.1E-07 48.0 5.8 15 101-115 1-15 (132)
216 PF01695 IstB_IS21: IstB-like 96.6 0.0046 1E-07 51.8 5.8 29 96-125 45-73 (178)
217 PRK07952 DNA replication prote 96.6 0.02 4.4E-07 50.4 10.0 42 256-300 160-202 (244)
218 PRK11331 5-methylcytosine-spec 96.6 0.0087 1.9E-07 57.0 8.1 33 84-116 180-212 (459)
219 smart00382 AAA ATPases associa 96.6 0.0035 7.6E-08 48.7 4.7 19 98-116 2-20 (148)
220 PRK14956 DNA polymerase III su 96.6 0.016 3.4E-07 55.8 9.8 44 60-118 14-60 (484)
221 PHA02544 44 clamp loader, smal 96.6 0.014 3.1E-07 53.2 9.3 42 59-115 16-60 (316)
222 PRK07994 DNA polymerase III su 96.5 0.047 1E-06 54.6 13.1 45 60-119 12-59 (647)
223 PRK09111 DNA polymerase III su 96.5 0.02 4.3E-07 57.0 10.5 46 59-119 19-67 (598)
224 PRK14950 DNA polymerase III su 96.5 0.04 8.8E-07 54.8 12.5 44 60-118 12-58 (585)
225 PLN03025 replication factor C 96.5 0.015 3.2E-07 53.3 8.7 46 59-117 8-53 (319)
226 PRK14955 DNA polymerase III su 96.4 0.045 9.7E-07 51.8 12.1 44 60-118 12-58 (397)
227 TIGR01075 uvrD DNA helicase II 96.4 0.014 3.1E-07 59.5 9.1 39 82-122 3-41 (715)
228 PRK12402 replication factor C 96.4 0.026 5.6E-07 51.8 10.1 44 59-117 10-55 (337)
229 PRK14958 DNA polymerase III su 96.4 0.03 6.6E-07 54.7 10.9 44 60-118 12-58 (509)
230 PRK14963 DNA polymerase III su 96.4 0.043 9.3E-07 53.5 11.8 46 60-117 10-55 (504)
231 PRK08116 hypothetical protein; 96.4 0.023 5.1E-07 50.8 9.2 26 99-125 115-140 (268)
232 PRK14961 DNA polymerase III su 96.4 0.04 8.7E-07 51.5 11.1 43 60-117 12-57 (363)
233 PRK05707 DNA polymerase III su 96.4 0.068 1.5E-06 49.3 12.3 34 84-117 4-41 (328)
234 PRK14969 DNA polymerase III su 96.3 0.032 7E-07 54.7 10.7 44 60-118 12-58 (527)
235 PRK12323 DNA polymerase III su 96.3 0.021 4.5E-07 56.8 9.3 44 60-118 12-58 (700)
236 PRK05563 DNA polymerase III su 96.3 0.04 8.6E-07 54.5 11.3 48 60-119 12-59 (559)
237 KOG0991|consensus 96.3 0.0076 1.6E-07 52.2 5.4 20 99-118 49-68 (333)
238 PRK14951 DNA polymerase III su 96.3 0.032 7E-07 55.6 10.6 44 60-118 12-58 (618)
239 PRK05703 flhF flagellar biosyn 96.3 0.073 1.6E-06 50.8 12.6 20 98-117 221-240 (424)
240 PRK14954 DNA polymerase III su 96.3 0.054 1.2E-06 54.1 12.0 45 60-119 12-59 (620)
241 PF03354 Terminase_1: Phage Te 96.3 0.024 5.2E-07 55.0 9.4 39 86-124 1-48 (477)
242 PRK06995 flhF flagellar biosyn 96.3 0.027 5.7E-07 54.4 9.4 22 98-119 256-277 (484)
243 TIGR00631 uvrb excinuclease AB 96.3 0.026 5.5E-07 56.8 9.6 65 83-169 9-78 (655)
244 PRK12422 chromosomal replicati 96.2 0.015 3.3E-07 55.8 7.6 47 257-306 201-248 (445)
245 KOG0742|consensus 96.2 0.0083 1.8E-07 55.9 5.4 47 62-115 353-401 (630)
246 TIGR01074 rep ATP-dependent DN 96.2 0.027 5.8E-07 57.0 9.7 38 84-123 2-39 (664)
247 PRK14959 DNA polymerase III su 96.2 0.073 1.6E-06 53.0 12.3 45 60-119 12-59 (624)
248 PRK08691 DNA polymerase III su 96.2 0.046 9.9E-07 54.9 10.9 44 60-118 12-58 (709)
249 PRK14087 dnaA chromosomal repl 96.2 0.022 4.8E-07 54.8 8.5 47 256-305 204-251 (450)
250 TIGR02785 addA_Gpos recombinat 96.1 0.024 5.2E-07 61.2 9.4 67 84-168 2-68 (1232)
251 PRK00149 dnaA chromosomal repl 96.1 0.019 4.1E-07 55.3 7.9 17 99-115 149-165 (450)
252 PRK06645 DNA polymerase III su 96.1 0.066 1.4E-06 52.2 11.5 45 59-118 16-63 (507)
253 PRK11889 flhF flagellar biosyn 96.1 0.055 1.2E-06 50.9 10.3 21 99-119 242-262 (436)
254 PF05621 TniB: Bacterial TniB 96.1 0.032 6.9E-07 50.3 8.3 24 99-127 62-85 (302)
255 PRK00411 cdc6 cell division co 96.1 0.045 9.8E-07 51.5 9.8 17 99-115 56-72 (394)
256 cd01122 GP4d_helicase GP4d_hel 96.0 0.018 3.9E-07 51.3 6.7 52 71-122 3-54 (271)
257 PRK14949 DNA polymerase III su 96.0 0.069 1.5E-06 55.0 11.5 44 60-118 12-58 (944)
258 PRK11773 uvrD DNA-dependent he 96.0 0.021 4.6E-07 58.3 8.0 39 83-123 9-47 (721)
259 PRK14962 DNA polymerase III su 96.0 0.077 1.7E-06 51.4 11.3 43 60-117 10-55 (472)
260 PRK14086 dnaA chromosomal repl 96.0 0.015 3.2E-07 57.5 6.5 48 256-306 375-423 (617)
261 PTZ00112 origin recognition co 96.0 0.11 2.4E-06 53.5 12.5 29 257-286 868-896 (1164)
262 PRK14965 DNA polymerase III su 96.0 0.081 1.7E-06 52.6 11.7 43 60-117 12-57 (576)
263 TIGR02928 orc1/cdc6 family rep 96.0 0.029 6.3E-07 52.2 8.0 17 99-115 41-57 (365)
264 TIGR01547 phage_term_2 phage t 96.0 0.054 1.2E-06 51.2 9.9 27 100-126 3-29 (396)
265 KOG0388|consensus 95.9 0.059 1.3E-06 53.5 10.0 147 86-302 570-732 (1185)
266 cd01124 KaiC KaiC is a circadi 95.9 0.069 1.5E-06 44.4 9.5 30 257-286 94-126 (187)
267 PRK14960 DNA polymerase III su 95.9 0.056 1.2E-06 53.9 10.0 44 60-118 11-57 (702)
268 TIGR00362 DnaA chromosomal rep 95.9 0.031 6.7E-07 53.0 8.1 25 99-124 137-161 (405)
269 COG1484 DnaC DNA replication p 95.9 0.025 5.3E-07 50.2 6.9 19 97-115 104-122 (254)
270 PF06733 DEAD_2: DEAD_2; Inte 95.9 0.0055 1.2E-07 51.0 2.5 53 221-273 106-160 (174)
271 PRK14974 cell division protein 95.9 0.089 1.9E-06 48.6 10.6 17 100-116 142-158 (336)
272 TIGR01073 pcrA ATP-dependent D 95.9 0.03 6.5E-07 57.2 8.2 40 82-123 3-42 (726)
273 PRK14088 dnaA chromosomal repl 95.8 0.026 5.7E-07 54.2 7.3 44 258-304 194-238 (440)
274 TIGR03499 FlhF flagellar biosy 95.8 0.07 1.5E-06 48.1 9.6 19 98-116 194-212 (282)
275 TIGR02881 spore_V_K stage V sp 95.8 0.079 1.7E-06 47.1 9.8 18 99-116 43-60 (261)
276 PRK14957 DNA polymerase III su 95.7 0.1 2.2E-06 51.4 10.9 45 60-119 12-59 (546)
277 PRK09183 transposase/IS protei 95.7 0.084 1.8E-06 47.0 9.5 22 95-116 99-120 (259)
278 PF05127 Helicase_RecD: Helica 95.7 0.0031 6.7E-08 52.6 0.3 97 185-303 27-123 (177)
279 PRK05896 DNA polymerase III su 95.7 0.16 3.5E-06 50.4 12.1 44 60-118 12-58 (605)
280 TIGR00580 mfd transcription-re 95.7 0.23 4.9E-06 52.1 13.8 92 185-288 661-756 (926)
281 COG1474 CDC6 Cdc6-related prot 95.7 0.13 2.8E-06 48.2 10.9 29 257-286 122-150 (366)
282 PRK14712 conjugal transfer nic 95.7 0.057 1.2E-06 59.0 9.6 33 83-115 835-869 (1623)
283 KOG0921|consensus 95.6 0.046 9.9E-07 55.5 8.0 153 89-305 384-537 (1282)
284 PRK14952 DNA polymerase III su 95.6 0.1 2.2E-06 51.8 10.5 45 60-119 9-56 (584)
285 COG0553 HepA Superfamily II DN 95.6 0.047 1E-06 56.6 8.5 137 81-273 336-487 (866)
286 COG1444 Predicted P-loop ATPas 95.5 0.2 4.4E-06 50.6 12.1 150 74-303 205-356 (758)
287 PRK06305 DNA polymerase III su 95.5 0.35 7.6E-06 46.6 13.5 44 60-118 13-59 (451)
288 PRK07940 DNA polymerase III su 95.5 0.1 2.2E-06 49.3 9.6 44 257-306 116-159 (394)
289 PRK13709 conjugal transfer nic 95.4 0.11 2.5E-06 57.3 11.0 34 82-115 966-1001(1747)
290 TIGR02760 TraI_TIGR conjugativ 95.4 0.11 2.5E-06 58.4 11.0 32 83-114 429-462 (1960)
291 PRK06647 DNA polymerase III su 95.4 0.4 8.6E-06 47.5 13.7 44 60-118 12-58 (563)
292 KOG0741|consensus 95.4 0.21 4.5E-06 48.3 11.1 46 257-302 597-648 (744)
293 COG0593 DnaA ATPase involved i 95.4 0.086 1.9E-06 49.7 8.6 47 258-307 175-222 (408)
294 PRK14971 DNA polymerase III su 95.4 0.24 5.3E-06 49.5 12.3 43 60-117 13-58 (614)
295 PF05496 RuvB_N: Holliday junc 95.4 0.14 3E-06 44.4 9.1 44 60-115 20-67 (233)
296 PRK13894 conjugal transfer ATP 95.4 0.047 1E-06 50.1 6.7 47 74-123 125-172 (319)
297 PRK14948 DNA polymerase III su 95.3 0.21 4.5E-06 50.0 11.8 49 59-119 11-59 (620)
298 KOG0953|consensus 95.3 0.032 6.9E-07 53.8 5.6 77 185-275 216-292 (700)
299 PRK14953 DNA polymerase III su 95.3 0.22 4.8E-06 48.4 11.5 45 60-119 12-59 (486)
300 PRK11054 helD DNA helicase IV; 95.2 0.087 1.9E-06 53.4 8.7 93 82-205 195-287 (684)
301 KOG0344|consensus 95.2 0.78 1.7E-05 44.7 14.5 102 185-300 388-493 (593)
302 PRK00440 rfc replication facto 95.2 0.18 3.9E-06 45.8 10.1 43 59-116 12-56 (319)
303 PTZ00454 26S protease regulato 95.2 0.096 2.1E-06 49.6 8.4 52 61-115 142-196 (398)
304 COG1419 FlhF Flagellar GTP-bin 95.1 0.061 1.3E-06 50.4 6.8 44 201-244 249-292 (407)
305 PRK14723 flhF flagellar biosyn 95.1 0.11 2.3E-06 52.9 8.9 22 98-119 185-206 (767)
306 PF13173 AAA_14: AAA domain 95.1 0.24 5.2E-06 38.8 9.3 36 258-300 61-96 (128)
307 PRK05298 excinuclease ABC subu 95.1 0.13 2.8E-06 51.9 9.5 65 83-169 12-81 (652)
308 PRK07471 DNA polymerase III su 95.1 0.57 1.2E-05 43.9 13.1 46 58-118 13-61 (365)
309 PRK08939 primosomal protein Dn 95.0 0.093 2E-06 47.9 7.6 26 98-124 156-181 (306)
310 PRK07993 DNA polymerase III su 95.0 0.31 6.8E-06 45.0 11.1 36 84-119 3-45 (334)
311 PF03969 AFG1_ATPase: AFG1-lik 95.0 0.34 7.4E-06 45.2 11.4 47 257-307 126-172 (362)
312 COG0470 HolB ATPase involved i 94.9 0.27 5.9E-06 44.6 10.6 22 98-119 23-45 (325)
313 TIGR02760 TraI_TIGR conjugativ 94.9 0.14 3.1E-06 57.6 10.1 34 82-115 1018-1053(1960)
314 PRK06964 DNA polymerase III su 94.9 0.52 1.1E-05 43.7 12.3 35 85-119 3-42 (342)
315 PHA03333 putative ATPase subun 94.9 0.99 2.2E-05 45.3 14.6 37 85-121 171-210 (752)
316 PF13177 DNA_pol3_delta2: DNA 94.9 0.28 6.2E-06 40.2 9.5 20 99-118 20-39 (162)
317 PF00448 SRP54: SRP54-type pro 94.8 0.15 3.2E-06 43.4 7.9 17 100-116 3-19 (196)
318 PRK12727 flagellar biosynthesi 94.8 0.19 4.2E-06 49.0 9.4 20 97-116 349-368 (559)
319 PRK13833 conjugal transfer pro 94.8 0.09 2E-06 48.2 6.9 45 76-123 123-168 (323)
320 PRK07133 DNA polymerase III su 94.7 0.29 6.2E-06 49.6 10.6 44 60-118 14-60 (725)
321 PRK08699 DNA polymerase III su 94.7 0.41 9E-06 44.0 10.9 35 85-119 3-42 (325)
322 TIGR02688 conserved hypothetic 94.6 0.29 6.3E-06 46.4 9.9 48 69-116 173-227 (449)
323 TIGR02397 dnaX_nterm DNA polym 94.6 0.39 8.4E-06 44.4 10.8 42 60-116 10-54 (355)
324 COG2805 PilT Tfp pilus assembl 94.6 0.066 1.4E-06 48.1 5.2 50 59-127 104-153 (353)
325 PRK09112 DNA polymerase III su 94.6 0.59 1.3E-05 43.5 11.8 51 58-124 17-70 (351)
326 PRK08451 DNA polymerase III su 94.6 0.44 9.5E-06 46.8 11.3 43 60-117 10-55 (535)
327 KOG0298|consensus 94.6 0.14 3E-06 53.9 8.1 109 98-249 374-483 (1394)
328 PRK06871 DNA polymerase III su 94.5 0.89 1.9E-05 41.8 12.6 35 85-119 4-45 (325)
329 CHL00181 cbbX CbbX; Provisiona 94.5 0.31 6.8E-06 44.0 9.5 20 98-117 59-78 (287)
330 KOG0386|consensus 94.5 0.07 1.5E-06 54.7 5.7 128 83-273 394-530 (1157)
331 PRK11823 DNA repair protein Ra 94.4 0.22 4.8E-06 47.9 8.9 21 98-118 80-100 (446)
332 TIGR02525 plasmid_TraJ plasmid 94.3 0.082 1.8E-06 49.5 5.5 47 60-125 129-175 (372)
333 COG1435 Tdk Thymidine kinase [ 94.3 0.42 9E-06 40.4 9.1 49 236-286 61-109 (201)
334 PRK06090 DNA polymerase III su 94.3 0.43 9.3E-06 43.8 10.1 36 83-118 3-45 (319)
335 PRK08533 flagellar accessory p 94.3 0.42 9E-06 41.7 9.7 23 95-117 21-43 (230)
336 TIGR00678 holB DNA polymerase 94.2 1.7 3.6E-05 36.3 13.0 29 256-288 94-122 (188)
337 TIGR02782 TrbB_P P-type conjug 94.2 0.11 2.3E-06 47.3 6.0 47 74-123 109-156 (299)
338 TIGR00602 rad24 checkpoint pro 94.2 0.39 8.4E-06 48.2 10.4 51 59-117 79-129 (637)
339 TIGR01425 SRP54_euk signal rec 94.2 0.35 7.6E-06 46.1 9.6 16 100-115 102-117 (429)
340 TIGR01241 FtsH_fam ATP-depende 94.2 0.14 3.1E-06 49.9 7.3 52 61-115 52-105 (495)
341 PRK14721 flhF flagellar biosyn 94.2 0.11 2.3E-06 49.5 6.0 21 98-118 191-211 (420)
342 TIGR02524 dot_icm_DotB Dot/Icm 94.1 0.058 1.3E-06 50.3 4.2 48 58-124 112-159 (358)
343 PHA03368 DNA packaging termina 94.1 0.51 1.1E-05 47.1 10.7 136 97-305 253-392 (738)
344 KOG0338|consensus 94.1 0.21 4.4E-06 48.0 7.7 26 147-172 254-279 (691)
345 COG3973 Superfamily I DNA and 94.1 0.37 8.1E-06 47.3 9.5 61 65-125 186-253 (747)
346 cd01126 TraG_VirD4 The TraG/Tr 94.0 0.02 4.3E-07 53.9 0.9 48 100-168 1-48 (384)
347 PRK10689 transcription-repair 94.0 0.59 1.3E-05 50.2 11.8 92 185-288 810-905 (1147)
348 KOG0733|consensus 94.0 0.38 8.2E-06 47.4 9.2 54 59-115 505-562 (802)
349 cd00984 DnaB_C DnaB helicase C 93.9 0.082 1.8E-06 46.1 4.5 29 96-124 11-39 (242)
350 TIGR00596 rad1 DNA repair prot 93.9 0.094 2E-06 53.9 5.4 67 233-303 6-72 (814)
351 PRK13764 ATPase; Provisional 93.9 0.093 2E-06 52.1 5.2 46 60-124 237-282 (602)
352 KOG0732|consensus 93.9 0.22 4.9E-06 51.9 8.0 53 60-115 261-316 (1080)
353 PRK13900 type IV secretion sys 93.8 0.14 3.1E-06 47.2 6.1 29 94-123 156-184 (332)
354 PRK13342 recombination factor 93.8 0.33 7.1E-06 46.2 8.7 18 99-116 37-54 (413)
355 TIGR02868 CydC thiol reductant 93.8 0.074 1.6E-06 52.2 4.4 41 256-300 486-526 (529)
356 PRK12726 flagellar biosynthesi 93.7 0.33 7.1E-06 45.5 8.2 22 98-119 206-227 (407)
357 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.31 6.7E-06 42.6 7.7 26 98-123 21-46 (237)
358 COG4962 CpaF Flp pilus assembl 93.6 0.067 1.4E-06 49.0 3.4 36 79-114 153-189 (355)
359 PRK03992 proteasome-activating 93.6 0.24 5.2E-06 46.8 7.4 52 61-115 128-182 (389)
360 COG2804 PulE Type II secretory 93.6 0.14 3E-06 49.2 5.6 47 76-126 237-285 (500)
361 PF05707 Zot: Zonular occluden 93.6 0.23 5E-06 42.0 6.5 44 258-301 79-124 (193)
362 PRK10436 hypothetical protein; 93.6 0.11 2.3E-06 50.2 4.9 49 61-124 195-243 (462)
363 PRK06731 flhF flagellar biosyn 93.5 0.72 1.6E-05 41.3 9.8 23 97-119 74-96 (270)
364 PF02534 T4SS-DNA_transf: Type 93.5 0.045 9.7E-07 52.9 2.3 50 99-169 45-94 (469)
365 PRK14970 DNA polymerase III su 93.5 0.97 2.1E-05 42.2 11.1 42 60-116 13-57 (367)
366 COG4626 Phage terminase-like p 93.4 0.7 1.5E-05 45.0 10.1 147 83-301 61-223 (546)
367 PF06745 KaiC: KaiC; InterPro 93.4 0.1 2.2E-06 45.2 4.1 29 97-125 18-46 (226)
368 PRK12724 flagellar biosynthesi 93.3 0.91 2E-05 43.2 10.5 22 100-121 225-246 (432)
369 TIGR00763 lon ATP-dependent pr 93.3 0.5 1.1E-05 48.8 9.6 18 98-115 347-364 (775)
370 PF03237 Terminase_6: Terminas 93.3 0.67 1.5E-05 42.5 9.8 26 102-127 1-26 (384)
371 PF05876 Terminase_GpA: Phage 93.3 0.14 3.1E-06 50.6 5.4 35 83-117 16-52 (557)
372 PF10412 TrwB_AAD_bind: Type I 93.2 0.097 2.1E-06 49.4 4.0 52 93-163 10-61 (386)
373 KOG0339|consensus 93.2 0.61 1.3E-05 44.9 9.2 25 146-170 297-321 (731)
374 cd01121 Sms Sms (bacterial rad 93.2 0.57 1.2E-05 44.0 9.1 20 98-117 82-101 (372)
375 PRK07399 DNA polymerase III su 93.2 1.9 4E-05 39.5 12.2 55 239-300 106-160 (314)
376 TIGR00643 recG ATP-dependent D 93.0 6.2 0.00014 39.8 16.8 92 185-288 449-552 (630)
377 PHA00729 NTP-binding motif con 92.9 0.38 8.3E-06 41.8 6.9 16 100-115 19-34 (226)
378 PRK13341 recombination factor 92.9 0.6 1.3E-05 47.7 9.3 18 99-116 53-70 (725)
379 TIGR02538 type_IV_pilB type IV 92.9 0.16 3.6E-06 50.3 5.2 37 86-123 302-340 (564)
380 TIGR00064 ftsY signal recognit 92.8 0.88 1.9E-05 40.8 9.3 21 99-119 73-93 (272)
381 PF05729 NACHT: NACHT domain 92.8 0.52 1.1E-05 37.9 7.3 25 100-125 2-26 (166)
382 PRK00771 signal recognition pa 92.8 0.47 1E-05 45.4 7.9 19 99-117 96-114 (437)
383 PF01637 Arch_ATPase: Archaeal 92.7 0.95 2E-05 38.6 9.2 17 98-114 20-36 (234)
384 PRK05973 replicative DNA helic 92.7 0.55 1.2E-05 41.2 7.6 57 66-122 23-88 (237)
385 COG1132 MdlB ABC-type multidru 92.6 0.23 5.1E-06 49.2 6.0 41 256-300 481-521 (567)
386 TIGR03881 KaiC_arch_4 KaiC dom 92.6 0.74 1.6E-05 39.8 8.4 24 97-120 19-42 (229)
387 PRK08769 DNA polymerase III su 92.5 0.63 1.4E-05 42.7 8.1 38 81-118 2-46 (319)
388 PRK06067 flagellar accessory p 92.5 0.89 1.9E-05 39.5 8.8 24 98-121 25-48 (234)
389 TIGR00631 uvrb excinuclease AB 92.4 2.2 4.8E-05 43.1 12.5 95 184-288 442-540 (655)
390 PRK13897 type IV secretion sys 92.3 0.078 1.7E-06 52.8 2.1 49 99-168 159-207 (606)
391 COG5008 PilU Tfp pilus assembl 92.3 0.14 3E-06 45.4 3.3 38 59-115 106-144 (375)
392 CHL00176 ftsH cell division pr 92.2 0.41 8.9E-06 48.1 7.1 17 99-115 217-233 (638)
393 PRK11034 clpA ATP-dependent Cl 92.2 0.65 1.4E-05 47.6 8.6 18 98-115 207-224 (758)
394 cd01130 VirB11-like_ATPase Typ 92.2 0.19 4.1E-06 42.2 4.1 38 76-115 4-42 (186)
395 KOG0058|consensus 92.1 0.37 7.9E-06 48.2 6.4 31 256-286 620-650 (716)
396 COG2256 MGS1 ATPase related to 92.1 1.2 2.6E-05 41.8 9.4 19 99-117 49-67 (436)
397 PF12846 AAA_10: AAA-like doma 92.1 0.22 4.8E-06 44.5 4.7 42 99-159 2-43 (304)
398 KOG0333|consensus 91.9 0.71 1.5E-05 44.6 7.8 70 184-263 517-590 (673)
399 TIGR02237 recomb_radB DNA repa 91.9 0.51 1.1E-05 40.1 6.5 24 98-121 12-35 (209)
400 cd01129 PulE-GspE PulE/GspE Th 91.9 0.21 4.6E-06 44.5 4.2 35 88-123 68-104 (264)
401 COG1485 Predicted ATPase [Gene 91.8 2.3 5.1E-05 39.2 10.7 47 257-307 129-175 (367)
402 PRK13850 type IV secretion sys 91.8 0.098 2.1E-06 52.7 2.1 49 99-168 140-188 (670)
403 PRK10917 ATP-dependent DNA hel 91.8 7.4 0.00016 39.6 15.6 92 185-288 472-575 (681)
404 KOG0744|consensus 91.7 1.1 2.4E-05 40.9 8.5 16 98-113 177-192 (423)
405 TIGR01420 pilT_fam pilus retra 91.7 0.21 4.7E-06 46.3 4.1 25 98-123 122-146 (343)
406 TIGR01243 CDC48 AAA family ATP 91.6 0.82 1.8E-05 46.9 8.7 52 61-115 450-504 (733)
407 PRK13700 conjugal transfer pro 91.6 0.17 3.7E-06 50.9 3.6 74 69-163 156-231 (732)
408 KOG0731|consensus 91.6 2 4.4E-05 43.7 11.0 53 60-115 307-361 (774)
409 KOG0060|consensus 91.5 0.17 3.6E-06 49.4 3.3 46 241-287 572-617 (659)
410 KOG3089|consensus 91.5 0.075 1.6E-06 45.3 0.9 35 232-266 194-228 (271)
411 TIGR00959 ffh signal recogniti 91.5 0.87 1.9E-05 43.5 8.1 20 100-119 101-120 (428)
412 PRK13851 type IV secretion sys 91.4 0.22 4.7E-06 46.2 3.8 30 91-121 155-184 (344)
413 PRK10867 signal recognition pa 91.4 1.3 2.8E-05 42.5 9.1 19 100-118 102-120 (433)
414 PTZ00293 thymidine kinase; Pro 91.1 1.5 3.2E-05 37.7 8.3 20 98-117 4-23 (211)
415 TIGR02203 MsbA_lipidA lipid A 91.0 0.32 7E-06 48.1 4.9 42 256-301 485-526 (571)
416 COG1219 ClpX ATP-dependent pro 91.0 0.14 3E-06 46.5 2.0 29 97-127 96-124 (408)
417 TIGR02533 type_II_gspE general 90.9 0.33 7.1E-06 47.3 4.6 37 86-123 228-266 (486)
418 PRK10865 protein disaggregatio 90.8 0.33 7.1E-06 50.6 4.9 17 99-115 200-216 (857)
419 cd01127 TrwB Bacterial conjuga 90.8 0.23 4.9E-06 47.3 3.5 51 92-161 36-86 (410)
420 PRK10263 DNA translocase FtsK; 90.7 1.3 2.8E-05 47.5 9.0 28 99-126 1011-1038(1355)
421 PHA03372 DNA packaging termina 90.7 1.6 3.4E-05 43.3 9.0 130 99-303 203-337 (668)
422 COG2909 MalT ATP-dependent tra 90.7 0.57 1.2E-05 47.8 6.2 41 260-304 131-171 (894)
423 TIGR02640 gas_vesic_GvpN gas v 90.6 0.25 5.5E-06 43.9 3.4 28 89-116 12-39 (262)
424 PRK04537 ATP-dependent RNA hel 90.6 1.1 2.4E-05 44.6 8.2 72 185-266 258-333 (572)
425 PRK10416 signal recognition pa 90.6 2.4 5.2E-05 38.9 9.8 18 98-115 114-131 (318)
426 TIGR03600 phage_DnaB phage rep 90.6 0.99 2.1E-05 43.0 7.6 43 80-122 176-218 (421)
427 PRK05986 cob(I)alamin adenolsy 90.6 3.1 6.7E-05 35.2 9.6 28 96-123 20-47 (191)
428 KOG1001|consensus 90.6 0.59 1.3E-05 47.2 6.2 81 185-274 190-270 (674)
429 COG0630 VirB11 Type IV secreto 90.4 0.44 9.6E-06 43.6 4.8 42 81-123 125-167 (312)
430 PRK06620 hypothetical protein; 90.4 1.3 2.8E-05 38.1 7.5 109 185-306 15-126 (214)
431 COG3267 ExeA Type II secretory 90.3 2.4 5.2E-05 37.4 9.0 55 62-121 15-73 (269)
432 TIGR03346 chaperone_ClpB ATP-d 90.3 0.91 2E-05 47.4 7.6 18 99-116 195-212 (852)
433 cd03239 ABC_SMC_head The struc 90.2 0.33 7.2E-06 40.5 3.6 42 257-301 115-156 (178)
434 PRK09087 hypothetical protein; 90.2 1.1 2.5E-05 38.8 7.1 18 98-115 44-61 (226)
435 PRK08058 DNA polymerase III su 90.2 5.7 0.00012 36.5 12.0 41 256-302 108-148 (329)
436 TIGR02204 MsbA_rel ABC transpo 90.1 0.39 8.6E-06 47.6 4.6 42 256-301 492-533 (576)
437 TIGR00767 rho transcription te 90.0 1.7 3.6E-05 41.2 8.3 18 97-114 167-184 (415)
438 KOG1015|consensus 90.0 1.9 4.1E-05 44.7 9.1 18 98-115 696-713 (1567)
439 PRK13876 conjugal transfer cou 90.0 0.2 4.2E-06 50.5 2.4 24 99-122 145-168 (663)
440 PRK13822 conjugal transfer cou 89.9 0.17 3.6E-06 50.9 1.8 49 99-168 225-273 (641)
441 PTZ00110 helicase; Provisional 89.8 2.4 5.2E-05 41.9 9.8 71 184-264 377-451 (545)
442 TIGR03375 type_I_sec_LssB type 89.6 0.25 5.4E-06 50.3 2.8 41 256-300 617-657 (694)
443 PLN00020 ribulose bisphosphate 89.6 0.3 6.4E-06 45.6 2.9 17 99-115 149-165 (413)
444 COG2255 RuvB Holliday junction 89.5 2.5 5.4E-05 38.0 8.5 46 60-117 22-71 (332)
445 TIGR02784 addA_alphas double-s 89.5 1.9 4.2E-05 46.5 9.5 56 98-169 10-65 (1141)
446 PF13479 AAA_24: AAA domain 89.3 0.39 8.4E-06 41.3 3.4 36 236-271 46-81 (213)
447 PRK11174 cysteine/glutathione 89.3 0.23 5E-06 49.4 2.3 41 256-300 501-541 (588)
448 PRK04328 hypothetical protein; 89.3 2.3 5E-05 37.4 8.4 26 97-122 22-47 (249)
449 cd00561 CobA_CobO_BtuR ATP:cor 89.2 4.6 9.9E-05 33.1 9.4 46 256-305 93-140 (159)
450 TIGR03743 SXT_TraD conjugative 89.1 0.73 1.6E-05 46.4 5.6 52 98-168 176-229 (634)
451 PRK04837 ATP-dependent RNA hel 89.1 1.2 2.6E-05 42.4 7.0 70 185-264 256-329 (423)
452 PLN00206 DEAD-box ATP-dependen 89.0 3.2 6.8E-05 40.8 9.9 71 185-264 368-442 (518)
453 PRK13695 putative NTPase; Prov 88.9 2.9 6.2E-05 34.5 8.3 17 100-116 2-18 (174)
454 KOG0335|consensus 88.9 0.27 5.8E-06 47.1 2.2 33 146-178 153-185 (482)
455 PF12775 AAA_7: P-loop contain 88.8 0.28 6.1E-06 43.9 2.2 21 95-115 30-50 (272)
456 cd03115 SRP The signal recogni 88.8 6.6 0.00014 32.1 10.4 17 101-117 3-19 (173)
457 PF00437 T2SE: Type II/IV secr 88.6 0.48 1E-05 42.2 3.6 52 59-123 99-151 (270)
458 PRK11176 lipid transporter ATP 88.5 0.67 1.4E-05 46.1 4.9 41 257-301 497-537 (582)
459 PRK06904 replicative DNA helic 88.2 5.3 0.00012 38.8 10.7 43 258-300 334-381 (472)
460 KOG1806|consensus 88.2 1.5 3.2E-05 45.7 7.0 130 79-225 734-874 (1320)
461 PRK10789 putative multidrug tr 88.2 0.58 1.3E-05 46.5 4.3 31 256-286 467-497 (569)
462 TIGR03878 thermo_KaiC_2 KaiC d 88.2 2.6 5.6E-05 37.4 8.0 25 97-121 35-59 (259)
463 TIGR00665 DnaB replicative DNA 88.1 3.4 7.3E-05 39.5 9.3 24 97-120 194-217 (434)
464 PRK10590 ATP-dependent RNA hel 88.1 2.2 4.8E-05 41.1 8.1 69 185-263 246-318 (456)
465 PF13555 AAA_29: P-loop contai 88.1 0.44 9.5E-06 32.5 2.3 18 97-114 22-39 (62)
466 TIGR03819 heli_sec_ATPase heli 88.1 0.92 2E-05 42.0 5.2 41 73-115 154-195 (340)
467 TIGR03754 conj_TOL_TraD conjug 88.0 1.1 2.3E-05 45.0 5.9 27 98-124 180-206 (643)
468 PF01078 Mg_chelatase: Magnesi 87.9 0.52 1.1E-05 40.3 3.2 26 90-115 13-39 (206)
469 PRK09376 rho transcription ter 87.8 3.6 7.8E-05 38.9 8.9 48 61-113 131-184 (416)
470 COG1074 RecB ATP-dependent exo 87.8 0.95 2.1E-05 48.8 5.8 58 97-168 15-72 (1139)
471 cd01394 radB RadB. The archaea 87.6 1.4 2.9E-05 37.8 5.7 24 98-121 19-42 (218)
472 TIGR00416 sms DNA repair prote 87.5 3.1 6.7E-05 40.2 8.6 20 98-117 94-113 (454)
473 PRK13657 cyclic beta-1,2-gluca 87.4 0.36 7.7E-06 48.1 2.2 42 256-301 487-528 (588)
474 TIGR00958 3a01208 Conjugate Tr 87.4 0.53 1.1E-05 48.1 3.5 26 256-281 633-658 (711)
475 PRK04841 transcriptional regul 87.3 1.5 3.3E-05 45.8 6.9 41 260-304 123-163 (903)
476 COG1119 ModF ABC-type molybden 87.3 2.8 6.1E-05 36.8 7.3 44 257-301 188-231 (257)
477 PRK11192 ATP-dependent RNA hel 87.2 2.1 4.7E-05 40.8 7.4 69 185-263 246-318 (434)
478 COG0513 SrmB Superfamily II DN 87.2 1.8 3.9E-05 42.5 6.9 68 186-263 275-346 (513)
479 TIGR03345 VI_ClpV1 type VI sec 87.1 1.4 2.9E-05 46.1 6.2 17 99-115 209-225 (852)
480 TIGR00614 recQ_fam ATP-depende 87.0 2.5 5.4E-05 40.9 7.8 71 185-265 227-301 (470)
481 TIGR01970 DEAH_box_HrpB ATP-de 86.9 4.2 9.1E-05 42.3 9.6 72 185-263 210-285 (819)
482 KOG2228|consensus 86.8 4.9 0.00011 37.0 8.8 43 244-286 123-165 (408)
483 TIGR02857 CydD thiol reductant 86.8 0.57 1.2E-05 46.0 3.2 42 256-301 474-515 (529)
484 PLN03232 ABC transporter C fam 86.8 0.63 1.4E-05 51.6 3.8 30 257-286 1388-1417(1495)
485 cd00079 HELICc Helicase superf 86.6 4.7 0.0001 30.7 7.9 74 185-268 29-106 (131)
486 COG2842 Uncharacterized ATPase 86.5 1.2 2.6E-05 40.0 4.7 48 237-285 143-191 (297)
487 COG0606 Predicted ATPase with 86.4 0.63 1.4E-05 44.5 3.1 27 89-115 188-215 (490)
488 PHA00012 I assembly protein 86.4 2.1 4.5E-05 39.3 6.3 24 101-124 4-27 (361)
489 COG0467 RAD55 RecA-superfamily 86.3 1.1 2.3E-05 39.7 4.4 19 97-115 22-40 (260)
490 PRK11057 ATP-dependent DNA hel 86.2 7.6 0.00016 39.0 10.9 70 185-264 237-310 (607)
491 KOG2227|consensus 86.1 1.7 3.8E-05 41.5 5.8 17 99-115 176-192 (529)
492 TIGR03880 KaiC_arch_3 KaiC dom 86.0 4.8 0.0001 34.6 8.3 24 98-121 16-39 (224)
493 PRK13767 ATP-dependent helicas 85.8 4.7 0.0001 42.3 9.5 75 185-265 285-365 (876)
494 PRK10787 DNA-binding ATP-depen 85.7 3.6 7.8E-05 42.5 8.4 30 241-273 402-431 (784)
495 PRK11664 ATP-dependent RNA hel 85.6 5.8 0.00012 41.3 9.9 72 185-263 213-288 (812)
496 TIGR02759 TraD_Ftype type IV c 85.6 0.62 1.3E-05 46.2 2.8 55 69-126 146-203 (566)
497 PRK11160 cysteine/glutathione 85.6 0.51 1.1E-05 46.9 2.2 31 256-286 491-521 (574)
498 TIGR02788 VirB11 P-type DNA tr 85.6 1.2 2.5E-05 40.7 4.4 22 94-115 140-161 (308)
499 cd03289 ABCC_CFTR2 The CFTR su 85.5 1.8 3.9E-05 38.8 5.5 41 256-300 154-194 (275)
500 PTZ00243 ABC transporter; Prov 85.2 0.63 1.4E-05 51.7 2.9 28 259-286 1465-1492(1560)
No 1
>KOG0331|consensus
Probab=100.00 E-value=2.7e-47 Score=357.24 Aligned_cols=196 Identities=48% Similarity=0.808 Sum_probs=181.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
..|++++|++.+..+|+..||+.|||||++.||.+++|+|+++.|.||||||++|++|++.++.+...
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 37999999999999999999999999999999999999999999999999999999999999986321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.......|.+|||+||||||.|+.+++..++....++++|+||
T Consensus 159 -------------------------------------~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyG 201 (519)
T KOG0331|consen 159 -------------------------------------KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYG 201 (519)
T ss_pred -------------------------------------cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeC
Confidence 1123334999999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....|.+.+.++++|+|||||||.++++.+.++++++.|||+||||+|+|+||+++++.|+.+++. ..+|++|||
T Consensus 202 G~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~---~~rQtlm~s 278 (519)
T KOG0331|consen 202 GAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR---PDRQTLMFS 278 (519)
T ss_pred CCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC---CcccEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999842 356999999
Q ss_pred ecCCCCCC
Q psy12758 301 ATFPKEIQ 308 (308)
Q Consensus 301 ATl~~~v~ 308 (308)
||||.+|+
T Consensus 279 aTwp~~v~ 286 (519)
T KOG0331|consen 279 ATWPKEVR 286 (519)
T ss_pred eeccHHHH
Confidence 99998763
No 2
>KOG0330|consensus
Probab=100.00 E-value=3.9e-47 Score=337.82 Aligned_cols=192 Identities=42% Similarity=0.621 Sum_probs=182.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCC
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~ 137 (308)
....+|.+|++++.+++++.+.||..||+||+++||.++.|+|+|+.|+||||||.+|++|+++.++.++.
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------- 128 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------- 128 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC---------
Confidence 34579999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEE
Q psy12758 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 217 (308)
Q Consensus 138 ~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~ 217 (308)
.++++|++||||||.||.+.+..++...++++++
T Consensus 129 ----------------------------------------------~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~ 162 (476)
T KOG0330|consen 129 ----------------------------------------------LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAV 162 (476)
T ss_pred ----------------------------------------------CceEEEecCcHHHHHHHHHHHHHhccccCeEEEE
Confidence 1789999999999999999999999999999999
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
+.||.+...+...+.+.+||||+|||+|.+++.+ +.++++.++|||+||||+++|+.|.+.+..|+..+ +.++|+
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i----p~erqt 238 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVI----PRERQT 238 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc----CccceE
Confidence 9999999999999999999999999999999985 66899999999999999999999999999999998 678999
Q ss_pred EEEeecCCCCCC
Q psy12758 297 LMFSATFPKEIQ 308 (308)
Q Consensus 297 i~~SATl~~~v~ 308 (308)
++||||+|+.|+
T Consensus 239 ~LfsATMt~kv~ 250 (476)
T KOG0330|consen 239 FLFSATMTKKVR 250 (476)
T ss_pred EEEEeecchhhH
Confidence 999999998764
No 3
>KOG0338|consensus
Probab=100.00 E-value=1.7e-46 Score=343.20 Aligned_cols=191 Identities=39% Similarity=0.596 Sum_probs=180.2
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|.+|+|+..|++++..+||..|||||..+||..+-|+|++.||.||||||.||.+|+|.+++..+...
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~---------- 250 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV---------- 250 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC----------
Confidence 4899999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
...++|||+|||||+.|++...++++.+..+.+++++|
T Consensus 251 ------------------------------------------~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vG 288 (691)
T KOG0338|consen 251 ------------------------------------------AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVG 288 (691)
T ss_pred ------------------------------------------cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeec
Confidence 11679999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.+...|...|...+||+|+|||||.+++.+ ..++++++.+||+||||+||+.||.++|..|+..+ +.+||+++|
T Consensus 289 GL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lc----pk~RQTmLF 364 (691)
T KOG0338|consen 289 GLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC----PKNRQTMLF 364 (691)
T ss_pred CccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhc----cccccceee
Confidence 9999999999999999999999999999987 45899999999999999999999999999999987 779999999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||++++|
T Consensus 365 SATMteeV 372 (691)
T KOG0338|consen 365 SATMTEEV 372 (691)
T ss_pred hhhhHHHH
Confidence 99999876
No 4
>KOG0335|consensus
Probab=100.00 E-value=3e-45 Score=338.39 Aligned_cols=203 Identities=63% Similarity=1.071 Sum_probs=189.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|++-.+++.+..++.+.||..|||||+.+||.+..|+|+++||+||||||.|||+|++..++..........+
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~----- 148 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESG----- 148 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccC-----
Confidence 489999999999999999999999999999999999999999999999999999999999999988653222211
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
...+|.++|++|||||+.|++++++++....+++++.+||
T Consensus 149 ----------------------------------------~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~yg 188 (482)
T KOG0335|consen 149 ----------------------------------------GGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYG 188 (482)
T ss_pred ----------------------------------------CCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeC
Confidence 1134899999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.+...+.+.+.++|||+|+|||||.++++.+.+.+.++++|||||||+|+| ++|+++|+.|+.+..++....+|++||
T Consensus 189 g~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mF 268 (482)
T KOG0335|consen 189 GTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLF 268 (482)
T ss_pred CcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEE
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999998889999999
Q ss_pred eecCCCCCC
Q psy12758 300 SATFPKEIQ 308 (308)
Q Consensus 300 SATl~~~v~ 308 (308)
|||+|.++|
T Consensus 269 SAtfp~~iq 277 (482)
T KOG0335|consen 269 SATFPKEIQ 277 (482)
T ss_pred eccCChhhh
Confidence 999999886
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-44 Score=347.04 Aligned_cols=191 Identities=48% Similarity=0.801 Sum_probs=176.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
+.+|++|++++.++++|.++||..|||||.++||.++.|+|++++|+||||||+||++|+++.+.....
T Consensus 28 ~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~----------- 96 (513)
T COG0513 28 PPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----------- 96 (513)
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc-----------
Confidence 367999999999999999999999999999999999999999999999999999999999999653210
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEE
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 218 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~ 218 (308)
. ....+||++||||||.|+++++..+++.. +++++++
T Consensus 97 -----------------------------------------~-~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i 134 (513)
T COG0513 97 -----------------------------------------R-KYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVV 134 (513)
T ss_pred -----------------------------------------c-CCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEE
Confidence 0 00118999999999999999999999999 8999999
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
+||.+...+...+..++||+|||||||++++.++.++++.+++||+||||+|+++||.++++.|+..+ +.++|+++
T Consensus 135 ~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~----p~~~qtll 210 (513)
T COG0513 135 YGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL----PPDRQTLL 210 (513)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC----CcccEEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999999998 45899999
Q ss_pred EeecCCCCC
Q psy12758 299 FSATFPKEI 307 (308)
Q Consensus 299 ~SATl~~~v 307 (308)
||||+|+.|
T Consensus 211 fSAT~~~~i 219 (513)
T COG0513 211 FSATMPDDI 219 (513)
T ss_pred EecCCCHHH
Confidence 999999864
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5e-42 Score=333.99 Aligned_cols=193 Identities=48% Similarity=0.747 Sum_probs=177.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||++||++|.++||.+++|+|+|++||||||||++|++|++..+......
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~----------- 198 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL----------- 198 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-----------
Confidence 689999999999999999999999999999999999999999999999999999999999887654210
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
....+|.+|||+||||||.|+.++++.++...++++.+++|
T Consensus 199 ---------------------------------------~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~g 239 (545)
T PTZ00110 199 ---------------------------------------RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYG 239 (545)
T ss_pred ---------------------------------------cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeC
Confidence 01123789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+...+..+++|+|+||++|.+++.++...++++++|||||||+|++++|..+++.|+..+ ..++|+++||
T Consensus 240 g~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~----~~~~q~l~~S 315 (545)
T PTZ00110 240 GVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTLMWS 315 (545)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC----CCCCeEEEEE
Confidence 999999999999999999999999999999988899999999999999999999999999999987 4689999999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||+|+++
T Consensus 316 AT~p~~v 322 (545)
T PTZ00110 316 ATWPKEV 322 (545)
T ss_pred eCCCHHH
Confidence 9999865
No 7
>KOG0342|consensus
Probab=100.00 E-value=2.1e-42 Score=315.56 Aligned_cols=193 Identities=39% Similarity=0.626 Sum_probs=178.2
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
..|+++.|++..+++++++||.++|++|+.+||.++.|+|+++.|.||||||+|||+|+++++.+......
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--------- 152 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--------- 152 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC---------
Confidence 46899999999999999999999999999999999999999999999999999999999999988765322
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
....++|+|||||||.|++.+++.+.++. ++.+..+.
T Consensus 153 ------------------------------------------~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~vi 190 (543)
T KOG0342|consen 153 ------------------------------------------NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVI 190 (543)
T ss_pred ------------------------------------------CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEe
Confidence 22558999999999999999999999988 89999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCC-cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGK-IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~-~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
||.+.....+.+.++|+|+|+|||||++++++.. +.++++++||+||||+++|+||+++|+.|+..+ +..+|+++
T Consensus 191 GG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~l----pk~rqt~L 266 (543)
T KOG0342|consen 191 GGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKIL----PKQRQTLL 266 (543)
T ss_pred CCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhc----cccceeeE
Confidence 9999999999998899999999999999999865 557888999999999999999999999999998 57899999
Q ss_pred EeecCCCCCC
Q psy12758 299 FSATFPKEIQ 308 (308)
Q Consensus 299 ~SATl~~~v~ 308 (308)
||||.|++|+
T Consensus 267 FSAT~~~kV~ 276 (543)
T KOG0342|consen 267 FSATQPSKVK 276 (543)
T ss_pred eeCCCcHHHH
Confidence 9999998874
No 8
>KOG0339|consensus
Probab=100.00 E-value=4.9e-42 Score=313.76 Aligned_cols=196 Identities=48% Similarity=0.804 Sum_probs=183.6
Q ss_pred CCC-CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 58 PLP-PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 58 ~~~-~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
|.| .+|+.+|++..|+.++++..|.+||++|.+++|..++|+|++..|.||||||.||+.|++.+++.++.-
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL------- 291 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL------- 291 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh-------
Confidence 445 589999999999999999999999999999999999999999999999999999999999999877531
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
....+|..+|++||||||.|++.++++|++..+++++
T Consensus 292 -------------------------------------------~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v 328 (731)
T KOG0339|consen 292 -------------------------------------------KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVV 328 (731)
T ss_pred -------------------------------------------cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEE
Confidence 1223499999999999999999999999999999999
Q ss_pred EEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 217 VVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
++|||.+..+|...|..+|.|+|||||||.+++..+..++.++.||||||||+|+++||+.+++.|..++ .++||+
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi----rpdrQt 404 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI----RPDRQT 404 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhc----CCcceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 679999
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
|+|||||+..|
T Consensus 405 llFsaTf~~kI 415 (731)
T KOG0339|consen 405 LLFSATFKKKI 415 (731)
T ss_pred EEeeccchHHH
Confidence 99999998754
No 9
>KOG0345|consensus
Probab=100.00 E-value=3.3e-41 Score=306.16 Aligned_cols=194 Identities=38% Similarity=0.632 Sum_probs=172.5
Q ss_pred CCCccCCCCC--HHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMT--EIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137 (308)
Q Consensus 60 ~~~f~~l~l~--~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~ 137 (308)
+.+|++++.+ ++++++|..+||..+||+|..+||.++.++|+++.|+||||||+||++|++..+.......++.
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~---- 78 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG---- 78 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc----
Confidence 3578888755 9999999999999999999999999999999999999999999999999999997664322111
Q ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhc-CCCceE
Q psy12758 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYR-SQLRPC 216 (308)
Q Consensus 138 ~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~-~~~~~~ 216 (308)
..-+||++||||||.||.+++..+... .++++.
T Consensus 79 ----------------------------------------------~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~ 112 (567)
T KOG0345|consen 79 ----------------------------------------------QVGALIISPTRELARQIREVAQPFLEHLPNLNCE 112 (567)
T ss_pred ----------------------------------------------ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceE
Confidence 134899999999999999999998877 689999
Q ss_pred EEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCC--cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCC
Q psy12758 217 VVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGK--IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGD 293 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~--~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~ 293 (308)
+++||.+...+...+ .++++|+|||||||.+++.+.. ++++++.+||+||||+++|+||...++.|++.| |..
T Consensus 113 l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~L----PKQ 188 (567)
T KOG0345|consen 113 LLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFL----PKQ 188 (567)
T ss_pred EEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhc----ccc
Confidence 999999999888877 5689999999999999998854 556699999999999999999999999999998 778
Q ss_pred ceEEEEeecCCCCC
Q psy12758 294 RQTLMFSATFPKEI 307 (308)
Q Consensus 294 ~q~i~~SATl~~~v 307 (308)
|+|=+||||..++|
T Consensus 189 RRTGLFSATq~~~v 202 (567)
T KOG0345|consen 189 RRTGLFSATQTQEV 202 (567)
T ss_pred cccccccchhhHHH
Confidence 99999999998765
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-40 Score=312.47 Aligned_cols=197 Identities=35% Similarity=0.589 Sum_probs=177.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|++++|++.++++|.++||..||++|.++||.+++|+|++++||||||||++|++|+++.+.......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~---------- 77 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE---------- 77 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc----------
Confidence 5899999999999999999999999999999999999999999999999999999999999987653210
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
......+++||++||+|||.|+++.+..+....++++..++|
T Consensus 78 --------------------------------------~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g 119 (423)
T PRK04837 78 --------------------------------------DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYG 119 (423)
T ss_pred --------------------------------------ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEC
Confidence 001123789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+...+..++||+|+||++|.+++.++.+.++++++|||||||+|++++|..+++.++..++. ...+|+++||
T Consensus 120 g~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~--~~~~~~~l~S 197 (423)
T PRK04837 120 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP--ANQRLNMLFS 197 (423)
T ss_pred CCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCC--ccceeEEEEe
Confidence 99988888888889999999999999999999999999999999999999999999999999988642 3467899999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||++..+
T Consensus 198 AT~~~~~ 204 (423)
T PRK04837 198 ATLSYRV 204 (423)
T ss_pred ccCCHHH
Confidence 9998653
No 11
>KOG0348|consensus
Probab=100.00 E-value=3.1e-41 Score=310.20 Aligned_cols=198 Identities=37% Similarity=0.607 Sum_probs=175.8
Q ss_pred CCccCCCCCHHHHHHHH-HCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIA-LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~-~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
..|.+|||++.+.+.|. .+++..||.+|+++||.+++|+|++|.|+||||||+||++|+++.+........
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-------- 207 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-------- 207 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc--------
Confidence 47999999999999996 589999999999999999999999999999999999999999999987764322
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEE
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVV 218 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~ 218 (308)
...++.+||++||||||.|+|+.++++.+.. ++..+.+
T Consensus 208 -----------------------------------------Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~l 246 (708)
T KOG0348|consen 208 -----------------------------------------RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVL 246 (708)
T ss_pred -----------------------------------------ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeecee
Confidence 2234889999999999999999999998765 6788889
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcC-CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCC---C----
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERG-KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMP---R---- 290 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~---~---- 290 (308)
.||.........|.+|++|||+|||||.++|.+. .+.++.+++||+||||++++.||+.+|..|++.+... .
T Consensus 247 mGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~ 326 (708)
T KOG0348|consen 247 MGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDP 326 (708)
T ss_pred ecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccc
Confidence 9999999999999999999999999999999884 5889999999999999999999999999999877221 1
Q ss_pred --CCCceEEEEeecCCCCC
Q psy12758 291 --TGDRQTLMFSATFPKEI 307 (308)
Q Consensus 291 --~~~~q~i~~SATl~~~v 307 (308)
+..+|.+++|||+++.|
T Consensus 327 ~lp~q~q~mLlSATLtd~V 345 (708)
T KOG0348|consen 327 KLPHQLQNMLLSATLTDGV 345 (708)
T ss_pred cccHHHHhHhhhhhhHHHH
Confidence 22479999999998866
No 12
>KOG0336|consensus
Probab=100.00 E-value=2.2e-41 Score=302.83 Aligned_cols=198 Identities=47% Similarity=0.723 Sum_probs=176.3
Q ss_pred CCCC-CCccC-CCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q psy12758 57 LPLP-PQFDD-IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPA 134 (308)
Q Consensus 57 ~~~~-~~f~~-l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~ 134 (308)
+|.| -+|++ +...+++++.+++.||.+|||||.+|||++++|+|++..|+||+|||++||+|.+-++...+..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~----- 288 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR----- 288 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh-----
Confidence 4444 37887 6889999999999999999999999999999999999999999999999999988766544320
Q ss_pred CCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCc
Q psy12758 135 GRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLR 214 (308)
Q Consensus 135 ~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~ 214 (308)
.....+|.+|+++|||||+.|+.-++.++. +.+++
T Consensus 289 --------------------------------------------~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~k 323 (629)
T KOG0336|consen 289 --------------------------------------------REQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLK 323 (629)
T ss_pred --------------------------------------------hhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcc
Confidence 012334889999999999999998887765 45789
Q ss_pred eEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCc
Q psy12758 215 PCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDR 294 (308)
Q Consensus 215 ~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~ 294 (308)
..|+|||.+...+...+..+.+|+|+||++|.++...+.+++..+.|||+||||+||||||+++|+.|+-.+ .++|
T Consensus 324 svc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi----RPDR 399 (629)
T KOG0336|consen 324 SVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDI----RPDR 399 (629)
T ss_pred eEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhc----CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 5799
Q ss_pred eEEEEeecCCCCCC
Q psy12758 295 QTLMFSATFPKEIQ 308 (308)
Q Consensus 295 q~i~~SATl~~~v~ 308 (308)
|++|.|||||+.|+
T Consensus 400 qtvmTSATWP~~Vr 413 (629)
T KOG0336|consen 400 QTVMTSATWPEGVR 413 (629)
T ss_pred eeeeecccCchHHH
Confidence 99999999998763
No 13
>KOG0341|consensus
Probab=100.00 E-value=6.4e-42 Score=304.47 Aligned_cols=197 Identities=42% Similarity=0.697 Sum_probs=178.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|.++.+|..+++.|++.|+.+|||||.+.+|.+++|+|.|..|-||||||+.|.+|++...++..-..+-.
T Consensus 170 ksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~------- 242 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA------- 242 (610)
T ss_pred hhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc-------
Confidence 6999999999999999999999999999999999999999999999999999999999999887764321111
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC------CCc
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS------QLR 214 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~------~~~ 214 (308)
...+|..||+||+||||.|.++.+..++... .++
T Consensus 243 ----------------------------------------~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lR 282 (610)
T KOG0341|consen 243 ----------------------------------------RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELR 282 (610)
T ss_pred ----------------------------------------cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 2234888999999999999888888777543 578
Q ss_pred eEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCc
Q psy12758 215 PCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDR 294 (308)
Q Consensus 215 ~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~ 294 (308)
.+++.||.+...+......|.||+|+|||||.++|..+.++|+-++||++||||+|+|+||+++++.|+.++ ...|
T Consensus 283 s~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F----K~QR 358 (610)
T KOG0341|consen 283 SLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF----KGQR 358 (610)
T ss_pred hhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH----hhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998 6789
Q ss_pred eEEEEeecCCCCCC
Q psy12758 295 QTLMFSATFPKEIQ 308 (308)
Q Consensus 295 q~i~~SATl~~~v~ 308 (308)
|+++||||+|..||
T Consensus 359 QTLLFSATMP~KIQ 372 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQ 372 (610)
T ss_pred heeeeeccccHHHH
Confidence 99999999998876
No 14
>KOG0343|consensus
Probab=100.00 E-value=7.2e-41 Score=308.75 Aligned_cols=194 Identities=37% Similarity=0.609 Sum_probs=176.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCC
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~ 137 (308)
..+..|++|+|+...+++|+..+|..||.||+.+||..+.|+|++..|.||||||+||++|+|+.++...+.....
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DG---- 141 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDG---- 141 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCC----
Confidence 3456899999999999999999999999999999999999999999999999999999999999999887632222
Q ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEE
Q psy12758 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 217 (308)
Q Consensus 138 ~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~ 217 (308)
--+||+.||||||.|++..+.+.+++..+.+.+
T Consensus 142 -----------------------------------------------lGalIISPTRELA~QtFevL~kvgk~h~fSaGL 174 (758)
T KOG0343|consen 142 -----------------------------------------------LGALIISPTRELALQTFEVLNKVGKHHDFSAGL 174 (758)
T ss_pred -----------------------------------------------ceeEEecchHHHHHHHHHHHHHHhhccccccce
Confidence 338999999999999999999999999999999
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcC-CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERG-KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
+.||.+.......+. +++|||||||||+.++... .++..++.+||+||||+|+||||...+..|++++ |..||+
T Consensus 175 iiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l----P~~RQT 249 (758)
T KOG0343|consen 175 IIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL----PKKRQT 249 (758)
T ss_pred eecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC----Chhhee
Confidence 999999877766654 5899999999999988654 5788999999999999999999999999999998 778999
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||-+..|
T Consensus 250 LLFSATqt~sv 260 (758)
T KOG0343|consen 250 LLFSATQTKSV 260 (758)
T ss_pred eeeecccchhH
Confidence 99999987765
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-40 Score=318.31 Aligned_cols=197 Identities=40% Similarity=0.629 Sum_probs=176.7
Q ss_pred CCC-CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 58 PLP-PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 58 ~~~-~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
|.| .+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++..+.......
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~------ 190 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH------ 190 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc------
Confidence 444 6899999999999999999999999999999999999999999999999999999999999886432100
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
.....++++||++||||||.|+++.++.+.+..++++.
T Consensus 191 ------------------------------------------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~ 228 (518)
T PLN00206 191 ------------------------------------------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTA 228 (518)
T ss_pred ------------------------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEE
Confidence 00112388999999999999999999999999899999
Q ss_pred EEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 217 VVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
.++||.....+...+..+++|+|+||++|.+++.++.+.++++++|||||||+|+++||.+++..|+..+ +++|+
T Consensus 229 ~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-----~~~q~ 303 (518)
T PLN00206 229 LVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-----SQPQV 303 (518)
T ss_pred EEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-----CCCcE
Confidence 9999999998888888899999999999999999988899999999999999999999999999999876 25799
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||+|+++
T Consensus 304 l~~SATl~~~v 314 (518)
T PLN00206 304 LLFSATVSPEV 314 (518)
T ss_pred EEEEeeCCHHH
Confidence 99999999764
No 16
>KOG0340|consensus
Probab=100.00 E-value=5.4e-41 Score=295.64 Aligned_cols=188 Identities=40% Similarity=0.561 Sum_probs=175.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
..|++|||++|+.+.|+.+|+.+|||+|..|||.|++|+|++.+|.||||||++|.+|+++++.+.+.
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~------------ 74 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY------------ 74 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC------------
Confidence 46999999999999999999999999999999999999999999999999999999999999876642
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
+..++|++|||||+.|+.++|.-+++..++++++++|
T Consensus 75 -------------------------------------------giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG 111 (442)
T KOG0340|consen 75 -------------------------------------------GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG 111 (442)
T ss_pred -------------------------------------------cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc
Confidence 1568999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcC----CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERG----KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~----~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
|.+.-.+...|...+||+|+|||||.+++... ...+.+++++|+||||+|++..|.+.++.+++-+ |..||+
T Consensus 112 G~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l----P~~RQt 187 (442)
T KOG0340|consen 112 GTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL----PKPRQT 187 (442)
T ss_pred cHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC----CCccce
Confidence 99999999999999999999999999999765 2458999999999999999999999999999987 556999
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||+++.+
T Consensus 188 LlfSATitd~i 198 (442)
T KOG0340|consen 188 LLFSATITDTI 198 (442)
T ss_pred EEEEeehhhHH
Confidence 99999998765
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-39 Score=311.30 Aligned_cols=193 Identities=44% Similarity=0.726 Sum_probs=175.0
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSR 141 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~ 141 (308)
+|++|+|++.++++|.++||..||++|.++||.+++|+|++++||||||||++|++|+++.+.......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----------- 70 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----------- 70 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc-----------
Confidence 799999999999999999999999999999999999999999999999999999999999886542100
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecC
Q psy12758 142 KKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGG 221 (308)
Q Consensus 142 ~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 221 (308)
.....+++||++||+|||.|+.+.++.+....+++...++||
T Consensus 71 --------------------------------------~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg 112 (456)
T PRK10590 71 --------------------------------------KGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGG 112 (456)
T ss_pred --------------------------------------ccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 001125799999999999999999999999999999999999
Q ss_pred CchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 222 SNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 222 ~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.+...+...+..+++|+|+||++|++++....+.++++++|||||||+|++++|...++.++..+ +..+|+++|||
T Consensus 113 ~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l----~~~~q~l~~SA 188 (456)
T PRK10590 113 VSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKL----PAKRQNLLFSA 188 (456)
T ss_pred cCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhC----CccCeEEEEeC
Confidence 99988888888899999999999999999888889999999999999999999999999999887 56789999999
Q ss_pred cCCCCC
Q psy12758 302 TFPKEI 307 (308)
Q Consensus 302 Tl~~~v 307 (308)
|+++++
T Consensus 189 T~~~~~ 194 (456)
T PRK10590 189 TFSDDI 194 (456)
T ss_pred CCcHHH
Confidence 998754
No 18
>KOG0347|consensus
Probab=100.00 E-value=3.2e-40 Score=304.40 Aligned_cols=205 Identities=34% Similarity=0.525 Sum_probs=177.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
..|..|+||..++++|..+||..||+||..+||.+..| .|++..|.||||||+||-+|++..+.......
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s--------- 251 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDS--------- 251 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchH---------
Confidence 35999999999999999999999999999999999999 79999999999999999999999876654310
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
+.....+.....+.+||++||||||.|+.+.+..++...++++..++
T Consensus 252 ---------------------------------~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~ 298 (731)
T KOG0347|consen 252 ---------------------------------QELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASIT 298 (731)
T ss_pred ---------------------------------hhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEee
Confidence 01111112222245999999999999999999999999999999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCc---CCCCCceEEechhhhcccCCCHHHHHHHHHhcC-CCCCCCce
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKI---GLANCRFLVLDEADRMLDMGFEPQIRCIVQENG-MPRTGDRQ 295 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~---~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~-~~~~~~~q 295 (308)
||.....|.+.|...++|+|+|||||+.+++.+.. .++++++||+||||+|++.|+.+.+..|+..++ ......+|
T Consensus 299 GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQ 378 (731)
T KOG0347|consen 299 GGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQ 378 (731)
T ss_pred chhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999987654 478899999999999999999999999999987 33455789
Q ss_pred EEEEeecCCCCC
Q psy12758 296 TLMFSATFPKEI 307 (308)
Q Consensus 296 ~i~~SATl~~~v 307 (308)
+++|||||+-..
T Consensus 379 TlVFSATlt~~~ 390 (731)
T KOG0347|consen 379 TLVFSATLTLVL 390 (731)
T ss_pred eEEEEEEeehhh
Confidence 999999997543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.6e-39 Score=310.35 Aligned_cols=188 Identities=41% Similarity=0.689 Sum_probs=173.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|++|+|++.++++|.++||.+|||+|.++||.++.|+|++++||||||||++|++|+++.+....
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------------- 70 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------------- 70 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-------------
Confidence 5799999999999999999999999999999999999999999999999999999999999874321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
..+++||++||+||+.|+.++++.++... ++++..++
T Consensus 71 ------------------------------------------~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~ 108 (460)
T PRK11776 71 ------------------------------------------FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLC 108 (460)
T ss_pred ------------------------------------------CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 11578999999999999999999988765 78999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
||.+...+...+..+++|+|+||++|.+++.++.+.++++++|||||||+|++++|...+..++..+ +..+|+++|
T Consensus 109 Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~----~~~~q~ll~ 184 (460)
T PRK11776 109 GGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQA----PARRQTLLF 184 (460)
T ss_pred CCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC----CcccEEEEE
Confidence 9999999999999999999999999999999998999999999999999999999999999999987 568999999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+.+
T Consensus 185 SAT~~~~~ 192 (460)
T PRK11776 185 SATYPEGI 192 (460)
T ss_pred EecCcHHH
Confidence 99998764
No 20
>KOG0346|consensus
Probab=100.00 E-value=4.7e-40 Score=296.46 Aligned_cols=195 Identities=31% Similarity=0.475 Sum_probs=171.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++||++.|++|+.+.||.+||-||..+||.+++|+|+++.|.||||||+||++|+++.++......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---------- 88 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---------- 88 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----------
Confidence 5899999999999999999999999999999999999999999999999999999999999998875311
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCC--CceEEE
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQ--LRPCVV 218 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~--~~~~~~ 218 (308)
....++.++|++||||||.|++..+.++..... +++.-+
T Consensus 89 ---------------------------------------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl 129 (569)
T KOG0346|consen 89 ---------------------------------------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINL 129 (569)
T ss_pred ---------------------------------------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 123448899999999999999999988887664 555555
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCC-cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGK-IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~-~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
....+.......|...+||+|+||++++.++..+. ..++.+++||+||||.++.-||+++++.|..++ |...|.+
T Consensus 130 ~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L----Pr~~Q~~ 205 (569)
T KOG0346|consen 130 ASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL----PRIYQCF 205 (569)
T ss_pred hcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhC----Cchhhhe
Confidence 55555555567788889999999999999999887 678999999999999999999999999999998 6789999
Q ss_pred EEeecCCCCCC
Q psy12758 298 MFSATFPKEIQ 308 (308)
Q Consensus 298 ~~SATl~~~v~ 308 (308)
++|||++++||
T Consensus 206 LmSATl~dDv~ 216 (569)
T KOG0346|consen 206 LMSATLSDDVQ 216 (569)
T ss_pred eehhhhhhHHH
Confidence 99999999875
No 21
>KOG0333|consensus
Probab=100.00 E-value=1.6e-39 Score=298.47 Aligned_cols=204 Identities=41% Similarity=0.678 Sum_probs=183.7
Q ss_pred CCC-CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 58 PLP-PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 58 ~~~-~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
|.| .+|+|.++|..+++.+.+.||..|||||..+||..++.+|+|..|.||||||+||++|++.++...++...
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~----- 315 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR----- 315 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch-----
Confidence 445 58999999999999999999999999999999999999999999999999999999999999877653211
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
......+|+++|++|||||+.||..+...+++..+++++
T Consensus 316 -----------------------------------------~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~v 354 (673)
T KOG0333|consen 316 -----------------------------------------LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTV 354 (673)
T ss_pred -----------------------------------------hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEE
Confidence 112334599999999999999999999999999999999
Q ss_pred EEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCC----
Q psy12758 217 VVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTG---- 292 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~---- 292 (308)
.++||....++...+..+|+|+|+|||+|.+.|.+..+.++.+.|+|+||||+|+|+||++++..|+.+++...-.
T Consensus 355 svigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~td 434 (673)
T KOG0333|consen 355 SVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTD 434 (673)
T ss_pred EEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987543211
Q ss_pred -----------------CceEEEEeecCCCCC
Q psy12758 293 -----------------DRQTLMFSATFPKEI 307 (308)
Q Consensus 293 -----------------~~q~i~~SATl~~~v 307 (308)
-+|++|||||+|+.|
T Consensus 435 e~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 435 EKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred chhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 179999999999865
No 22
>KOG0326|consensus
Probab=100.00 E-value=1.9e-40 Score=288.73 Aligned_cols=192 Identities=33% Similarity=0.634 Sum_probs=179.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 57 LPLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 57 ~~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
...-..|+++.|..+++..+.+.||+.|+|+|.++||+++.|+|+++.|.+|+|||.||.+|+|+.+-...
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------- 151 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------- 151 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc---------
Confidence 33446899999999999999999999999999999999999999999999999999999999999873322
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
...+++|++||||||.|+.+.++++++..++++.
T Consensus 152 ----------------------------------------------~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vm 185 (459)
T KOG0326|consen 152 ----------------------------------------------NVIQAIILVPTRELALQTSQVCKELSKHLGIKVM 185 (459)
T ss_pred ----------------------------------------------cceeEEEEeecchhhHHHHHHHHHHhcccCeEEE
Confidence 2277999999999999999999999999999999
Q ss_pred EEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 217 VVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
...||++..+++-.+..++|++|+||||++++.+++.-.++++.+||+||||.|++..|.+.++.++..+ |+++|+
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~l----P~~rQi 261 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFL----PKERQI 261 (459)
T ss_pred EecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhC----Ccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 779999
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||||-.|
T Consensus 262 llySATFP~tV 272 (459)
T KOG0326|consen 262 LLYSATFPLTV 272 (459)
T ss_pred eEEecccchhH
Confidence 99999999755
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-39 Score=312.79 Aligned_cols=197 Identities=41% Similarity=0.663 Sum_probs=174.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|++|+|++.++++|.++||..||+||.++||.+++|+|++++||||||||++|++|+++.+.......
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~---------- 78 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA---------- 78 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc----------
Confidence 4699999999999999999999999999999999999999999999999999999999999887542100
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
......+++|||+||+||+.|+++.++.+....++++..++|
T Consensus 79 --------------------------------------~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~G 120 (572)
T PRK04537 79 --------------------------------------DRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG 120 (572)
T ss_pred --------------------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEEC
Confidence 001112789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcC-CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERG-KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.....+...+..+++|+|+||++|++++.+. .+.+..+++|||||||+|++++|..+++.|+..++. ...+|+++|
T Consensus 121 g~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~--~~~~q~ll~ 198 (572)
T PRK04537 121 GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE--RGTRQTLLF 198 (572)
T ss_pred CCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccc--ccCceEEEE
Confidence 99998888888888999999999999999775 477899999999999999999999999999998732 236899999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||++..+
T Consensus 199 SATl~~~v 206 (572)
T PRK04537 199 SATLSHRV 206 (572)
T ss_pred eCCccHHH
Confidence 99998754
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-38 Score=313.62 Aligned_cols=188 Identities=42% Similarity=0.663 Sum_probs=173.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|++|+|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|+++.+....
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~------------- 72 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------------- 72 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-------------
Confidence 4799999999999999999999999999999999999999999999999999999999998874321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
..+++||++||++|+.|+++.+..+.... ++++..++
T Consensus 73 ------------------------------------------~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~ 110 (629)
T PRK11634 73 ------------------------------------------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALY 110 (629)
T ss_pred ------------------------------------------CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEE
Confidence 12789999999999999999999988765 78999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
||.....+.+.+..+++|+|+||++|.+++.++.+.++++++|||||||.|++++|.+++..|+..+ +..+|+++|
T Consensus 111 gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l----p~~~q~llf 186 (629)
T PRK11634 111 GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI----PEGHQTALF 186 (629)
T ss_pred CCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhC----CCCCeEEEE
Confidence 9999999999998899999999999999999999999999999999999999999999999999987 568999999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+.+
T Consensus 187 SAT~p~~i 194 (629)
T PRK11634 187 SATMPEAI 194 (629)
T ss_pred EccCChhH
Confidence 99999764
No 25
>KOG0328|consensus
Probab=100.00 E-value=1.1e-39 Score=279.80 Aligned_cols=191 Identities=38% Similarity=0.600 Sum_probs=179.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCC
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~ 137 (308)
.+.++|+++||.+++++++...||++|+.||+.|||.++.|+|++++|++|+|||.+|-+.+++.+--.
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~----------- 92 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS----------- 92 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----------
Confidence 345799999999999999999999999999999999999999999999999999999999988754211
Q ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEE
Q psy12758 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 217 (308)
Q Consensus 138 ~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~ 217 (308)
.+..+++|+.|||||+.|+.+.+..++.+.++.+..
T Consensus 93 --------------------------------------------~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ha 128 (400)
T KOG0328|consen 93 --------------------------------------------VRETQALILSPTRELAVQIQKVILALGDYMNVQCHA 128 (400)
T ss_pred --------------------------------------------cceeeEEEecChHHHHHHHHHHHHHhcccccceEEE
Confidence 122679999999999999999999999999999999
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEE
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
+.||.+..++++.+..|++++.|||||++++++++.+..+.+++||+||||.|++.||.+++..|.+.+ +++.|++
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l----p~~~Qvv 204 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL----PPGAQVV 204 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC----CCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 7799999
Q ss_pred EEeecCCCCC
Q psy12758 298 MFSATFPKEI 307 (308)
Q Consensus 298 ~~SATl~~~v 307 (308)
++|||+|.+|
T Consensus 205 ~~SATlp~ei 214 (400)
T KOG0328|consen 205 LVSATLPHEI 214 (400)
T ss_pred EEeccCcHHH
Confidence 9999999875
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.4e-38 Score=297.56 Aligned_cols=189 Identities=38% Similarity=0.597 Sum_probs=173.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSR 141 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~ 141 (308)
+|++|++++.++++|.++||..||++|.++||.++.|+|++++||||+|||++|++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~------------ 69 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR------------ 69 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc------------
Confidence 69999999999999999999999999999999999999999999999999999999999988654210
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecC
Q psy12758 142 KKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGG 221 (308)
Q Consensus 142 ~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 221 (308)
....+++||++||+||+.|+++.+..++...++++..++||
T Consensus 70 ---------------------------------------~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg 110 (434)
T PRK11192 70 ---------------------------------------KSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGG 110 (434)
T ss_pred ---------------------------------------CCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECC
Confidence 01126799999999999999999999999999999999999
Q ss_pred CchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 222 SNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 222 ~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.....+...+..+++|+|+||++|.+++.++.+.+.++++|||||||+|++++|...+..+...+ +..+|+++|||
T Consensus 111 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~----~~~~q~~~~SA 186 (434)
T PRK11192 111 VAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET----RWRKQTLLFSA 186 (434)
T ss_pred CCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC----ccccEEEEEEe
Confidence 99988888888889999999999999999999999999999999999999999999999998876 45689999999
Q ss_pred cCCC
Q psy12758 302 TFPK 305 (308)
Q Consensus 302 Tl~~ 305 (308)
|++.
T Consensus 187 T~~~ 190 (434)
T PRK11192 187 TLEG 190 (434)
T ss_pred ecCH
Confidence 9974
No 27
>KOG0334|consensus
Probab=100.00 E-value=4e-39 Score=316.60 Aligned_cols=196 Identities=47% Similarity=0.803 Sum_probs=177.6
Q ss_pred CCC-CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 58 PLP-PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 58 ~~~-~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
|+| .+|.+.|++..++..++++||..||+||.+|||+|++|+|+|.+|.||||||++|++|++.+....+..
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~------- 433 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL------- 433 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-------
Confidence 555 689999999999999999999999999999999999999999999999999999999999776655431
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
....+|.++|++|||||+.||+++++.|++.++++++
T Consensus 434 -------------------------------------------~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v 470 (997)
T KOG0334|consen 434 -------------------------------------------EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVV 470 (997)
T ss_pred -------------------------------------------hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEE
Confidence 1223599999999999999999999999999999999
Q ss_pred EEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCC---cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCC
Q psy12758 217 VVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGK---IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGD 293 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~---~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~ 293 (308)
++|||....+++..+++++.|+|||||+..+++.... .++.++.+||+||||+|++++|++++..|+.++ .+.
T Consensus 471 ~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl----rpd 546 (997)
T KOG0334|consen 471 CVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL----RPD 546 (997)
T ss_pred EecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhc----chh
Confidence 9999999999999999999999999999999985544 446666799999999999999999999999998 679
Q ss_pred ceEEEEeecCCCCC
Q psy12758 294 RQTLMFSATFPKEI 307 (308)
Q Consensus 294 ~q~i~~SATl~~~v 307 (308)
+|+++||||||..+
T Consensus 547 rQtvlfSatfpr~m 560 (997)
T KOG0334|consen 547 RQTVLFSATFPRSM 560 (997)
T ss_pred hhhhhhhhhhhHHH
Confidence 99999999999753
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-36 Score=292.50 Aligned_cols=196 Identities=41% Similarity=0.651 Sum_probs=173.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|.+++|++.++++|.+.||.+||++|.++|+.+++|+|++++|+||||||++|++|+++.+.......
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~---------- 156 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK---------- 156 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc----------
Confidence 5799999999999999999999999999999999999999999999999999999999999987653210
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
......+++|||+||++|+.|+++.++.+.+..++++..++|
T Consensus 157 --------------------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~g 198 (475)
T PRK01297 157 --------------------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVG 198 (475)
T ss_pred --------------------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEc
Confidence 001112789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhc-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLD-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.+...+.+.+. ..++|+|+||++|++++.++...++++++|||||||.+++++|...++.|+..+.. ..++|++++
T Consensus 199 g~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~--~~~~q~i~~ 276 (475)
T PRK01297 199 GMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR--KEERQTLLF 276 (475)
T ss_pred cCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCC--CCCceEEEE
Confidence 988887777764 56899999999999999998888999999999999999999999999999988632 336799999
Q ss_pred eecCCCC
Q psy12758 300 SATFPKE 306 (308)
Q Consensus 300 SATl~~~ 306 (308)
|||++.+
T Consensus 277 SAT~~~~ 283 (475)
T PRK01297 277 SATFTDD 283 (475)
T ss_pred EeecCHH
Confidence 9999864
No 29
>KOG0337|consensus
Probab=100.00 E-value=5.6e-38 Score=281.79 Aligned_cols=188 Identities=36% Similarity=0.644 Sum_probs=177.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
-+|..+||+..+.+++.+.||..|||||++.||.+++|+|++..|-||||||.||++|+++.+....
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s------------- 87 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------------- 87 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------------
Confidence 4799999999999999999999999999999999999999999999999999999999999986542
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
+.+.+++|+.|||||+.|..+..+.++++.++++.+++|
T Consensus 88 -----------------------------------------~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~g 126 (529)
T KOG0337|consen 88 -----------------------------------------QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVG 126 (529)
T ss_pred -----------------------------------------ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcc
Confidence 223789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|....++...+..++|||++|||+++++.....+.|+.+.|+|+||||+++++||.+++..++.++ +.++|+++||
T Consensus 127 gD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl----~~~~QTllfS 202 (529)
T KOG0337|consen 127 GDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL----PESRQTLLFS 202 (529)
T ss_pred cchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhC----CCcceEEEEe
Confidence 999999999999999999999999999887777889999999999999999999999999999998 6788999999
Q ss_pred ecCCCC
Q psy12758 301 ATFPKE 306 (308)
Q Consensus 301 ATl~~~ 306 (308)
||+|+.
T Consensus 203 atlp~~ 208 (529)
T KOG0337|consen 203 ATLPRD 208 (529)
T ss_pred ccCchh
Confidence 999976
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.1e-35 Score=275.43 Aligned_cols=188 Identities=35% Similarity=0.543 Sum_probs=170.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
..+|+++++++.+.++|.+.||..|+++|.++|+.+++|+|++++||||||||++|++|+++.+....
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~------------ 94 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL------------ 94 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC------------
Confidence 36899999999999999999999999999999999999999999999999999999999998763211
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
...++||++||++|+.|+.+.+..++...++.+..++
T Consensus 95 -------------------------------------------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~ 131 (401)
T PTZ00424 95 -------------------------------------------NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACV 131 (401)
T ss_pred -------------------------------------------CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 1167999999999999999999999988888888899
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
||.....+...+..+++|+|+||++|.+++.++...++++++|||||||++++.+|...+..++..+ +.+.|++++
T Consensus 132 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~ 207 (401)
T PTZ00424 132 GGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKL----PPDVQVALF 207 (401)
T ss_pred CCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhC----CCCcEEEEE
Confidence 9998888888888889999999999999998888889999999999999999999998898888876 557899999
Q ss_pred eecCCCC
Q psy12758 300 SATFPKE 306 (308)
Q Consensus 300 SATl~~~ 306 (308)
|||+|++
T Consensus 208 SAT~~~~ 214 (401)
T PTZ00424 208 SATMPNE 214 (401)
T ss_pred EecCCHH
Confidence 9999875
No 31
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=5.9e-34 Score=244.25 Aligned_cols=188 Identities=54% Similarity=0.862 Sum_probs=170.5
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy12758 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRK 142 (308)
Q Consensus 63 f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~ 142 (308)
|+++++++.+.+.|.+.||..|+++|.++++.+.+|+|+++++|||+|||++|++|+++.+.....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~-------------- 66 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK-------------- 66 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------------
Confidence 789999999999999999999999999999999999999999999999999999999998866520
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCC
Q psy12758 143 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGS 222 (308)
Q Consensus 143 ~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 222 (308)
..+++++|++|+++|+.|+.+.++.+....++++..++|+.
T Consensus 67 ---------------------------------------~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 107 (203)
T cd00268 67 ---------------------------------------KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGT 107 (203)
T ss_pred ---------------------------------------cCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 11278999999999999999999999988889999999999
Q ss_pred chhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 223 NVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 223 ~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
........+..+++|+|+||++|.+++.+....+++++++|+||+|.+.+.+|...+..++..+ ...+|++++|||
T Consensus 108 ~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l----~~~~~~~~~SAT 183 (203)
T cd00268 108 SIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLL----PKDRQTLLFSAT 183 (203)
T ss_pred CHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhC----CcccEEEEEecc
Confidence 8877777777789999999999999999888889999999999999999999999999999987 347999999999
Q ss_pred CCCCC
Q psy12758 303 FPKEI 307 (308)
Q Consensus 303 l~~~v 307 (308)
+++++
T Consensus 184 ~~~~~ 188 (203)
T cd00268 184 MPKEV 188 (203)
T ss_pred CCHHH
Confidence 99754
No 32
>KOG4284|consensus
Probab=100.00 E-value=5e-35 Score=274.15 Aligned_cols=196 Identities=29% Similarity=0.487 Sum_probs=176.7
Q ss_pred CccccCCCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCC
Q psy12758 52 TDTFLLPLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPT 131 (308)
Q Consensus 52 ~~~~~~~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~ 131 (308)
+.+.....++.|++|-|...++..|++++|..||+||..|||.++.+-|+||+|..|+|||+.|.+.+++.+..+.
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~---- 91 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS---- 91 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc----
Confidence 3344455678999999999999999999999999999999999999999999999999999999998888764332
Q ss_pred CCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhc-
Q psy12758 132 PPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYR- 210 (308)
Q Consensus 132 ~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~- 210 (308)
..++.+|++||||++.||.+.+..++..
T Consensus 92 ---------------------------------------------------~~~q~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 92 ---------------------------------------------------SHIQKVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred ---------------------------------------------------CcceeEEEecchhhhhHHHHHHHHhcccc
Confidence 2288999999999999999999999974
Q ss_pred CCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCC
Q psy12758 211 SQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMP 289 (308)
Q Consensus 211 ~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~ 289 (308)
.+.+|.+++||+....+...++ .++|+||||||+..+++.+.++.++++++|+||||.|++ ..|.+++..|++.+
T Consensus 121 ~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~sl--- 196 (980)
T KOG4284|consen 121 TGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSL--- 196 (980)
T ss_pred cCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhc---
Confidence 4899999999999888877775 478999999999999999999999999999999999999 56999999999998
Q ss_pred CCCCceEEEEeecCCCCC
Q psy12758 290 RTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 290 ~~~~~q~i~~SATl~~~v 307 (308)
|..+|+++||||+|+.+
T Consensus 197 -P~~rQv~a~SATYp~nL 213 (980)
T KOG4284|consen 197 -PQIRQVAAFSATYPRNL 213 (980)
T ss_pred -chhheeeEEeccCchhH
Confidence 77899999999999764
No 33
>KOG0327|consensus
Probab=100.00 E-value=2e-34 Score=256.94 Aligned_cols=190 Identities=40% Similarity=0.598 Sum_probs=173.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
+-.+|++++|++.|++.+...||++|+.||+.||..+..|+|+++++++|||||.+|++++++.+--.
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------------ 91 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------------ 91 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------------
Confidence 34589999999999999999999999999999999999999999999999999999999999986211
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
....++++++|||||+.|+....+.++...++++..+
T Consensus 92 -------------------------------------------~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~ 128 (397)
T KOG0327|consen 92 -------------------------------------------VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHAC 128 (397)
T ss_pred -------------------------------------------hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeee
Confidence 1126799999999999999999999999999999999
Q ss_pred ecCCchhHhHHh-hcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEE
Q psy12758 219 YGGSNVGDQMRD-LDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 219 ~gg~~~~~~~~~-l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
.||.+...+... +...++|+|+|||++.++++++.+..+.++++|+||||.|+..||.++++.|++++ +.+.|++
T Consensus 129 igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l----p~~vQv~ 204 (397)
T KOG0327|consen 129 IGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQEL----PSDVQVV 204 (397)
T ss_pred cCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHc----Ccchhhe
Confidence 999988755444 45679999999999999999998888999999999999999999999999999998 6688999
Q ss_pred EEeecCCCCC
Q psy12758 298 MFSATFPKEI 307 (308)
Q Consensus 298 ~~SATl~~~v 307 (308)
++|||+|.++
T Consensus 205 l~SAT~p~~v 214 (397)
T KOG0327|consen 205 LLSATMPSDV 214 (397)
T ss_pred eecccCcHHH
Confidence 9999999875
No 34
>KOG0329|consensus
Probab=100.00 E-value=8.9e-34 Score=240.41 Aligned_cols=189 Identities=32% Similarity=0.505 Sum_probs=170.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
..|.++-|.+++++|+..+||++|+.+|.++||...-|-|++.+|.+|-|||..|.+..|+.+.-...
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g------------ 109 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG------------ 109 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC------------
Confidence 35999999999999999999999999999999999999999999999999999999999998732211
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
...++++|.|||||.||.++..++.++. .+++.++|
T Consensus 110 -------------------------------------------~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFf 146 (387)
T KOG0329|consen 110 -------------------------------------------QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 146 (387)
T ss_pred -------------------------------------------eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 1558999999999999999999999887 68999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
||.........+++.+||+|+||||++.+.+++.+++++++++|+||+|.|+++ ....+++.|++.. |...|+++
T Consensus 147 GG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~t----p~~KQvmm 222 (387)
T KOG0329|consen 147 GGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMM 222 (387)
T ss_pred cceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcC----cccceeee
Confidence 999999999999999999999999999999999999999999999999999875 3456677777654 67899999
Q ss_pred EeecCCCCCC
Q psy12758 299 FSATFPKEIQ 308 (308)
Q Consensus 299 ~SATl~~~v~ 308 (308)
||||++++|+
T Consensus 223 fsatlskeiR 232 (387)
T KOG0329|consen 223 FSATLSKEIR 232 (387)
T ss_pred eeeecchhhH
Confidence 9999999875
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.1e-32 Score=272.87 Aligned_cols=187 Identities=19% Similarity=0.242 Sum_probs=150.3
Q ss_pred CCccCC--CCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 61 PQFDDI--QMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 61 ~~f~~l--~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
..|..+ .+++.+.++|.++||++||++|.++||.+++|+|+++++|||||||+||++|+++.+.+...
T Consensus 12 a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~---------- 81 (742)
T TIGR03817 12 GRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPR---------- 81 (742)
T ss_pred cccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCC----------
Confidence 344443 37999999999999999999999999999999999999999999999999999998865421
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
+++||++|||||+.|+.+.++.+. ..++++..+
T Consensus 82 ----------------------------------------------~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~ 114 (742)
T TIGR03817 82 ----------------------------------------------ATALYLAPTKALAADQLRAVRELT-LRGVRPATY 114 (742)
T ss_pred ----------------------------------------------cEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEE
Confidence 679999999999999999999987 446777776
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcC----CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCC---CC
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERG----KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMP---RT 291 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~----~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~---~~ 291 (308)
.|+.. ..+.+.+..+++|+|+||++|...+-.. ...++++++|||||||.|.+ .|+..+..++.++... .+
T Consensus 115 ~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g 192 (742)
T TIGR03817 115 DGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYG 192 (742)
T ss_pred eCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcC
Confidence 66665 4455666677999999999997543211 12378999999999999977 4888777766654221 13
Q ss_pred CCceEEEEeecCCCC
Q psy12758 292 GDRQTLMFSATFPKE 306 (308)
Q Consensus 292 ~~~q~i~~SATl~~~ 306 (308)
.++|+++||||+++.
T Consensus 193 ~~~q~i~~SATi~n~ 207 (742)
T TIGR03817 193 ASPVFVLASATTADP 207 (742)
T ss_pred CCCEEEEEecCCCCH
Confidence 468999999999874
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=4.2e-31 Score=266.29 Aligned_cols=182 Identities=20% Similarity=0.276 Sum_probs=158.2
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
+.|++++|++.++++|.+.||.+|+|+|.+|++. +.+|+|++++||||||||++|.+|+++.+...
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~------------- 67 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG------------- 67 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------
Confidence 3699999999999999999999999999999998 78899999999999999999999999887422
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.+++|++|+++||.|.++.++.+.. .++++..+.
T Consensus 68 ---------------------------------------------~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~t 101 (737)
T PRK02362 68 ---------------------------------------------GKALYIVPLRALASEKFEEFERFEE-LGVRVGIST 101 (737)
T ss_pred ---------------------------------------------CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEe
Confidence 5689999999999999999997653 478888898
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|+...... . ...++|+|+||+++..++.++...+++++++|+||+|.+.+.+++..++.++.+++.. ..+.|++++
T Consensus 102 Gd~~~~~~--~-l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~-~~~~qii~l 177 (737)
T PRK02362 102 GDYDSRDE--W-LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL-NPDLQVVAL 177 (737)
T ss_pred CCcCcccc--c-cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc-CCCCcEEEE
Confidence 88765432 2 2357999999999999998776678999999999999999999999999998877543 346899999
Q ss_pred eecCCC
Q psy12758 300 SATFPK 305 (308)
Q Consensus 300 SATl~~ 305 (308)
|||+++
T Consensus 178 SATl~n 183 (737)
T PRK02362 178 SATIGN 183 (737)
T ss_pred cccCCC
Confidence 999975
No 37
>KOG0350|consensus
Probab=99.97 E-value=4.2e-31 Score=241.94 Aligned_cols=173 Identities=35% Similarity=0.537 Sum_probs=149.9
Q ss_pred CccCCCCCHHHHHH----------HHHCCCCCCcHHHHHHHhhHh---------cCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 62 QFDDIQMTEIITNN----------IALARYDKPTPVQKYAIPVII---------SGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 62 ~f~~l~l~~~l~~~----------L~~~~~~~pt~iQ~~~ip~i~---------~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
-|+.+++++.+... |.++++.+..|+|..++|.++ .++|+.|.||||||||+||.+||++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 47778877765444 899999999999999999986 25899999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHH
Q psy12758 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYD 202 (308)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 202 (308)
+..++- ..-+++|++||++|+.|+++
T Consensus 208 L~~R~v------------------------------------------------------~~LRavVivPtr~L~~QV~~ 233 (620)
T KOG0350|consen 208 LSSRPV------------------------------------------------------KRLRAVVIVPTRELALQVYD 233 (620)
T ss_pred HccCCc------------------------------------------------------cceEEEEEeeHHHHHHHHHH
Confidence 865531 11679999999999999999
Q ss_pred HHHHhhhcCCCceEEEecCCchhHhHHhhcC-C----CeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhcccCCCH
Q psy12758 203 EAKKFAYRSQLRPCVVYGGSNVGDQMRDLDR-G----CHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLDMGFE 276 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~----~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~~~f~ 276 (308)
.+..++...++.++.+.|..+.....+.|.+ . .||+|+|||||.+++++ ..++|++++||||||||+|++..|.
T Consensus 234 ~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 234 TFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred HHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHH
Confidence 9999999999999999999998888887743 2 39999999999999985 6699999999999999999999888
Q ss_pred HHHHHHHHhcCC
Q psy12758 277 PQIRCIVQENGM 288 (308)
Q Consensus 277 ~~l~~i~~~l~~ 288 (308)
+.+..++..+..
T Consensus 314 ~Wl~~v~~~~~~ 325 (620)
T KOG0350|consen 314 EWLDTVMSLCKT 325 (620)
T ss_pred HHHHHHHHHhCC
Confidence 888777766543
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=2.4e-30 Score=260.23 Aligned_cols=179 Identities=22% Similarity=0.327 Sum_probs=157.5
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
+|+++++++.+.+.|.+.||.+|+|+|.++++. +++|+|++++||||||||++|.+|+++.+...+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~------------- 68 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG------------- 68 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC-------------
Confidence 689999999999999999999999999999986 889999999999999999999999998875432
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.++||++|+++|+.|+++.++.+. ..++++..++|
T Consensus 69 --------------------------------------------~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~G 103 (720)
T PRK00254 69 --------------------------------------------GKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTG 103 (720)
T ss_pred --------------------------------------------CeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeC
Confidence 568999999999999999998764 45788889999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+...... . ...++|+|+||+++..++.++...++++++||+||+|.+.+.+++..++.++.++ ..+.|++++|
T Consensus 104 d~~~~~~--~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l----~~~~qiI~lS 176 (720)
T PRK00254 104 DYDSTDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM----LGRAQILGLS 176 (720)
T ss_pred CCCCchh--h-hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc----CcCCcEEEEE
Confidence 8765432 2 2468999999999999998777778999999999999999999999999999987 3468999999
Q ss_pred ecCCC
Q psy12758 301 ATFPK 305 (308)
Q Consensus 301 ATl~~ 305 (308)
||+++
T Consensus 177 ATl~n 181 (720)
T PRK00254 177 ATVGN 181 (720)
T ss_pred ccCCC
Confidence 99974
No 39
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.97 E-value=2.6e-30 Score=214.79 Aligned_cols=165 Identities=35% Similarity=0.601 Sum_probs=143.6
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHH
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDE 164 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~ 164 (308)
||+|.++|+.+.+|+|+++.||||+|||++|++|+++.+.+...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~------------------------------------ 44 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKD------------------------------------ 44 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSS------------------------------------
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCC------------------------------------
Confidence 79999999999999999999999999999999999998866521
Q ss_pred HHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchh-HhHHhhcCCCeEEEECcH
Q psy12758 165 AKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVG-DQMRDLDRGCHLLVATPG 243 (308)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~-~~~~~l~~~~~IlV~TP~ 243 (308)
.+++|++|+++|+.|..+.+..+....++++..++|+.... .....+..+++|+|+||+
T Consensus 45 --------------------~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~ 104 (169)
T PF00270_consen 45 --------------------ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPE 104 (169)
T ss_dssp --------------------SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHH
T ss_pred --------------------ceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcc
Confidence 46899999999999999999999988889999999998865 455556678999999999
Q ss_pred HHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 244 RLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 244 ~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
+|.+++..+..++.++++||+||+|.+.+.++...+..++..+... .+.|++++|||+++.+
T Consensus 105 ~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~--~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 105 QLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF--KNIQIILLSATLPSNV 166 (169)
T ss_dssp HHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT--TTSEEEEEESSSTHHH
T ss_pred hhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC--CCCcEEEEeeCCChhH
Confidence 9999999866677789999999999999988889999998886332 2588999999998544
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=2.5e-29 Score=256.43 Aligned_cols=188 Identities=22% Similarity=0.342 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccc
Q psy12758 68 MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 147 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
+++.+.+.+.+ +|..|||+|.++||.+++|+|++++||||||||++|++|+++.+....... .....
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----------~~~~~-- 84 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----------ELEDK-- 84 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----------CCCCC--
Confidence 57777776654 799999999999999999999999999999999999999999887542100 00112
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHH-----------HhhhcC-CCce
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAK-----------KFAYRS-QLRP 215 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~-----------~~~~~~-~~~~ 215 (308)
+++||++|+++|+.|+++.+. .++... ++++
T Consensus 85 -------------------------------------~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v 127 (876)
T PRK13767 85 -------------------------------------VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRV 127 (876)
T ss_pred -------------------------------------eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeE
Confidence 445566666666665554433 222333 6788
Q ss_pred EEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCc--CCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCC
Q psy12758 216 CVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKI--GLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGD 293 (308)
Q Consensus 216 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~--~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~ 293 (308)
...+|+.....+.+.+.++++|+|+||++|..++.+..+ .++++++|||||+|.+++..++..+..++.++......+
T Consensus 128 ~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~ 207 (876)
T PRK13767 128 AIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGE 207 (876)
T ss_pred EEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCC
Confidence 889999998888888888999999999999988866543 478999999999999999888888877776664443457
Q ss_pred ceEEEEeecCCC
Q psy12758 294 RQTLMFSATFPK 305 (308)
Q Consensus 294 ~q~i~~SATl~~ 305 (308)
.|++++|||+++
T Consensus 208 ~q~IglSATl~~ 219 (876)
T PRK13767 208 FVRIGLSATIEP 219 (876)
T ss_pred CeEEEEecccCC
Confidence 899999999975
No 41
>KOG0332|consensus
Probab=99.96 E-value=2e-30 Score=230.22 Aligned_cols=185 Identities=30% Similarity=0.533 Sum_probs=160.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
.+|+||+|.++++++|..|+|.+|+.||..|+|.++.. +|+|+++++|||||.||.+.+|.+.--.
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~------------ 157 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD------------ 157 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc------------
Confidence 58999999999999999999999999999999999987 7999999999999999999999875322
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
...|+++.|+||||||.|+.+.+.+.+++.++.....
T Consensus 158 -------------------------------------------~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~ya 194 (477)
T KOG0332|consen 158 -------------------------------------------VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYA 194 (477)
T ss_pred -------------------------------------------ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEE
Confidence 1228899999999999999999999999998888887
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
+.|....+... -..+|+|+|||.+++++.. +.+++..++.+|+||||.|++. ||.++--.|...+ +.+.|.
T Consensus 195 ir~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l----P~~~Ql 267 (477)
T KOG0332|consen 195 IRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL----PRNQQL 267 (477)
T ss_pred ecCcccccCCc---chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc----CCcceE
Confidence 66653222111 1247999999999999988 8899999999999999999985 7999999998887 568999
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||+.+.|
T Consensus 268 lLFSATf~e~V 278 (477)
T KOG0332|consen 268 LLFSATFVEKV 278 (477)
T ss_pred EeeechhHHHH
Confidence 99999997643
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=5.1e-29 Score=247.14 Aligned_cols=189 Identities=22% Similarity=0.200 Sum_probs=151.9
Q ss_pred CCCCCCcHHHHHHHhhHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccc-cccchH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGR-DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLV-LAPTRE 156 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~-d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li-~~pt~~ 156 (308)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++... .. ...++.+| ++||||
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~~----------------~~~~~rLv~~vPtRe 73 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-IG----------------AKVPRRLVYVVNRRT 73 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-cc----------------ccccceEEEeCchHH
Confidence 5898 9999999999999998 688889999999997765555321 10 12244555 669999
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCe
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 236 (308)
|+.|++++++++. +.+...|+++++.|.........+..++++..++||.+...++..+..+++
T Consensus 74 La~Qi~~~~~~~~----------------k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~ 137 (844)
T TIGR02621 74 VVDQVTEEAEKIG----------------ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPA 137 (844)
T ss_pred HHHHHHHHHHHHH----------------HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCc
Confidence 9999999999984 334566788888888777777777778999999999999999999999999
Q ss_pred EEEECcHHHHHHHHcCCcC----------------CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCC-CCCceEEEE
Q psy12758 237 LLVATPGRLVDMLERGKIG----------------LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPR-TGDRQTLMF 299 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~~~----------------l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~-~~~~q~i~~ 299 (308)
|||||+ +++.++.++ ++++++||||||| ++++|.++++.|+..+..+. ...+|+++|
T Consensus 138 IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLF 211 (844)
T TIGR02621 138 VIVGTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVEL 211 (844)
T ss_pred EEEECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEE
Confidence 999995 666555542 6889999999999 78999999999999752222 123799999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|.++
T Consensus 212 SAT~p~ei 219 (844)
T TIGR02621 212 TATSRTDG 219 (844)
T ss_pred ecCCCccH
Confidence 99999764
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=2e-28 Score=244.96 Aligned_cols=180 Identities=17% Similarity=0.257 Sum_probs=154.5
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSR 141 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~ 141 (308)
+|++++|++.+++.+.+.+|. ++++|.++++.+.+|+|++++||||||||+++.++++..+...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~--------------- 65 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG--------------- 65 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---------------
Confidence 689999999999999999997 9999999999999999999999999999999999999876432
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecC
Q psy12758 142 KKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGG 221 (308)
Q Consensus 142 ~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 221 (308)
.+++|++|+++|+.|+++.++++. ..++++...+|+
T Consensus 66 -------------------------------------------~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~ 101 (674)
T PRK01172 66 -------------------------------------------LKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGD 101 (674)
T ss_pred -------------------------------------------CcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCC
Confidence 568899999999999999998764 457888888887
Q ss_pred CchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 222 SNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 222 ~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
...... ..+.++|+|+||+++..++.+....+.+++++|+||||.+.+.+++..++.++..++.. ..+.|++++||
T Consensus 102 ~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~-~~~~riI~lSA 177 (674)
T PRK01172 102 YDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV-NPDARILALSA 177 (674)
T ss_pred CCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc-CcCCcEEEEeC
Confidence 654322 12467999999999999998877778999999999999999999999999988766433 34789999999
Q ss_pred cCCC
Q psy12758 302 TFPK 305 (308)
Q Consensus 302 Tl~~ 305 (308)
|+++
T Consensus 178 Tl~n 181 (674)
T PRK01172 178 TVSN 181 (674)
T ss_pred ccCC
Confidence 9975
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=5.6e-28 Score=238.62 Aligned_cols=186 Identities=25% Similarity=0.329 Sum_probs=164.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccc
Q psy12758 68 MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 147 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
|++.+++.+++. |..||+.|.+|||.+.+|+|+++.||||||||+|+++|++..+.+.+. ..
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-~~---------------- 69 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-GK---------------- 69 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-CC----------------
Confidence 689999999887 999999999999999999999999999999999999999999988741 00
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQ 227 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 227 (308)
...+..+||++|-|+|.+.+...++......|+.+..-+|++...+.
T Consensus 70 ---------------------------------~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er 116 (814)
T COG1201 70 ---------------------------------LEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEK 116 (814)
T ss_pred ---------------------------------CCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHh
Confidence 11126689999999999999999999999999999999999999999
Q ss_pred HHhhcCCCeEEEECcHHHHHHHHcCCc--CCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 228 MRDLDRGCHLLVATPGRLVDMLERGKI--GLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 228 ~~~l~~~~~IlV~TP~~L~~~l~~~~~--~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
.+...+.+||||+||+.|.-++....+ .|++++++||||+|.+.+...+.++-.-++++....+ +.|.|++|||+.+
T Consensus 117 ~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~ 195 (814)
T COG1201 117 QKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP 195 (814)
T ss_pred hhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC
Confidence 999999999999999999998876543 3899999999999999998888888877777766555 8999999999864
No 45
>KOG0344|consensus
Probab=99.95 E-value=2e-28 Score=228.77 Aligned_cols=194 Identities=38% Similarity=0.547 Sum_probs=159.5
Q ss_pred CCccC----CCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 61 PQFDD----IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 61 ~~f~~----l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
.+|.+ ..++..+++.+...+|..|||+|.+|||.++.++|+++|||||||||++|++|+++++.....
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-------- 203 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-------- 203 (593)
T ss_pred ccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc--------
Confidence 57887 468999999999999999999999999999999999999999999999999999999876531
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhh--hcCCCc
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFA--YRSQLR 214 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~--~~~~~~ 214 (308)
.....+-+++|+.|||+|+.|++.++..+. ...+.+
T Consensus 204 ------------------------------------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~ 241 (593)
T KOG0344|consen 204 ------------------------------------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLR 241 (593)
T ss_pred ------------------------------------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchh
Confidence 011223678889999999999999999988 666666
Q ss_pred eEEEecCCchhHh-HHhhcCCCeEEEECcHHHHHHHHcCC--cCCCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCC
Q psy12758 215 PCVVYGGSNVGDQ-MRDLDRGCHLLVATPGRLVDMLERGK--IGLANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPR 290 (308)
Q Consensus 215 ~~~~~gg~~~~~~-~~~l~~~~~IlV~TP~~L~~~l~~~~--~~l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~ 290 (308)
...+......... .......++|+|+||.++..++..+. +++.++.++|+||||++++. .|..++..|+..+..
T Consensus 242 a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-- 319 (593)
T KOG0344|consen 242 AAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-- 319 (593)
T ss_pred hhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC--
Confidence 6555443322221 12223457999999999999998876 78999999999999999999 999999999998754
Q ss_pred CCCceEEEEeecCCCCC
Q psy12758 291 TGDRQTLMFSATFPKEI 307 (308)
Q Consensus 291 ~~~~q~i~~SATl~~~v 307 (308)
++..+-+||||+|.+|
T Consensus 320 -~~i~~a~FSat~~~~V 335 (593)
T KOG0344|consen 320 -PDIRVALFSATISVYV 335 (593)
T ss_pred -cchhhhhhhccccHHH
Confidence 4678899999999775
No 46
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=7.6e-27 Score=241.99 Aligned_cols=167 Identities=21% Similarity=0.277 Sum_probs=134.2
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|+ .||++|..++|.++.|+|++++||||||||+ |+++++..+...
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~-------------------------------- 122 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK-------------------------------- 122 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc--------------------------------
Confidence 477 8999999999999999999999999999996 666665544221
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCch-----hHhHHhhc-
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNV-----GDQMRDLD- 232 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~- 232 (308)
+++++|++||++|+.|+++.++.++...++.+..++|+... ..+...+.
T Consensus 123 -------------------------g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~ 177 (1176)
T PRK09401 123 -------------------------GKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE 177 (1176)
T ss_pred -------------------------CCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhc
Confidence 16799999999999999999999999988888888877542 22333444
Q ss_pred CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-----------CCCH-HHHHHHHHhcCCC-----------
Q psy12758 233 RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-----------MGFE-PQIRCIVQENGMP----------- 289 (308)
Q Consensus 233 ~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-----------~~f~-~~l~~i~~~l~~~----------- 289 (308)
..++|+|+||++|.+++. .+...++++|||||||+|++ .||. ++++.++..++..
T Consensus 178 ~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~ 255 (1176)
T PRK09401 178 GDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIR 255 (1176)
T ss_pred CCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHH
Confidence 469999999999999887 45566799999999999996 6885 6788888776431
Q ss_pred ---------CCCCceEEEEeecCCCC
Q psy12758 290 ---------RTGDRQTLMFSATFPKE 306 (308)
Q Consensus 290 ---------~~~~~q~i~~SATl~~~ 306 (308)
....+|+++||||+++.
T Consensus 256 ~l~~~i~~~~~~~~q~ilfSAT~~~~ 281 (1176)
T PRK09401 256 ELEEKIAELKDKKGVLVVSSATGRPR 281 (1176)
T ss_pred HHHHhhhhcccCCceEEEEeCCCCcc
Confidence 11268999999999863
No 47
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=2.2e-25 Score=231.37 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=131.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q psy12758 72 ITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVL 151 (308)
Q Consensus 72 l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~ 151 (308)
+.+.+.+....+||++|+.++|.++.|+|++++||||||||+ |.+|++..+...
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~------------------------- 120 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK------------------------- 120 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------------------------
Confidence 444455544558999999999999999999999999999997 777777655322
Q ss_pred ccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE---EEecCCchhHhH
Q psy12758 152 APTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC---VVYGGSNVGDQM 228 (308)
Q Consensus 152 ~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~---~~~gg~~~~~~~ 228 (308)
+++++|++||++|+.|+++.++.++...+++.. .++||.+...+.
T Consensus 121 --------------------------------g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~ 168 (1171)
T TIGR01054 121 --------------------------------GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKK 168 (1171)
T ss_pred --------------------------------CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHH
Confidence 167999999999999999999999988776654 367888766543
Q ss_pred ---Hhhc-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-----------CCCHHH-HHHHHHhcCC----
Q psy12758 229 ---RDLD-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-----------MGFEPQ-IRCIVQENGM---- 288 (308)
Q Consensus 229 ---~~l~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-----------~~f~~~-l~~i~~~l~~---- 288 (308)
..+. .+++|+|+||++|.+.+.+-. . +++++||||||+|++ +||.++ ++.++..++.
T Consensus 169 ~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~ 245 (1171)
T TIGR01054 169 EFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL 245 (1171)
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc
Confidence 3333 359999999999998876522 2 899999999999998 788764 6665432210
Q ss_pred --------------CCCCCce--EEEEeec-CCCCC
Q psy12758 289 --------------PRTGDRQ--TLMFSAT-FPKEI 307 (308)
Q Consensus 289 --------------~~~~~~q--~i~~SAT-l~~~v 307 (308)
..+..+| +++|||| +|..+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~ 281 (1171)
T TIGR01054 246 YRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGK 281 (1171)
T ss_pred chHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcccc
Confidence 0123444 6779999 67653
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=2.2e-25 Score=224.91 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=133.8
Q ss_pred CCccC--CCCCHHHHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCC
Q psy12758 61 PQFDD--IQMTEIITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137 (308)
Q Consensus 61 ~~f~~--l~l~~~l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~ 137 (308)
..|.. +.....+...+++ .||..++|+|.++|++++.|+|+++++|||+|||+||++|++..-
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-------------- 500 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-------------- 500 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC--------------
Confidence 35775 4445566666654 799999999999999999999999999999999999999998521
Q ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEE
Q psy12758 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 217 (308)
Q Consensus 138 ~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~ 217 (308)
..+|||+|+++|+.+....+.. .+++...
T Consensus 501 -----------------------------------------------GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~ 529 (1195)
T PLN03137 501 -----------------------------------------------GITLVISPLVSLIQDQIMNLLQ----ANIPAAS 529 (1195)
T ss_pred -----------------------------------------------CcEEEEeCHHHHHHHHHHHHHh----CCCeEEE
Confidence 4589999999998744333333 3688888
Q ss_pred EecCCchhHhHHhhc------CCCeEEEECcHHHHH--HHHcCC---cCCCCCceEEechhhhcccCC--CHHHHHHHHH
Q psy12758 218 VYGGSNVGDQMRDLD------RGCHLLVATPGRLVD--MLERGK---IGLANCRFLVLDEADRMLDMG--FEPQIRCIVQ 284 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~------~~~~IlV~TP~~L~~--~l~~~~---~~l~~~~~lViDEad~ll~~~--f~~~l~~i~~ 284 (308)
+.++.....+...+. ..++|||+||++|.. .+.+.. .....+.+|||||||++++|| |.+.++.+-.
T Consensus 530 L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~ 609 (1195)
T PLN03137 530 LSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI 609 (1195)
T ss_pred EECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHH
Confidence 999988776654442 468999999999862 222211 123458899999999999998 7777766421
Q ss_pred hcCCCCCCCceEEEEeecCCCCC
Q psy12758 285 ENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 285 ~l~~~~~~~~q~i~~SATl~~~v 307 (308)
.... .++.|+++||||++..+
T Consensus 610 Lr~~--fp~vPilALTATAT~~V 630 (1195)
T PLN03137 610 LKQK--FPNIPVLALTATATASV 630 (1195)
T ss_pred HHHh--CCCCCeEEEEecCCHHH
Confidence 1111 23678999999998765
No 49
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=9.5e-26 Score=216.84 Aligned_cols=163 Identities=21% Similarity=0.281 Sum_probs=123.0
Q ss_pred HCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 78 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
..||.+|+|+|.++|+.+++|+|+++++|||||||++|++|++.. .
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---~------------------------------- 51 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---D------------------------------- 51 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---C-------------------------------
Confidence 479999999999999999999999999999999999999998742 1
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHH---hh-cC
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMR---DL-DR 233 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~ 233 (308)
..+||++|+++|+.|..+.+..+ ++....+.++....++.. .+ ..
T Consensus 52 ---------------------------~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~ 100 (470)
T TIGR00614 52 ---------------------------GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDG 100 (470)
T ss_pred ---------------------------CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 45788999999998887777653 577777777666543322 22 34
Q ss_pred CCeEEEECcHHHHHHH-HcCCc-CCCCCceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 234 GCHLLVATPGRLVDML-ERGKI-GLANCRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l-~~~~~-~l~~~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
.++|+++||+++.... ....+ ...++++|||||||+++++| |.+.+..+...... .++.|++++|||+++.+
T Consensus 101 ~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~--~~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 101 KIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK--FPNVPIMALTATASPSV 176 (470)
T ss_pred CCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH--cCCCceEEEecCCCHHH
Confidence 5899999999975321 00111 46789999999999999987 66666655322111 23678999999998753
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=1.5e-24 Score=229.54 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=119.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccc
Q psy12758 72 ITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLV 150 (308)
Q Consensus 72 l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li 150 (308)
+.+.+++ .|| +||++|+.+||.+++|+|++++||||||||++++++.+.... .
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-~------------------------ 121 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-K------------------------ 121 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-c------------------------
Confidence 3444555 799 699999999999999999999999999999966665554321 1
Q ss_pred cccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC--CCceEEEecCCchhHhH
Q psy12758 151 LAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS--QLRPCVVYGGSNVGDQM 228 (308)
Q Consensus 151 ~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~ 228 (308)
+.+++|++||++|+.|+.+.++.++... ++++..++|+.+...+.
T Consensus 122 ---------------------------------g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~ 168 (1638)
T PRK14701 122 ---------------------------------GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKE 168 (1638)
T ss_pred ---------------------------------CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHH
Confidence 1579999999999999999999998775 45667788998877654
Q ss_pred H---hhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-----------CCCHHHHHH
Q psy12758 229 R---DLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-----------MGFEPQIRC 281 (308)
Q Consensus 229 ~---~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-----------~~f~~~l~~ 281 (308)
. .+.+ .++|+|+||++|.+.+... . ..+++++||||||+|++ +||.+++..
T Consensus 169 ~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 169 EFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred HHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 3 3444 4999999999998876642 2 26799999999999987 589888864
No 51
>KOG0349|consensus
Probab=99.92 E-value=5.2e-26 Score=205.60 Aligned_cols=243 Identities=31% Similarity=0.471 Sum_probs=180.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhc------CCCCCC---
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYER------GPLPTP--- 132 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~------~~~~~~--- 132 (308)
-|+|+|+-+++-.+..++.+.-||.+|+++||.|+.|.|++..|.||||||-||.+|+++...+. +.+...
T Consensus 3 af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~~~ 82 (725)
T KOG0349|consen 3 AFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGGMA 82 (725)
T ss_pred chHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCccc
Confidence 59999999999999999999999999999999999999999999999999999999999987653 000000
Q ss_pred ------CC----CCCC----------------------------------------------------------------
Q psy12758 133 ------PA----GRGY---------------------------------------------------------------- 138 (308)
Q Consensus 133 ------~~----~~~~---------------------------------------------------------------- 138 (308)
+. .++.
T Consensus 83 ~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~~~ 162 (725)
T KOG0349|consen 83 DGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTGLD 162 (725)
T ss_pred CCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcccc
Confidence 00 0000
Q ss_pred -----------------------------------C------CC---------------CcccccccccccchHHHHHHH
Q psy12758 139 -----------------------------------P------SR---------------KKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 139 -----------------------------------~------~~---------------~~~~~~~li~~pt~~l~~q~~ 162 (308)
. +. ........+++-..||.....
T Consensus 163 gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fNFG 242 (725)
T KOG0349|consen 163 GFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFNFG 242 (725)
T ss_pred ccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEecC
Confidence 0 00 000011122333333433333
Q ss_pred HHHHHHHhhhcCCc----------------------cccccccccccccccCCHHhHHHHHHHHHHhhhcC---CCceEE
Q psy12758 163 DEAKKFAYRSQLRP----------------------CVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS---QLRPCV 217 (308)
Q Consensus 163 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~---~~~~~~ 217 (308)
+.--+|....++.. ......+.|.++|+-|+|||++|.++.++++.... .++..+
T Consensus 243 ~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lL 322 (725)
T KOG0349|consen 243 SQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLL 322 (725)
T ss_pred CCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhh
Confidence 32222211111100 01112345889999999999999999777776554 567778
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCC--Cce
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTG--DRQ 295 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~--~~q 295 (308)
+.||.....|...+.++.||+|+||+||.+++..+.+.+..+++||+||||.++..++.+.|.++..+++..... ..|
T Consensus 323 miggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq 402 (725)
T KOG0349|consen 323 MIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQ 402 (725)
T ss_pred hhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988655443 359
Q ss_pred EEEEeecCC
Q psy12758 296 TLMFSATFP 304 (308)
Q Consensus 296 ~i~~SATl~ 304 (308)
.+++|||+.
T Consensus 403 ~~vCsatlh 411 (725)
T KOG0349|consen 403 SPVCSATLH 411 (725)
T ss_pred cceeeeEEe
Confidence 999999974
No 52
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.7e-24 Score=214.63 Aligned_cols=149 Identities=18% Similarity=0.254 Sum_probs=133.1
Q ss_pred cCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q psy12758 64 DDIQMTEIITNNIA-----LARYDKP---TPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAG 135 (308)
Q Consensus 64 ~~l~l~~~l~~~L~-----~~~~~~p---t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~ 135 (308)
+.+++...+.+.+. .+||..| ||+|.++||.+..++|++++++||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 55788888888876 6899999 999999999999999999999999999999999999877532
Q ss_pred CCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCce
Q psy12758 136 RGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRP 215 (308)
Q Consensus 136 ~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~ 215 (308)
..++||+||++||.|+.+++..+.+..++++
T Consensus 136 -------------------------------------------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV 166 (970)
T PRK12899 136 -------------------------------------------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTT 166 (970)
T ss_pred -------------------------------------------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 2278899999999999999999999999999
Q ss_pred EEEecCCchhHhHHhhcCCCeEEEECcHHH-HHHHHcCCcCCC-------CCceEEechhhhccc
Q psy12758 216 CVVYGGSNVGDQMRDLDRGCHLLVATPGRL-VDMLERGKIGLA-------NCRFLVLDEADRMLD 272 (308)
Q Consensus 216 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~~~~l~-------~~~~lViDEad~ll~ 272 (308)
.+++||.+...+...+ +|||+||||++| .++++.+.+.++ .++++||||||.|+-
T Consensus 167 ~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 167 GVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred EEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 9999999998887665 599999999999 999998876665 568999999999983
No 53
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=216.82 Aligned_cols=180 Identities=23% Similarity=0.277 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccc
Q psy12758 68 MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 147 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
....+..+|.+.|+..++.+|.+|+..+.+|+|+||+++||||||++|++||++.++..+. -+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~-----------------a~ 117 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS-----------------AR 117 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC-----------------cc
Confidence 3445688899999999999999999999999999999999999999999999999988753 14
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCC--CceEEEecCCchh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQ--LRPCVVYGGSNVG 225 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~--~~~~~~~gg~~~~ 225 (308)
+|+++|||+|+++|.+++++ +....+ ++.....|.+...
T Consensus 118 AL~lYPtnALa~DQ~~rl~~---------------------------------------~~~~~~~~v~~~~y~Gdt~~~ 158 (851)
T COG1205 118 ALLLYPTNALANDQAERLRE---------------------------------------LISDLPGKVTFGRYTGDTPPE 158 (851)
T ss_pred EEEEechhhhHhhHHHHHHH---------------------------------------HHHhCCCcceeeeecCCCChH
Confidence 45555555555555555554 444443 5666666767666
Q ss_pred HhHHhhcCCCeEEEECcHHHHHHHHcCC----cCCCCCceEEechhhhcccCCCHHHHHHHHH----hcCCCCCCCceEE
Q psy12758 226 DQMRDLDRGCHLLVATPGRLVDMLERGK----IGLANCRFLVLDEADRMLDMGFEPQIRCIVQ----ENGMPRTGDRQTL 297 (308)
Q Consensus 226 ~~~~~l~~~~~IlV~TP~~L~~~l~~~~----~~l~~~~~lViDEad~ll~~~f~~~l~~i~~----~l~~~~~~~~q~i 297 (308)
.......+.+|||++||.+|..++-+.. +.+++++|||+||+|.. ...|+.++-.+++ .+... +.+.|+|
T Consensus 159 ~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~~-~~~~q~i 236 (851)
T COG1205 159 ERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRRY-GSPLQII 236 (851)
T ss_pred HHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhcc-CCCceEE
Confidence 6667778899999999999988654332 44788999999999965 4446665554444 44333 3578999
Q ss_pred EEeecCCC
Q psy12758 298 MFSATFPK 305 (308)
Q Consensus 298 ~~SATl~~ 305 (308)
+.|||+..
T Consensus 237 ~~SAT~~n 244 (851)
T COG1205 237 CTSATLAN 244 (851)
T ss_pred EEeccccC
Confidence 99999865
No 54
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=4e-24 Score=211.06 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=129.2
Q ss_pred HHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccc
Q psy12758 74 NNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 152 (308)
Q Consensus 74 ~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (308)
+.|++ .||.+++++|.++|+.+++|+|+++++|||+|||++|++|++.. .
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-------------------------- 53 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-------------------------- 53 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C--------------------------
Confidence 34544 79999999999999999999999999999999999999998742 1
Q ss_pred cchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh--
Q psy12758 153 PTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD-- 230 (308)
Q Consensus 153 pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-- 230 (308)
..++|++|+++|+.|..+.++.+ ++.+..+.++.+.......
T Consensus 54 --------------------------------g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~ 97 (591)
T TIGR01389 54 --------------------------------GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEK 97 (591)
T ss_pred --------------------------------CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH
Confidence 34788999999998888877764 5777788888776554332
Q ss_pred -h-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 231 -L-DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 231 -l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
+ ....+|+++||++|........+...++++|||||||++.++| |.+.+..+....... ++.+++++|||.+..
T Consensus 98 ~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~--~~~~vi~lTAT~~~~ 175 (591)
T TIGR01389 98 ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF--PQVPRIALTATADAE 175 (591)
T ss_pred HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC--CCCCEEEEEeCCCHH
Confidence 2 3568999999999965433334456789999999999999987 777776664432111 244599999999875
Q ss_pred C
Q psy12758 307 I 307 (308)
Q Consensus 307 v 307 (308)
+
T Consensus 176 ~ 176 (591)
T TIGR01389 176 T 176 (591)
T ss_pred H
Confidence 4
No 55
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=6.4e-24 Score=209.67 Aligned_cols=169 Identities=22% Similarity=0.249 Sum_probs=124.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccc
Q psy12758 72 ITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLV 150 (308)
Q Consensus 72 l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li 150 (308)
..+.|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~------------------------ 65 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D------------------------ 65 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C------------------------
Confidence 3444443 79999999999999999999999999999999999999998853 1
Q ss_pred cccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh
Q psy12758 151 LAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD 230 (308)
Q Consensus 151 ~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 230 (308)
..+||++|+++|+.|..+.++.+ ++...++.++.........
T Consensus 66 ----------------------------------g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~ 107 (607)
T PRK11057 66 ----------------------------------GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEV 107 (607)
T ss_pred ----------------------------------CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHH
Confidence 34788889999988887777654 5666667666655443322
Q ss_pred ---h-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 231 ---L-DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 231 ---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+ ....+++++||++|........+...+++++||||||++.++| |.+.+..+-..... -++.|++++|||.+
T Consensus 108 ~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~--~p~~~~v~lTAT~~ 185 (607)
T PRK11057 108 MAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR--FPTLPFMALTATAD 185 (607)
T ss_pred HHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh--CCCCcEEEEecCCC
Confidence 2 2357899999999874221122334678999999999999987 66666554221111 23678999999998
Q ss_pred CCC
Q psy12758 305 KEI 307 (308)
Q Consensus 305 ~~v 307 (308)
+.+
T Consensus 186 ~~~ 188 (607)
T PRK11057 186 DTT 188 (607)
T ss_pred hhH
Confidence 754
No 56
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=2.7e-23 Score=211.22 Aligned_cols=165 Identities=21% Similarity=0.220 Sum_probs=130.0
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHhhHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 68 MTEIITNNIAL-ARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 68 l~~~l~~~L~~-~~~~~pt~iQ~~~ip~i~~g------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+..+++.+.+ .+| +||++|.+||+.+.++ +|.+++|+||||||++|++|++..+...
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------------- 500 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------------- 500 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC--------------
Confidence 34555666554 688 5999999999999975 7999999999999999999998876432
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.+++|++||++||.|+++.++.+....++++..++|
T Consensus 501 --------------------------------------------~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg 536 (926)
T TIGR00580 501 --------------------------------------------KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSR 536 (926)
T ss_pred --------------------------------------------CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEec
Confidence 679999999999999999999998888899999988
Q ss_pred CCchhHhH---HhhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 221 GSNVGDQM---RDLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 221 g~~~~~~~---~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
+.....+. ..+.. .++|+||||. ++ .+.+.++++++|||||+|++ +...+..+..+ ..+.|+
T Consensus 537 ~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~----~~~~~v 602 (926)
T TIGR00580 537 FRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKEL----RTSVDV 602 (926)
T ss_pred cccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcccCCEEEeeccccc-----chhHHHHHHhc----CCCCCE
Confidence 87654433 33434 5899999994 23 34567899999999999985 23344445544 357899
Q ss_pred EEEeecCCC
Q psy12758 297 LMFSATFPK 305 (308)
Q Consensus 297 i~~SATl~~ 305 (308)
++||||.++
T Consensus 603 L~~SATpip 611 (926)
T TIGR00580 603 LTLSATPIP 611 (926)
T ss_pred EEEecCCCH
Confidence 999999643
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=6.7e-23 Score=203.28 Aligned_cols=163 Identities=21% Similarity=0.242 Sum_probs=127.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHhhHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy12758 72 ITNNIALARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVF 145 (308)
Q Consensus 72 l~~~L~~~~~~~pt~iQ~~~ip~i~~g------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~ 145 (308)
+.+.+...+| +||++|.+||+.+.++ .+.+++|+||||||++|++|++..+...
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g------------------- 284 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG------------------- 284 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------------------
Confidence 4455677899 7999999999999976 2689999999999999999999876322
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVG 225 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 225 (308)
.+++|++||++||.|+++.++++....++++.+++|+....
T Consensus 285 ---------------------------------------~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~ 325 (630)
T TIGR00643 285 ---------------------------------------YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGK 325 (630)
T ss_pred ---------------------------------------CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHH
Confidence 67999999999999999999999988899999999998766
Q ss_pred Hh---HHhhc-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 226 DQ---MRDLD-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 226 ~~---~~~l~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.. ...+. ..++|+||||+.+.+ .+.++++.++||||+|++.. .+-..+...... ...+|+++|||
T Consensus 326 ~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~----~qr~~l~~~~~~--~~~~~~l~~SA 394 (630)
T TIGR00643 326 RRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV----EQRKKLREKGQG--GFTPHVLVMSA 394 (630)
T ss_pred HHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH----HHHHHHHHhccc--CCCCCEEEEeC
Confidence 53 33343 358999999987753 35578999999999998632 222233333210 12578999999
Q ss_pred cCC
Q psy12758 302 TFP 304 (308)
Q Consensus 302 Tl~ 304 (308)
|..
T Consensus 395 Tp~ 397 (630)
T TIGR00643 395 TPI 397 (630)
T ss_pred CCC
Confidence 953
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=5.1e-23 Score=213.26 Aligned_cols=163 Identities=23% Similarity=0.250 Sum_probs=129.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHhhHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy12758 70 EIITNNIALARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKK 143 (308)
Q Consensus 70 ~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~ 143 (308)
....+.....+| .||++|.+||+.++++ +|++++|+||+|||.+|+.+++..+...
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g----------------- 649 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH----------------- 649 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-----------------
Confidence 344555677788 7999999999999987 8999999999999999998887654221
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCc
Q psy12758 144 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSN 223 (308)
Q Consensus 144 ~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~ 223 (308)
.+++|++||++||.|+++.+++.....++++.+++|+.+
T Consensus 650 -----------------------------------------~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s 688 (1147)
T PRK10689 650 -----------------------------------------KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRS 688 (1147)
T ss_pred -----------------------------------------CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 679999999999999999999887777888888998888
Q ss_pred hhHhHHhh---c-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 224 VGDQMRDL---D-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 224 ~~~~~~~l---~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
...+...+ . ..++|+||||+.+ . ..+.++++++|||||+|++ |+. + ...+..+ +.++|+++|
T Consensus 689 ~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf---G~~-~-~e~lk~l----~~~~qvLl~ 754 (1147)
T PRK10689 689 AKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF---GVR-H-KERIKAM----RADVDILTL 754 (1147)
T ss_pred HHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc---chh-H-HHHHHhc----CCCCcEEEE
Confidence 77665543 2 4689999999643 2 4456789999999999997 332 2 3334444 457899999
Q ss_pred eecCCC
Q psy12758 300 SATFPK 305 (308)
Q Consensus 300 SATl~~ 305 (308)
|||.++
T Consensus 755 SATpip 760 (1147)
T PRK10689 755 TATPIP 760 (1147)
T ss_pred cCCCCH
Confidence 999654
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=7.7e-23 Score=204.20 Aligned_cols=162 Identities=20% Similarity=0.278 Sum_probs=127.8
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHhhHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy12758 70 EIITNNI-ALARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRK 142 (308)
Q Consensus 70 ~~l~~~L-~~~~~~~pt~iQ~~~ip~i~~g------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~ 142 (308)
..+.+.+ ..++| +||++|.++|+.+.++ .|.+++|+||||||++|++|+++.+.+.
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---------------- 310 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---------------- 310 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC----------------
Confidence 3444444 45677 6999999999999987 4899999999999999999999876422
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCC
Q psy12758 143 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGS 222 (308)
Q Consensus 143 ~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 222 (308)
.+++|++||++||.|+++.++.+....++++.+++|+.
T Consensus 311 ------------------------------------------~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~ 348 (681)
T PRK10917 311 ------------------------------------------YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSL 348 (681)
T ss_pred ------------------------------------------CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCC
Confidence 67999999999999999999999999999999999998
Q ss_pred chhHhH---HhhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 223 NVGDQM---RDLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 223 ~~~~~~---~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
...... ..+.. .++|+||||+++.+ .+.+++++++||||+|++. ...+..+... ...+++++
T Consensus 349 ~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg-----~~qr~~l~~~----~~~~~iL~ 414 (681)
T PRK10917 349 KGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG-----VEQRLALREK----GENPHVLV 414 (681)
T ss_pred CHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh-----HHHHHHHHhc----CCCCCEEE
Confidence 864443 34444 59999999987743 3458899999999999863 2223333332 33578999
Q ss_pred EeecCC
Q psy12758 299 FSATFP 304 (308)
Q Consensus 299 ~SATl~ 304 (308)
||||..
T Consensus 415 ~SATp~ 420 (681)
T PRK10917 415 MTATPI 420 (681)
T ss_pred EeCCCC
Confidence 999953
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=207.57 Aligned_cols=177 Identities=23% Similarity=0.274 Sum_probs=149.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHhhHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy12758 67 QMTEIITNNIALARYDKPTPVQKYAIPVII-SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVF 145 (308)
Q Consensus 67 ~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~-~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~ 145 (308)
.+++.+.+-++..++....+-|+.++.... +++|+++++|||||||+.+++.+++.+.+.+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------------ 76 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG------------------ 76 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------------
Confidence 467788888888888888888888886644 5699999999999999999999999987652
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVG 225 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 225 (308)
.++++++|+++||.+.+++++ .....|+++....|+....
T Consensus 77 ---------------------------------------~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~ 116 (766)
T COG1204 77 ---------------------------------------GKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLD 116 (766)
T ss_pred ---------------------------------------CcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccc
Confidence 568999999999999999999 5556799999999998755
Q ss_pred HhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 226 DQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 226 ~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
.. . ..+++|+|+||+++..++.+....+..+++|||||+|.+.|...+..++.|+.+.... ....|++.+|||+|+
T Consensus 117 ~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~-~~~~rivgLSATlpN 192 (766)
T COG1204 117 DE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL-NELIRIVGLSATLPN 192 (766)
T ss_pred hh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhh-CcceEEEEEeeecCC
Confidence 42 1 2368999999999999999888788999999999999888887888899998877443 234799999999997
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=2e-23 Score=217.93 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=115.6
Q ss_pred EEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccc
Q psy12758 103 ACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182 (308)
Q Consensus 103 v~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 182 (308)
|+||||||||+||++|+|+.++........ . .. ..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~--~----~~---------------------------------------~~ 35 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTR--E----AH---------------------------------------KR 35 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccccc--c----cc---------------------------------------cC
Confidence 579999999999999999999865310000 0 00 00
Q ss_pred cccccccccCCHHhHHHHHHHHHHh-----------h-hcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHH
Q psy12758 183 VFPLGLVLAPTRELATQIYDEAKKF-----------A-YRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLE 250 (308)
Q Consensus 183 ~~~~~lil~PtreL~~qi~~~~~~~-----------~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 250 (308)
.+.++|||+|+++|+.|+++.++.. + ...++++...+|+++..++.+.+.+.+||||+||++|..++.
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLt 115 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLT 115 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHh
Confidence 1145666666666666666665431 1 124688889999999988888888899999999999999886
Q ss_pred cCC-cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 251 RGK-IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 251 ~~~-~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
++. ..++++++|||||+|.|++..++.++..+++++....+.+.|+|++|||+++
T Consensus 116 sk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n 171 (1490)
T PRK09751 116 SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS 171 (1490)
T ss_pred hhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC
Confidence 543 4689999999999999998766666655555554333557899999999976
No 62
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=2e-21 Score=163.84 Aligned_cols=169 Identities=42% Similarity=0.601 Sum_probs=139.3
Q ss_pred HCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 78 LARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
..++.+|+++|.+++..+..+ +++++.++||+|||.++..+++..+.....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~---------------------------- 54 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKG---------------------------- 54 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCC----------------------------
Confidence 457889999999999999999 999999999999999999999887654321
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCC-
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGC- 235 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~- 235 (308)
..++|++|++.++.|+.+.+..+...........+++.........+..+.
T Consensus 55 ----------------------------~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (201)
T smart00487 55 ----------------------------KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKT 106 (201)
T ss_pred ----------------------------CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCC
Confidence 458889999999999888888877665545555666666555566565555
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
+|+++|++.+.+.+.........++++|+||+|.+....+...+..++..+ ....+++++|||.+++
T Consensus 107 ~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~----~~~~~~v~~saT~~~~ 173 (201)
T smart00487 107 DILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL----PKNVQLLLLSATPPEE 173 (201)
T ss_pred CEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC----CccceEEEEecCCchh
Confidence 999999999999998877777889999999999998767888888888876 4578899999999764
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=182.54 Aligned_cols=186 Identities=21% Similarity=0.272 Sum_probs=160.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
...++|.+|+.+.+-|+..||+...|+|..|+.. +++|.|+++.++|+||||+..-++-+..++..+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g------------ 261 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG------------ 261 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC------------
Confidence 5689999999999999999999999999999988 779999999999999999999999998887754
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.+.|+++|..+||+|.++.|+......++.+.+-+
T Consensus 262 ---------------------------------------------~KmlfLvPLVALANQKy~dF~~rYs~LglkvairV 296 (830)
T COG1202 262 ---------------------------------------------KKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRV 296 (830)
T ss_pred ---------------------------------------------CeEEEEehhHHhhcchHHHHHHHhhcccceEEEEe
Confidence 56899999999999999999999999999988877
Q ss_pred cCCchhHhHH----hhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCce
Q psy12758 220 GGSNVGDQMR----DLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQ 295 (308)
Q Consensus 220 gg~~~~~~~~----~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q 295 (308)
|-........ .-...+||||||.+-+..+|..+ -.+.++..+||||+|.+-|...+..+.-++.+++... ++.|
T Consensus 297 G~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~-~~AQ 374 (830)
T COG1202 297 GMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF-PGAQ 374 (830)
T ss_pred chhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC-CCCe
Confidence 7655444321 11235799999999999999887 5589999999999998888778888888888876654 4799
Q ss_pred EEEEeecCCC
Q psy12758 296 TLMFSATFPK 305 (308)
Q Consensus 296 ~i~~SATl~~ 305 (308)
+|.+|||+-+
T Consensus 375 ~i~LSATVgN 384 (830)
T COG1202 375 FIYLSATVGN 384 (830)
T ss_pred EEEEEeecCC
Confidence 9999999843
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=5.6e-21 Score=184.99 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=115.1
Q ss_pred CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHH
Q psy12758 81 YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q 160 (308)
...|+++|.++++.++.+++.++++|||+|||+++... ...+....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~--------------------------------- 157 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY--------------------------------- 157 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC---------------------------------
Confidence 45899999999999999999999999999999976542 22222221
Q ss_pred HHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEE
Q psy12758 161 IYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVA 240 (308)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~ 240 (308)
..++||++||++|+.|+.+.++++.......+..+++|.... .+.+|+|+
T Consensus 158 -----------------------~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~Va 207 (501)
T PHA02558 158 -----------------------EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVS 207 (501)
T ss_pred -----------------------CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEe
Confidence 146899999999999999999988765555555677765432 34789999
Q ss_pred CcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 241 TPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 241 TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
||+++..... ..++++++||+||||++... .+..++..+ ++.+|+++||||.++.
T Consensus 208 T~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~----~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 208 TWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKL----DNCKFKFGLTGSLRDG 262 (501)
T ss_pred eHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhh----hccceEEEEeccCCCc
Confidence 9999876432 24688999999999999764 456666665 3467899999998753
No 65
>KOG0952|consensus
Probab=99.85 E-value=2e-21 Score=191.38 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=139.0
Q ss_pred HCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 78 LARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
-.+|+....+|..++|.+... .|.+||||||+|||..|++.||+.+.+....
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~--------------------------- 157 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ--------------------------- 157 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc---------------------------
Confidence 357889999999999998865 7999999999999999999999988763210
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCe
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 236 (308)
....+...++++++|+++||.++.+.+.+-....|+++..+.|+....... ...++
T Consensus 158 ---------------------~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tq 213 (1230)
T KOG0952|consen 158 ---------------------GDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQ 213 (1230)
T ss_pred ---------------------cccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcC
Confidence 112233377999999999999999999988888899999999988765433 23589
Q ss_pred EEEECcHHHHHHHHcCC---cCCCCCceEEechhhhcccCCCHHHHHHHHHhcC---CCCCCCceEEEEeecCCCC
Q psy12758 237 LLVATPGRLVDMLERGK---IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENG---MPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~---~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~---~~~~~~~q~i~~SATl~~~ 306 (308)
|||+||+++.-..++.. -.++.+++|||||+|.+ ...+++-++.|+.+.. .......+++++|||+|+-
T Consensus 214 iiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~ 288 (1230)
T KOG0952|consen 214 IIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY 288 (1230)
T ss_pred EEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH
Confidence 99999999854444332 22678999999999955 5558889999988753 1223467899999999973
No 66
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.85 E-value=6.1e-21 Score=188.21 Aligned_cols=158 Identities=17% Similarity=0.131 Sum_probs=115.2
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchhHH---------hHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKTAA---------FLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla---------~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
..+|.++++.+++|+|++++|+||||||.+ |++|.+..+..-..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~--------------------------- 218 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP--------------------------- 218 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---------------------------
Confidence 368999999999999999999999999997 55566554421100
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhc---CCCceEEEecCCchhHhHHhhc
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYR---SQLRPCVVYGGSNVGDQMRDLD 232 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~ 232 (308)
.....+++|++||||||.|+...+.+.... .+..+.+.+||... .+.....
T Consensus 219 -------------------------~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~ 272 (675)
T PHA02653 219 -------------------------NFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNP 272 (675)
T ss_pred -------------------------ccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhccc
Confidence 001256899999999999999888776544 35667888999873 2223333
Q ss_pred CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 233 RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 233 ~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
++.+|+|+|++. ....++++++|||||||.+...+ +.+..++..+. +..+|+++||||+|+++
T Consensus 273 k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~---~~~rq~ILmSATl~~dv 335 (675)
T PHA02653 273 KPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHI---DKIRSLFLMTATLEDDR 335 (675)
T ss_pred CCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHHHHhh---hhcCEEEEEccCCcHhH
Confidence 468999999752 11247899999999999998875 55666665431 23469999999998754
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.81 E-value=4.1e-19 Score=179.05 Aligned_cols=149 Identities=22% Similarity=0.190 Sum_probs=111.7
Q ss_pred HHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 89 KYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 89 ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.+.+..+.+++++|++|+||||||.+|.+++++....
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~------------------------------------------- 44 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI------------------------------------------- 44 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------------------------------------
Confidence 4556667778999999999999999999999876411
Q ss_pred HhhhcCCccccccccccccccccCCHHhHHHHHHHHH-HhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHH
Q psy12758 169 AYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAK-KFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVD 247 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ 247 (308)
..+++|+.|+|++|.|+++.+. .+....+..+...+++.+ ......+|+|+|||+|+.
T Consensus 45 ---------------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr 103 (819)
T TIGR01970 45 ---------------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTR 103 (819)
T ss_pred ---------------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHH
Confidence 1568999999999999998874 444444555544444322 223457899999999999
Q ss_pred HHHcCCcCCCCCceEEechhh-hcccCCCHHH-HHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 248 MLERGKIGLANCRFLVLDEAD-RMLDMGFEPQ-IRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 248 ~l~~~~~~l~~~~~lViDEad-~ll~~~f~~~-l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
++.+. ..++++++|||||+| ++++.+|.-. +..+...+ +.+.|+|+||||++.+
T Consensus 104 ~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l----r~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 104 MIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL----REDLKILAMSATLDGE 159 (819)
T ss_pred HHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc----CCCceEEEEeCCCCHH
Confidence 98864 468999999999999 5888776543 34455444 4578999999999853
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.80 E-value=3.9e-19 Score=179.42 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=110.4
Q ss_pred HHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 89 KYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 89 ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.+.+..+.++++++++|+||||||++|.+++++....
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~------------------------------------------- 47 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI------------------------------------------- 47 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------------------------------------------
Confidence 3555667788999999999999999999998864210
Q ss_pred HhhhcCCccccccccccccccccCCHHhHHHHHHHHH-HhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHH
Q psy12758 169 AYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAK-KFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVD 247 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ 247 (308)
..+++|+.|||++|.|+++.+. .+....+..+...+++.+.. ....+|+|+|||+|++
T Consensus 48 ---------------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr 106 (812)
T PRK11664 48 ---------------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTR 106 (812)
T ss_pred ---------------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHH
Confidence 0468999999999999988874 45555566666655554322 2345799999999999
Q ss_pred HHHcCCcCCCCCceEEechhhh-cccCCCH-HHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 248 MLERGKIGLANCRFLVLDEADR-MLDMGFE-PQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 248 ~l~~~~~~l~~~~~lViDEad~-ll~~~f~-~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
++... ..++++++|||||+|. .++.++. ..+..++..+ +.+.|+++||||++.+
T Consensus 107 ~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l----r~~lqlilmSATl~~~ 162 (812)
T PRK11664 107 MIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL----RDDLKLLIMSATLDND 162 (812)
T ss_pred HHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC----CccceEEEEecCCCHH
Confidence 98864 4689999999999996 5655432 2334455544 4578999999999753
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=8.3e-20 Score=169.93 Aligned_cols=144 Identities=22% Similarity=0.180 Sum_probs=94.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCcccc
Q psy12758 100 DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 179 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~ 179 (308)
|+++.||||||||++|++|++..+.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~--------------------------------------------------- 29 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKA--------------------------------------------------- 29 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCC---------------------------------------------------
Confidence 68999999999999999999987643321
Q ss_pred ccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCch------------hHhHHhh------cCCCeEEEEC
Q psy12758 180 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNV------------GDQMRDL------DRGCHLLVAT 241 (308)
Q Consensus 180 ~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~------------~~~~~~l------~~~~~IlV~T 241 (308)
.+++|++|+++|+.|+++.++.++.. ....++|+... ....... ....+|+|+|
T Consensus 30 -----~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 101 (358)
T TIGR01587 30 -----DRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCT 101 (358)
T ss_pred -----CeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCC
Confidence 45667777777777777766665321 22223332211 0000011 1236799999
Q ss_pred cHHHHHHHHcCC----cCCC--CCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 242 PGRLVDMLERGK----IGLA--NCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 242 P~~L~~~l~~~~----~~l~--~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
|+++...+.... ..+. ..+++||||||.+.+.++.. +..++..+. ..+.|+++||||+|+.
T Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~---~~~~~~i~~SATlp~~ 168 (358)
T TIGR01587 102 IDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK---DNDVPILLMSATLPKF 168 (358)
T ss_pred HHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH---HcCCCEEEEecCchHH
Confidence 999988776521 1111 23789999999999876544 666666553 2468999999999864
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.79 E-value=4e-19 Score=174.45 Aligned_cols=131 Identities=20% Similarity=0.199 Sum_probs=112.4
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|..+.+.+..|+ +++++||+|||++|.+|++...+..
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-------------------------------- 97 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG-------------------------------- 97 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC--------------------------------
Confidence 454 79999999999998887 9999999999999999996444322
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+.|++||++||.|.++++..+....++++.+++||.+...+.... .+||+
T Consensus 98 --------------------------~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIv 149 (745)
T TIGR00963 98 --------------------------KGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDIT 149 (745)
T ss_pred --------------------------CCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEE
Confidence 34889999999999999999999999999999999998875544443 58999
Q ss_pred EECcHHH-HHHHHcC------CcCCCCCceEEechhhhccc
Q psy12758 239 VATPGRL-VDMLERG------KIGLANCRFLVLDEADRMLD 272 (308)
Q Consensus 239 V~TP~~L-~~~l~~~------~~~l~~~~~lViDEad~ll~ 272 (308)
||||++| .+++..+ .+.++.+.++||||+|.|+-
T Consensus 150 yGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 150 YGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred EECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999 9999776 34578999999999999974
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.79 E-value=1.6e-18 Score=176.55 Aligned_cols=161 Identities=24% Similarity=0.264 Sum_probs=124.8
Q ss_pred CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 80 RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
+..+|+++|.+++..++.+ |+++++|||+|||+++++++...+....
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~-------------------------------- 58 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKG-------------------------------- 58 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCC--------------------------------
Confidence 4558999999999888887 9999999999999999999887763111
Q ss_pred HHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEE
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLV 239 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV 239 (308)
.++||++||++|+.|..+.++.+......++..+.|+..... ...+..+++|+|
T Consensus 59 -------------------------~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv 112 (773)
T PRK13766 59 -------------------------GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIV 112 (773)
T ss_pred -------------------------CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEE
Confidence 568999999999999999998876544456777777776554 334455689999
Q ss_pred ECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 240 ATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 240 ~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+||+.+...+..+.+.+.++++|||||||++........+...+... ....++++||||-
T Consensus 113 ~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~----~~~~~il~lTaTP 172 (773)
T PRK13766 113 ATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED----AKNPLVLGLTASP 172 (773)
T ss_pred ECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc----CCCCEEEEEEcCC
Confidence 99999988887788888999999999999987653333333332221 2356799999995
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.79 E-value=1.3e-18 Score=161.63 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=96.2
Q ss_pred HHHHHHhhHhcCCC--EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHH
Q psy12758 87 VQKYAIPVIISGRD--VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDE 164 (308)
Q Consensus 87 iQ~~~ip~i~~g~d--~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~ 164 (308)
+|.++++.+.++.+ ++++||||||||++|++|++.. . .++++++|+++|+.|+++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~------------------~~~~~~~P~~aL~~~~~~~ 58 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----E------------------NDTIALYPTNALIEDQTEA 58 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----C------------------CCEEEEeChHHHHHHHHHH
Confidence 59999999999974 7899999999999999998841 1 1345555555555555555
Q ss_pred HHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCC------------------chhH
Q psy12758 165 AKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGS------------------NVGD 226 (308)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~------------------~~~~ 226 (308)
++++..... ...+..+..+.|.+ ....
T Consensus 59 ~~~~~~~~~-----------------------------------~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~ 103 (357)
T TIGR03158 59 IKEFVDVFK-----------------------------------PERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYN 103 (357)
T ss_pred HHHHHHhcC-----------------------------------CCCCceEEEecCCchHHHHHhhhhhcccCccchhhh
Confidence 554421110 00122222222221 0001
Q ss_pred h--HHhhcCCCeEEEECcHHHHHHHHcCC-----c---CCCCCceEEechhhhcccCCCH-----HHHHHHHHhcCCCCC
Q psy12758 227 Q--MRDLDRGCHLLVATPGRLVDMLERGK-----I---GLANCRFLVLDEADRMLDMGFE-----PQIRCIVQENGMPRT 291 (308)
Q Consensus 227 ~--~~~l~~~~~IlV~TP~~L~~~l~~~~-----~---~l~~~~~lViDEad~ll~~~f~-----~~l~~i~~~l~~~~~ 291 (308)
. .......++|+++||+.|..++.+.. . .+.+++++||||+|.+-..+.. -....++... .
T Consensus 104 ~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~----~ 179 (357)
T TIGR03158 104 LLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF----E 179 (357)
T ss_pred hHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh----h
Confidence 0 11123468999999999987765421 1 2578999999999987643321 1222333322 2
Q ss_pred CCceEEEEeecCCCC
Q psy12758 292 GDRQTLMFSATFPKE 306 (308)
Q Consensus 292 ~~~q~i~~SATl~~~ 306 (308)
...+++++|||+|+.
T Consensus 180 ~~~~~i~lSAT~~~~ 194 (357)
T TIGR03158 180 CRRKFVFLSATPDPA 194 (357)
T ss_pred cCCcEEEEecCCCHH
Confidence 246999999999865
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.78 E-value=5.9e-18 Score=168.83 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=114.4
Q ss_pred CCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 83 KPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
.+|+.|++++..+.++ +++++.++||||||.+|+.++...+...
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g--------------------------------- 190 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG--------------------------------- 190 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---------------------------------
Confidence 5899999999999984 7999999999999999998877665322
Q ss_pred HHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh---h-cCCC
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD---L-DRGC 235 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~ 235 (308)
.++||++||++|+.|+.+.+++.. +.++..++|+.+..++.+. + ...+
T Consensus 191 -------------------------~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 191 -------------------------KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEA 242 (679)
T ss_pred -------------------------CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 569999999999999999888753 5678889999876554332 2 3468
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCC---HHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGF---EPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f---~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
+|+|||++.+. ..+++++++||||+|.....+. ....+.+..... ...+.|++++|||.+.
T Consensus 243 ~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra--~~~~~~~il~SATps~ 306 (679)
T PRK05580 243 KVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA--KLENIPVVLGSATPSL 306 (679)
T ss_pred CEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh--hccCCCEEEEcCCCCH
Confidence 99999998763 4478999999999997653321 111222221111 1347899999999653
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=7.2e-19 Score=171.57 Aligned_cols=127 Identities=24% Similarity=0.207 Sum_probs=109.1
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|+++|..++|.++.|+ |++++||+|||++|.+|++......
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G------------------------------------ 144 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG------------------------------------ 144 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC------------------------------------
Confidence 89999999999999999 9999999999999999999865432
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
+.++|++||++||.|.++++..+....++++.+++||.+. +.+.+..+|||+|||.
T Consensus 145 ----------------------~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~ 200 (656)
T PRK12898 145 ----------------------LPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSP--DERRAAYGADITYCTN 200 (656)
T ss_pred ----------------------CeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECC
Confidence 6799999999999999999999999999999999999764 3455567899999999
Q ss_pred HHH-HHHHHcCCc-------------------------CCCCCceEEechhhhcc
Q psy12758 243 GRL-VDMLERGKI-------------------------GLANCRFLVLDEADRML 271 (308)
Q Consensus 243 ~~L-~~~l~~~~~-------------------------~l~~~~~lViDEad~ll 271 (308)
..| .++|..+.. ....+.+.||||||.++
T Consensus 201 ~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 201 KELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred CchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 998 666654321 13567899999999886
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.4e-18 Score=172.79 Aligned_cols=131 Identities=20% Similarity=0.194 Sum_probs=111.6
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|..+++.+..|+ |++++||+|||++|++|++...+..
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-------------------------------- 119 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-------------------------------- 119 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC--------------------------------
Confidence 466 89999999999999887 9999999999999999998665433
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
+.++|++||++||.|.++.+..+....++++.++.||.+...+.+. ..++||+
T Consensus 120 --------------------------~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIv 172 (790)
T PRK09200 120 --------------------------KGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADII 172 (790)
T ss_pred --------------------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEE
Confidence 5699999999999999999999999999999999999884333333 3569999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
+|||++| .++|.... ..++.+.++||||||.|+
T Consensus 173 ygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 173 YTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred EECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999 66665432 346889999999999987
No 76
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=3.6e-17 Score=129.97 Aligned_cols=144 Identities=42% Similarity=0.530 Sum_probs=110.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccc
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 178 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~ 178 (308)
+++++.++||+|||..++..+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~--------------------------------------------------- 29 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK--------------------------------------------------- 29 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---------------------------------------------------
Confidence 47899999999999999888887654321
Q ss_pred cccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCC
Q psy12758 179 VRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLAN 258 (308)
Q Consensus 179 ~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~ 258 (308)
..+++|++|++.++.|..+.+...... +..+..+.++..............+|+++|++.+...+.........
T Consensus 30 -----~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~ 103 (144)
T cd00046 30 -----GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKK 103 (144)
T ss_pred -----CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhc
Confidence 156889999999999998888887765 67777777776666655555678999999999998888776655678
Q ss_pred CceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 259 CRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 259 ~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
.+++||||+|.+....+........... ....+++++|||.
T Consensus 104 ~~~iiiDE~h~~~~~~~~~~~~~~~~~~----~~~~~~i~~saTp 144 (144)
T cd00046 104 LDLLILDEAHRLLNQGFGLLGLKILLKL----PKDRQVLLLSATP 144 (144)
T ss_pred CCEEEEeCHHHHhhcchHHHHHHHHhhC----CccceEEEEeccC
Confidence 8999999999998776544321122211 4467899999995
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=6.4e-18 Score=166.91 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=104.6
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|......+..| .+++++||+|||++|++|++...+..
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g-------------------------------- 111 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTG-------------------------------- 111 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcC--------------------------------
Confidence 455 6777776666666555 69999999999999999987655432
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCc---hhHhHHhhcCCC
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSN---VGDQMRDLDRGC 235 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~---~~~~~~~l~~~~ 235 (308)
+.++|++|+++||.|.++++..+.+..++.+.+++++.. .....+....+|
T Consensus 112 --------------------------~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~ 165 (762)
T TIGR03714 112 --------------------------KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNS 165 (762)
T ss_pred --------------------------CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCC
Confidence 458999999999999999999999999999988877632 333344455689
Q ss_pred eEEEECcHHH-HHHHHcC------CcCCCCCceEEechhhhccc
Q psy12758 236 HLLVATPGRL-VDMLERG------KIGLANCRFLVLDEADRMLD 272 (308)
Q Consensus 236 ~IlV~TP~~L-~~~l~~~------~~~l~~~~~lViDEad~ll~ 272 (308)
||++|||++| .++|... ...++.+.++|+||||.|+-
T Consensus 166 dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 166 DIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred CEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 9999999999 5666432 24478899999999999963
No 78
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=4.2e-18 Score=169.56 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=109.5
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|.++|.-.--++..|+ |+.++||+|||++|.+|++..++..
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G------------------------------------ 123 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG------------------------------------ 123 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC------------------------------------
Confidence 78899988776777766 8999999999999999999776533
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
..++|++||++||.|.++++..+....++++.+++||.+...+...+ .+||+||||
T Consensus 124 ----------------------~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~ 179 (896)
T PRK13104 124 ----------------------RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTN 179 (896)
T ss_pred ----------------------CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECC
Confidence 34889999999999999999999999999999999998877665544 589999999
Q ss_pred HHH-HHHHHcC-CcCC-----CCCceEEechhhhcc
Q psy12758 243 GRL-VDMLERG-KIGL-----ANCRFLVLDEADRML 271 (308)
Q Consensus 243 ~~L-~~~l~~~-~~~l-----~~~~~lViDEad~ll 271 (308)
++| .++|..+ .+++ +.+.++||||||.||
T Consensus 180 grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 180 NEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred hhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 999 9999877 3444 589999999999987
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=8.2e-18 Score=169.34 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=133.3
Q ss_pred HHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 77 ALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 77 ~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
...+| .+-++|++++-++..|..++++||||+|||...-+++...+..+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~------------------------------ 162 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG------------------------------ 162 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC------------------------------
Confidence 34566 67899999999999999999999999999999988887776554
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCe
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 236 (308)
.++++.+|.++|.+|.+..+........-.+.++.|+...+. ++.
T Consensus 163 ----------------------------qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN~-------~A~ 207 (1041)
T COG4581 163 ----------------------------QRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINP-------DAP 207 (1041)
T ss_pred ----------------------------CceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeCC-------CCc
Confidence 348889999999999988887765433223345566655543 578
Q ss_pred EEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 237 LLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
++|.|-+.|.+|+-++...+.++.+||+||+|.|-|...+--.+.++-.+ +...|++++|||+|+.
T Consensus 208 clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l----P~~v~~v~LSATv~N~ 273 (1041)
T COG4581 208 CLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL----PDHVRFVFLSATVPNA 273 (1041)
T ss_pred eEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc----CCCCcEEEEeCCCCCH
Confidence 99999999999999998889999999999999999998888888888887 6678999999999975
No 80
>KOG0354|consensus
Probab=99.73 E-value=2.2e-17 Score=160.68 Aligned_cols=175 Identities=19% Similarity=0.179 Sum_probs=132.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccc
Q psy12758 69 TEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLG 148 (308)
Q Consensus 69 ~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (308)
++.......--..-.++.+|.+....++ |+|+++++|||+|||+++...++..+...+.
T Consensus 48 ~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-------------------- 106 (746)
T KOG0354|consen 48 DESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-------------------- 106 (746)
T ss_pred ChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc--------------------
Confidence 3333333333445588999999998888 9999999999999999999999988865532
Q ss_pred cccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhH
Q psy12758 149 LVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQM 228 (308)
Q Consensus 149 li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 228 (308)
.++++++|++-|+.|....+..++.. ..+....||.......
T Consensus 107 ------------------------------------~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r 148 (746)
T KOG0354|consen 107 ------------------------------------GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNR 148 (746)
T ss_pred ------------------------------------ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCch
Confidence 56899999999999888666666655 5566666776555555
Q ss_pred HhhcCCCeEEEECcHHHHHHHHcCCcC-CCCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 229 RDLDRGCHLLVATPGRLVDMLERGKIG-LANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 229 ~~l~~~~~IlV~TP~~L~~~l~~~~~~-l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
..+....+|+|+||..|.+.|.++... |+.+.++||||||+-.... |..-|+.++..- ....|+|++|||.-.+
T Consensus 149 ~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k----~~~~qILgLTASpG~~ 224 (746)
T KOG0354|consen 149 GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK----NQGNQILGLTASPGSK 224 (746)
T ss_pred hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhh----hccccEEEEecCCCcc
Confidence 577778999999999999988776543 6999999999999987654 444454555542 2234999999998643
No 81
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=2.6e-17 Score=158.10 Aligned_cols=168 Identities=21% Similarity=0.294 Sum_probs=125.4
Q ss_pred HHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccc
Q psy12758 74 NNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 152 (308)
Q Consensus 74 ~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (308)
..|++ .||...++-|.++|..+++|+|+++..|||.||++||.+|.+-. .
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~-------------------------- 57 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---E-------------------------- 57 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---C--------------------------
Confidence 33443 69999999999999999999999999999999999999998853 1
Q ss_pred cchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh--
Q psy12758 153 PTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD-- 230 (308)
Q Consensus 153 pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-- 230 (308)
..+|||.|-.+|.....+.++.. |+.++.+.+..+..+....
T Consensus 58 --------------------------------G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~ 101 (590)
T COG0514 58 --------------------------------GLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLN 101 (590)
T ss_pred --------------------------------CCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHH
Confidence 23677777777766655555554 4667777766655544333
Q ss_pred -hc-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 231 -LD-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 231 -l~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
+. ...++|.-+|++|..--....+.-..+.++||||||++.+|| |.+.+.++-...... + +..++++|||-++.
T Consensus 102 ~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~-~-~~p~~AlTATA~~~ 179 (590)
T COG0514 102 QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL-P-NPPVLALTATATPR 179 (590)
T ss_pred HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC-C-CCCEEEEeCCCChH
Confidence 22 347999999999965322222224577899999999999998 999988886544222 2 67899999999886
Q ss_pred CC
Q psy12758 307 IQ 308 (308)
Q Consensus 307 v~ 308 (308)
++
T Consensus 180 v~ 181 (590)
T COG0514 180 VR 181 (590)
T ss_pred HH
Confidence 63
No 82
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.7e-16 Score=147.19 Aligned_cols=164 Identities=21% Similarity=0.182 Sum_probs=132.1
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
-+.-+|+.+|....-..+.+ |.+++.|||-|||+.+++-+...+...+
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------------------------------- 58 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------------------------------- 58 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-------------------------------
Confidence 34557889998888777765 9999999999999999998888775543
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
.++|+++||+-|+.|-...|+++..-..-.++.+.|.......... +...+|+
T Consensus 59 --------------------------~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~-w~~~kVf 111 (542)
T COG1111 59 --------------------------GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREEL-WAKKKVF 111 (542)
T ss_pred --------------------------CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHH-HhhCCEE
Confidence 3589999999999999999999987777788889888887655433 3457899
Q ss_pred EECcHHHHHHHHcCCcCCCCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 239 VATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
|+||.-+.+-+..+.+++.++.++||||||+-.... |..-.+..+.. ..+..++++|||--.+
T Consensus 112 vaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-----~k~~~ilgLTASPGs~ 175 (542)
T COG1111 112 VATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-----AKNPLILGLTASPGSD 175 (542)
T ss_pred EeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh-----ccCceEEEEecCCCCC
Confidence 999999999999999999999999999999976542 44444445544 3466899999996443
No 83
>KOG0947|consensus
Probab=99.65 E-value=9e-16 Score=150.53 Aligned_cols=152 Identities=21% Similarity=0.229 Sum_probs=128.3
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|-..|++||-++..|..++|.|.|.+|||+.+-+++...-...
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~------------------------------------ 340 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHM------------------------------------ 340 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhc------------------------------------
Confidence 78899999999999999999999999999999877765432211
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
.++++.+|-++|-+|-++.|+.-....| ++.|+...+ ..+.++|.|-
T Consensus 341 ----------------------TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvqin-------PeAsCLIMTT 387 (1248)
T KOG0947|consen 341 ----------------------TRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQIN-------PEASCLIMTT 387 (1248)
T ss_pred ----------------------cceEecchhhhhccchHHHHHHhccccc----eeecceeeC-------CCcceEeehH
Confidence 5689999999999999998888776555 566766543 3478999999
Q ss_pred HHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 243 ~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
+.|.+||-++.-.++++.++|+||+|-+-|..++--.+.++-.+ |...++|++|||+|+.+
T Consensus 388 EILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl----P~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 388 EILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML----PRHVNFILLSATVPNTL 448 (1248)
T ss_pred HHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec----cccceEEEEeccCCChH
Confidence 99999999988778999999999999999888777778888777 67899999999999864
No 84
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=9.1e-16 Score=128.50 Aligned_cols=153 Identities=26% Similarity=0.262 Sum_probs=96.6
Q ss_pred CCcHHHHHHHhhHhc-------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 83 KPTPVQKYAIPVIIS-------GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~-------g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
+++++|.+++..+.. .+.+++.++||||||.+++..+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------------- 50 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------------- 50 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------------------
Confidence 578999999998884 58999999999999999886555443
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCc-----------eEEEecCCch
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLR-----------PCVVYGGSNV 224 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~-----------~~~~~gg~~~ 224 (308)
.++++++|+..|+.|..+.+..+....... ..........
T Consensus 51 -----------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (184)
T PF04851_consen 51 -----------------------------RKVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDI 101 (184)
T ss_dssp -----------------------------CEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEE
T ss_pred -----------------------------cceeEecCHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccc
Confidence 136667777777777776664444221100 0011111112
Q ss_pred hHhHHhhcCCCeEEEECcHHHHHHHHcCC-----------cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCC
Q psy12758 225 GDQMRDLDRGCHLLVATPGRLVDMLERGK-----------IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGD 293 (308)
Q Consensus 225 ~~~~~~l~~~~~IlV~TP~~L~~~l~~~~-----------~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~ 293 (308)
......-....+++++|..+|........ ......++||+||||++.... ..+.++. ...
T Consensus 102 ~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~---~~~~i~~------~~~ 172 (184)
T PF04851_consen 102 SDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS---SYREIIE------FKA 172 (184)
T ss_dssp EHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH---HHHHHHH------SSC
T ss_pred ccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH---HHHHHHc------CCC
Confidence 22222334567899999999988765421 223466899999999886532 1455555 235
Q ss_pred ceEEEEeecCCC
Q psy12758 294 RQTLMFSATFPK 305 (308)
Q Consensus 294 ~q~i~~SATl~~ 305 (308)
.-+|+||||.++
T Consensus 173 ~~~l~lTATp~r 184 (184)
T PF04851_consen 173 AFILGLTATPFR 184 (184)
T ss_dssp CEEEEEESS-S-
T ss_pred CeEEEEEeCccC
Confidence 679999999764
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.65 E-value=7.2e-16 Score=155.98 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=106.1
Q ss_pred CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHH
Q psy12758 81 YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q 160 (308)
..+|+|+|..+......+.-+++.||||+|||.+.+..+...+.... ..+++|..||++.+++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-----------------~~gi~~aLPT~Atan~ 346 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-----------------ADSIIFALPTQATANA 346 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----------------CCeEEEECcHHHHHHH
Confidence 34899999988655445567999999999999998877664432221 1356677777777777
Q ss_pred HHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCC-chhHhHHhhc---C---
Q psy12758 161 IYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGS-NVGDQMRDLD---R--- 233 (308)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~---~--- 233 (308)
++++++++...... ...+.+.+.....+..++.+..- +... .+.. .......++. +
T Consensus 347 m~~Rl~~~~~~~f~----------~~~v~L~Hg~a~l~~~~~~~~~~----~~~~---~~~~~~~~~~~~w~~~~~kr~l 409 (878)
T PRK09694 347 MLSRLEALASKLFP----------SPNLILAHGNSRFNHLFQSLKSR----AATE---QGQEEAWVQCCEWLSQSNKRVF 409 (878)
T ss_pred HHHHHHHHHHHhcC----------CCceEeecCcchhhhhhhhhhcc----cccc---cccchhhhHHHHHHhhhhhhhh
Confidence 77777654211110 01234444433222212111110 0000 0000 0000011221 1
Q ss_pred CCeEEEECcHHHHHHH-HcCCcCCCC----CceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 234 GCHLLVATPGRLVDML-ERGKIGLAN----CRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l-~~~~~~l~~----~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
-.+|+|||...++..+ ..+...+.. -++|||||+|.+ +......+..+++.+.. ....+|++|||+|..
T Consensus 410 lapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~---~g~~vIllSATLP~~ 483 (878)
T PRK09694 410 LGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ---AGGSVILLSATLPAT 483 (878)
T ss_pred cCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh---cCCcEEEEeCCCCHH
Confidence 2689999999887543 322222222 258999999976 54445566777766532 246799999999964
No 86
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=9.9e-16 Score=152.48 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=110.0
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|.-..-++..|+ |+.++||+|||+++.+|++-..+..
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-------------------------------- 122 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG-------------------------------- 122 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcC--------------------------------
Confidence 454 78999988887777775 9999999999999999996433322
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+-|++||++||.|.++.+..+....++++.++.|+.+...+.... .+||+
T Consensus 123 --------------------------~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ 174 (830)
T PRK12904 123 --------------------------KGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADIT 174 (830)
T ss_pred --------------------------CCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeE
Confidence 23669999999999999999999999999999999998887776664 48999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
+|||++| .++|+.+. ..++.+.++||||||.||
T Consensus 175 ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 175 YGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred EECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999 99997765 236789999999999987
No 87
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.64 E-value=3e-15 Score=153.39 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=110.5
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHh----hHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy12758 69 TEIITNNIALARYDKPTPVQKYAIP----VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKV 144 (308)
Q Consensus 69 ~~~l~~~L~~~~~~~pt~iQ~~~ip----~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~ 144 (308)
.+.+.+.+...||+ +++.|.+.+. .+..|+++++.||||+|||++|++|++..+. ..
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~----------------- 292 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TE----------------- 292 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CC-----------------
Confidence 44677778888997 7899998666 5567899999999999999999999988764 11
Q ss_pred cccccccccchHHHHHHHHH-HHHHHhhhcCCccccccccccccccccCCH-----------HhHH----HHHHHH----
Q psy12758 145 FPLGLVLAPTRELATQIYDE-AKKFAYRSQLRPCVVRKKVFPLGLVLAPTR-----------ELAT----QIYDEA---- 204 (308)
Q Consensus 145 ~~~~li~~pt~~l~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr-----------eL~~----qi~~~~---- 204 (308)
.+++|++||++|+.|+.+. +..+............-+ .+.=++|..+ ..+. ++..++
T Consensus 293 -~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~k--G~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~ 369 (850)
T TIGR01407 293 -KPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIK--GKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETE 369 (850)
T ss_pred -CeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEE--cchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCC
Confidence 3799999999999999774 444332211100000000 0011111111 0000 111111
Q ss_pred -----------------HHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechh
Q psy12758 205 -----------------KKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEA 267 (308)
Q Consensus 205 -----------------~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEa 267 (308)
..+.....+...+-+-+.+.....+.....+||+|+++..|+..+......+...++||||||
T Consensus 370 tGD~~el~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEA 449 (850)
T TIGR01407 370 TGDLDELNLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEA 449 (850)
T ss_pred ccCHhhccCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECc
Confidence 111101011111112234555555666778999999999998876544333566689999999
Q ss_pred hhccc
Q psy12758 268 DRMLD 272 (308)
Q Consensus 268 d~ll~ 272 (308)
|+|.+
T Consensus 450 H~L~d 454 (850)
T TIGR01407 450 HHLPD 454 (850)
T ss_pred chHHH
Confidence 99986
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.63 E-value=2.2e-15 Score=155.92 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=70.2
Q ss_pred CHHhHHHHHHHHHH-hhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhh-hc
Q psy12758 193 TRELATQIYDEAKK-FAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEAD-RM 270 (308)
Q Consensus 193 treL~~qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad-~l 270 (308)
++++|.++.+++.. ++...|+.+ ....+ ...+++|+|+|||+|++.+....+ ++++++||||||| ++
T Consensus 131 ArsLA~RVA~El~~~lG~~VGY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERs 199 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCVGYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERS 199 (1294)
T ss_pred HHHHHHHHHHHHhhhhcceeceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccc
Confidence 67999999998875 444434322 11111 234689999999999999987655 8999999999999 68
Q ss_pred ccCCCHHH-HHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 271 LDMGFEPQ-IRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 271 l~~~f~~~-l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
++.+|... ++.++.. .++.|+|+||||++.
T Consensus 200 Ln~DfLLg~Lk~lL~~-----rpdlKvILmSATid~ 230 (1294)
T PRK11131 200 LNIDFILGYLKELLPR-----RPDLKVIITSATIDP 230 (1294)
T ss_pred cccchHHHHHHHhhhc-----CCCceEEEeeCCCCH
Confidence 99888643 3333322 347899999999963
No 89
>KOG0951|consensus
Probab=99.60 E-value=2.6e-15 Score=150.61 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy12758 67 QMTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVF 145 (308)
Q Consensus 67 ~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~ 145 (308)
.+|.+-..++ .|+.+...+|..+-++.+.+ .++++|||||+|||..+++-+|+.+-.+... .
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~----d----------- 357 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE----D----------- 357 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc----c-----------
Confidence 4566666655 57778999999999999988 6999999999999999999999988655320 0
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVG 225 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 225 (308)
...+....++++++|.+.|+..+...+.+.....++++.-+.|.....
T Consensus 358 --------------------------------gs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~ 405 (1674)
T KOG0951|consen 358 --------------------------------GSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLG 405 (1674)
T ss_pred --------------------------------cceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccch
Confidence 111222356889999999999999999888889999999998876643
Q ss_pred HhHHhhcCCCeEEEECcHHHHHHHHcCCcC--CCCCceEEechhhhcccCCCHHHHHHHHHhcCC---CCCCCceEEEEe
Q psy12758 226 DQMRDLDRGCHLLVATPGRLVDMLERGKIG--LANCRFLVLDEADRMLDMGFEPQIRCIVQENGM---PRTGDRQTLMFS 300 (308)
Q Consensus 226 ~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~--l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~---~~~~~~q~i~~S 300 (308)
.+.- .+.+|+||||++....-++..-. ..-++++|+||.| |+...+++-++.|..+... ......+++++|
T Consensus 406 ~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLS 481 (1674)
T KOG0951|consen 406 KEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLS 481 (1674)
T ss_pred hhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhhcccCceeeeec
Confidence 3221 24689999999985554442211 3467899999999 5555678888888765422 223467999999
Q ss_pred ecCCCC
Q psy12758 301 ATFPKE 306 (308)
Q Consensus 301 ATl~~~ 306 (308)
||+|+.
T Consensus 482 ATLPNy 487 (1674)
T KOG0951|consen 482 ATLPNY 487 (1674)
T ss_pred ccCCch
Confidence 999974
No 90
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=6.6e-15 Score=146.65 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=107.0
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|+++|.-.--.+..|+ |+.++||.|||++|.+|++...+..
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g------------------------------------ 123 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTG------------------------------------ 123 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcC------------------------------------
Confidence 78889987666666665 8999999999999999998776543
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
..+.|++|+++||.|..+++..+....|+++.++.++.+.... .-.-.|||++|||
T Consensus 124 ----------------------~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~ 179 (908)
T PRK13107 124 ----------------------KGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTN 179 (908)
T ss_pred ----------------------CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCC
Confidence 3489999999999999999999999999999999998876432 2234789999999
Q ss_pred HHH-HHHHHcC-CcCC-----CCCceEEechhhhccc
Q psy12758 243 GRL-VDMLERG-KIGL-----ANCRFLVLDEADRMLD 272 (308)
Q Consensus 243 ~~L-~~~l~~~-~~~l-----~~~~~lViDEad~ll~ 272 (308)
++| .++|..+ .+.. ..+.++||||||.|+-
T Consensus 180 ~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 180 NEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred CcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 999 8998876 3443 7889999999999874
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=1.3e-14 Score=138.28 Aligned_cols=149 Identities=23% Similarity=0.239 Sum_probs=100.4
Q ss_pred CCCCcHHHHHHHhhHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 81 YDKPTPVQKYAIPVIIS----GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~~----g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
...++++|.+++..+.+ ++..++++|||+|||..++-.+-...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------------------------- 80 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------------------------- 80 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc---------------------------------
Confidence 34799999999999998 89999999999999998876654321
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCe
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 236 (308)
..+|||+|+++|+.|..+.+....... .....+||...... . ..
T Consensus 81 ----------------------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~--~~~g~~~~~~~~~~-----~-~~ 124 (442)
T COG1061 81 ----------------------------RSTLVLVPTKELLDQWAEALKKFLLLN--DEIGIYGGGEKELE-----P-AK 124 (442)
T ss_pred ----------------------------CCEEEEECcHHHHHHHHHHHHHhcCCc--cccceecCceeccC-----C-Cc
Confidence 338888888888888876655554222 12233344332211 0 36
Q ss_pred EEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 237 LLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
|.|+|...+........+..+...+||+||||++....|. .+...+..+ .-.+++|||.++.
T Consensus 125 i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~----~~~LGLTATp~R~ 186 (442)
T COG1061 125 VTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAA----YPRLGLTATPERE 186 (442)
T ss_pred EEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhcc----cceeeeccCceee
Confidence 9999998876642112233347899999999999876553 333433111 1189999997643
No 92
>KOG0352|consensus
Probab=99.56 E-value=7.1e-15 Score=133.64 Aligned_cols=170 Identities=22% Similarity=0.292 Sum_probs=108.4
Q ss_pred HHHHHHHH-CCCCC-CcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccc
Q psy12758 71 IITNNIAL-ARYDK-PTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 147 (308)
Q Consensus 71 ~l~~~L~~-~~~~~-pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
.+.++|++ .|+.+ -++.|..|+..+..+ +|+.|++|||+||++||.+|.|.. . .-
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~-------------------gI 63 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G-------------------GI 63 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C-------------------Ce
Confidence 46667765 45553 379999999998877 799999999999999999998853 1 02
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQ 227 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 227 (308)
.|++.|-.+|..++.+.+.++. +++..+..-.+..+.
T Consensus 64 TIV~SPLiALIkDQiDHL~~LK-------------------------------------------Vp~~SLNSKlSt~ER 100 (641)
T KOG0352|consen 64 TIVISPLIALIKDQIDHLKRLK-------------------------------------------VPCESLNSKLSTVER 100 (641)
T ss_pred EEEehHHHHHHHHHHHHHHhcC-------------------------------------------CchhHhcchhhHHHH
Confidence 3444444444444444444432 222222222222222
Q ss_pred HH---hh---cCCCeEEEECcHHHHH-----HHHcCCcCCCCCceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCc
Q psy12758 228 MR---DL---DRGCHLLVATPGRLVD-----MLERGKIGLANCRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDR 294 (308)
Q Consensus 228 ~~---~l---~~~~~IlV~TP~~L~~-----~l~~~~~~l~~~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~ 294 (308)
.+ .| +....+|.-||+.... +|+ ...+-+.+.|+|+||||+...|| |.+++-.+-..- .. -++.
T Consensus 101 ~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR-S~-~~~v 177 (641)
T KOG0352|consen 101 SRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR-SV-CPGV 177 (641)
T ss_pred HHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH-hh-CCCC
Confidence 11 12 2345799999987532 222 22233567899999999999997 777776664321 11 2467
Q ss_pred eEEEEeecCCCCCC
Q psy12758 295 QTLMFSATFPKEIQ 308 (308)
Q Consensus 295 q~i~~SATl~~~v~ 308 (308)
..++++||-+.+||
T Consensus 178 pwvALTATA~~~Vq 191 (641)
T KOG0352|consen 178 PWVALTATANAKVQ 191 (641)
T ss_pred ceEEeecccChhHH
Confidence 89999999998876
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=7.2e-14 Score=135.08 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=74.9
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHH---hh-cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMR---DL-DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||++|+++|+.|+++.++... +.++..++++.+..+..+ .+ ...++|+|||+..+. ..++++.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~ 95 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLG 95 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCC
Confidence 568999999999999999888754 567788888876654432 22 345799999998663 3478999
Q ss_pred eEEechhhhcccCC---C---HHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 261 FLVLDEADRMLDMG---F---EPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 261 ~lViDEad~ll~~~---f---~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
++||||+|.....+ . ..++-.+... ..+.+++++|||-+
T Consensus 96 lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-----~~~~~vil~SATPs 140 (505)
T TIGR00595 96 LIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-----KFNCPVVLGSATPS 140 (505)
T ss_pred EEEEECCCccccccccCCCCcHHHHHHHHHH-----hcCCCEEEEeCCCC
Confidence 99999999876432 1 1223233333 24788999999954
No 94
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.53 E-value=1e-13 Score=135.80 Aligned_cols=61 Identities=28% Similarity=0.320 Sum_probs=51.3
Q ss_pred HhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHH
Q psy12758 92 IPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 169 (308)
Q Consensus 92 ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~ 169 (308)
...+.+++.+++.|+||+|||++|++|++..+.... ..+++|++||++|++|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-----------------~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-----------------DQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-----------------CceEEEECCcHHHHHHHHHHHHHHH
Confidence 344556789999999999999999999998876321 1479999999999999999888775
No 95
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=4.7e-14 Score=139.57 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=102.7
Q ss_pred CCCcHHHHHHHhhHhc-C--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 82 DKPTPVQKYAIPVIIS-G--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~-g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
..++++|.+++..++. | +..++++|||+|||+..+..+.. + .
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l---~------------------------------- 298 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V---K------------------------------- 298 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h---C-------------------------------
Confidence 3689999999998874 3 47899999999999998755432 1 0
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+|||||+.+|+.|..+++.++.......+..+.|+.... .....+|+
T Consensus 299 --------------------------k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~Vv 347 (732)
T TIGR00603 299 --------------------------KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVV 347 (732)
T ss_pred --------------------------CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEE
Confidence 34788999999999999888887644444455555543221 11236899
Q ss_pred EECcHHHHHHHHcC--------CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 239 VATPGRLVDMLERG--------KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 239 V~TP~~L~~~l~~~--------~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
|+|+..+.....+. .+.-....+||+||||++.. .....++..+. .+..+++|||.-+
T Consensus 348 VtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~-----a~~RLGLTATP~R 413 (732)
T TIGR00603 348 VSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ-----AHCKLGLTATLVR 413 (732)
T ss_pred EEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC-----cCcEEEEeecCcc
Confidence 99998775432221 12224677999999999854 44566666652 3457999999864
No 96
>KOG0351|consensus
Probab=99.51 E-value=2.7e-14 Score=144.57 Aligned_cols=170 Identities=19% Similarity=0.255 Sum_probs=126.6
Q ss_pred HHHHH-HHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccc
Q psy12758 72 ITNNI-ALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLV 150 (308)
Q Consensus 72 l~~~L-~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li 150 (308)
+...| ...|....++-|.++|..++.|+|+++.+|||.||++||.+|++-.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------------------------- 303 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------------------------- 303 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------------------------
Confidence 44443 4579999999999999999999999999999999999999997632
Q ss_pred cccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHH-
Q psy12758 151 LAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMR- 229 (308)
Q Consensus 151 ~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~- 229 (308)
.+.+|||.|-..|.......+ ...++..+.+.++....++..
T Consensus 304 ---------------------------------~gitvVISPL~SLm~DQv~~L----~~~~I~a~~L~s~q~~~~~~~i 346 (941)
T KOG0351|consen 304 ---------------------------------GGVTVVISPLISLMQDQVTHL----SKKGIPACFLSSIQTAAERLAI 346 (941)
T ss_pred ---------------------------------CCceEEeccHHHHHHHHHHhh----hhcCcceeeccccccHHHHHHH
Confidence 145788899888876544443 344688888888877764433
Q ss_pred --hhcC---CCeEEEECcHHHHHH--HHcCCcCCCC---CceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCceEE
Q psy12758 230 --DLDR---GCHLLVATPGRLVDM--LERGKIGLAN---CRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 230 --~l~~---~~~IlV~TP~~L~~~--l~~~~~~l~~---~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
.+.+ .++|+..||+++..- +......+.. +.++||||||+...|| |.+..+.+...... -....+|
T Consensus 347 ~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~--~~~vP~i 424 (941)
T KOG0351|consen 347 LQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR--FPGVPFI 424 (941)
T ss_pred HHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh--CCCCCeE
Confidence 3333 579999999988652 3323333444 8899999999999997 88888777543322 2247899
Q ss_pred EEeecCCCCCC
Q psy12758 298 MFSATFPKEIQ 308 (308)
Q Consensus 298 ~~SATl~~~v~ 308 (308)
++|||.+..||
T Consensus 425 ALTATAT~~v~ 435 (941)
T KOG0351|consen 425 ALTATATERVR 435 (941)
T ss_pred EeehhccHHHH
Confidence 99999977653
No 97
>KOG0948|consensus
Probab=99.51 E-value=1.7e-14 Score=138.77 Aligned_cols=153 Identities=24% Similarity=0.255 Sum_probs=125.4
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
+.-|.|..+|-.+-.+..++|+|-|.+|||.++-++|.+.+.++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k------------------------------------ 172 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK------------------------------------ 172 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc------------------------------------
Confidence 66799999999999999999999999999999999988877655
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
-++|+..|-++|-+|-|+++..-.+..| ++.|+.+..- .+..||.|-
T Consensus 173 ----------------------QRVIYTSPIKALSNQKYREl~~EF~DVG----LMTGDVTInP-------~ASCLVMTT 219 (1041)
T KOG0948|consen 173 ----------------------QRVIYTSPIKALSNQKYRELLEEFKDVG----LMTGDVTINP-------DASCLVMTT 219 (1041)
T ss_pred ----------------------CeEEeeChhhhhcchhHHHHHHHhcccc----eeecceeeCC-------CCceeeeHH
Confidence 5688888999999998888877665544 4556665433 367999999
Q ss_pred HHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCCC
Q psy12758 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEIQ 308 (308)
Q Consensus 243 ~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v~ 308 (308)
+.|..||-++.--++.+.++|+||+|.|-|..++--.+.-+-.+ |.+.+.+++|||+|+..|
T Consensus 220 EILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll----P~~vr~VFLSATiPNA~q 281 (1041)
T KOG0948|consen 220 EILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL----PDNVRFVFLSATIPNARQ 281 (1041)
T ss_pred HHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec----cccceEEEEeccCCCHHH
Confidence 99999999998889999999999999999976544444333333 668899999999998653
No 98
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.51 E-value=1.4e-13 Score=139.84 Aligned_cols=171 Identities=22% Similarity=0.234 Sum_probs=102.0
Q ss_pred HHHCCCCCCcHHHHHHHhh----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q psy12758 76 IALARYDKPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVL 151 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~----i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~ 151 (308)
+.-.|| .+++-|.+.... +..++.++++|+||||||++|++|++... . ..+++|+
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--~------------------~~~vvI~ 297 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--D------------------QRQIIVS 297 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--C------------------CCcEEEE
Confidence 333466 589999885544 44578999999999999999999988753 1 2479999
Q ss_pred ccchHHHHHHH-HHHHHHHhhhcCCccccccccccccccccCCH------------H---hHHHHHHHHH----------
Q psy12758 152 APTRELATQIY-DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTR------------E---LATQIYDEAK---------- 205 (308)
Q Consensus 152 ~pt~~l~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr------------e---L~~qi~~~~~---------- 205 (308)
+||++|++|+. ..+..+......... ..+ ...-+||..| . ...++..++.
T Consensus 298 t~T~~Lq~Ql~~~~i~~l~~~~~~~~~--~~k--g~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El 373 (820)
T PRK07246 298 VPTKILQDQIMAEEVKAIQEVFHIDCH--SLK--GPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEI 373 (820)
T ss_pred eCcHHHHHHHHHHHHHHHHHhcCCcEE--EEE--CCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhc
Confidence 99999999995 555554433222111 011 1111222211 0 0011111111
Q ss_pred -----------HhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc
Q psy12758 206 -----------KFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD 272 (308)
Q Consensus 206 -----------~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~ 272 (308)
.+.....+...|-+-+.+.....+.....+||+|+++..|...+..... +...++|||||||++-+
T Consensus 374 ~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 374 KQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLML 450 (820)
T ss_pred cCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHH
Confidence 1110101111111223344444555566799999999988887654433 67889999999999875
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.50 E-value=3e-13 Score=140.58 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHhhHh----cC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 82 DKPTPVQKYAIPVII----SG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~----~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
..++++|.+||..+. .| +..+++++||||||.+++. ++..++....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~---------------------------- 462 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKR---------------------------- 462 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCc----------------------------
Confidence 358999999998776 33 6899999999999988543 4444443321
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCe
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 236 (308)
..++|||+++++|+.|..+.++.+..........+++....... .......
T Consensus 463 ---------------------------~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~ 513 (1123)
T PRK11448 463 ---------------------------FRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDK--FPEDETK 513 (1123)
T ss_pred ---------------------------cCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhh--cccCCCC
Confidence 15688889999999998888887643222111112221111111 1123568
Q ss_pred EEEECcHHHHHHHHc-----CCcCCCCCceEEechhhhccc---------CC------CHHHHHHHHHhcCCCCCCCceE
Q psy12758 237 LLVATPGRLVDMLER-----GKIGLANCRFLVLDEADRMLD---------MG------FEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 237 IlV~TP~~L~~~l~~-----~~~~l~~~~~lViDEad~ll~---------~~------f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
|+|+|...|...+.. ..+.+..+++||+||||+-.. .+ +...++.++.++ +.-.
T Consensus 514 I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF------dA~~ 587 (1123)
T PRK11448 514 VHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF------DAVK 587 (1123)
T ss_pred EEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc------CccE
Confidence 999999998776432 124567889999999999531 01 234567777764 2457
Q ss_pred EEEeecCC
Q psy12758 297 LMFSATFP 304 (308)
Q Consensus 297 i~~SATl~ 304 (308)
|+||||--
T Consensus 588 IGLTATP~ 595 (1123)
T PRK11448 588 IGLTATPA 595 (1123)
T ss_pred EEEecCCc
Confidence 99999963
No 100
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.49 E-value=4.7e-13 Score=120.82 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=59.2
Q ss_pred CCcHHHHH----HHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKY----AIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~----~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|+|.|.+ +...+..|+++++.||||+|||++|++|++.++...+.. ....+++++++|+.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------------~~~~kvi~~t~T~~~~ 74 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------------IQKIKLIYLSRTVSEI 74 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------------ccccceeEEeccHHHH
Confidence 46999999 445566789999999999999999999999887654320 0234789999999999
Q ss_pred HHHHHHHHHH
Q psy12758 159 TQIYDEAKKF 168 (308)
Q Consensus 159 ~q~~~~~~~~ 168 (308)
.|....+++.
T Consensus 75 ~q~i~~l~~~ 84 (289)
T smart00488 75 EKRLEELRKL 84 (289)
T ss_pred HHHHHHHHhc
Confidence 9998888775
No 101
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.49 E-value=4.7e-13 Score=120.82 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=59.2
Q ss_pred CCcHHHHH----HHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKY----AIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~----~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|+|.|.+ +...+..|+++++.||||+|||++|++|++.++...+.. ....+++++++|+.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------------~~~~kvi~~t~T~~~~ 74 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------------IQKIKLIYLSRTVSEI 74 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------------ccccceeEEeccHHHH
Confidence 46999999 445566789999999999999999999999887654320 0234789999999999
Q ss_pred HHHHHHHHHH
Q psy12758 159 TQIYDEAKKF 168 (308)
Q Consensus 159 ~q~~~~~~~~ 168 (308)
.|....+++.
T Consensus 75 ~q~i~~l~~~ 84 (289)
T smart00489 75 EKRLEELRKL 84 (289)
T ss_pred HHHHHHHHhc
Confidence 9998888775
No 102
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.47 E-value=6.7e-13 Score=128.03 Aligned_cols=168 Identities=24% Similarity=0.357 Sum_probs=127.6
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHHhhHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 67 QMTEIITNNI-ALARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 67 ~l~~~l~~~L-~~~~~~~pt~iQ~~~ip~i~~g------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
.....+++.+ ..+.| ++|.-|+.++..|... .+=++++--|||||+.+++.++..+-..
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G------------- 311 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG------------- 311 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-------------
Confidence 3344455554 55666 7999999999998864 3669999999999999999999876433
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.++..++||.-||.|-++.+.++....++++..+.
T Consensus 312 ---------------------------------------------~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLt 346 (677)
T COG1200 312 ---------------------------------------------YQAALMAPTEILAEQHYESLRKWLEPLGIRVALLT 346 (677)
T ss_pred ---------------------------------------------CeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEee
Confidence 56889999999999999999999999999999999
Q ss_pred cCCchhHhHH---hhcCC-CeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCce
Q psy12758 220 GGSNVGDQMR---DLDRG-CHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQ 295 (308)
Q Consensus 220 gg~~~~~~~~---~l~~~-~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q 295 (308)
|......... .+.+| .||+|||+. |-...+.|+++.++|+||=|++ +-.=+..+..-+. ...-
T Consensus 347 G~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~KG~---~~Ph 413 (677)
T COG1200 347 GSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHRF-----GVHQRLALREKGE---QNPH 413 (677)
T ss_pred cccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEeccccc-----cHHHHHHHHHhCC---CCCc
Confidence 9877655544 34444 899999974 3335566899999999999985 3333333333211 0356
Q ss_pred EEEEeec-CCCC
Q psy12758 296 TLMFSAT-FPKE 306 (308)
Q Consensus 296 ~i~~SAT-l~~~ 306 (308)
.++|||| +|+.
T Consensus 414 ~LvMTATPIPRT 425 (677)
T COG1200 414 VLVMTATPIPRT 425 (677)
T ss_pred EEEEeCCCchHH
Confidence 8899999 5653
No 103
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.46 E-value=5.7e-13 Score=138.57 Aligned_cols=159 Identities=23% Similarity=0.255 Sum_probs=99.3
Q ss_pred HCCCCCCcHHHH---HHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc
Q psy12758 78 LARYDKPTPVQK---YAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPT 154 (308)
Q Consensus 78 ~~~~~~pt~iQ~---~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt 154 (308)
...|...-|+.. +.+..+.+++.+|++|+||||||. .+|.+.. ..+..
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll--e~~~~------------------------- 109 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICL--ELGRG------------------------- 109 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH--HcCCC-------------------------
Confidence 345666667665 455556667788999999999999 4565432 11100
Q ss_pred hHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecC-CchhHhHHhhcC
Q psy12758 155 RELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGG-SNVGDQMRDLDR 233 (308)
Q Consensus 155 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~ 233 (308)
...++++.-|.|--|..++..+.. ..+..+...+|. .....+. ..
T Consensus 110 ----------------------------~~~~I~~tQPRRlAA~svA~RvA~---elg~~lG~~VGY~vR~~~~~---s~ 155 (1283)
T TIGR01967 110 ----------------------------SHGLIGHTQPRRLAARTVAQRIAE---ELGTPLGEKVGYKVRFHDQV---SS 155 (1283)
T ss_pred ----------------------------CCceEecCCccHHHHHHHHHHHHH---HhCCCcceEEeeEEcCCccc---CC
Confidence 001233344555444443333222 223333333332 1222221 34
Q ss_pred CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhh-hcccCCCHHH-HHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 234 GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEAD-RMLDMGFEPQ-IRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad-~ll~~~f~~~-l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
...|.|+|+|+|+..+..... ++++++||||||| ++++.+|.-. ++.++.. .++.|+|+||||++.
T Consensus 156 ~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-----rpdLKlIlmSATld~ 223 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-----RPDLKIIITSATIDP 223 (1283)
T ss_pred CceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhh-----CCCCeEEEEeCCcCH
Confidence 578999999999999877654 8999999999999 6999887654 5666543 247899999999963
No 104
>KOG0950|consensus
Probab=99.45 E-value=2.5e-13 Score=134.10 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=141.1
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHHH--hhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 63 FDDIQMTEIITNNIALARYDKPTPVQKYAI--PVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 63 f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~i--p~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
|.+.+++..........|......||.+++ |.++.++|+|..+||+.|||++.-+-++...+...
T Consensus 203 ~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r------------- 269 (1008)
T KOG0950|consen 203 FAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR------------- 269 (1008)
T ss_pred hhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-------------
Confidence 333344444455567789999999999988 77889999999999999999999998888775543
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
..++.+.|....+..-...+..+....|+.+...+|
T Consensus 270 --------------------------------------------r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g 305 (1008)
T KOG0950|consen 270 --------------------------------------------RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAG 305 (1008)
T ss_pred --------------------------------------------hceeEecceeehhHHHHhhhhhhccccCCcchhhcc
Confidence 447777888888887788888888888999988887
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcC--CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCC-CCCCceEE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERG--KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMP-RTGDRQTL 297 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~-~~~~~q~i 297 (308)
........+ .-++.|||-++-..++++- .-.+..+.++|+||.|.+.|.+.+..++.++..+-.. .....|+|
T Consensus 306 ~~~p~~~~k----~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iI 381 (1008)
T KOG0950|consen 306 RFPPEKRRK----RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQII 381 (1008)
T ss_pred cCCCCCccc----ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEe
Confidence 665544332 3479999999988776542 2235778899999999999999999999998865222 12236799
Q ss_pred EEeecCCC
Q psy12758 298 MFSATFPK 305 (308)
Q Consensus 298 ~~SATl~~ 305 (308)
++|||+|+
T Consensus 382 GMSATi~N 389 (1008)
T KOG0950|consen 382 GMSATIPN 389 (1008)
T ss_pred eeecccCC
Confidence 99999986
No 105
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.43 E-value=1.7e-12 Score=133.97 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=101.9
Q ss_pred CCCCCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 80 RYDKPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
|| .+++-|.+.+..+. .++.+++.|+||+|||++||+|++.+....+ -+++|.++|+
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~------------------~~vvIsT~T~ 315 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKE------------------EPVVISTYTI 315 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccC------------------CeEEEEcCCH
Confidence 44 78999988665544 6789999999999999999999987765433 4799999999
Q ss_pred HHHHHHHHHHHHH-HhhhcCCccccccccccccccccCCH------------H---hHHHHHHHHHHh------------
Q psy12758 156 ELATQIYDEAKKF-AYRSQLRPCVVRKKVFPLGLVLAPTR------------E---LATQIYDEAKKF------------ 207 (308)
Q Consensus 156 ~l~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~lil~Ptr------------e---L~~qi~~~~~~~------------ 207 (308)
.|++|+...-... ..-.+.......-+ .+.-++|..+ + +..++..++..-
T Consensus 316 ~LQ~Ql~~kDiP~L~~~~~~~~~~~~lK--Gr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~ 393 (928)
T PRK08074 316 QLQQQLLEKDIPLLQKIFPFPVEAALLK--GRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPS 393 (928)
T ss_pred HHHHHHHHhhHHHHHHHcCCCceEEEEE--cccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCC
Confidence 9999998742221 11111100000000 1222333322 0 001111111100
Q ss_pred ---------hhcC--CCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccC
Q psy12758 208 ---------AYRS--QLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM 273 (308)
Q Consensus 208 ---------~~~~--~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~ 273 (308)
.... +....|-+-+.+.....+.....+||+|+++..|+..+..+.-.+...+++||||||++-+.
T Consensus 394 ~~~~~w~~i~~~~~~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 394 GGKLLWNRIASDGESDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEEA 470 (928)
T ss_pred CCcchHHHhhccCcccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHHH
Confidence 0000 00000111123445555555678999999999988776443333677899999999999853
No 106
>KOG0353|consensus
Probab=99.42 E-value=1.1e-12 Score=117.87 Aligned_cols=177 Identities=19% Similarity=0.316 Sum_probs=119.7
Q ss_pred cCCCCCHHHHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy12758 64 DDIQMTEIITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRK 142 (308)
Q Consensus 64 ~~l~l~~~l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~ 142 (308)
++++.+....+.|+. ...++.+|.|..+|.+.++|+|+++..|||.||++||.+|.|-. .
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---d---------------- 134 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---D---------------- 134 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---C----------------
Confidence 345666777776654 45678899999999999999999999999999999999998742 1
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCC
Q psy12758 143 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGS 222 (308)
Q Consensus 143 ~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 222 (308)
..+||++|...|.+...-++++++ +....+....
T Consensus 135 ------------------------------------------g~alvi~plislmedqil~lkqlg----i~as~lnans 168 (695)
T KOG0353|consen 135 ------------------------------------------GFALVICPLISLMEDQILQLKQLG----IDASMLNANS 168 (695)
T ss_pred ------------------------------------------CceEeechhHHHHHHHHHHHHHhC----cchhhccCcc
Confidence 336666666666665555555543 3333333222
Q ss_pred chhHhHH------hhcCCCeEEEECcHHHHH---HHHc--CCcCCCCCceEEechhhhcccCC--CHHHHHHHHHhcCCC
Q psy12758 223 NVGDQMR------DLDRGCHLLVATPGRLVD---MLER--GKIGLANCRFLVLDEADRMLDMG--FEPQIRCIVQENGMP 289 (308)
Q Consensus 223 ~~~~~~~------~l~~~~~IlV~TP~~L~~---~l~~--~~~~l~~~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~ 289 (308)
+..+..+ .......++..||+++.. ++++ +.+....++++-+||+|+...|| |.+++..+--. +..
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~il-krq 247 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGIL-KRQ 247 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHH-HHh
Confidence 2221111 112346799999999854 3332 33556778899999999999987 66666554211 111
Q ss_pred CCCCceEEEEeecCCCCC
Q psy12758 290 RTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 290 ~~~~~q~i~~SATl~~~v 307 (308)
-++..++.++||-+..|
T Consensus 248 -f~~~~iigltatatn~v 264 (695)
T KOG0353|consen 248 -FKGAPIIGLTATATNHV 264 (695)
T ss_pred -CCCCceeeeehhhhcch
Confidence 24677999999987765
No 107
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.39 E-value=5.5e-12 Score=126.58 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCCCCcHHHHHHHhhHh---c------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccc
Q psy12758 80 RYDKPTPVQKYAIPVII---S------GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLV 150 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~i~---~------g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li 150 (308)
|| .+++-|.+.+..+. + ++.+++.|+||+|||+|||+|++.+....+ -+++|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~------------------k~vVI 83 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK------------------KKLVI 83 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC------------------CeEEE
Confidence 55 68999988665544 3 367999999999999999999998776554 37999
Q ss_pred cccchHHHHHHHHH
Q psy12758 151 LAPTRELATQIYDE 164 (308)
Q Consensus 151 ~~pt~~l~~q~~~~ 164 (308)
.+.|..|++|+...
T Consensus 84 ST~T~~LQeQL~~k 97 (697)
T PRK11747 84 STATVALQEQLVSK 97 (697)
T ss_pred EcCCHHHHHHHHhh
Confidence 99999999999864
No 108
>KOG0949|consensus
Probab=99.35 E-value=3.3e-12 Score=126.14 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=117.9
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|-.||.+.+..+-.+..+++.|||.+|||++-...+=..+.....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~---------------------------------- 556 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS---------------------------------- 556 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC----------------------------------
Confidence 6889999999999999999999999999998755544433332221
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEecCCchhHhHHhhcCCCeEEEEC
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IlV~T 241 (308)
..+|+++||++|++|+...+....... -.+...+.|..+...++. .-.|+|+|+-
T Consensus 557 ----------------------~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITv 612 (1330)
T KOG0949|consen 557 ----------------------DVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITV 612 (1330)
T ss_pred ----------------------CEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEc
Confidence 558889999999999988877666332 233334455544444433 3369999999
Q ss_pred cHHHHHHHHc---CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 242 PGRLVDMLER---GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 242 P~~L~~~l~~---~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
|+.|..+|.. ..-...+++++|+||+|.+....-.-..++++... .+.++++|||+.+
T Consensus 613 PecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li------~CP~L~LSATigN 673 (1330)
T KOG0949|consen 613 PECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI------PCPFLVLSATIGN 673 (1330)
T ss_pred hHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc------CCCeeEEecccCC
Confidence 9999999876 34457899999999999998765445556666655 3559999999854
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.35 E-value=4.8e-12 Score=126.50 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=95.6
Q ss_pred CCcHHHHHHHhhHh----c------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccc
Q psy12758 83 KPTPVQKYAIPVII----S------GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 152 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~----~------g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (308)
-|+++|..|+..+. . .+..+++.+||||||+..+..+...+ ...
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~------------------------- 291 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELL------------------------- 291 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhc-------------------------
Confidence 37889999887754 2 25789999999999998766554333 211
Q ss_pred cchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhc
Q psy12758 153 PTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLD 232 (308)
Q Consensus 153 pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~ 232 (308)
..+++|||+|+.+|..|+.+.+..+.... ..+..+.......+.
T Consensus 292 ------------------------------~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~ 335 (667)
T TIGR00348 292 ------------------------------KNPKVFFVVDRRELDYQLMKEFQSLQKDC------AERIESIAELKRLLE 335 (667)
T ss_pred ------------------------------CCCeEEEEECcHHHHHHHHHHHHhhCCCC------CcccCCHHHHHHHHh
Confidence 11678888999999999888888875321 111112222222332
Q ss_pred -CCCeEEEECcHHHHHHHHcC--CcCCCCC-ceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 233 -RGCHLLVATPGRLVDMLERG--KIGLANC-RFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 233 -~~~~IlV~TP~~L~~~l~~~--~~~l~~~-~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
....|+|+|...|...+... .+....- -++|+||||+.....+...|+ ..+ ++...++||||-
T Consensus 336 ~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~---~~~-----p~a~~lGfTaTP 402 (667)
T TIGR00348 336 KDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK---KAL-----KNASFFGFTGTP 402 (667)
T ss_pred CCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH---hhC-----CCCcEEEEeCCC
Confidence 24689999999998654332 1211111 279999999876443333332 333 246799999996
No 110
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.26 E-value=1.1e-10 Score=118.59 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=125.1
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHhhHhc----C--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy12758 71 IITNNIAL-ARYDKPTPVQKYAIPVIIS----G--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKK 143 (308)
Q Consensus 71 ~l~~~L~~-~~~~~pt~iQ~~~ip~i~~----g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~ 143 (308)
.....+.. .+| .-|+=|..||..+.+ + .|=++|+--|-|||..++-+++....+.
T Consensus 582 ~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----------------- 643 (1139)
T COG1197 582 EWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----------------- 643 (1139)
T ss_pred HHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------------
Confidence 33444432 344 568999999999874 3 4899999999999999998887765433
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCc
Q psy12758 144 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSN 223 (308)
Q Consensus 144 ~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~ 223 (308)
.++.|++||--||.|-++.|+.......+++..+.--.+
T Consensus 644 -----------------------------------------KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s 682 (1139)
T COG1197 644 -----------------------------------------KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRS 682 (1139)
T ss_pred -----------------------------------------CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCC
Confidence 679999999999999999999999999999998876666
Q ss_pred hhHhHHhh---c-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 224 VGDQMRDL---D-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 224 ~~~~~~~l---~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
.+++...+ + ...||+|||+ .+| .+.+.++++.+|||||=|++. ...-+.++.+-. +.-++-+
T Consensus 683 ~kE~~~il~~la~G~vDIvIGTH----rLL-~kdv~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr~--------~VDvLTL 748 (1139)
T COG1197 683 AKEQKEILKGLAEGKVDIVIGTH----RLL-SKDVKFKDLGLLIIDEEQRFG-VKHKEKLKELRA--------NVDVLTL 748 (1139)
T ss_pred HHHHHHHHHHHhcCCccEEEech----Hhh-CCCcEEecCCeEEEechhhcC-ccHHHHHHHHhc--------cCcEEEe
Confidence 66555443 3 4589999997 333 355668999999999999863 334455555543 4569999
Q ss_pred eec-CCCCC
Q psy12758 300 SAT-FPKEI 307 (308)
Q Consensus 300 SAT-l~~~v 307 (308)
||| +|+.+
T Consensus 749 SATPIPRTL 757 (1139)
T COG1197 749 SATPIPRTL 757 (1139)
T ss_pred eCCCCcchH
Confidence 999 67654
No 111
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=4.2e-11 Score=119.85 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.| -.|.++|.-.--.+..|+ |+.+.||+|||+++.+|++...+..
T Consensus 79 lG-m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G-------------------------------- 123 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSG-------------------------------- 123 (913)
T ss_pred hC-CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcC--------------------------------
Confidence 35 478899987766666665 8899999999999999998766544
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+.|++|+.-||.|-++++..+....|+++.++.++........... +||+
T Consensus 124 --------------------------~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~ 175 (913)
T PRK13103 124 --------------------------KGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADIT 175 (913)
T ss_pred --------------------------CCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEE
Confidence 458899999999999999999999999999999988777665544443 8999
Q ss_pred EECcHHH-HHHHHcCCc------CCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGKI------GLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~~------~l~~~~~lViDEad~ll 271 (308)
+||..-| .++|..+.. ....+.+.||||+|.+|
T Consensus 176 YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 176 YGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999887 555554422 13788999999999987
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.22 E-value=4.4e-10 Score=112.20 Aligned_cols=133 Identities=23% Similarity=0.333 Sum_probs=95.4
Q ss_pred CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 80 RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
|| .|+..|+-....+..|+.+-+.||||.|||.--++..+- +...
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a~k--------------------------------- 124 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LAKK--------------------------------- 124 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HHhc---------------------------------
Confidence 44 999999999999999999999999999999754444332 2211
Q ss_pred HHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCC-CceEEE-ecCCchhHh---HHhh-cC
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQ-LRPCVV-YGGSNVGDQ---MRDL-DR 233 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~-~~~~~~-~gg~~~~~~---~~~l-~~ 233 (308)
+.+++++.||..|+.|+++.+++++...+ .++..+ ++.....+. ...+ ..
T Consensus 125 ------------------------gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g 180 (1187)
T COG1110 125 ------------------------GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG 180 (1187)
T ss_pred ------------------------CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC
Confidence 15688999999999999999999987665 444443 344333332 2233 34
Q ss_pred CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccC
Q psy12758 234 GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM 273 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~ 273 (308)
+.||+|+|..-|...+..-. --+++++++|++|.++..
T Consensus 181 dfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 181 DFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred CccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhc
Confidence 68999999876655443311 136789999999998864
No 113
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.3e-10 Score=103.71 Aligned_cols=147 Identities=23% Similarity=0.307 Sum_probs=108.9
Q ss_pred CCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
+.|+.|+.+-..+. +.+|.++.|-||+|||.. +++.++..++.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G------------------------------- 144 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG------------------------------- 144 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC-------------------------------
Confidence 77899988776654 568999999999999996 466666666654
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
.++.+..|....|.+++..+++-.. +....++||+.....+ ..++
T Consensus 145 --------------------------~~vciASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plv 189 (441)
T COG4098 145 --------------------------GRVCIASPRVDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLV 189 (441)
T ss_pred --------------------------CeEEEecCcccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEE
Confidence 5678888999999999988887653 4667889998877654 5799
Q ss_pred EECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 239 VATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
|+|-..|+.+- +.++++||||+|.+--..- ..++.-++.- .....-+|.+|||-|+++
T Consensus 190 VaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d-~~L~~Av~~a---rk~~g~~IylTATp~k~l 247 (441)
T COG4098 190 VATTHQLLRFK-------QAFDLLIIDEVDAFPFSDD-QSLQYAVKKA---RKKEGATIYLTATPTKKL 247 (441)
T ss_pred EEehHHHHHHH-------hhccEEEEeccccccccCC-HHHHHHHHHh---hcccCceEEEecCChHHH
Confidence 99998887764 3567899999998754322 2334333332 134567899999988654
No 114
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=5.9e-11 Score=119.75 Aligned_cols=174 Identities=21% Similarity=0.241 Sum_probs=107.3
Q ss_pred CCCCCcHHHHHHHhh----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 80 RYDKPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~----i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
-|..++|.|.+.+.. +..|+++++.||||+|||++.|.|+|.+....+ ...++++.++|+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------------~~~kIiy~sRTh 70 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------------EVRKIIYASRTH 70 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------------ccccEEEEcccc
Confidence 466779999887755 446799999999999999999999999876542 125899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHH--H---------HHHHHHHhhhcC-C--------Cce
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELAT--Q---------IYDEAKKFAYRS-Q--------LRP 215 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~--q---------i~~~~~~~~~~~-~--------~~~ 215 (308)
....|+.+++++.......+.. .....+++++...+.+|. . +.+.|+.+.... . -+.
T Consensus 71 sQl~q~i~Elk~~~~~~~~~~~---~~~~i~~v~L~SR~~lCin~~v~~~~~~~~~~~~C~~l~~~~~~~~~~~~~~~~~ 147 (705)
T TIGR00604 71 SQLEQATEELRKLMSYRTPRIG---EESPVSGLSLASRKNLCLHPEVSKERQGKVVNGKCIKLTVSKIKEQRTEKPNVES 147 (705)
T ss_pred hHHHHHHHHHHhhhhccccccc---cCCceeEEEechHhhcccChHHHhhcchhhHHHHHHHHHhhhhcccccccCCCCC
Confidence 9999999999996421110000 001134455544444441 1 111233221000 0 000
Q ss_pred EEEec-----------------------------CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCC--cCCCCCceEEe
Q psy12758 216 CVVYG-----------------------------GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGK--IGLANCRFLVL 264 (308)
Q Consensus 216 ~~~~g-----------------------------g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~--~~l~~~~~lVi 264 (308)
|-.|. +.+.....+.....+||||+....|++--.+.. +.+++ .+|||
T Consensus 148 C~yy~~~~~~~~~~~~~~~~~~diEdL~~~g~~~~~CPY~~sr~~~~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~ 226 (705)
T TIGR00604 148 CEFYENFDELREVEDLLLSEIMDIEDLVEYGELLGLCPYFATRKMLPFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIF 226 (705)
T ss_pred CCCCchhhhhhhhhhhcccCCCCHHHHHHhcccCCCCccHHHHHhhhcCCEEEechHHhcCHHHHHHhhccccc-CEEEE
Confidence 11111 233333344444568999999998876543332 33444 68999
Q ss_pred chhhhcccC
Q psy12758 265 DEADRMLDM 273 (308)
Q Consensus 265 DEad~ll~~ 273 (308)
||||++.+.
T Consensus 227 DEAHNL~d~ 235 (705)
T TIGR00604 227 DEAHNLDNV 235 (705)
T ss_pred ECccchHHH
Confidence 999999863
No 115
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.18 E-value=1.9e-10 Score=115.34 Aligned_cols=74 Identities=27% Similarity=0.376 Sum_probs=62.2
Q ss_pred HHCCCCCCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccc
Q psy12758 77 ALARYDKPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 152 (308)
Q Consensus 77 ~~~~~~~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (308)
....+..|++.|.+.+..+. .|+.+++.||||+|||++||+|++......+ .+++|.+
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~------------------~~viist 70 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG------------------KKVIIST 70 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC------------------CcEEEEC
Confidence 34566799999998885543 4567999999999999999999999886654 4799999
Q ss_pred cchHHHHHHHHHHHHH
Q psy12758 153 PTRELATQIYDEAKKF 168 (308)
Q Consensus 153 pt~~l~~q~~~~~~~~ 168 (308)
+|+.|.+|++++....
T Consensus 71 ~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 71 RTKALQEQLLEEDLPI 86 (654)
T ss_pred CCHHHHHHHHHhhcch
Confidence 9999999999988775
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=3.8e-10 Score=110.69 Aligned_cols=130 Identities=19% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|.-..-.++.|+ |+.+.||.|||++..+|++...+..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G-------------------------------- 119 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQG-------------------------------- 119 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcC--------------------------------
Confidence 354 79999999998888885 7899999999999999998776544
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+.|++|+.-||.|-++++..+....|+++.++.++.+..+..... .|||.
T Consensus 120 --------------------------~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DIt 171 (764)
T PRK12326 120 --------------------------RRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVT 171 (764)
T ss_pred --------------------------CCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCE
Confidence 45889999999999999999999999999999998887765444333 58999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
.+|..-| .++|+.+. .....+.+.||||+|.+|
T Consensus 172 YgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 172 YASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 9999877 45554432 124668899999999887
No 117
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.12 E-value=1.7e-09 Score=95.80 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=98.0
Q ss_pred CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHH
Q psy12758 81 YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q 160 (308)
-..|+++|..++=.+..|+ ++...||=|||++..+|+.-..+..
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G---------------------------------- 118 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG---------------------------------- 118 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS----------------------------------
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc----------------------------------
Confidence 3489999999998887776 9999999999999988877665543
Q ss_pred HHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEE
Q psy12758 161 IYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVA 240 (308)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~ 240 (308)
..+-|++.+..||..=++++..+....|+.+.+..++.......... .+||+.+
T Consensus 119 ------------------------~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~ 172 (266)
T PF07517_consen 119 ------------------------KGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYG 172 (266)
T ss_dssp ------------------------S-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEE
T ss_pred ------------------------CCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCccccc
Confidence 34778899999999999999999999999999999888765433333 3689999
Q ss_pred CcHHHH-HHHHcCCc------CCCCCceEEechhhhcc
Q psy12758 241 TPGRLV-DMLERGKI------GLANCRFLVLDEADRML 271 (308)
Q Consensus 241 TP~~L~-~~l~~~~~------~l~~~~~lViDEad~ll 271 (308)
|...|. ++|..... ....+.++||||||.++
T Consensus 173 t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 173 TNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999984 56654321 14688999999999876
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=3.9e-10 Score=112.49 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=106.0
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|.-..=++..|+ |+...||+|||++..+|++...+..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G-------------------------------- 121 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG-------------------------------- 121 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC--------------------------------
Confidence 353 79999988877777777 9999999999999999988776554
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+-|++||.-||.|=++.+..+....|+++.++.|+.+........ .|||+
T Consensus 122 --------------------------~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~ 173 (796)
T PRK12906 122 --------------------------KGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDIT 173 (796)
T ss_pred --------------------------CCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCe
Confidence 45789999999999999999999999999999998877666544333 58999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
.+|..-| .++|+.+. .....+.+.||||+|.+|
T Consensus 174 Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 174 YSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred ecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999888 45665432 124578899999999887
No 119
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.11 E-value=7.8e-10 Score=99.81 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred ccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHH--------HHHHcCCcCCC
Q psy12758 186 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLV--------DMLERGKIGLA 257 (308)
Q Consensus 186 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~--------~~l~~~~~~l~ 257 (308)
.+||++|. .+..|..+++.+++....+++..+.|+..............+++|+|.+.+. +.+.. -
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~ 133 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----I 133 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----S
T ss_pred ceeEeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----c
Confidence 38999999 8888999999998866566666655555233333333456899999999888 22222 2
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+.+++|+||+|.+-+.. ......+..+. ....+++|||-
T Consensus 134 ~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-----~~~~~lLSgTP 172 (299)
T PF00176_consen 134 KWDRVIVDEAHRLKNKD--SKRYKALRKLR-----ARYRWLLSGTP 172 (299)
T ss_dssp EEEEEEETTGGGGTTTT--SHHHHHHHCCC-----ECEEEEE-SS-
T ss_pred cceeEEEeccccccccc--ccccccccccc-----cceEEeecccc
Confidence 37889999999985432 23333333352 45678889994
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.10 E-value=3e-10 Score=114.80 Aligned_cols=167 Identities=22% Similarity=0.190 Sum_probs=99.1
Q ss_pred CCcHHHHHHHhhHhcC---C-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVIISG---R-DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g---~-d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.+.+.|..++..+... . .+++.||||.|||.+.+.+++..+.+.. ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------------~~~------------- 246 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------------KLK------------- 246 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------------ccc-------------
Confidence 3389999999888865 4 7899999999999999999988765420 011
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh--------
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD-------- 230 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-------- 230 (308)
.+.+++.|++.+.+++++.++......++.....+|..........
T Consensus 247 --------------------------~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~ 300 (733)
T COG1203 247 --------------------------SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTL 300 (733)
T ss_pred --------------------------ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeE
Confidence 4556666666666666666665544433322212221111000000
Q ss_pred ------hcCCCeEEEECcHHHHHHHHc-CCcC-CC--CCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 231 ------LDRGCHLLVATPGRLVDMLER-GKIG-LA--NCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 231 ------l~~~~~IlV~TP~~L~~~l~~-~~~~-l~--~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
......+.++||-........ .... +. ....+|+||+|.+-+......+..++..+. ..+..+|++|
T Consensus 301 ~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~---~~g~~ill~S 377 (733)
T COG1203 301 TTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALA---EAGVPVLLMS 377 (733)
T ss_pred EecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHH---hCCCCEEEEe
Confidence 011245666776555542211 1111 11 235799999998877644445555555543 2366799999
Q ss_pred ecCCCC
Q psy12758 301 ATFPKE 306 (308)
Q Consensus 301 ATl~~~ 306 (308)
||+|+.
T Consensus 378 ATlP~~ 383 (733)
T COG1203 378 ATLPPF 383 (733)
T ss_pred cCCCHH
Confidence 999974
No 121
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.08 E-value=4.1e-10 Score=89.61 Aligned_cols=132 Identities=24% Similarity=0.314 Sum_probs=81.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCcc
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 177 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~ 177 (308)
|+=.++-..+|+|||.-.+.-++...++.+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-------------------------------------------------- 33 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR-------------------------------------------------- 33 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--------------------------------------------------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc--------------------------------------------------
Confidence 445678889999999987777776665543
Q ss_pred ccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCC
Q psy12758 178 VVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLA 257 (308)
Q Consensus 178 ~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~ 257 (308)
.++|||.|||-++..+++.++... ++... .... .....+.-|-|.|.+.+..++.+ .....
T Consensus 34 -------~rvLvL~PTRvva~em~~aL~~~~----~~~~t---~~~~----~~~~g~~~i~vMc~at~~~~~~~-p~~~~ 94 (148)
T PF07652_consen 34 -------LRVLVLAPTRVVAEEMYEALKGLP----VRFHT---NARM----RTHFGSSIIDVMCHATYGHFLLN-PCRLK 94 (148)
T ss_dssp ---------EEEEESSHHHHHHHHHHTTTSS----EEEES---TTSS--------SSSSEEEEEHHHHHHHHHT-SSCTT
T ss_pred -------CeEEEecccHHHHHHHHHHHhcCC----cccCc---eeee----ccccCCCcccccccHHHHHHhcC-ccccc
Confidence 679999999999999988886543 21110 0000 01123456889999999888876 55578
Q ss_pred CCceEEechhhhcccCC---CHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 258 NCRFLVLDEADRMLDMG---FEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~---f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
+.+++|+||+|.. |.. +...+...-. .....+|++|||-|-
T Consensus 95 ~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~------~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 95 NYDVIIMDECHFT-DPTSIAARGYLRELAE------SGEAKVIFMTATPPG 138 (148)
T ss_dssp S-SEEEECTTT---SHHHHHHHHHHHHHHH------TTS-EEEEEESS-TT
T ss_pred CccEEEEeccccC-CHHHHhhheeHHHhhh------ccCeeEEEEeCCCCC
Confidence 9999999999963 431 2222222211 234679999999774
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.07 E-value=4.2e-10 Score=110.54 Aligned_cols=151 Identities=22% Similarity=0.255 Sum_probs=102.2
Q ss_pred CCCCcHHHHHHHhhHh----cC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 81 YDKPTPVQKYAIPVII----SG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~----~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
-..|+.+|..||..+. .| +-+++++.||||||..+ +.++.+|.+.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~--------------------------- 214 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW--------------------------- 214 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch---------------------------
Confidence 3478999999997655 45 35999999999999876 455666655432
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCC
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGC 235 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 235 (308)
..++|+|+-++.|+.|.++.+..+..... .+..+.+-.. ...+
T Consensus 215 ----------------------------~KRVLFLaDR~~Lv~QA~~af~~~~P~~~-~~n~i~~~~~--------~~s~ 257 (875)
T COG4096 215 ----------------------------VKRVLFLADRNALVDQAYGAFEDFLPFGT-KMNKIEDKKG--------DTSS 257 (875)
T ss_pred ----------------------------hheeeEEechHHHHHHHHHHHHHhCCCcc-ceeeeecccC--------Ccce
Confidence 16789999999999998888777654332 1111211111 1147
Q ss_pred eEEEECcHHHHHHHHcC-----CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 236 HLLVATPGRLVDMLERG-----KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~-----~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
+|.|+|...+...+... .+....++++||||||+=.- ..-+.|+.++. .-+++++||..+.
T Consensus 258 ~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~----~~~~~I~dYFd------A~~~gLTATP~~~ 323 (875)
T COG4096 258 EIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY----SEWSSILDYFD------AATQGLTATPKET 323 (875)
T ss_pred eEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----hhhHHHHHHHH------HHHHhhccCcccc
Confidence 89999999998887654 35566799999999998543 33446666652 1233348887653
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.00 E-value=6.2e-09 Score=103.45 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=109.7
Q ss_pred CCcHHHHHHHhhHhcC----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVIISG----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g----~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
..++-|+.+...+.+. +-.++.+.||||||.+|+=.+-..+...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-------------------------------- 245 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-------------------------------- 245 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC--------------------------------
Confidence 4567899999888765 6899999999999999977666555333
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh----hcCC
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD----LDRG 234 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~ 234 (308)
..+|||+|-.+|..|+.+.++... +.++..++++.+..+..+. ....
T Consensus 246 --------------------------kqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 246 --------------------------KQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred --------------------------CEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCC
Confidence 569999999999999999988876 4778888888876554433 2457
Q ss_pred CeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccC---C---CHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 235 CHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM---G---FEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 235 ~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~---~---f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+.|+|||=..+. ..|+++.++||||=|--.-. + +..++-....+ ..+.++|+-|||-+
T Consensus 297 ~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~-----~~~~pvvLgSATPS 360 (730)
T COG1198 297 ARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK-----KENAPVVLGSATPS 360 (730)
T ss_pred ceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH-----HhCCCEEEecCCCC
Confidence 899999953321 34789999999999943211 1 34444444444 34678999999954
No 124
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=1.7e-09 Score=108.03 Aligned_cols=130 Identities=20% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|.-.--++..|+ |+.+.||-|||+++.+|++-..+..
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~G-------------------------------- 126 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTG-------------------------------- 126 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcC--------------------------------
Confidence 343 78899988776776665 8999999999999999988765544
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+-|++++..||.+-++++..+....|+.+.++.++.+.... ...-.|||+
T Consensus 127 --------------------------kgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~er--r~aY~~DIt 178 (939)
T PRK12902 127 --------------------------KGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEER--KKNYACDIT 178 (939)
T ss_pred --------------------------CCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHH--HHhcCCCeE
Confidence 3478999999999999999999999999999998777655443 344579999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
.||+..| .++|..+. .....+.+.||||||.+|
T Consensus 179 YgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 179 YATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999988 44443321 235778999999999886
No 125
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.99 E-value=2e-09 Score=107.51 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=101.4
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|+ .|+++|.-..=++.. .-|+.+.||.|||+++.+|+.-..+..
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~G-------------------------------- 117 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALTG-------------------------------- 117 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhcC--------------------------------
Confidence 465 588999877655544 469999999999999999986544332
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+-|++++..||.+-++++..+....|+.+.++.++.+....... -.|||.
T Consensus 118 --------------------------~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DIt 169 (870)
T CHL00122 118 --------------------------KGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKN--YLKDIT 169 (870)
T ss_pred --------------------------CceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHh--cCCCCE
Confidence 3478999999999999999999999999999998887776554444 358999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
.+|..-| .++|+.+. .....+.+.||||||.+|
T Consensus 170 YgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 170 YVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999766 35554432 124678899999999886
No 126
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.87 E-value=2.1e-08 Score=102.98 Aligned_cols=158 Identities=20% Similarity=0.112 Sum_probs=88.4
Q ss_pred CCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHH
Q psy12758 83 KPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q 160 (308)
.|.|+|.++...++.. ..+++.-..|.|||.-..+.+-..+.....
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~-------------------------------- 199 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRA-------------------------------- 199 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCC--------------------------------
Confidence 5999999998776644 478999999999999886655444433211
Q ss_pred HHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhH--HhhcCCCeEE
Q psy12758 161 IYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQM--RDLDRGCHLL 238 (308)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~--~~l~~~~~Il 238 (308)
.++||+||+ .|+.|...++.+.. ++...++.++....... ..-....+++
T Consensus 200 ------------------------~rvLIVvP~-sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~v 251 (956)
T PRK04914 200 ------------------------ERVLILVPE-TLQHQWLVEMLRRF---NLRFSLFDEERYAEAQHDADNPFETEQLV 251 (956)
T ss_pred ------------------------CcEEEEcCH-HHHHHHHHHHHHHh---CCCeEEEcCcchhhhcccccCccccCcEE
Confidence 346666665 56666666554332 23333332221111000 0111246799
Q ss_pred EECcHHHHHHHH-cCCcCCCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 239 VATPGRLVDMLE-RGKIGLANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 239 V~TP~~L~~~l~-~~~~~l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
|++.+.+...-. ...+.-...+++|+||||++-.. +-.......+..+. .....++++|||-
T Consensus 252 I~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La---~~~~~~LLLTATP 315 (956)
T PRK04914 252 ICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA---EVIPGVLLLTATP 315 (956)
T ss_pred EEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh---hccCCEEEEEcCc
Confidence 999877654111 01122246789999999998631 11111122333331 1134589999994
No 127
>KOG1132|consensus
Probab=98.87 E-value=1.3e-08 Score=100.51 Aligned_cols=173 Identities=22% Similarity=0.281 Sum_probs=108.1
Q ss_pred CCcHHHHHHHhhHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhcCC-----CCC----------CCCCCCC-----
Q psy12758 83 KPTPVQKYAIPVIIS----GRDVMACAQTGSGKTAAFLVPILNQMYERGP-----LPT----------PPAGRGY----- 138 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~----g~d~lv~a~TGsGKTla~llpil~~l~~~~~-----~~~----------~~~~~~~----- 138 (308)
+|++.|...+..+++ +.+.++.+|||||||++.|...|.|...... ... +....+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 789999887766664 4789999999999999999888877654320 000 1101111
Q ss_pred --C-CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHH-----------HHHH
Q psy12758 139 --P-SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQI-----------YDEA 204 (308)
Q Consensus 139 --~-~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi-----------~~~~ 204 (308)
+ ......+++.|.+.|+....|+.+++++.... ++..||.....+|..- ...+
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~-------------vkmtVLgSReq~Cinpev~k~~~~~~~~~~C 167 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR-------------VKMTVLGSREQLCINPEVKKLEGNALQNHVC 167 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC-------------CceEEeecchhhccCHHHhhhhcchhhhhHH
Confidence 1 01123788899999999999999999997522 4444554444344320 1222
Q ss_pred HHhhhcCCCceEEEe-------------c---------------CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCC--c
Q psy12758 205 KKFAYRSQLRPCVVY-------------G---------------GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGK--I 254 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~-------------g---------------g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~--~ 254 (308)
+.+.... .|.++ + ..+.+...+.+...+||+.+-...|.+-.-++. +
T Consensus 168 ~k~~~~~---~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v 244 (945)
T KOG1132|consen 168 KKLVKSR---SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKV 244 (945)
T ss_pred Hhhcccc---cccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccc
Confidence 2222111 11111 0 122333345666778999999999988766655 5
Q ss_pred CCCCCceEEechhhhccc
Q psy12758 255 GLANCRFLVLDEADRMLD 272 (308)
Q Consensus 255 ~l~~~~~lViDEad~ll~ 272 (308)
++++ ..|||||||+|-+
T Consensus 245 ~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 245 DLKN-SIVIFDEAHNIED 261 (945)
T ss_pred cccc-cEEEEeccccHHH
Confidence 5544 5899999999865
No 128
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.86 E-value=2.8e-08 Score=100.23 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=48.0
Q ss_pred CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhh-cccCCCH-HHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 234 GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADR-MLDMGFE-PQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~-ll~~~f~-~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
...|-+.|.|.|+..+.+... |+.++++||||||. -++.+|. ..+..++... +.+-.+|++|||+..
T Consensus 139 ~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r----r~DLKiIimSATld~ 207 (845)
T COG1643 139 RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR----RDDLKLIIMSATLDA 207 (845)
T ss_pred CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc----CCCceEEEEecccCH
Confidence 457999999999999988776 89999999999994 2332221 1223333332 445789999999864
No 129
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.83 E-value=6.2e-08 Score=100.01 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=97.0
Q ss_pred CCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
++.++|.+.+.-+. .|.+.|++-..|.|||+..+.. +..+.....
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~------------------------------ 217 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRG------------------------------ 217 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcC------------------------------
Confidence 67899999987664 5788999999999999975433 333332211
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh---hcCCC
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD---LDRGC 235 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~ 235 (308)
.....|||||. .+..+..+++.+++. .+++..++|.......... .....
T Consensus 218 ------------------------~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~ 270 (1033)
T PLN03142 218 ------------------------ITGPHMVVAPK-STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKF 270 (1033)
T ss_pred ------------------------CCCCEEEEeCh-HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCC
Confidence 00236778884 556777777777763 3556666665443322221 13457
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+|+|+|++.+..... .+.--..++|||||||++-.. ...+...+..+. ....+++|+|-
T Consensus 271 dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~-----a~~RLLLTGTP 329 (1033)
T PLN03142 271 DVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS-----TNYRLLITGTP 329 (1033)
T ss_pred CcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHhh-----cCcEEEEecCC
Confidence 999999988765322 111224579999999998653 334455555542 23357889994
No 130
>KOG0920|consensus
Probab=98.83 E-value=3.4e-08 Score=99.63 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=97.7
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHH
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDE 164 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~ 164 (308)
+..+...+.++.+.+.+++++.||+|||.-.---+|......+.
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~------------------------------------ 218 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGA------------------------------------ 218 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCC------------------------------------
Confidence 56677888889999999999999999998766666666544431
Q ss_pred HHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHH-hhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcH
Q psy12758 165 AKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKK-FAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPG 243 (308)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 243 (308)
..++++--|.|--|..+++.+.. .+...+-.+..-.+.... ......++.||-|
T Consensus 219 -------------------~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtG 273 (924)
T KOG0920|consen 219 -------------------ACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTG 273 (924)
T ss_pred -------------------CCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHH
Confidence 12344555776555555544422 232233222111111111 1123679999999
Q ss_pred HHHHHHHcCCcCCCCCceEEechhhhc-ccCCCHHH-HHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 244 RLVDMLERGKIGLANCRFLVLDEADRM-LDMGFEPQ-IRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 244 ~L~~~l~~~~~~l~~~~~lViDEad~l-l~~~f~~~-l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
-|+..+..... +.++.++|+||+|.= .+.+|.-. ++.++.. .++-++|+||||+..+
T Consensus 274 vLLr~L~~~~~-l~~vthiivDEVHER~i~~DflLi~lk~lL~~-----~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 274 VLLRRLQSDPT-LSGVTHIIVDEVHERSINTDFLLILLKDLLPR-----NPDLKVILMSATLDAE 332 (924)
T ss_pred HHHHHhccCcc-cccCceeeeeeEEEccCCcccHHHHHHHHhhh-----CCCceEEEeeeecchH
Confidence 99999987443 789999999999943 23333222 2222222 4678999999998743
No 131
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.77 E-value=3.9e-08 Score=99.94 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
.++.+.++||||||.+|+-.|+.....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~ 86 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK 86 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999888776543
No 132
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.68 E-value=6e-08 Score=98.62 Aligned_cols=203 Identities=21% Similarity=0.134 Sum_probs=108.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHhhHhc--------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy12758 73 TNNIALARYDKPTPVQKYAIPVIIS--------GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKV 144 (308)
Q Consensus 73 ~~~L~~~~~~~pt~iQ~~~ip~i~~--------g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~ 144 (308)
.+.+.+..-..-..+|-+|+..+.+ |-=+|-.|.||+|||++=.=.+ ..+.. ...
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd----------------~~~ 460 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD----------------DKQ 460 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC----------------CCC
Confidence 3444433334456899999988774 2235777999999999843322 22221 233
Q ss_pred cccccccccchHHHHHHHHHHHHHHhhhcCCcccccccccccccccc---CCHHhHHHHHHHHHH---hhhcC-----CC
Q psy12758 145 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLA---PTRELATQIYDEAKK---FAYRS-----QL 213 (308)
Q Consensus 145 ~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~---PtreL~~qi~~~~~~---~~~~~-----~~ 213 (308)
+.|..|+.--|.|--|-.+.+++-..... -..-|++ -+++|-+...+.... -+... .-
T Consensus 461 g~RfsiALGLRTLTLQTGda~r~rL~L~~-----------ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e 529 (1110)
T TIGR02562 461 GARFAIALGLRSLTLQTGHALKTRLNLSD-----------DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAE 529 (1110)
T ss_pred CceEEEEccccceeccchHHHHHhcCCCc-----------cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcc
Confidence 56788888888888888888777431111 1112222 233443321111110 01000 00
Q ss_pred ce---EEEecC-CchhHhHHhhcC--------CCeEEEECcHHHHHHHH--cC-CcCCC--C--CceEEechhhhcccCC
Q psy12758 214 RP---CVVYGG-SNVGDQMRDLDR--------GCHLLVATPGRLVDMLE--RG-KIGLA--N--CRFLVLDEADRMLDMG 274 (308)
Q Consensus 214 ~~---~~~~gg-~~~~~~~~~l~~--------~~~IlV~TP~~L~~~l~--~~-~~~l~--~--~~~lViDEad~ll~~~ 274 (308)
.- ..-|.| .....-...+.+ ...|+|||+..++.... ++ ...+. . -+.|||||+|.+ |..
T Consensus 530 ~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~ 608 (1110)
T TIGR02562 530 GQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPE 608 (1110)
T ss_pred cCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHH
Confidence 01 122333 222222222211 35799999999988763 21 11111 1 257999999954 433
Q ss_pred CHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 275 FEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 275 f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
....|..++..+... +..++++|||+|+.+
T Consensus 609 ~~~~L~rlL~w~~~l---G~~VlLmSATLP~~l 638 (1110)
T TIGR02562 609 DLPALLRLVQLAGLL---GSRVLLSSATLPPAL 638 (1110)
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEeCCCCHHH
Confidence 334456665544322 567999999999754
No 133
>KOG0951|consensus
Probab=98.66 E-value=4.2e-08 Score=99.88 Aligned_cols=151 Identities=19% Similarity=0.312 Sum_probs=107.0
Q ss_pred CCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...++|.++++.+.+. .++++.+|+|||||.+.-+.++. ..
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~----------------------------------- 1184 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---PD----------------------------------- 1184 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---Cc-----------------------------------
Confidence 3389999999998866 67999999999999999888875 10
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHH-HHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEE
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEA-KKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVA 240 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~-~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~ 240 (308)
...++++++|..+.+...+..+ +++....|+++..+.|.....-... ...+|+|+
T Consensus 1185 ---------------------~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~---~~~~vii~ 1240 (1674)
T KOG0951|consen 1185 ---------------------TIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLL---QKGQVIIS 1240 (1674)
T ss_pred ---------------------cceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHh---hhcceEEe
Confidence 1155788888888877665544 4555566888888877666544332 34689999
Q ss_pred CcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHH------HHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 241 TPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEP------QIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 241 TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~------~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
||+++..+ + ....+++.|.||+|.+.+.. +. -++.|-.++ .+..+++.+|..+.+
T Consensus 1241 tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q~----~k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1241 TPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQL----EKKIRVVALSSSLAN 1301 (1674)
T ss_pred chhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHHH----HhheeEEEeehhhcc
Confidence 99998655 2 56788999999999776432 11 145555555 445677877766543
No 134
>KOG2340|consensus
Probab=98.66 E-value=6.7e-08 Score=90.82 Aligned_cols=180 Identities=21% Similarity=0.228 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccC-CCch--hHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQT-GSGK--TAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~T-GsGK--Tla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
...|+.|.+.+....+.+|++..-.| +.|+ +-.|.+-+|+++++.. .+|+-+.+-++
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r--------------------~~IL~Nn~r~~ 274 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTR--------------------DLILGNNRRLA 274 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHH--------------------HHHhcchHhhh
Confidence 47799999999999999998754332 2344 5668899999988763 34444444433
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCc---------e--------------
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLR---------P-------------- 215 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~---------~-------------- 215 (308)
.|...+ ......-.....+|++|||||+|+-|..+.+.+..+..+..-. .
T Consensus 275 Sqk~g~-------~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~ 347 (698)
T KOG2340|consen 275 SQKEGE-------NPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPR 347 (698)
T ss_pred hhhcCC-------CCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCC
Confidence 331110 0000111122344778888888888888777776663322110 0
Q ss_pred --------EEEecCCchhHh--------HHhh---cCCCeEEEECcHHHHHHHHcCC------cCCCCCceEEechhhhc
Q psy12758 216 --------CVVYGGSNVGDQ--------MRDL---DRGCHLLVATPGRLVDMLERGK------IGLANCRFLVLDEADRM 270 (308)
Q Consensus 216 --------~~~~gg~~~~~~--------~~~l---~~~~~IlV~TP~~L~~~l~~~~------~~l~~~~~lViDEad~l 270 (308)
.++.|.++.... .-.| -...|||||.|--|..++.+.. -.|+.+.++|||.||.|
T Consensus 348 ~~kP~D~~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~ 427 (698)
T KOG2340|consen 348 AKKPEDFEELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIM 427 (698)
T ss_pred CCCchhHHHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHH
Confidence 011122211111 0011 1357999999999988887321 22788999999999999
Q ss_pred ccCCCHHHHHHHHHhcCCC
Q psy12758 271 LDMGFEPQIRCIVQENGMP 289 (308)
Q Consensus 271 l~~~f~~~l~~i~~~l~~~ 289 (308)
+..++ +.+..|+.++...
T Consensus 428 l~QNw-Ehl~~ifdHLn~~ 445 (698)
T KOG2340|consen 428 LMQNW-EHLLHIFDHLNLQ 445 (698)
T ss_pred HHhhH-HHHHHHHHHhhcC
Confidence 88765 6788888887544
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=2.8e-07 Score=92.20 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=102.8
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|.-.--.+..|+ |+.+.||-|||++..+|+.-..+..
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~G-------------------------------- 119 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTG-------------------------------- 119 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcC--------------------------------
Confidence 354 78999988887777775 8999999999999999987654443
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..+-|++...-||..=.+++..+...+|+.+.+...+.+....... -.|||.
T Consensus 120 --------------------------kgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DIt 171 (925)
T PRK12903 120 --------------------------KGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREA--YACDIT 171 (925)
T ss_pred --------------------------CceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHh--ccCCCe
Confidence 3367888999999999999999999999999988776665544333 358999
Q ss_pred EECcHHH-HHHHHcCCc------CCCCCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGKI------GLANCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~~------~l~~~~~lViDEad~ll 271 (308)
.||..-| .++|+.+.. ....+.|.||||+|.+|
T Consensus 172 YgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 172 YSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999887 556664421 24678899999999887
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=98.58 E-value=1.8e-07 Score=92.44 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=98.5
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCC
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 132 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g-----~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~ 132 (308)
..|..|+.+.. .++..+|.-..=.+|+|+|+.||....+| |.-++ +..|+|||+..|-- .+.+..
T Consensus 137 es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsLki-sEala~------- 206 (1518)
T COG4889 137 ESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSLKI-SEALAA------- 206 (1518)
T ss_pred cCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHHHH-HHHHhh-------
Confidence 34567877755 56777776667789999999999999876 23333 44799999986532 222211
Q ss_pred CCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCC
Q psy12758 133 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQ 212 (308)
Q Consensus 133 ~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~ 212 (308)
.++|+|+|+..|..|..+++..-. ...
T Consensus 207 ----------------------------------------------------~~iL~LvPSIsLLsQTlrew~~~~-~l~ 233 (1518)
T COG4889 207 ----------------------------------------------------ARILFLVPSISLLSQTLREWTAQK-ELD 233 (1518)
T ss_pred ----------------------------------------------------hheEeecchHHHHHHHHHHHhhcc-Ccc
Confidence 457777888877777665543321 223
Q ss_pred CceEEEecCCchhH--------------------hH-----HhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechh
Q psy12758 213 LRPCVVYGGSNVGD--------------------QM-----RDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEA 267 (308)
Q Consensus 213 ~~~~~~~gg~~~~~--------------------~~-----~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEa 267 (308)
++...++.+..... -. +...++--|+++|...+...-+.....+..++++|.|||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 44444433221111 01 112345679999999988777666677899999999999
Q ss_pred hhccc
Q psy12758 268 DRMLD 272 (308)
Q Consensus 268 d~ll~ 272 (308)
|+--.
T Consensus 314 HRTtG 318 (1518)
T COG4889 314 HRTTG 318 (1518)
T ss_pred hcccc
Confidence 98654
No 137
>KOG0922|consensus
Probab=98.51 E-value=1.3e-06 Score=84.55 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=46.0
Q ss_pred CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 234 GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
...|...|-|.|+.-+-.... |++.+++||||||.=-= .-+.+-.++..+-. ...+-.+|++|||+.-
T Consensus 140 ~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl--~TDiLlGlLKki~~-~R~~LklIimSATlda 207 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL--HTDILLGLLKKILK-KRPDLKLIIMSATLDA 207 (674)
T ss_pred ceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh--HHHHHHHHHHHHHh-cCCCceEEEEeeeecH
Confidence 357999999999887665554 78999999999993210 12333344443311 1345689999999853
No 138
>KOG0926|consensus
Probab=98.50 E-value=2.5e-07 Score=90.79 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=43.4
Q ss_pred CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCC----CC-----CCceEEEEeecC
Q psy12758 234 GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMP----RT-----GDRQTLMFSATF 303 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~----~~-----~~~q~i~~SATl 303 (308)
...|.+.|-|-|+.-+.+..+ |.....+||||||.=.- +-+.+--++.++-.. .. ..-..|+||||+
T Consensus 349 ~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATL 424 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATL 424 (1172)
T ss_pred CceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeE
Confidence 357999999999988876654 78899999999994211 223333333332100 01 123589999997
No 139
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.42 E-value=1.1e-06 Score=76.10 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=50.4
Q ss_pred CcHHHHHHHhhHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 84 PTPVQKYAIPVIISGRD-VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~d-~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
..+-|.+|+..++...+ .+|.||+|||||.... -++..+..... ........++++.++++.-++++.
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~----------~~~~~~~~~il~~~~sN~avd~~~ 70 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK----------SRSADRGKKILVVSPSNAAVDNIL 70 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-----------------HCCCSS-EEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh----------hhhhhccccceeecCCchhHHHHH
Confidence 46889999999999998 9999999999996433 34444421000 001123467999999999999999
Q ss_pred HHHHH
Q psy12758 163 DEAKK 167 (308)
Q Consensus 163 ~~~~~ 167 (308)
+.+.+
T Consensus 71 ~~l~~ 75 (236)
T PF13086_consen 71 ERLKK 75 (236)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99988
No 140
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=5.3e-07 Score=91.45 Aligned_cols=127 Identities=21% Similarity=0.190 Sum_probs=99.9
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|.++|.-.--.+..|+ |+.+.||-|||++..+|+.-..+...
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~----------------------------------- 180 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGR----------------------------------- 180 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCC-----------------------------------
Confidence 58888887776777776 88999999999999999877665543
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
-+-|++..--||..=.+++..+....|+.+.++..+.+... +...-.|||..||.
T Consensus 181 -----------------------gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~--Rr~aY~~DItYgTn 235 (1025)
T PRK12900 181 -----------------------GVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEE--RREQYLCDITYGTN 235 (1025)
T ss_pred -----------------------CcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHH--HHHhCCCcceecCC
Confidence 26678888999999999999999999999999866555443 34445799999998
Q ss_pred HHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 243 GRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 243 ~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
.-| .++|+.+. .....+.|.||||+|.+|
T Consensus 236 ~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 236 NEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 877 55665432 124678899999999886
No 141
>KOG1123|consensus
Probab=98.40 E-value=2.6e-07 Score=86.49 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=101.7
Q ss_pred CCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 82 DKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
..++|+|.+++..++.+ +.-||.-|.|+|||+.-+-++.. +
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i----------------------------------- 344 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I----------------------------------- 344 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-----------------------------------
Confidence 36789999999998844 68899999999999875443321 0
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..++||||.+---++|..++++.++--..-.++.+...... ....++.|+
T Consensus 345 -------------------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvv 394 (776)
T KOG1123|consen 345 -------------------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVV 394 (776)
T ss_pred -------------------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEE
Confidence 15689999888889999999998876555555555443322 234578999
Q ss_pred EECcHHHHHHHHcC--------CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 239 VATPGRLVDMLERG--------KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 239 V~TP~~L~~~l~~~--------~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
|+|..++..--++. .+.-..-.++|+||+|.+-..=|..-+.-+-.++ -+.++||+-+
T Consensus 395 vsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc---------KLGLTATLvR 460 (776)
T KOG1123|consen 395 VTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC---------KLGLTATLVR 460 (776)
T ss_pred EEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh---------hccceeEEee
Confidence 99986654321110 0112345689999999887665655554444444 5778898744
No 142
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.37 E-value=2.7e-06 Score=88.30 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=68.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCC-CeEEEECcHHHHHHHHcC-CcCCC-CCce
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRG-CHLLVATPGRLVDMLERG-KIGLA-NCRF 261 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~L~~~l~~~-~~~l~-~~~~ 261 (308)
|.++||+=.++|-.|+.+.+..+........ ...+..+-.+.+..+ -.|+|+|-.+|...+... ...+. +=-+
T Consensus 304 ~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~iv 379 (962)
T COG0610 304 PKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVV 379 (962)
T ss_pred CeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEE
Confidence 7788899999999999999888875543322 223333333444433 479999999998888664 11122 2236
Q ss_pred EEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 262 LVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 262 lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
+|+||||+--.......|...+. +...++||.|
T Consensus 380 vI~DEaHRSQ~G~~~~~~~~~~~--------~a~~~gFTGT 412 (962)
T COG0610 380 VIIDEAHRSQYGELAKLLKKALK--------KAIFIGFTGT 412 (962)
T ss_pred EEEechhhccccHHHHHHHHHhc--------cceEEEeeCC
Confidence 89999998654333333333332 3679999988
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.29 E-value=1.5e-06 Score=88.40 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=97.6
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|.++|.-.--.+..|+ |+.+.||-|||++..+|+.-..+...
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~Gk----------------------------------- 211 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGN----------------------------------- 211 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCC-----------------------------------
Confidence 57788877666666665 89999999999999999887766553
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
-+-|++..--||..=++++..+....|+.+.++... ......+...-.|||..+|.
T Consensus 212 -----------------------gVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~-~~~~~~rr~aY~~DItYgTn 267 (1112)
T PRK12901 212 -----------------------GVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH-QPNSEARRKAYNADITYGTN 267 (1112)
T ss_pred -----------------------CcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC-CCCHHHHHHhCCCcceecCC
Confidence 266788889999999999999999999999887542 22233344445799999998
Q ss_pred HHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 243 GRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 243 ~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
.-| .++|+.+. .....+.|.||||+|.+|
T Consensus 268 ~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 268 NEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 877 55665432 124668899999999886
No 144
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.29 E-value=3.3e-06 Score=71.96 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=28.5
Q ss_pred CcHHHHHHHhhHhcCC--CEEEEccCCCchhHHhHHHHHHHH
Q psy12758 84 PTPVQKYAIPVIISGR--DVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~--d~lv~a~TGsGKTla~llpil~~l 123 (308)
.++-|.+++..++... -.++.++.|||||.+ +-.+...+
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~ 42 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEAL 42 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHH
Confidence 5788999999997553 477889999999975 33344444
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.27 E-value=6.5e-06 Score=82.21 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=71.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh---h-cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD---L-DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||++|...|..|+.+.++.... +..+..++++.+..+..+. + ...++|+|||-..+ ...++++.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-------FaP~~~Lg 259 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-------FAPVEDLG 259 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-------EeccCCCC
Confidence 5699999999999999999987653 2457778888776544432 2 34589999995322 23478999
Q ss_pred eEEechhhhccc-C--C---CHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 261 FLVLDEADRMLD-M--G---FEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 261 ~lViDEad~ll~-~--~---f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
++||||=|.-.- . + +..++-....+ ..+..+|+-|||-+
T Consensus 260 LIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-----~~~~~lvLgSaTPS 304 (665)
T PRK14873 260 LVAIWDDGDDLLAEPRAPYPHAREVALLRAH-----QHGCALLIGGHART 304 (665)
T ss_pred EEEEEcCCchhhcCCCCCCccHHHHHHHHHH-----HcCCcEEEECCCCC
Confidence 999999884321 1 1 12223223333 34678999999965
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.25 E-value=9.8e-06 Score=76.54 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCeEEEECcHHHHHHHHc------CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCC--------------
Q psy12758 234 GCHLLVATPGRLVDMLER------GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGD-------------- 293 (308)
Q Consensus 234 ~~~IlV~TP~~L~~~l~~------~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~-------------- 293 (308)
.+|||||+|=-|...+.. ....|+++.++|+|.||.|+..+ .+.+..++.+++......
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 579999999999888874 22338999999999999877665 578888888886553211
Q ss_pred ------ceEEEEeecCCCCC
Q psy12758 294 ------RQTLMFSATFPKEI 307 (308)
Q Consensus 294 ------~q~i~~SATl~~~v 307 (308)
||+|+||+...+++
T Consensus 210 g~a~~~RQtii~S~~~~pe~ 229 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEI 229 (442)
T ss_pred CcchheeEeEEecCCCCHHH
Confidence 59999999887653
No 147
>KOG0385|consensus
Probab=98.20 E-value=2.4e-05 Score=76.88 Aligned_cols=153 Identities=22% Similarity=0.293 Sum_probs=93.9
Q ss_pred CCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.++++|.+.+.-+. .|-+.|+.-..|-|||+-- +.+|..+.....
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~------------------------------ 215 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG------------------------------ 215 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC------------------------------
Confidence 67788888765544 6778999999999999864 333333332111
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh-h--cCCC
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD-L--DRGC 235 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-l--~~~~ 235 (308)
..+| -||++|---|.+ ..+++++++ .++++++++|.......... + ....
T Consensus 216 -----------------------~~GP-fLVi~P~StL~N-W~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~f 268 (971)
T KOG0385|consen 216 -----------------------IPGP-FLVIAPKSTLDN-WMNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRF 268 (971)
T ss_pred -----------------------CCCC-eEEEeeHhhHHH-HHHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCC
Confidence 0012 366777555533 445555555 35778888887755444322 2 3478
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
+|+|+|.+..+.- ...+.--.-+||||||||++-+.. ..+..+++.+... -.++++.|
T Consensus 269 dV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~-----nrLLlTGT 326 (971)
T KOG0385|consen 269 DVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTD-----NRLLLTGT 326 (971)
T ss_pred ceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhccc-----ceeEeeCC
Confidence 9999999776432 111111244799999999997763 4455666666332 24555666
No 148
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.15 E-value=5.6e-06 Score=82.11 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~ 122 (308)
-++=|.+.||||||.+|+--|...
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeL 98 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFEL 98 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHH
Confidence 478899999999999998777654
No 149
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.15 E-value=3.5e-06 Score=71.94 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
..-|.-|..++.+++...-+++.++.|||||+..+...++.+.+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g 47 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG 47 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 345789999999999888899999999999999999999888653
No 150
>KOG0952|consensus
Probab=98.12 E-value=3.2e-07 Score=92.25 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=106.5
Q ss_pred CCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...|+|...+-.+..- .++++-+|||+|||++|.+.+...+...+.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~--------------------------------- 973 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG--------------------------------- 973 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC---------------------------------
Confidence 4456777777665543 689999999999999999998877654432
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEEC
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~T 241 (308)
.++++++|..+|.....+.+.......|+++.-+.|.....- ... ..++|+|+|
T Consensus 974 -----------------------~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~--~~v-~~~~~~itt 1027 (1230)
T KOG0952|consen 974 -----------------------SKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDV--KAV-READIVITT 1027 (1230)
T ss_pred -----------------------ccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCCh--hhe-ecCceEEcc
Confidence 568889999888888777777666666888888887766542 111 247899999
Q ss_pred cHHHHHHHHcCC--cCCCCCceEEechhhhcccCCCHHHHHHHHHhcC
Q psy12758 242 PGRLVDMLERGK--IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENG 287 (308)
Q Consensus 242 P~~L~~~l~~~~--~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~ 287 (308)
|++.....+++. --+.+++.+|+||.|.+. .++++-++.+....+
T Consensus 1028 pek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 1028 PEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSRMN 1074 (1230)
T ss_pred cccccCccccccchhhhccccceeeccccccc-CCCcceEEEEeeccc
Confidence 999988776432 337899999999999654 456666666655443
No 151
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.11 E-value=1.5e-05 Score=74.23 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=45.9
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEe
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVL 264 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lVi 264 (308)
..++++++...|...+...+....... .....+..+..+...+..........++|||
T Consensus 32 ~~~~~l~~n~~l~~~l~~~l~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~Dviiv 89 (352)
T PF09848_consen 32 KKVLYLCGNHPLRNKLREQLAKKYNPK----------------------LKKSDFRKPTSFINNYSESDKEKNKYDVIIV 89 (352)
T ss_pred CceEEEEecchHHHHHHHHHhhhcccc----------------------hhhhhhhhhHHHHhhcccccccCCcCCEEEE
Confidence 456778888888777766665533000 0112233333333322222234578899999
Q ss_pred chhhhcccCC-------CHHHHHHHHHh
Q psy12758 265 DEADRMLDMG-------FEPQIRCIVQE 285 (308)
Q Consensus 265 DEad~ll~~~-------f~~~l~~i~~~ 285 (308)
||||+|.+.+ ...++..++..
T Consensus 90 DEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 90 DEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ehhHhhhhccccccccccHHHHHHHHhc
Confidence 9999999842 24667777764
No 152
>KOG0925|consensus
Probab=98.08 E-value=4e-05 Score=71.96 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=43.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
..|...+.++...+-|++..----+..+.+.+..+.+++-+++.+.||||||.-.
T Consensus 25 Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 25 NPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred CCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccC
Confidence 4599999999999988876544445666667777888889999999999999753
No 153
>KOG0390|consensus
Probab=98.08 E-value=0.00011 Score=73.60 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=101.0
Q ss_pred CCcHHHHHHHhhHhc---C-------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccc
Q psy12758 83 KPTPVQKYAIPVIIS---G-------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 152 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~---g-------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (308)
.++|+|.+.+..+.. | ...|+.-..|+|||+-. ++.+..++...+.+.+ ..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~-----------~~------- 298 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKP-----------LI------- 298 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccc-----------cc-------
Confidence 447999999977652 2 35778889999999965 5566666655431111 00
Q ss_pred cchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCch-hH-hHHh
Q psy12758 153 PTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNV-GD-QMRD 230 (308)
Q Consensus 153 pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~-~~-~~~~ 230 (308)
.++|||+| ..|+...++++.++.....+....++|.... .. ....
T Consensus 299 --------------------------------~k~lVV~P-~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~si 345 (776)
T KOG0390|consen 299 --------------------------------NKPLVVAP-SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSI 345 (776)
T ss_pred --------------------------------cccEEEcc-HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHH
Confidence 45777777 4566667777777766556777777777764 00 0000
Q ss_pred h-----cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 231 L-----DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 231 l-----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+ .-..-|++-+.+.+.+.++. +....+.+||+||.|++-+. ...+...+..+. -++.|++|.|.
T Consensus 346 l~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~--~s~~~kaL~~l~-----t~rRVLLSGTp 414 (776)
T KOG0390|consen 346 LFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS--DSLTLKALSSLK-----TPRRVLLTGTP 414 (776)
T ss_pred HHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--hhHHHHHHHhcC-----CCceEEeeCCc
Confidence 1 01235778888877655443 33467789999999998765 344555556653 23466779985
No 154
>KOG0923|consensus
Probab=98.01 E-value=2.6e-05 Score=75.55 Aligned_cols=65 Identities=25% Similarity=0.225 Sum_probs=42.2
Q ss_pred CeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhc-ccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 235 CHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRM-LDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 235 ~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~l-l~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
.-|=+.|-|+|+.-+-.. .+|.+.+++||||||.= +. -+.+-.|+..+- ...++-..++.|||+.
T Consensus 356 TvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~---TDILfgLvKDIa-r~RpdLKllIsSAT~D 421 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLH---TDILFGLVKDIA-RFRPDLKLLISSATMD 421 (902)
T ss_pred eeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhh---hhHHHHHHHHHH-hhCCcceEEeeccccC
Confidence 347799999998755433 34788999999999942 21 222333333321 1145778999999985
No 155
>KOG0924|consensus
Probab=98.01 E-value=5.1e-05 Score=73.85 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=40.3
Q ss_pred CeEEEECcHHHHHH-HHcCCcCCCCCceEEechhhhc-ccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 235 CHLLVATPGRLVDM-LERGKIGLANCRFLVLDEADRM-LDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 235 ~~IlV~TP~~L~~~-l~~~~~~l~~~~~lViDEad~l-l~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
..|-..|-|.|+.- |..+ .|.+..++|+||||.- ++.. ....++.++.. ..+-.+|+.|||+.
T Consensus 446 T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~lar-----RrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-----RRDLKLIVTSATMD 511 (1042)
T ss_pred eeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHHHh-----hccceEEEeecccc
Confidence 45888999988763 3333 2678889999999943 2211 11223333333 34678999999985
No 156
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.99 E-value=1.4e-05 Score=70.27 Aligned_cols=88 Identities=26% Similarity=0.415 Sum_probs=68.6
Q ss_pred ccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecC-CchhHhHHhhc-CCCeEEEECcHHHHHHHHcCCcCCC
Q psy12758 180 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGG-SNVGDQMRDLD-RGCHLLVATPGRLVDMLERGKIGLA 257 (308)
Q Consensus 180 ~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~-~~~~IlV~TP~~L~~~l~~~~~~l~ 257 (308)
.....|.+|||+.+---|..+.+.++.+... +..+.-++.- ....++...+. ..++|.||||+||..+++.+.+.++
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 3455699999999988888888888887411 1233333433 36778888886 4789999999999999999999999
Q ss_pred CCceEEechhh
Q psy12758 258 NCRFLVLDEAD 268 (308)
Q Consensus 258 ~~~~lViDEad 268 (308)
++++||||--|
T Consensus 201 ~l~~ivlD~s~ 211 (252)
T PF14617_consen 201 NLKRIVLDWSY 211 (252)
T ss_pred cCeEEEEcCCc
Confidence 99999999754
No 157
>PRK10536 hypothetical protein; Provisional
Probab=97.98 E-value=3.7e-05 Score=67.69 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
.++..-+..|...+..+.++.-+++.+++|||||+..+...++.+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45666788999999999888889999999999999888777766644
No 158
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.98 E-value=6.4e-05 Score=74.51 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.6
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.++|+.|+-..+..+-.++.+++|||||...
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v 184 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV 184 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 5899999999999999999999999999764
No 159
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.96 E-value=0.00022 Score=63.89 Aligned_cols=172 Identities=14% Similarity=0.118 Sum_probs=98.5
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh----------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCC
Q psy12758 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVII----------SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 132 (308)
Q Consensus 63 f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~----------~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~ 132 (308)
+-.+.|++.++.. | ..+..|.+++-.+. .+..+++--.||.||--...--|+...+...
T Consensus 23 ~y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----- 91 (303)
T PF13872_consen 23 TYRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----- 91 (303)
T ss_pred CcccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-----
Confidence 3455666655432 2 34677877764433 2467888889999997765555555554432
Q ss_pred CCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCC
Q psy12758 133 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQ 212 (308)
Q Consensus 133 ~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~ 212 (308)
.++|++..+..|.....+.++.++.. .
T Consensus 92 ----------------------------------------------------~r~vwvS~s~dL~~Da~RDl~DIG~~-~ 118 (303)
T PF13872_consen 92 ----------------------------------------------------KRAVWVSVSNDLKYDAERDLRDIGAD-N 118 (303)
T ss_pred ----------------------------------------------------CceEEEECChhhhhHHHHHHHHhCCC-c
Confidence 45677777777777777777766543 2
Q ss_pred CceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcC---CcCC--------CC-CceEEechhhhcccCCC-----
Q psy12758 213 LRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERG---KIGL--------AN-CRFLVLDEADRMLDMGF----- 275 (308)
Q Consensus 213 ~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~---~~~l--------~~-~~~lViDEad~ll~~~f----- 275 (308)
+.+..+..- ... .. ..-.-.||.+|...|..--..+ ...+ .+ =.+||+||+|.+-+..-
T Consensus 119 i~v~~l~~~-~~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 194 (303)
T PF13872_consen 119 IPVHPLNKF-KYG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKP 194 (303)
T ss_pred ccceechhh-ccC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccc
Confidence 222222110 000 00 1113468999988876654321 1111 11 13799999999876532
Q ss_pred ---HHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 276 ---EPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 276 ---~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
+..+..+-+.+ + +.+++.+|||-..+.
T Consensus 195 sk~g~avl~LQ~~L----P-~ARvvY~SATgasep 224 (303)
T PF13872_consen 195 SKTGIAVLELQNRL----P-NARVVYASATGASEP 224 (303)
T ss_pred cHHHHHHHHHHHhC----C-CCcEEEecccccCCC
Confidence 12334444444 2 456999999986654
No 160
>KOG1133|consensus
Probab=97.95 E-value=8.3e-05 Score=72.53 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCcHHHHHHHhh----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 83 KPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 83 ~pt~iQ~~~ip~----i~~g~d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
+|+.||...+.. +-.|+=-|..+|||||||+..+...+.|+...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 789999887755 44789889999999999999999999999765
No 161
>KOG0387|consensus
Probab=97.93 E-value=0.00017 Score=71.35 Aligned_cols=166 Identities=15% Similarity=0.229 Sum_probs=95.8
Q ss_pred CccC-CCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 62 QFDD-IQMTEIITNNIALARYDKPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 62 ~f~~-l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
+++. +.+|..|-..| .++|+..+.-+. +++.-|+--..|=|||.-.+ ..|..+....
T Consensus 191 ~~~~~~~vPg~I~~~L--------f~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~--------- 252 (923)
T KOG0387|consen 191 KLEGGFKVPGFIWSKL--------FPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSG--------- 252 (923)
T ss_pred cccccccccHHHHHHh--------hHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcc---------
Confidence 3444 55666665554 589999886655 45778888999999996532 2222222111
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
+....+|||||.- +..|..+++..+.. .+++.
T Consensus 253 ---------------------------------------------k~~~paLIVCP~T-ii~qW~~E~~~w~p--~~rv~ 284 (923)
T KOG0387|consen 253 ---------------------------------------------KLTKPALIVCPAT-IIHQWMKEFQTWWP--PFRVF 284 (923)
T ss_pred ---------------------------------------------cccCceEEEccHH-HHHHHHHHHHHhCc--ceEEE
Confidence 0013478888853 44566666666653 45666
Q ss_pred EEecCCch--------hHhHHh-----hcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHH
Q psy12758 217 VVYGGSNV--------GDQMRD-----LDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIV 283 (308)
Q Consensus 217 ~~~gg~~~--------~~~~~~-----l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~ 283 (308)
.+||.... ...... ...+.+|+|+|...+.-. ...+.--.-.|+|+||.|++-+.+- ++..-+
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns--~islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNS--KISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCcc--HHHHHH
Confidence 77664441 111111 123567999998655321 1222223457999999999988752 344444
Q ss_pred HhcCCCCCCCceEEEEeec
Q psy12758 284 QENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 284 ~~l~~~~~~~~q~i~~SAT 302 (308)
..++ .++.|++|.|
T Consensus 361 kki~-----T~~RiILSGT 374 (923)
T KOG0387|consen 361 KKIR-----TVHRIILSGT 374 (923)
T ss_pred Hhcc-----ccceEEeeCc
Confidence 4442 3456667887
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.87 E-value=2.7e-05 Score=77.80 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEe
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVL 264 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lVi 264 (308)
.++++++..+.|+.++...++...-. ++. .|...... .. -....+-+++..+.|..+. .-.+++.++|||
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i--~~~~~~rLivqIdSL~R~~---~~~l~~yDvVII 148 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-II--DGRPYDRLIVQIDSLHRLD---GSLLDRYDVVII 148 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-cc--cccccCeEEEEehhhhhcc---cccccccCEEEE
Confidence 55888888889988888887764321 111 11111110 00 0113456666666665443 224677899999
Q ss_pred chhhhcccCCCHHHHHH---HHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 265 DEADRMLDMGFEPQIRC---IVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 265 DEad~ll~~~f~~~l~~---i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
||+...+..=|.+.|+. +++.+...-.....+|++-||+.+.
T Consensus 149 DEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 149 DEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred ehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 99998887644443332 2222111113356788889998753
No 163
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.87 E-value=0.00024 Score=70.30 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=28.3
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.++|+.|+..++.++-.++.++.|||||...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV 177 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH
Confidence 3799999999999999999999999999863
No 164
>KOG1803|consensus
Probab=97.81 E-value=6.9e-05 Score=72.13 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=51.6
Q ss_pred CCcHHHHHHHhhHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRD-VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d-~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...+-|..|+....+.++ .++++|+|||||.....-+.+.+..+ -++|+..||++-.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------------------k~VLVcaPSn~AVdNi 245 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-------------------KRVLVCAPSNVAVDNI 245 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-------------------CeEEEEcCchHHHHHH
Confidence 455789999999888854 68999999999998665555544433 3799999999999999
Q ss_pred HHHHH
Q psy12758 162 YDEAK 166 (308)
Q Consensus 162 ~~~~~ 166 (308)
.+++.
T Consensus 246 verl~ 250 (649)
T KOG1803|consen 246 VERLT 250 (649)
T ss_pred HHHhc
Confidence 99754
No 165
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.80 E-value=0.00017 Score=72.10 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=53.0
Q ss_pred CCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
.+++.|..|+..++.. ..+++.+|+|||||....- ++..+...+ .++++.+||+.-++++
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~-ii~~~~~~g------------------~~VLv~a~sn~Avd~l 217 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE-LIRQLVKRG------------------LRVLVTAPSNIAVDNL 217 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH-HHHHHHHcC------------------CCEEEEcCcHHHHHHH
Confidence 4589999999998876 6788999999999976543 344443332 3799999999999999
Q ss_pred HHHHHHH
Q psy12758 162 YDEAKKF 168 (308)
Q Consensus 162 ~~~~~~~ 168 (308)
.+.+.+.
T Consensus 218 ~e~l~~~ 224 (637)
T TIGR00376 218 LERLALC 224 (637)
T ss_pred HHHHHhC
Confidence 9998764
No 166
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.74 E-value=0.00045 Score=70.10 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+ ...++-|++|+..+..++-+++.++.|||||...
T Consensus 320 ~~-~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l 355 (720)
T TIGR01448 320 LR-KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT 355 (720)
T ss_pred cC-CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH
Confidence 44 4689999999999999899999999999999753
No 167
>KOG0384|consensus
Probab=97.71 E-value=0.00013 Score=75.16 Aligned_cols=155 Identities=19% Similarity=0.317 Sum_probs=97.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh----cCCCEEEEccCCCchhH---HhHHHHHHHHHhcCCCC
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII----SGRDVMACAQTGSGKTA---AFLVPILNQMYERGPLP 130 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTl---a~llpil~~l~~~~~~~ 130 (308)
|..+.|..|...+..+.. .+.+.+|.+.+.-++ .+.++|+.-..|-|||. +||-.+++...-.+
T Consensus 351 ~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g--- 421 (1373)
T KOG0384|consen 351 PQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG--- 421 (1373)
T ss_pred ccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC---
Confidence 445678777766655544 567888988876544 67899999999999985 45554444331111
Q ss_pred CCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhc
Q psy12758 131 TPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYR 210 (308)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~ 210 (308)
| -||++|.--+. ++.+.+...
T Consensus 422 ------------------------------------------------------p-flvvvplst~~----~W~~ef~~w 442 (1373)
T KOG0384|consen 422 ------------------------------------------------------P-FLVVVPLSTIT----AWEREFETW 442 (1373)
T ss_pred ------------------------------------------------------C-eEEEeehhhhH----HHHHHHHHH
Confidence 2 35666644332 333333333
Q ss_pred CCCceEEEecCCchhHhHHhh----cC-----CCeEEEECcHHHHHHHHcCCcCCCC--CceEEechhhhcccCCCHHHH
Q psy12758 211 SQLRPCVVYGGSNVGDQMRDL----DR-----GCHLLVATPGRLVDMLERGKIGLAN--CRFLVLDEADRMLDMGFEPQI 279 (308)
Q Consensus 211 ~~~~~~~~~gg~~~~~~~~~l----~~-----~~~IlV~TP~~L~~~l~~~~~~l~~--~~~lViDEad~ll~~~f~~~l 279 (308)
..+++.+.+|.....+.++.. .. ..+++++|.+.++.- .-.|++ -.+++|||||+|-+. ...+
T Consensus 443 ~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 443 TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCch--HHHH
Confidence 478888888888777666654 12 479999999766432 111333 368999999999754 2333
Q ss_pred HHHHHhc
Q psy12758 280 RCIVQEN 286 (308)
Q Consensus 280 ~~i~~~l 286 (308)
...+..+
T Consensus 517 ~~~l~~f 523 (1373)
T KOG0384|consen 517 YESLNQF 523 (1373)
T ss_pred HHHHHHh
Confidence 3334444
No 168
>KOG0389|consensus
Probab=97.66 E-value=0.00022 Score=70.50 Aligned_cols=153 Identities=16% Similarity=0.241 Sum_probs=93.2
Q ss_pred CcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 84 PTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 84 pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
.-++|.-.+.-+. .+-+.|+.-..|=|||.-. +..+..|...+.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~------------------------------- 447 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN------------------------------- 447 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC-------------------------------
Confidence 4467766665433 3446799999999999643 444444444332
Q ss_pred HHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCC
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGC 235 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~ 235 (308)
. .--|||||+--|-+ ..+++.++| ..+++...||.......++.. ..+.
T Consensus 448 -----------------------~-gpHLVVvPsSTleN-WlrEf~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~y 500 (941)
T KOG0389|consen 448 -----------------------P-GPHLVVVPSSTLEN-WLREFAKWC--PSLKVEPYYGSQDERRELRERIKKNKDDY 500 (941)
T ss_pred -----------------------C-CCcEEEecchhHHH-HHHHHHHhC--CceEEEeccCcHHHHHHHHHHHhccCCCc
Confidence 1 12477888766543 344455554 347788888888666665544 2368
Q ss_pred eEEEECcHHHHHHHH-cCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 236 HLLVATPGRLVDMLE-RGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~-~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
||||+|......-=. +..+.-.+++++|+||+|.+-++. .+..+.++.. + ..+.++++.|
T Consensus 501 dVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I-----~-An~RlLLTGT 561 (941)
T KOG0389|consen 501 DVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI-----N-ANFRLLLTGT 561 (941)
T ss_pred cEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc-----c-ccceEEeeCC
Confidence 999999855432111 111223567899999999877664 3455555543 2 3456677777
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.0002 Score=72.10 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=94.7
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|..+|.-.--.+.. .-++.+.||-|||++..+|+.-..+..
T Consensus 80 ~~~dVQliG~i~lh~--g~iaEM~TGEGKTL~atlp~ylnaL~g------------------------------------ 121 (822)
T COG0653 80 RHFDVQLLGGIVLHL--GDIAEMRTGEGKTLVATLPAYLNALAG------------------------------------ 121 (822)
T ss_pred ChhhHHHhhhhhhcC--CceeeeecCCchHHHHHHHHHHHhcCC------------------------------------
Confidence 455666655444444 448899999999999999987655443
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
..+.+++...-|+..-..++..+....++.+.+...+.....+.... .|||..+|-
T Consensus 122 ----------------------kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~Tn 177 (822)
T COG0653 122 ----------------------KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTN 177 (822)
T ss_pred ----------------------CCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccc
Confidence 23677888888999999999999999999999988888665554443 589999999
Q ss_pred HHH-HHHHHcCC------cCCCCCceEEechhhhcc
Q psy12758 243 GRL-VDMLERGK------IGLANCRFLVLDEADRML 271 (308)
Q Consensus 243 ~~L-~~~l~~~~------~~l~~~~~lViDEad~ll 271 (308)
..| .+++..+. .....+.+-|+||+|.++
T Consensus 178 nElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 178 NELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred cccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 887 44554321 124568899999999876
No 170
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.61 E-value=0.0007 Score=58.58 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=49.2
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhc---CCCEEEEccCCCchhHHhHHHHHHHHHhcC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIIS---GRDVMACAQTGSGKTAAFLVPILNQMYERG 127 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~---g~d~lv~a~TGsGKTla~llpil~~l~~~~ 127 (308)
+|+-...|.+++-.+.. ++ ..++.|.+....+.+ |+|.+.+.-.|.|||-+ ++|++..++.++
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg 69 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG 69 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC
Confidence 57777788888866643 32 568999998888775 58999999999999986 688888777654
No 171
>KOG4439|consensus
Probab=97.59 E-value=0.00016 Score=70.58 Aligned_cols=141 Identities=23% Similarity=0.261 Sum_probs=84.8
Q ss_pred CCcHHHHHHHhhHhc-----CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 83 KPTPVQKYAIPVIIS-----GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~-----g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
..-|+|..++..+.- +..-|+...-|-|||+..+-.++..=......
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~---------------------------- 376 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAR---------------------------- 376 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhh----------------------------
Confidence 345888888866552 24668888899999998766665432221100
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
+ ...... ..+|||||- .|.-|.+.++.+......++++.+||.....-..+.| ...||
T Consensus 377 ---------~----------~~~~~a-~~TLII~Pa-Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDv 434 (901)
T KOG4439|consen 377 ---------E----------KKGESA-SKTLIICPA-SLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKEL-RKYDV 434 (901)
T ss_pred ---------c----------cccccc-CCeEEeCcH-HHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHH-hhcce
Confidence 0 000001 137888884 5667777777777777778888888766422222333 35899
Q ss_pred EEECcHHHHH----HHHcCC--cCCCCC--ceEEechhhhcccC
Q psy12758 238 LVATPGRLVD----MLERGK--IGLANC--RFLVLDEADRMLDM 273 (308)
Q Consensus 238 lV~TP~~L~~----~l~~~~--~~l~~~--~~lViDEad~ll~~ 273 (308)
+|+|+.-+.. -+..+. -.+-++ ..+|+||||.+-+.
T Consensus 435 ViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 435 VITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred EEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 9999854433 111111 112233 45899999988764
No 172
>KOG1802|consensus
Probab=97.58 E-value=0.00023 Score=69.22 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc
Q psy12758 75 NIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPT 154 (308)
Q Consensus 75 ~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt 154 (308)
.+...++.+...-|..|+.+++...=.++++|+|||||..-.--+++...... -.+|+..|+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~------------------~~VLvcApS 463 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA------------------GPVLVCAPS 463 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcC------------------CceEEEccc
Confidence 34445777888999999999999999999999999999876554444443322 268999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy12758 155 RELATQIYDEAKKFA 169 (308)
Q Consensus 155 ~~l~~q~~~~~~~~~ 169 (308)
+-..+|+.+.+.+.+
T Consensus 464 NiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 464 NIAVDQLAEKIHKTG 478 (935)
T ss_pred chhHHHHHHHHHhcC
Confidence 999999999888764
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.56 E-value=0.00029 Score=50.39 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHhhHhcCCC-EEEEccCCCchhHHhHHHHHHHH
Q psy12758 91 AIPVIISGRD-VMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 91 ~ip~i~~g~d-~lv~a~TGsGKTla~llpil~~l 123 (308)
++...+++.. +++.++.|||||...+--+...+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3443333444 55699999999976555444444
No 174
>KOG1131|consensus
Probab=97.55 E-value=0.0009 Score=63.60 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCCCcHHHHHHHh----hHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 81 YDKPTPVQKYAIP----VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 81 ~~~pt~iQ~~~ip----~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
|..-.|-|-+=+- .+-.+.+.++.+|+|+|||.+.|-.++......+. .-.+.++-+.|-.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~---------------~~~KliYCSRTvp 78 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD---------------EHRKLIYCSRTVP 78 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc---------------ccceEEEecCcch
Confidence 4455566654443 33456789999999999999988777766555431 1245566667777
Q ss_pred HHHHHHHHHHHHH
Q psy12758 157 LATQIYDEAKKFA 169 (308)
Q Consensus 157 l~~q~~~~~~~~~ 169 (308)
-.+....+++++.
T Consensus 79 EieK~l~El~~l~ 91 (755)
T KOG1131|consen 79 EIEKALEELKRLM 91 (755)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 175
>KOG0392|consensus
Probab=97.53 E-value=0.0012 Score=68.35 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=98.3
Q ss_pred CcHHHHHHHhh--HhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 84 PTPVQKYAIPV--IISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 84 pt~iQ~~~ip~--i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
.+.+|++.+.- ++.. -+-|+|--.|=|||+--+.-+....++.....
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~----------------------------- 1026 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSES----------------------------- 1026 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccc-----------------------------
Confidence 35678777644 3332 37799999999999987666655555442100
Q ss_pred HHHHHHHHHHhhhcCCccccccccccc-cccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPL-GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~-~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
.+.. +. .||+|| ..|+.....++.+++.. +++...+|+...+...+.--+.++|+
T Consensus 1027 --------------------~e~~-~~PSLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~ii 1082 (1549)
T KOG0392|consen 1027 --------------------SEFN-RLPSLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANII 1082 (1549)
T ss_pred --------------------hhhc-cCCeEEECC-chhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceE
Confidence 0001 22 678888 45777888888888766 56666777777776666666778999
Q ss_pred EECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 239 VATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
|+.++-+..-+.. +.-.+..|.|+||-|-|-+. ...+...+..+. .++ .+++|.|
T Consensus 1083 VtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~----a~h-RLILSGT 1137 (1549)
T KOG0392|consen 1083 VTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR----ANH-RLILSGT 1137 (1549)
T ss_pred EeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh----hcc-eEEeeCC
Confidence 9999776421110 00123468999999987654 233444444442 233 4455877
No 176
>KOG1002|consensus
Probab=97.45 E-value=0.00071 Score=63.89 Aligned_cols=128 Identities=22% Similarity=0.304 Sum_probs=84.3
Q ss_pred CCcHHHHHHHhhHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 83 KPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-----~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
..-|+|.+.+--+... ..-|+.-..|.|||.-.+..++...
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---------------------------------- 229 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV---------------------------------- 229 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----------------------------------
Confidence 4457888877544432 3457788999999987655444311
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
.+...||++|+.+| .|..+++.++.. ..+++...+|.... ...+.+. +.|+
T Consensus 230 -------------------------~ra~tLVvaP~VAl-mQW~nEI~~~T~-gslkv~~YhG~~R~-~nikel~-~YDv 280 (791)
T KOG1002|consen 230 -------------------------DRAPTLVVAPTVAL-MQWKNEIERHTS-GSLKVYIYHGAKRD-KNIKELM-NYDV 280 (791)
T ss_pred -------------------------ccCCeeEEccHHHH-HHHHHHHHHhcc-CceEEEEEeccccc-CCHHHhh-cCcE
Confidence 01348999999986 577888888876 44666666665433 3333433 5899
Q ss_pred EEECcHHHHHHHHcCCcC-------------CCCCc--eEEechhhhcccC
Q psy12758 238 LVATPGRLVDMLERGKIG-------------LANCR--FLVLDEADRMLDM 273 (308)
Q Consensus 238 lV~TP~~L~~~l~~~~~~-------------l~~~~--~lViDEad~ll~~ 273 (308)
+.+|..-+.+..++.... |.+++ -+|+||||.+-+.
T Consensus 281 VLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 281 VLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred EEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 999999887776542211 33333 4899999988764
No 177
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.43 E-value=0.0008 Score=69.97 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCcHHHHHHHhhHhcCCC-EEEEccCCCchhHH
Q psy12758 83 KPTPVQKYAIPVIISGRD-VMACAQTGSGKTAA 114 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d-~lv~a~TGsGKTla 114 (308)
..++-|.+++..++.+++ +++.+..|||||..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 689999999999998765 68999999999985
No 178
>KOG1000|consensus
Probab=97.42 E-value=0.0023 Score=60.59 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhhHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccc
Q psy12758 68 MTEIITNNIALARYDKPTPVQKYAIPVII-SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFP 146 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~-~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (308)
+++.|.++| -|.|.+.+...+ .|.-+++.-..|-|||+-++.-+ ..+...+
T Consensus 191 ~d~kLvs~L--------lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA--~yyraEw------------------ 242 (689)
T KOG1000|consen 191 MDPKLVSRL--------LPFQREGVIFALERGGRILLADEMGLGKTIQALAIA--RYYRAEW------------------ 242 (689)
T ss_pred cCHHHHHhh--------CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH--HHHhhcC------------------
Confidence 345555554 589999887766 56788999999999998765432 2222221
Q ss_pred cccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhH
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGD 226 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 226 (308)
-.||+||.- +-....+.+.++.... ..+.++.++.+...
T Consensus 243 ---------------------------------------plliVcPAs-vrftWa~al~r~lps~-~pi~vv~~~~D~~~ 281 (689)
T KOG1000|consen 243 ---------------------------------------PLLIVCPAS-VRFTWAKALNRFLPSI-HPIFVVDKSSDPLP 281 (689)
T ss_pred ---------------------------------------cEEEEecHH-HhHHHHHHHHHhcccc-cceEEEecccCCcc
Confidence 145666643 2233444454444222 22445555544321
Q ss_pred hHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 227 QMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 227 ~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
. +-....|.|...+.+..+-.- +.-...+++|+||.|.+-+.. ....+.++.-+ ..-..+|++|.|-
T Consensus 282 ~---~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dll----k~akhvILLSGTP 348 (689)
T KOG1000|consen 282 D---VCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLL----KVAKHVILLSGTP 348 (689)
T ss_pred c---cccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHH----HHhhheEEecCCc
Confidence 1 112246888888766543221 112346789999999776543 33355554443 2234688889884
No 179
>PRK06526 transposase; Provisional
Probab=97.37 E-value=0.00045 Score=61.28 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.5
Q ss_pred HhcCCCEEEEccCCCchhHHhHH
Q psy12758 95 IISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ll 117 (308)
+..++++++.+|+|+|||.....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 34678999999999999976543
No 180
>KOG0391|consensus
Probab=97.37 E-value=0.001 Score=68.44 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=92.5
Q ss_pred CcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 84 PTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 84 pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
.+.+|...+.-+. .+-|-|+.-..|-|||.--+--+.+..++.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegn------------------------------- 664 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGN------------------------------- 664 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccC-------------------------------
Confidence 3567777665433 33478999999999998754433333333321
Q ss_pred HHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh---cCCCe
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL---DRGCH 236 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~~~~ 236 (308)
..--||++||--+.+ ..-+++++| .++++...||........+.- .+..|
T Consensus 665 ------------------------WGPHLIVVpTsviLn-WEMElKRwc--PglKILTYyGs~kErkeKRqgW~kPnaFH 717 (1958)
T KOG0391|consen 665 ------------------------WGPHLIVVPTSVILN-WEMELKRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFH 717 (1958)
T ss_pred ------------------------CCCceEEeechhhhh-hhHHHhhhC--CcceEeeecCCHHHHHHHhhcccCCCeeE
Confidence 011367778766544 455677776 456777788776544333322 23568
Q ss_pred EEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 237 LLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
|.|+.+..+..-+. .+.-++.+||||||||++-++. ....+.+++.. ..|.++++.|
T Consensus 718 VCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn------sqrRLLLtgT 774 (1958)
T KOG0391|consen 718 VCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN------SQRRLLLTGT 774 (1958)
T ss_pred EeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh-HHHHHHHhccc------hhheeeecCC
Confidence 99999865543322 2333567899999999997652 34466676642 3456666665
No 181
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.36 E-value=0.0026 Score=64.97 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.1
Q ss_pred CCcHHHHHHHhhHhcC-CCEEEEccCCCchhHH
Q psy12758 83 KPTPVQKYAIPVIISG-RDVMACAQTGSGKTAA 114 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla 114 (308)
..++-|..|+..++.+ +-+++.++.|||||..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl 384 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM 384 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH
Confidence 5789999999998875 6679999999999975
No 182
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.36 E-value=0.00049 Score=54.02 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=13.6
Q ss_pred cCCCEEEEccCCCchhHHhHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ll 117 (308)
+++-+++.|++|+|||...-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 356789999999999986543
No 183
>KOG0331|consensus
Probab=97.34 E-value=0.0012 Score=63.56 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=47.2
Q ss_pred ccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhc----CCCeEEEECcHHHHHHHHcCCcCCCCCce
Q psy12758 186 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLD----RGCHLLVATPGRLVDMLERGKIGLANCRF 261 (308)
Q Consensus 186 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~~l~~~~~~l~~~~~ 261 (308)
++||.|-|+.-|.++...++.. ++.+.+++|+.+..+....|+ ..+.|||||- +..+.+++.++++
T Consensus 343 KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~dV~l 412 (519)
T KOG0331|consen 343 KVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPDVDL 412 (519)
T ss_pred cEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCccccE
Confidence 4555555555555555554443 367888999998877766553 3589999995 4556678888888
Q ss_pred EE
Q psy12758 262 LV 263 (308)
Q Consensus 262 lV 263 (308)
+|
T Consensus 413 VI 414 (519)
T KOG0331|consen 413 VI 414 (519)
T ss_pred EE
Confidence 87
No 184
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.33 E-value=0.00063 Score=61.55 Aligned_cols=71 Identities=27% Similarity=0.266 Sum_probs=53.7
Q ss_pred CcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHH
Q psy12758 84 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYD 163 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~ 163 (308)
+|+-|.+++.. ...+++|.|..|||||.+.+-=++..+...+ ....++++++.|+..+..+.+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---------------~~~~~Il~lTft~~aa~e~~~ 63 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---------------VPPERILVLTFTNAAAQEMRE 63 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---------------STGGGEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---------------CChHHheecccCHHHHHHHHH
Confidence 36789999988 6779999999999999987666666554432 233579999999999999999
Q ss_pred HHHHHHhh
Q psy12758 164 EAKKFAYR 171 (308)
Q Consensus 164 ~~~~~~~~ 171 (308)
++.+....
T Consensus 64 ri~~~l~~ 71 (315)
T PF00580_consen 64 RIRELLEE 71 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHhcCc
Confidence 98886443
No 185
>PRK06893 DNA replication initiation factor; Validated
Probab=97.30 E-value=0.00071 Score=59.08 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 256 LANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+.+.++|||||+|.+... .+...+..+++.+. ..+.+++++|++.+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~---~~~~~illits~~~ 135 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK---EQGKTLLLISADCS 135 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 356789999999988633 34445566666542 22456777888764
No 186
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.29 E-value=0.00063 Score=63.65 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=26.5
Q ss_pred CcHHHHHHHhhH------hcCCCEEEEccCCCchhHHh
Q psy12758 84 PTPVQKYAIPVI------ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 84 pt~iQ~~~ip~i------~~g~d~lv~a~TGsGKTla~ 115 (308)
.++=|+.++..+ ..+..+++.++-|||||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH
Confidence 456788888887 67889999999999999743
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.22 E-value=0.0049 Score=48.41 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHH
Q psy12758 98 GRDVMACAQTGSGKTAA 114 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla 114 (308)
++.+++.+++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0045 Score=58.15 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=31.1
Q ss_pred CcHHHHHHHHcCCcCCCCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 241 TPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 241 TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
++..+...+.+ +.+.++++||++.++.... ....+..++.... +...-++++|||.-
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~---~~~e~~LVlsat~~ 298 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG---RDAEFHLAVSSTTK 298 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC---CCCeEEEEEcCCCC
Confidence 34444444433 3567889999998775321 1223344444331 22245788898864
No 189
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.18 E-value=0.0031 Score=54.55 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCCCCccCCC--CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 58 PLPPQFDDIQ--MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 58 ~~~~~f~~l~--l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
+.+.+|+++- -....++.|.+.- . ...++.+++.+++|+|||....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~-----------~--~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLA-----------A--GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHH-----------h--cCCCCeEEEECCCCCCHHHHHH
Confidence 3345677763 3444555554321 0 1235789999999999997543
No 190
>PRK08727 hypothetical protein; Validated
Probab=97.15 E-value=0.0022 Score=56.17 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=13.9
Q ss_pred CCEEEEccCCCchhHH
Q psy12758 99 RDVMACAQTGSGKTAA 114 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla 114 (308)
..+++.+++|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4599999999999964
No 191
>PRK05642 DNA replication initiation factor; Validated
Probab=97.13 E-value=0.0014 Score=57.38 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 256 LANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+.++++||||++|.+... .+...+-.+++.+. ..++++++ +++.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~g~~ili-ts~~ 139 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR---DSGRRLLL-AASK 139 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH---hcCCEEEE-eCCC
Confidence 345678999999977543 34556777776652 23455544 5554
No 192
>KOG4150|consensus
Probab=97.07 E-value=0.0011 Score=63.77 Aligned_cols=180 Identities=6% Similarity=-0.120 Sum_probs=115.4
Q ss_pred HHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 76 IALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
+..+.-+.-..+|.+++..+.+|+++++...|.+||.++|.+.....+...+. ...++..||.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------------s~~~~~~~~~ 341 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------------TNSLLPSEMV 341 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------------cceecchhHH
Confidence 34455556678999999999999999999999999999999888876655432 2356666777
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCC
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGC 235 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 235 (308)
+++++. .+...+++..-.++- --++-.+.|.+..........+.
T Consensus 342 ~~~~~~---------------------~~~~~V~~~~I~~~K---------------~A~V~~~D~~sE~~~~A~~R~~~ 385 (1034)
T KOG4150|consen 342 EHLRNG---------------------SKGQVVHVEVIKARK---------------SAYVEMSDKLSETTKSALKRIGL 385 (1034)
T ss_pred HHhhcc---------------------CCceEEEEEehhhhh---------------cceeecccCCCchhHHHHHhcCc
Confidence 666541 112233332212211 11333566666666666667789
Q ss_pred eEEEECcHHHHHHHHcCC----cCCCCCceEEechhhhcccCC---CHHHHHHHHHhcCC-CCCCCceEEEEeecCCCCC
Q psy12758 236 HLLVATPGRLVDMLERGK----IGLANCRFLVLDEADRMLDMG---FEPQIRCIVQENGM-PRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~----~~l~~~~~lViDEad~ll~~~---f~~~l~~i~~~l~~-~~~~~~q~i~~SATl~~~v 307 (308)
+++.+.|.......-.+. ..+-...+.+.||+|..+..- -..+|+++...+.. ....+-|++-.|||+-+.+
T Consensus 386 ~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~ 465 (1034)
T KOG4150|consen 386 NTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRT 465 (1034)
T ss_pred ceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHH
Confidence 999999998876442222 223456788999999766541 23445555443311 1234679999999987655
Q ss_pred C
Q psy12758 308 Q 308 (308)
Q Consensus 308 ~ 308 (308)
|
T Consensus 466 ~ 466 (1034)
T KOG4150|consen 466 R 466 (1034)
T ss_pred H
Confidence 3
No 193
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.001 Score=63.54 Aligned_cols=33 Identities=36% Similarity=0.452 Sum_probs=26.4
Q ss_pred CCcHHHHHHHhhHhcC-----CCEEEEccCCCchhHHh
Q psy12758 83 KPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-----~d~lv~a~TGsGKTla~ 115 (308)
.|+.-|-+||..+..| +.-++.+.||||||+..
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~ 49 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM 49 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH
Confidence 6777788888776654 57888999999999864
No 194
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0047 Score=55.20 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=17.1
Q ss_pred hcCCCEEEEccCCCchhHHh
Q psy12758 96 ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~ 115 (308)
..++++++.+|+|+|||...
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred hcCceEEEEecCCCcHHHHH
Confidence 36789999999999999644
No 195
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.03 E-value=0.0055 Score=53.72 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=25.4
Q ss_pred CCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 258 NCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 258 ~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+.++|||||+|.+-.. .+...+..+++.+.. .+..++++ |++.|
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e--~g~~~li~-ts~~~ 141 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILE--SGRTRLLI-TGDRP 141 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH--cCCCeEEE-eCCCC
Confidence 3468999999988543 345556566655421 11235555 55554
No 196
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.0028 Score=58.31 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
.++++++.|+||+|||... ..+...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHH
Confidence 3589999999999999743 33444443
No 197
>KOG0989|consensus
Probab=96.98 E-value=0.0037 Score=56.05 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
|.+|+++--.+.+..+|.. ++-. ..+-+.+..+|+|||||-+.++..-+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~------------a~~~-~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKN------------ALLR-RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred CCcHHhhcchHHHHHHHHH------------HHhh-cCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 6678888777777766642 1111 123578999999999999877665443
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.98 E-value=0.013 Score=53.93 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=38.8
Q ss_pred CCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcC
Q psy12758 79 ARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERG 127 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~ 127 (308)
.|+..-.-.|.-|+..++.- .=+.+.++.|||||+-+|.+.+...+..+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~ 274 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK 274 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh
Confidence 56766667788899888866 34677899999999999999888776653
No 199
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.013 Score=56.66 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=32.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+.+.|.. .+..| +.+++++|.|+|||.+..+-+
T Consensus 9 P~~f~dliGQe~vv~~L~~---------------a~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRN---------------AFTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CCCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 5689998777777776642 12233 468999999999998765543
No 200
>KOG1805|consensus
Probab=96.96 E-value=0.0053 Score=62.41 Aligned_cols=162 Identities=16% Similarity=0.186 Sum_probs=98.1
Q ss_pred CCCCccC---CCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q psy12758 59 LPPQFDD---IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRD-VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPA 134 (308)
Q Consensus 59 ~~~~f~~---l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d-~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~ 134 (308)
.||.|-+ ..+.+.+.+. -+.....-|++|+-.++..+| .+|.+-+|||||..... ++..+...+
T Consensus 646 ~pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~g------- 713 (1100)
T KOG1805|consen 646 KPPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVALG------- 713 (1100)
T ss_pred CCchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHcC-------
Confidence 3566654 4466666653 234667899999999888765 68899999999986543 334444333
Q ss_pred CCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCc
Q psy12758 135 GRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLR 214 (308)
Q Consensus 135 ~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~ 214 (308)
-++|..+.|+.-.+.+.-.++.+....- =+- --..++..+++++.....
T Consensus 714 -----------kkVLLtsyThsAVDNILiKL~~~~i~~l---------------RLG----~~~kih~~v~e~~~~~~~- 762 (1100)
T KOG1805|consen 714 -----------KKVLLTSYTHSAVDNILIKLKGFGIYIL---------------RLG----SEEKIHPDVEEFTLTNET- 762 (1100)
T ss_pred -----------CeEEEEehhhHHHHHHHHHHhccCccee---------------ecC----CccccchHHHHHhccccc-
Confidence 2689999999999998888888742210 000 001233444444321100
Q ss_pred eEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccC
Q psy12758 215 PCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM 273 (308)
Q Consensus 215 ~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~ 273 (308)
........+..-+.+.|+.+|=-.+.+. .+..+.++|.|||||-++...
T Consensus 763 ------s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 763 ------SEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ------chhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCEEEEccccccccc
Confidence 1122334444455677888885333222 233456889999999988753
No 201
>PRK06921 hypothetical protein; Provisional
Probab=96.86 E-value=0.008 Score=53.72 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
.+.++++.+++|+|||... ..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3578999999999999743 34444443
No 202
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.86 E-value=0.0067 Score=48.92 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.4
Q ss_pred EEEEccCCCchhHHhHHH
Q psy12758 101 VMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 101 ~lv~a~TGsGKTla~llp 118 (308)
+++.+++|+|||.....-
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 678999999999865443
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.85 E-value=0.014 Score=61.40 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHhhHhc-CCCEEEEccCCCchhHHh
Q psy12758 67 QMTEIITNNIALARYDKPTPVQKYAIPVIIS-GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 67 ~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~-g~d~lv~a~TGsGKTla~ 115 (308)
++++..+.+....+ ...++-|..++..+.. ++-.++.+..|||||...
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l 414 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM 414 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH
Confidence 45555555544333 3689999999998865 466899999999999754
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.011 Score=55.13 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpi 119 (308)
.|+.+++.+|||+|||....--+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999998754433
No 205
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.82 E-value=0.02 Score=49.63 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=25.6
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
...++|||||+|.+-.. -...+..++.... .....+++++++.+
T Consensus 89 ~~~~~liiDdi~~l~~~-~~~~L~~~~~~~~---~~~~~~vl~~~~~~ 132 (227)
T PRK08903 89 PEAELYAVDDVERLDDA-QQIALFNLFNRVR---AHGQGALLVAGPAA 132 (227)
T ss_pred ccCCEEEEeChhhcCch-HHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 34668999999986432 3344555555431 12233567777654
No 206
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.003 Score=61.12 Aligned_cols=73 Identities=27% Similarity=0.372 Sum_probs=43.3
Q ss_pred CCCeEEEECcHHHHHHHHcCC---cC---CCCCce-EEechhhhcccCC---C--H----HHHHHHHHhcCCCCCCCceE
Q psy12758 233 RGCHLLVATPGRLVDMLERGK---IG---LANCRF-LVLDEADRMLDMG---F--E----PQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 233 ~~~~IlV~TP~~L~~~l~~~~---~~---l~~~~~-lViDEad~ll~~~---f--~----~~l~~i~~~l~~~~~~~~q~ 296 (308)
.+..|..+|...|...+.+.. +. +.+.++ ++-||||++-... - + ...+..+. +.....++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~-la~~~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK-LALEQNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH-HHHhcCCCcee
Confidence 467899999999987765433 32 444554 4669999986431 0 1 11122111 11122345678
Q ss_pred EEEeecCCCC
Q psy12758 297 LMFSATFPKE 306 (308)
Q Consensus 297 i~~SATl~~~ 306 (308)
+.||||.|++
T Consensus 159 lef~at~~k~ 168 (812)
T COG3421 159 LEFSATIPKE 168 (812)
T ss_pred ehhhhcCCcc
Confidence 8899999864
No 207
>PRK04296 thymidine kinase; Provisional
Probab=96.78 E-value=0.01 Score=50.22 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=23.7
Q ss_pred ECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 240 ATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 240 ~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
..+..+...+.. .-.+.++||||||+.+ + .+++..++..+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l-~---~~~v~~l~~~l 102 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFL-D---KEQVVQLAEVL 102 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccC-C---HHHHHHHHHHH
Confidence 444555555544 2356789999999754 2 24455555553
No 208
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.77 E-value=0.003 Score=54.81 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 256 LANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
+...++||||++|.+.+.. ..+.+-.+++.+. ..+.|+|+.|...|.++
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCccc
Confidence 4578899999999886542 3445555555542 34678888887888765
No 209
>PRK12377 putative replication protein; Provisional
Probab=96.77 E-value=0.011 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=18.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
..++++.+++|+|||... ..+...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 368999999999999743 33444443
No 210
>PHA02533 17 large terminase protein; Provisional
Probab=96.75 E-value=0.015 Score=57.12 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=32.7
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
.+.|+|...+..+..++-.++..+=..|||.+....++...+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~ 100 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC 100 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH
Confidence 578899999988766666678888999999987765555444
No 211
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.016 Score=58.36 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++--.+.+++.|.+. +..| +-+|++++.|+|||....+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~a---------------L~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHA---------------LDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHH---------------HhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 56899987788888777542 2233 2468999999999986544
No 212
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.015 Score=59.89 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpil~~ 122 (308)
|.+|+++--.+.+++.|... +.++ +-+|++++.|+|||.+..+-.-..
T Consensus 11 P~~f~eiiGqe~v~~~L~~~---------------i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTA---------------LDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 66899987777777776532 1223 347999999999998876655443
No 213
>PRK04195 replication factor C large subunit; Provisional
Probab=96.66 E-value=0.019 Score=55.77 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhc---CCCEEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIIS---GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~---g~d~lv~a~TGsGKTla~ 115 (308)
.|.+|+++-.++...+.|... +..+.. .+.+++.||+|+|||...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 367899998888887777542 011112 468999999999999754
No 214
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.62 E-value=0.0093 Score=60.32 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
.+++-|.+|+.+. ...++|.|+.|||||.+...=+...+
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li 40 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLI 40 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHH
Confidence 3678899998653 46788999999999998655554444
No 215
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.61 E-value=0.0051 Score=47.99 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHh
Q psy12758 101 VMACAQTGSGKTAAF 115 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ 115 (308)
+++.+|+|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999854
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.60 E-value=0.0046 Score=51.79 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 96 ISGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
..++++++.+++|+|||.... .+...+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~-ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAV-AIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHH-HHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHH-HHHHHhcc
Confidence 357899999999999998643 34444443
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.60 E-value=0.02 Score=50.43 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=25.4
Q ss_pred CCCCceEEechhhhcccCCCHH-HHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEP-QIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~-~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+.++++|||||++......+.. .+..|+..- . .....+++.|
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R-y--~~~~~tiitS 202 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRR-S--SSKRPTGMLT 202 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHH-H--hCCCCEEEeC
Confidence 4577899999999876544544 345565541 1 2235566655
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.59 E-value=0.0087 Score=56.99 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.0
Q ss_pred CcHHHHHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 84 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
|-......+..+..++++++.+++|+|||...-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666777789999999999999997653
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.58 E-value=0.0035 Score=48.72 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
++.+++.+|+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 5678999999999998653
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.016 Score=55.76 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=29.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+...|... +.++ +-+++++|.|+|||.++.+-
T Consensus 14 P~~f~dvVGQe~iv~~L~~~---------------i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNA---------------LKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred CCCHHHHhChHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 56788876666666554321 2223 34799999999999876544
No 221
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.57 E-value=0.014 Score=53.20 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEE-EccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMA-CAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv-~a~TGsGKTla~ 115 (308)
.|.+|+++-.++.+.+.|... +..| .++++ .||+|+|||...
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHHH
Confidence 367999999999888777532 1123 24454 899999999753
No 222
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.047 Score=54.65 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCC--C-EEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGR--D-VMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~--d-~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+++.|.. .+..|+ + +++.++.|+|||....+-+
T Consensus 12 P~~f~divGQe~vv~~L~~---------------~l~~~rl~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALAN---------------ALDLGRLHHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred CCCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5678888667777766641 223342 2 6899999999998765543
No 223
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.02 Score=56.97 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=33.6
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpi 119 (308)
.|.+|+++--.+.+.+.|... +..| +.+++++|.|+|||....+-+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~---------------~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNA---------------FETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHH---------------HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 367899997788887777531 2233 468999999999998765544
No 224
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.04 Score=54.84 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhc---CCCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIIS---GRDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~---g~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+.+.|... +.+ ++.+|+++|.|+|||....+-
T Consensus 12 P~~~~eiiGq~~~~~~L~~~---------------i~~~~i~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNA---------------IAEGRVAHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHH---------------HHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 67888887677776665321 112 245699999999999876544
No 225
>PLN03025 replication factor C subunit; Provisional
Probab=96.46 E-value=0.015 Score=53.34 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=30.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ll 117 (308)
.|.+|+++--++.+++.|... ++. -...++++.||+|+|||.....
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~-------~~~------~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVI-------ARD------GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHH-------Hhc------CCCceEEEECCCCCCHHHHHHH
Confidence 367888887777777766542 000 0124699999999999976543
No 226
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.045 Score=51.84 Aligned_cols=44 Identities=34% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--++.+.+.|.. .+.+| +.+++++|.|+|||.++.+-
T Consensus 12 P~~~~eiiGq~~~~~~L~~---------------~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 12 PKKFADITAQEHITRTIQN---------------SLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred CCcHhhccChHHHHHHHHH---------------HHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 5678887667766665532 22234 34889999999999876554
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.43 E-value=0.014 Score=59.47 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
..+++-|.+++.+. ...++|.|..|||||.+...=+...
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~L 41 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWL 41 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHH
Confidence 35789999998653 4689999999999998854444433
No 228
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.42 E-value=0.026 Score=51.85 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=30.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCC--CEEEEccCCCchhHHhHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGR--DVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~--d~lv~a~TGsGKTla~ll 117 (308)
.|.+|+++--.+.+.+.|... +..++ .+++.+|+|+|||.....
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~---------------~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRA---------------VDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHH---------------HhCCCCceEEEECCCCCCHHHHHHH
Confidence 366788876666666665431 22343 799999999999986533
No 229
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.03 Score=54.66 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=30.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++-=.+.+++.|... +..+ +-+++++|.|+|||.++.+-
T Consensus 12 P~~f~divGq~~v~~~L~~~---------------~~~~~l~ha~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNA---------------LDQQYLHHAYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHH---------------HHhCCCCeeEEEECCCCCCHHHHHHHH
Confidence 56888887677777766421 1222 24699999999999876553
No 230
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.043 Score=53.53 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=29.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++-=.+.+.+.|... +...-+ ++-+++.+|.|+|||.+...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~-------i~~~~l-----~ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAA-------LRQGRL-----GHAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred CCCHHHhcChHHHHHHHHHH-------HHcCCC-----CeEEEEECCCCCCHHHHHHH
Confidence 56788886666666666422 011111 13359999999999987654
No 231
>PRK08116 hypothetical protein; Validated
Probab=96.38 E-value=0.023 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=18.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
..+++.+++|+|||.... .+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 359999999999997543 45555543
No 232
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.04 Score=51.50 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=29.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++--.+.+.+.|.. .+..| +-+++.||.|+|||.....
T Consensus 12 P~~~~~iiGq~~~~~~l~~---------------~~~~~~~~h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISN---------------GLSLGRIHHAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred CCchhhccChHHHHHHHHH---------------HHHcCCCCeEEEEecCCCCCHHHHHHH
Confidence 5688888767777666532 12222 2368999999999986544
No 233
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.068 Score=49.27 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=27.0
Q ss_pred CcHHHHHHHhhHhcC----CCEEEEccCCCchhHHhHH
Q psy12758 84 PTPVQKYAIPVIISG----RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g----~d~lv~a~TGsGKTla~ll 117 (308)
.+|||...|..+... +-+++++|.|+|||..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 468999999887754 3588999999999976544
No 234
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.032 Score=54.74 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+.+.|... +..+ +-+++.+|.|+|||....+-
T Consensus 12 P~~f~divGq~~v~~~L~~~---------------i~~~~~~ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNA---------------LEQQRLHHAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHH---------------HHcCCCCEEEEEECCCCCCHHHHHHHH
Confidence 56788887677766665432 1222 34689999999999876553
No 235
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.021 Score=56.79 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+.+.|... +.+| +-+|++++.|+|||....+-
T Consensus 12 PqtFddVIGQe~vv~~L~~a---------------l~~gRLpHA~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHA---------------LEQQRLHHAYLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHH---------------HHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 56788887777776665431 1222 34699999999999876553
No 236
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.04 Score=54.51 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+.+.|... +. .-.-++-++++||.|+|||.+.-+-.
T Consensus 12 P~~f~~viGq~~v~~~L~~~-i~-----------~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNA-IK-----------QGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CCcHHhccCcHHHHHHHHHH-HH-----------cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56899987788777776532 10 00012457889999999998765543
No 237
>KOG0991|consensus
Probab=96.33 E-value=0.0076 Score=52.16 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=17.3
Q ss_pred CCEEEEccCCCchhHHhHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llp 118 (308)
.++++.+|+|+|||.+.+..
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 58999999999999986554
No 238
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.032 Score=55.56 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+++.|.. .+..+ +-++++++.|+|||....+-
T Consensus 12 P~~f~dviGQe~vv~~L~~---------------~l~~~rl~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTN---------------ALTQQRLHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred CCCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5688887557777776654 12223 23599999999999876553
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.31 E-value=0.073 Score=50.83 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|+.+++.+|||+|||....-
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999976543
No 240
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.054 Score=54.07 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+.+.|.+ .+.+| +.+++++|.|+|||.++.+-+
T Consensus 12 P~~f~eivGQe~i~~~L~~---------------~i~~~ri~ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 12 PSKFADITAQEHITHTIQN---------------SLRMDRVGHGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred CCCHHHhcCcHHHHHHHHH---------------HHHcCCCCeeEEEECCCCCCHHHHHHHHH
Confidence 5678887667777766543 23344 348999999999998765543
No 241
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.27 E-value=0.024 Score=54.99 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=27.4
Q ss_pred HHHHHHHhhHh-----cC----CCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 86 PVQKYAIPVII-----SG----RDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 86 ~iQ~~~ip~i~-----~g----~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
|+|+..+-.++ .| +.+++.-+=|.|||......++..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~ 48 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLF 48 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHh
Confidence 67887777666 22 46888999999999866555554443
No 242
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.26 E-value=0.027 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=17.1
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpi 119 (308)
|+-+.+.+|||+|||.+...-.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4568899999999998764433
No 243
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.26 E-value=0.026 Score=56.84 Aligned_cols=65 Identities=34% Similarity=0.481 Sum_probs=46.5
Q ss_pred CCcHHHHHHHhhHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 83 KPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-----~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
.|+..|..+|..+.++ +..++.+-||||||+...- +++.+ + ...||++|++.+
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~--~-------------------~p~Lvi~~n~~~ 66 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV--N-------------------RPTLVIAHNKTL 66 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh--C-------------------CCEEEEECCHHH
Confidence 6899999999887654 3677999999999986432 22221 1 236777777777
Q ss_pred HHHHHHHHHHHH
Q psy12758 158 ATQIYDEAKKFA 169 (308)
Q Consensus 158 ~~q~~~~~~~~~ 169 (308)
+.|++++++.|.
T Consensus 67 A~ql~~el~~f~ 78 (655)
T TIGR00631 67 AAQLYNEFKEFF 78 (655)
T ss_pred HHHHHHHHHHhC
Confidence 777777777764
No 244
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.23 E-value=0.015 Score=55.75 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=28.4
Q ss_pred CCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 257 ANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
.++++|+|||+|.+.... ..+.+..+++.+. ..+.|+|+.|-+-|.+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~---~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLH---TEGKLIVISSTCAPQD 248 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHH---HCCCcEEEecCCCHHH
Confidence 467899999999876532 3445555555432 2346777655444543
No 245
>KOG0742|consensus
Probab=96.22 E-value=0.0083 Score=55.87 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=30.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhc--CCCEEEEccCCCchhHHh
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIIS--GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~--g~d~lv~a~TGsGKTla~ 115 (308)
.|++.-|++.|-+.+.+.-..+-.. .... -+|++.-+|+|+|||+..
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNT-------K~h~apfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANT-------KKHQAPFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccc-------ccccchhhheeeeCCCCCCchHHH
Confidence 3788888888887776542221110 0011 179999999999999854
No 246
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.22 E-value=0.027 Score=57.00 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=29.5
Q ss_pred CcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 84 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
+++-|.+++.. ...+++|.|..|||||.+.+-=+...+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll 39 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLI 39 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH
Confidence 57889998864 346899999999999997665555554
No 247
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.073 Score=52.95 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+.+.|.+. +.++ +.+|+.+|.|+|||.+..+-+
T Consensus 12 P~sf~dIiGQe~v~~~L~~a---------------i~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRA---------------AQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHH---------------HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 56888886666665555421 1222 468899999999998776543
No 248
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.046 Score=54.87 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+++.|... +..+ +.+|++++.|+|||....+-
T Consensus 12 P~tFddIIGQe~vv~~L~~a---------------i~~~rl~Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNA---------------LDEGRLHHAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 56898887777777766532 1122 46899999999999876553
No 249
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.19 E-value=0.022 Score=54.79 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=28.5
Q ss_pred CCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 256 LANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
+.++++|||||+|.+... ...+.+..+++.+. ..+.|+|+.|-.-|.
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~ 251 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPE 251 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH---HcCCcEEEECCCCHH
Confidence 346778999999977532 23445556666542 234577775554443
No 250
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.15 E-value=0.024 Score=61.20 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=47.6
Q ss_pred CcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHH
Q psy12758 84 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYD 163 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~ 163 (308)
.|+-|.++|. ..|++++|.|..|||||.+..-=++..+.... ...+++++|=|+..+..+.+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----------------~~~~il~~tFt~~aa~e~~~ 63 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV----------------DIDRLLVVTFTNAAAREMKE 63 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----------------CHhhEEEEeccHHHHHHHHH
Confidence 5889999997 46889999999999999987666666654321 11246666666666666666
Q ss_pred HHHHH
Q psy12758 164 EAKKF 168 (308)
Q Consensus 164 ~~~~~ 168 (308)
++++.
T Consensus 64 ri~~~ 68 (1232)
T TIGR02785 64 RIEEA 68 (1232)
T ss_pred HHHHH
Confidence 65553
No 251
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.14 E-value=0.019 Score=55.28 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+.+++.|++|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999753
No 252
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.066 Score=52.18 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=32.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
.|.+|+++--.+.+.+.|.. .+.+| +.+++++|.|+|||.++.+-
T Consensus 16 RP~~f~dliGq~~vv~~L~~---------------ai~~~ri~~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSY---------------TILNDRLAGGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 36789988777777766643 12233 46899999999999876554
No 253
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.055 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=16.6
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpi 119 (308)
+.+++.++||+|||.....-+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 578999999999998654443
No 254
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.06 E-value=0.032 Score=50.34 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcC
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERG 127 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~ 127 (308)
.++++.++||.|||. ++.++....
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~h 85 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLH 85 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHC
Confidence 589999999999998 446665543
No 255
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.05 E-value=0.045 Score=51.52 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.++++.|++|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999864
No 256
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.04 E-value=0.018 Score=51.31 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 71 IITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 71 ~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
++.++|...|..+..+--...+--+..|.-+++.|++|+|||...+--+.+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556666545444333333333345567788999999999997554444433
No 257
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.069 Score=54.96 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CC-EEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RD-VMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d-~lv~a~TGsGKTla~llp 118 (308)
|.+|+++-=.+.+++.|++. +..| .+ +|++||.|+|||....+-
T Consensus 12 P~tFddIIGQe~Iv~~Lkna---------------I~~~rl~HAyLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNA---------------LTQQRLHHAYLFTGTRGVGKTSLARLF 58 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHhCCCCeEEEEECCCCCCHHHHHHHH
Confidence 56788876666666665421 2222 24 589999999999876553
No 258
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.04 E-value=0.021 Score=58.26 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
.+++-|.+++... ...++|.|..|||||.+...=+...+
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li 47 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLM 47 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHH
Confidence 5789999998643 46899999999999987644444333
No 259
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.077 Score=51.35 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=29.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++--.+.+.+.|.. .+.++ +.+++.||+|+|||....+
T Consensus 10 P~~~~divGq~~i~~~L~~---------------~i~~~~l~~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIIN---------------ALKKNSISHAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred CCCHHHccCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 5678887667766555542 12222 3479999999999987654
No 260
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.02 E-value=0.015 Score=57.52 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 256 LANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
+.++++|||||+|.+.... ....+-.+++.+. ..+.|+|+.|-.-|.+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~e 423 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPKQ 423 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChHh
Confidence 3567899999999886543 2344555665542 3356788755544443
No 261
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.02 E-value=0.11 Score=53.46 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
..+.+|||||+|.|... ..+.+..+++..
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~ 896 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWP 896 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHh
Confidence 34568999999999864 345566676653
No 262
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.081 Score=52.59 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=30.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++--.+.+.+.|... +.+| +-+++.+|.|+|||.+..+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNA---------------IDTGRVAHAFLFTGARGVGKTSTARI 57 (576)
T ss_pred CCCHHHccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 56898887777777666431 2223 3468999999999987655
No 263
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.96 E-value=0.029 Score=52.19 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.++++.+|+|+|||...
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999754
No 264
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.96 E-value=0.054 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.7
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 100 DVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
-.++.+..|||||.+..+-++..++..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~ 29 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN 29 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc
Confidence 357899999999999988888877664
No 265
>KOG0388|consensus
Probab=95.94 E-value=0.059 Score=53.49 Aligned_cols=147 Identities=18% Similarity=0.306 Sum_probs=88.6
Q ss_pred HHHHHHHhhH----hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 86 PVQKYAIPVI----ISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 86 ~iQ~~~ip~i----~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
.+|.+.+.-+ -+|=|-|+.-..|-|||.-- +.++.++.+..+-..
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nIwG------------------------------ 618 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNIWG------------------------------ 618 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccCCC------------------------------
Confidence 5566555433 36778899999999999865 556666665542110
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh---------c
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL---------D 232 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---------~ 232 (308)
| -||++|.--|-+ ..+++.+|+ ..++++-..|+.......+.. .
T Consensus 619 -----------------------P-FLVVtpaStL~N-WaqEisrFl--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rn 671 (1185)
T KOG0388|consen 619 -----------------------P-FLVVTPASTLHN-WAQEISRFL--PSFKVLPYWGSPSERKILRKFWNRKNMYRRN 671 (1185)
T ss_pred -----------------------c-eEEeehHHHHhH-HHHHHHHhC--ccceeecCcCChhhhHHHHHhcchhhhhccC
Confidence 1 356666444322 333444443 246777778887766655542 3
Q ss_pred CCCeEEEECcHHHHH---HHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 233 RGCHLLVATPGRLVD---MLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 233 ~~~~IlV~TP~~L~~---~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
.+.||+|++...+.. ++++- +-.|.|+|||..+-.. -....+.++.. ..|-.++++.|
T Consensus 672 a~fhVviTSYQlvVtDeky~qkv-----KWQYMILDEAQAIKSS-sS~RWKtLLsF------~cRNRLLLTGT 732 (1185)
T KOG0388|consen 672 APFHVVITSYQLVVTDEKYLQKV-----KWQYMILDEAQAIKSS-SSSRWKTLLSF------KCRNRLLLTGT 732 (1185)
T ss_pred CCceEEEEeeeeeechHHHHHhh-----hhhheehhHHHHhhhh-hhhHHHHHhhh------hccceeeecCC
Confidence 578999999876532 33322 3368999999987554 23445555553 13445666766
No 266
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.93 E-value=0.069 Score=44.44 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=19.8
Q ss_pred CCCceEEechhhhccc---CCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLD---MGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~---~~f~~~l~~i~~~l 286 (308)
.+.+++||||...+++ ......+..++..+
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 3567899999998887 33344455555554
No 267
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.056 Score=53.92 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+.+.|.. .+.+| +-++++||.|+|||.++.+-
T Consensus 11 PktFddVIGQe~vv~~L~~---------------aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSS---------------ALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred CCCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5678887666666666632 12233 35699999999999876544
No 268
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.93 E-value=0.031 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
..+++.|++|+|||... -.+...+.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~ 161 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEIL 161 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 46899999999999754 33444443
No 269
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.025 Score=50.22 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
++.++++.+++|+|||...
T Consensus 104 ~~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA 122 (254)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 6789999999999999754
No 270
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.90 E-value=0.0055 Score=51.03 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcC--CCCCceEEechhhhcccC
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIG--LANCRFLVLDEADRMLDM 273 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~--l~~~~~lViDEad~ll~~ 273 (308)
+.......+.....+||+|++...|++-..+..+. ..+-.+|||||||.+.+.
T Consensus 106 ~~CPY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 106 GVCPYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp T--HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred CCChhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 34445555666677999999999887754333221 123468999999998764
No 271
>PRK14974 cell division protein FtsY; Provisional
Probab=95.88 E-value=0.089 Score=48.58 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.1
Q ss_pred CEEEEccCCCchhHHhH
Q psy12758 100 DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 100 d~lv~a~TGsGKTla~l 116 (308)
-+++.+++|+|||....
T Consensus 142 vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIA 158 (336)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 47899999999998643
No 272
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.86 E-value=0.03 Score=57.25 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
..+++-|.+++.+. ..+++|.|..|||||.+..-=+...+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li 42 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLI 42 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35789999998653 46899999999999987655555444
No 273
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.85 E-value=0.026 Score=54.15 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 258 NCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+.++|||||+|.+.+.. ....+-.++..+. ..+.|+++.|-.-|
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~---~~~k~iIitsd~~p 238 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREP 238 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH---HcCCeEEEECCCCH
Confidence 56789999999887643 2234444554432 22456666543333
No 274
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.07 Score=48.07 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
++.+++++|||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999997654
No 275
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.81 E-value=0.079 Score=47.09 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
.++++.+|+|||||...-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999998653
No 276
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.1 Score=51.37 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=28.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++-=.+.+++.|.. .+..| +-+++.||.|+|||....+-+
T Consensus 12 P~~f~diiGq~~~v~~L~~---------------~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVH---------------ALETQKVHHAYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred cCcHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5678777555555554432 12222 237899999999998765443
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=95.72 E-value=0.084 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.3
Q ss_pred HhcCCCEEEEccCCCchhHHhH
Q psy12758 95 IISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~l 116 (308)
+..|.++++.+|+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4468899999999999997543
No 278
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.71 E-value=0.0031 Score=52.61 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=38.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEe
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVL 264 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lVi 264 (308)
.+++|.+|+.+-+..+++.+.......+++......+ ............|-.-.|..+... -...++|||
T Consensus 27 ~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliV 96 (177)
T PF05127_consen 27 IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQRIEFVAPDELLAE-------KPQADLLIV 96 (177)
T ss_dssp --EEEE-SS--S-HHHHHCC-----------------------------CCC--B--HHHHCCT-----------SCEEE
T ss_pred ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccceEEEECCHHHHhC-------cCCCCEEEE
Confidence 4578888998888877777665554444332000000 000000112345666666544322 123478999
Q ss_pred chhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 265 DEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 265 DEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
|||=.+- .+.+..++... -.++||.|+
T Consensus 97 DEAAaIp----~p~L~~ll~~~--------~~vv~stTi 123 (177)
T PF05127_consen 97 DEAAAIP----LPLLKQLLRRF--------PRVVFSTTI 123 (177)
T ss_dssp CTGGGS-----HHHHHHHHCCS--------SEEEEEEEB
T ss_pred echhcCC----HHHHHHHHhhC--------CEEEEEeec
Confidence 9998663 46777776542 256777775
No 279
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.69 E-value=0.16 Score=50.36 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--++.+.+.|... +..| +-++++||.|+|||..+..-
T Consensus 12 P~~F~dIIGQe~iv~~L~~a---------------I~~~rl~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNA---------------ILNNKLTHAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 67888887677777766431 1222 45889999999999876544
No 280
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.69 E-value=0.23 Score=52.06 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=67.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.+++|++|+.+-+..+++.++.+. .+.++..++|+.+.....+.+ ....+|||||- .+. ..+++.+++
T Consensus 661 ~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie-~GIDIp~v~ 732 (926)
T TIGR00580 661 GQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE-TGIDIPNAN 732 (926)
T ss_pred CeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cccccccCC
Confidence 578999999999999888888764 357889999998776555433 34689999995 444 457789999
Q ss_pred eEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 261 FLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 261 ~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
++|++.+|++. . .++.++..+.+.
T Consensus 733 ~VIi~~a~~~g---l-s~l~Qr~GRvGR 756 (926)
T TIGR00580 733 TIIIERADKFG---L-AQLYQLRGRVGR 756 (926)
T ss_pred EEEEecCCCCC---H-HHHHHHhcCCCC
Confidence 99999998742 1 244455555543
No 281
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.13 Score=48.16 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=21.2
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
...-++|+||+|.|++..- +.+..|+...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 3445799999999998754 6667776654
No 282
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.67 E-value=0.057 Score=58.95 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=29.4
Q ss_pred CCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHh
Q psy12758 83 KPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~ 115 (308)
..++-|.+|+..++.. +-+++.+..|+|||...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l 869 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF 869 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH
Confidence 6899999999999965 67999999999999864
No 283
>KOG0921|consensus
Probab=95.63 E-value=0.046 Score=55.52 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=84.8
Q ss_pred HHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 89 KYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 89 ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.+.+.++...+-+++.+.||+|||.-+.--+|..+..+.....
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~------------------------------------- 426 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGAS------------------------------------- 426 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccccc-------------------------------------
Confidence 3344555566778999999999999999889988877653110
Q ss_pred HhhhcCCccccccccccccccccCCHHhHHHHHHHH-HHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHH
Q psy12758 169 AYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEA-KKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVD 247 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~-~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ 247 (308)
..+.+--|+|-.+..+.+.+ +.-+...+-.+ |++.......-..---|+.+|-|-++.
T Consensus 427 ----------------~na~v~qprrisaisiaerva~er~e~~g~tv-----gy~vRf~Sa~prpyg~i~fctvgvllr 485 (1282)
T KOG0921|consen 427 ----------------FNAVVSQPRRISAISLAERVANERGEEVGETC-----GYNVRFDSATPRPYGSIMFCTVGVLLR 485 (1282)
T ss_pred ----------------ccceeccccccchHHHHHHHHHhhHHhhcccc-----cccccccccccccccceeeeccchhhh
Confidence 22334445554444433322 11111111111 111111111111112489999999999
Q ss_pred HHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 248 MLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 248 ~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
++.+. +..+.++++||.|.. +.. .+.+..+++-+... ..+-..+++|||+..
T Consensus 486 ~~e~g---lrg~sh~i~deiher-dv~-~dfll~~lr~m~~t-y~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 486 MMENG---LRGISHVIIDEIHER-DVD-TDFVLIVLREMIST-YRDLRVVLMSATIDT 537 (1282)
T ss_pred hhhhc---ccccccccchhhhhh-ccc-hHHHHHHHHhhhcc-chhhhhhhhhcccch
Confidence 98876 456778999999954 331 23344444433211 234566677777654
No 284
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.1 Score=51.81 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=30.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CC-EEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RD-VMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d-~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+.+.|... +.+| .+ +++++|.|+|||.+..+-+
T Consensus 9 P~~f~eivGq~~i~~~L~~~---------------i~~~r~~ha~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSA---------------LDAGRINHAYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56788886677776666432 2233 23 5899999999998876544
No 285
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.57 E-value=0.047 Score=56.58 Aligned_cols=137 Identities=23% Similarity=0.253 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHhhHh-----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 81 YDKPTPVQKYAIPVII-----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~-----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
+..+.++|.+.+.-+. .+.+.++....|-|||+..+.-+.. ++....
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~--------------------------- 387 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK--------------------------- 387 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc---------------------------
Confidence 3456777888775544 2567888899999999876655544 222111
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCch----hHhHHhh
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNV----GDQMRDL 231 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~----~~~~~~l 231 (308)
...+..+|++|+- ++.+..+++.++...... +...+|.... ......+
T Consensus 388 --------------------------~~~~~~liv~p~s-~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 439 (866)
T COG0553 388 --------------------------VYLGPALIVVPAS-LLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDL 439 (866)
T ss_pred --------------------------CCCCCeEEEecHH-HHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHH
Confidence 0014567777754 445566666666544433 4455554431 3333333
Q ss_pred cC-C----CeEEEECcHHHHHHH-HcCCcCCCCCceEEechhhhcccC
Q psy12758 232 DR-G----CHLLVATPGRLVDML-ERGKIGLANCRFLVLDEADRMLDM 273 (308)
Q Consensus 232 ~~-~----~~IlV~TP~~L~~~l-~~~~~~l~~~~~lViDEad~ll~~ 273 (308)
.. + .+++++|.+.|.... ....+.-....++|+||||.+-+.
T Consensus 440 ~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 440 LKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 22 2 799999998887743 112233345678999999997665
No 286
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.49 E-value=0.2 Score=50.64 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=91.6
Q ss_pred HHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q psy12758 74 NNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVL 151 (308)
Q Consensus 74 ~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~ 151 (308)
..|.+...+.+..-|.+.+..++.+ +-+++.|.-|-|||.+.-+.+........
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~------------------------ 260 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG------------------------ 260 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC------------------------
Confidence 4466666666666666677677765 36899999999999998877633221110
Q ss_pred ccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh
Q psy12758 152 APTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL 231 (308)
Q Consensus 152 ~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 231 (308)
.-+++|.+|+.+-+..+...+.+-....|++.......... ....-
T Consensus 261 --------------------------------~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~ 306 (758)
T COG1444 261 --------------------------------SVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVS 306 (758)
T ss_pred --------------------------------CceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeec
Confidence 14588889999888887777766666665543332211100 00000
Q ss_pred cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 232 DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 232 ~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
.....|=.-.|.... ..-++||||||=.+ -.+.++.++... +.++||.|+
T Consensus 307 ~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~~--------~rv~~sTTI 356 (758)
T COG1444 307 GDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRRF--------PRVLFSTTI 356 (758)
T ss_pred CCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhhc--------CceEEEeee
Confidence 122335555663221 11678999999866 356777777653 467778886
No 287
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.35 Score=46.59 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=29.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--++.+++.|... +..| +.+++.||.|+|||.+...-
T Consensus 13 P~~~~diiGq~~~v~~L~~~---------------i~~~~i~ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNA---------------LRFNRAAHAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 67888886677766655321 1122 45789999999999876543
No 288
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.1 Score=49.30 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=25.8
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
.+.+++||||+|+|-.. ....++..+-.| +..-++++.||-+..
T Consensus 116 ~~~kViiIDead~m~~~----aanaLLk~LEep--~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTER----AANALLKAVEEP--PPRTVWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHH----HHHHHHHHhhcC--CCCCeEEEEECChHH
Confidence 56788999999999543 234455544333 233445555554543
No 289
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.44 E-value=0.11 Score=57.29 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHh
Q psy12758 82 DKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~ 115 (308)
...++.|.+|+..++.+ +-+++.+..|+|||...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l 1001 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF 1001 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH
Confidence 36899999999999976 56899999999999763
No 290
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.39 E-value=0.11 Score=58.40 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCcHHHHHHHhhHhcC--CCEEEEccCCCchhHH
Q psy12758 83 KPTPVQKYAIPVIISG--RDVMACAQTGSGKTAA 114 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla 114 (308)
..++-|..++..++.. +=.++.++.|+|||.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~ 462 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI 462 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH
Confidence 5788999999998875 5689999999999975
No 291
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.4 Score=47.54 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+.+.|... +.+| +-+++.+|.|+|||.+..+-
T Consensus 12 P~~f~diiGqe~iv~~L~~~---------------i~~~~i~hayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHS---------------IESNKIANAYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred CCCHHHccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 66888886677666655421 1122 34799999999999876553
No 292
>KOG0741|consensus
Probab=95.37 E-value=0.21 Score=48.35 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCCceEEechhhhcccCC-----CHHH-HHHHHHhcCCCCCCCceEEEEeec
Q psy12758 257 ANCRFLVLDEADRMLDMG-----FEPQ-IRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~-----f~~~-l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
+.+.++|+|+..+++|+. |... ++.++-.++...++++..++|.-|
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecc
Confidence 466789999999999974 6555 455666666766777887777655
No 293
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.086 Score=49.71 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 258 NCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 258 ~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
++++|+||.++.+... ...+.+-.+++.+. ..+.|+++.|-..|.++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~---~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL---ENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH---hcCCEEEEEcCCCchhh
Confidence 7889999999988665 34555666666653 34569999888888765
No 294
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.24 Score=49.54 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=28.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++--++.+.+.|... +..| +-++++||.|+|||.+..+
T Consensus 13 P~~f~~viGq~~~~~~L~~~---------------i~~~~l~hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNA---------------IATNKLAHAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHcCCCCeeEEEECCCCCCHHHHHHH
Confidence 56788876666666655321 2233 3479999999999985444
No 295
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.35 E-value=0.14 Score=44.39 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=26.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC----CCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG----RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g----~d~lv~a~TGsGKTla~ 115 (308)
|.+|+|+-=-+.++..++ -.+.++... .++++.+|+|+|||..+
T Consensus 20 P~~L~efiGQ~~l~~~l~------------i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLK------------ILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -SSCCCS-S-HHHHHHHH------------HHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred CCCHHHccCcHHHHhhhH------------HHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 567888755556665542 223333322 36899999999999744
No 296
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.35 E-value=0.047 Score=50.11 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=32.4
Q ss_pred HHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 74 NNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 74 ~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
..|.+.|+ .++.|.+.+.. +..+++++++++||||||. ++-.++..+
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~ 172 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEM 172 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhh
Confidence 44555665 34667776654 5567899999999999994 555555544
No 297
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.21 Score=50.05 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=32.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpi 119 (308)
.|.+|+++--++.+.+.|... +. .. .-.+.+++.||.|+|||.....-+
T Consensus 11 RP~~f~~liGq~~i~~~L~~~-l~------~~-----rl~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNA-LI------SN-----RIAPAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred CCCcHhhccChHHHHHHHHHH-HH------cC-----CCCceEEEECCCCCChHHHHHHHH
Confidence 467899987777777666432 00 00 012467999999999998765443
No 298
>KOG0953|consensus
Probab=95.33 E-value=0.032 Score=53.80 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=43.9
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEe
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVL 264 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lVi 264 (308)
...++.-|.|-||.++++.+...+ +.|-++.|.......-. .+.++.+-||-++.. + -...++.||
T Consensus 216 ksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s-------v-~~~yeVAVi 281 (700)
T KOG0953|consen 216 KSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS-------V-NTPYEVAVI 281 (700)
T ss_pred ccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--CCcccceEEEEEEee-------c-CCceEEEEe
Confidence 447788888889988888887764 55555555432221111 123445555543221 0 134466788
Q ss_pred chhhhcccCCC
Q psy12758 265 DEADRMLDMGF 275 (308)
Q Consensus 265 DEad~ll~~~f 275 (308)
||+..|-|...
T Consensus 282 DEIQmm~Dp~R 292 (700)
T KOG0953|consen 282 DEIQMMRDPSR 292 (700)
T ss_pred hhHHhhcCccc
Confidence 88887777643
No 299
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.22 Score=48.44 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llpi 119 (308)
|.+|+++--.+.+.+.|... +..+ +-.++.||.|+|||.+..+-+
T Consensus 12 P~~f~diiGq~~i~~~L~~~---------------i~~~~i~hayLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNA---------------VKLQRVSHAYIFAGPRGTGKTTIARILA 59 (486)
T ss_pred CCcHHHccChHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56788876666666555321 1222 235789999999988765543
No 300
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.22 E-value=0.087 Score=53.36 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
..+++-|++|+-.- ..+++|.|..|||||.+..--+...+ .... ....++++++.|+..+..+
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl-~~~~--------------~~~~~IL~ltft~~AA~em 257 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLL-ARGQ--------------AQPEQILLLAFGRQAAEEM 257 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHH-HhCC--------------CCHHHeEEEeccHHHHHHH
Confidence 46899999988532 35789999999999987654443333 3211 1235799999999999999
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHH
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAK 205 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 205 (308)
.+++.+... ...+.+.--..+|.++.+...
T Consensus 258 ~eRL~~~lg--------------~~~v~v~TFHSlal~Il~~~~ 287 (684)
T PRK11054 258 DERIRERLG--------------TEDITARTFHALALHIIQQGS 287 (684)
T ss_pred HHHHHHhcC--------------CCCcEEEeHHHHHHHHHHHhh
Confidence 998877531 012334445678877766654
No 301
>KOG0344|consensus
Probab=95.20 E-value=0.78 Score=44.71 Aligned_cols=102 Identities=18% Similarity=0.292 Sum_probs=70.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
|-++|.+-+.+-|.|++.++. .+-++++..++|+....+.-..+ .....++||| +++.++ ++|.++.
T Consensus 388 PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn 458 (593)
T KOG0344|consen 388 PPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVN 458 (593)
T ss_pred CCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcc
Confidence 778888999999999998887 45578999999997766554433 2357899999 788877 7899999
Q ss_pred eEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 261 FLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 261 ~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
++|-++.-.- -...+.+| .+.+.+-+...-+.+|+
T Consensus 459 ~VInyD~p~s----~~syihrI-GRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 459 LVINYDFPQS----DLSYIHRI-GRTGRAGRSGKAITFYT 493 (593)
T ss_pred eEEecCCCch----hHHHHHHh-hccCCCCCCcceEEEec
Confidence 9998655421 12344555 55444443334444443
No 302
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.20 E-value=0.18 Score=45.78 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=29.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~l 116 (308)
.|.+|+++--.+.+++.|... +..+ ..+++.|++|+|||.+..
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~---------------i~~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSY---------------VKEKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHH---------------HhCCCCCeEEEECCCCCCHHHHHH
Confidence 366888876666666666532 1111 358999999999997653
No 303
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.19 E-value=0.096 Score=49.59 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++-.+...+.+.+. -+.+|.-.+..-+ ...+.+++.+|+|+|||+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 5899987766666666542 2344433333322 24578999999999999854
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.14 E-value=0.061 Score=50.37 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHH
Q psy12758 201 YDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGR 244 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 244 (308)
.++++.++.-.++.+..++........+..+...=.|+|=|-||
T Consensus 249 ~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 249 VEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCC
Confidence 35566666666777777766666666666665555566777654
No 305
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.11 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpi 119 (308)
|+-+.+.+|||+|||.+...-.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3457899999999998754433
No 306
>PF13173 AAA_14: AAA domain
Probab=95.10 E-value=0.24 Score=38.78 Aligned_cols=36 Identities=14% Similarity=0.420 Sum_probs=25.3
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
.-.+++|||+|.+-+ +...++.+...- .+.++++.+
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-----~~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-----PNIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-----cCceEEEEc
Confidence 556899999998854 677788887752 345666643
No 307
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.08 E-value=0.13 Score=51.91 Aligned_cols=65 Identities=35% Similarity=0.484 Sum_probs=47.0
Q ss_pred CCcHHHHHHHhhHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 83 KPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g-----~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
.|++.|..++..+.++ +..++.+.+|||||+.+. .+++.. . ...||++|+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~---~------------------r~vLIVt~~~~~ 69 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL---Q------------------RPTLVLAHNKTL 69 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh---C------------------CCEEEEECCHHH
Confidence 7999999999887644 257799999999998743 222221 1 246778888888
Q ss_pred HHHHHHHHHHHH
Q psy12758 158 ATQIYDEAKKFA 169 (308)
Q Consensus 158 ~~q~~~~~~~~~ 169 (308)
+.|+++.++.+.
T Consensus 70 A~~l~~dL~~~~ 81 (652)
T PRK05298 70 AAQLYSEFKEFF 81 (652)
T ss_pred HHHHHHHHHHhc
Confidence 888888777764
No 308
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.57 Score=43.86 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|-|.+|.++-=++.+.+.|.+ .+.+| +-+++.+|.|+||+.....-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~---------------~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~ 61 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLD---------------AYRSGRLHHAWLIGGPQGIGKATLAYRM 61 (365)
T ss_pred CCCCchhhccChHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 567788888556666666642 22333 35899999999999765443
No 309
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.01 E-value=0.093 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
++++++.|++|+|||.... .+...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999997532 3444443
No 310
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.31 Score=45.03 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred CcHHHHHHHhhHh----cC---CCEEEEccCCCchhHHhHHHH
Q psy12758 84 PTPVQKYAIPVII----SG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 84 pt~iQ~~~ip~i~----~g---~d~lv~a~TGsGKTla~llpi 119 (308)
.+|||...|..+. +| +-.++.+|.|.||+..+..-+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 4578888887665 34 367899999999997665443
No 311
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.99 E-value=0.34 Score=45.24 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=34.5
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
+..++|+|||.| +-|.+-...+.+++..+- ..+.-+|+.|-+-|+++
T Consensus 126 ~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~---~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQ-VTDIADAMILKRLFEALF---KRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeee-ccchhHHHHHHHHHHHHH---HCCCEEEecCCCChHHH
Confidence 456679999999 667766777888888763 34667888888777754
No 312
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.27 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCC-EEEEccCCCchhHHhHHHH
Q psy12758 98 GRD-VMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 98 g~d-~lv~a~TGsGKTla~llpi 119 (308)
..+ +++.+|.|+|||.++....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH
Confidence 456 9999999999998765443
No 313
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.93 E-value=0.14 Score=57.59 Aligned_cols=34 Identities=41% Similarity=0.408 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHh
Q psy12758 82 DKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~ 115 (308)
...++.|..|+..++.+ +-+++.+..|+|||...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l 1053 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML 1053 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH
Confidence 36799999999999876 45788999999999765
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.92 E-value=0.52 Score=43.69 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=26.1
Q ss_pred cHHHHHHHhhHhc--C---CCEEEEccCCCchhHHhHHHH
Q psy12758 85 TPVQKYAIPVIIS--G---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 85 t~iQ~~~ip~i~~--g---~d~lv~a~TGsGKTla~llpi 119 (308)
+|||...|..+.+ + +-+++.+|.|.||+.....-+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5788888877664 3 468899999999998664443
No 315
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.88 E-value=0.99 Score=45.32 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=24.4
Q ss_pred cHHHHHHHhhHh---cCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 85 TPVQKYAIPVII---SGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 85 t~iQ~~~ip~i~---~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
+|.=.+=|..++ ..+-.++.+|=|.|||.+..+.++.
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~ 210 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAA 210 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHH
Confidence 444444444443 4567788999999999876655543
No 316
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.86 E-value=0.28 Score=40.25 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llp 118 (308)
+-+++.++.|+||+.....-
T Consensus 20 ha~L~~G~~g~gk~~~a~~~ 39 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAF 39 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34799999999998765443
No 317
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.83 E-value=0.15 Score=43.41 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHhH
Q psy12758 100 DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 100 d~lv~a~TGsGKTla~l 116 (308)
-+++.+|||+|||.+..
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 36889999999998743
No 318
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.19 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12758 97 SGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~l 116 (308)
.|+.+++.++||+|||....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46788999999999997653
No 319
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.81 E-value=0.09 Score=48.25 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 76 IALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
+.+.|. .++.|...+.. +..+++++++++||||||.. +-.++..+
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i 168 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEI 168 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 445554 35667666655 44568999999999999974 34455544
No 320
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.29 Score=49.62 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~llp 118 (308)
|.+|+++--.+.+.+.|... +..| +-.+++||.|+|||.++.+-
T Consensus 14 P~~f~dIiGQe~~v~~L~~a---------------I~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNI---------------IKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 66788876666666555321 1122 34689999999999876544
No 321
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.41 Score=44.04 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=26.3
Q ss_pred cHHHHHHHhhHhc--C---CCEEEEccCCCchhHHhHHHH
Q psy12758 85 TPVQKYAIPVIIS--G---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 85 t~iQ~~~ip~i~~--g---~d~lv~a~TGsGKTla~llpi 119 (308)
+|||...|..+.. + +-+++.+|.|+|||..+..-+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 5788888877763 3 358899999999998665443
No 322
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.64 E-value=0.29 Score=46.41 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=30.7
Q ss_pred CHHHHHHHHHCCCCC--CcHHH-----HHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 69 TEIITNNIALARYDK--PTPVQ-----KYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 69 ~~~l~~~L~~~~~~~--pt~iQ-----~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
.+++---|...||.. .+.-| ...+|.+..+.|++..+|+|+|||..|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 344444456677752 22211 1223666788999999999999997664
No 323
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.60 E-value=0.39 Score=44.41 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=27.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~l 116 (308)
|.+|+++--.+.+++.|... +.+| +.+++.||.|+|||....
T Consensus 10 p~~~~~iig~~~~~~~l~~~---------------~~~~~~~~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNA---------------IKNGRIAHAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred CCcHhhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHH
Confidence 56788875566666655421 1122 457999999999997553
No 324
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.59 E-value=0.066 Score=48.15 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=35.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcC
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERG 127 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~ 127 (308)
+.++|++|++|+.+.+.+. .. ..=++|.+|||||||.. +..++..+.++.
T Consensus 104 ~i~~~e~LglP~i~~~~~~-~~-----------------~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 104 KIPTLEELGLPPIVRELAE-SP-----------------RGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred cCCCHHHcCCCHHHHHHHh-CC-----------------CceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 4589999999998887332 11 12478999999999875 456677666553
No 325
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.57 E-value=0.59 Score=43.49 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCC---CEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGR---DVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~---d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
|-|..|.++-=+..+...|. ..+.+|+ -+++.++.|+|||..... +...++
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~---------------~a~~~grl~ha~L~~G~~G~GKttlA~~-lA~~Ll 70 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLA---------------QAYREGKLHHALLFEGPEGIGKATLAFH-LANHIL 70 (351)
T ss_pred CCCCchhhccCcHHHHHHHH---------------HHHHcCCCCeeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 55667777755555555443 2333453 589999999999976533 334443
No 326
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.44 Score=46.78 Aligned_cols=43 Identities=26% Similarity=0.456 Sum_probs=30.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ll 117 (308)
|.+|+++--.+.+.+.|... +.+| +-.++.|+.|+|||.+...
T Consensus 10 P~~fdeiiGqe~v~~~L~~~---------------I~~grl~hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLA---------------LDNNRLAHAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred CCCHHHccCcHHHHHHHHHH---------------HHcCCCCeeEEEECCCCCcHHHHHHH
Confidence 66899987777776666432 1222 3358999999999987654
No 327
>KOG0298|consensus
Probab=94.55 E-value=0.14 Score=53.94 Aligned_cols=109 Identities=18% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCcc
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 177 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~ 177 (308)
|++++..-..|.|||.+-+.-.+...-.. +.+.+..+.+-
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~-------------------------------~~~~cS~~~~e--------- 413 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKL-------------------------------CPSCCSELVKE--------- 413 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhccccc-------------------------------chhhhhHHHhc---------
Confidence 57788888999999999877666542111 11112221111
Q ss_pred ccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchh-HhHHhhcCCCeEEEECcHHHHHHH
Q psy12758 178 VVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVG-DQMRDLDRGCHLLVATPGRLVDML 249 (308)
Q Consensus 178 ~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~-~~~~~l~~~~~IlV~TP~~L~~~l 249 (308)
..+......+||++|. .+..|...++...+... ++++...|-.... .+-..+ ..+||+++|...|..=+
T Consensus 414 ~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El 483 (1394)
T KOG0298|consen 414 GENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLLYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNEL 483 (1394)
T ss_pred ccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEEEechhhhcccCchhh-hccCEEEeehHHHHhHh
Confidence 1111122558999995 56678888888877655 5665554422111 111222 35899999998886543
No 328
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.89 Score=41.84 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=25.1
Q ss_pred cHHHHHHHhhHh----cC---CCEEEEccCCCchhHHhHHHH
Q psy12758 85 TPVQKYAIPVII----SG---RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 85 t~iQ~~~ip~i~----~g---~d~lv~a~TGsGKTla~llpi 119 (308)
+|||...|..+. +| +-.++.||.|.||+..+..-+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 577777776655 44 357899999999997654443
No 329
>CHL00181 cbbX CbbX; Provisional
Probab=94.47 E-value=0.31 Score=44.02 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|.++++.+|+|||||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987644
No 330
>KOG0386|consensus
Probab=94.46 E-value=0.07 Score=54.74 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=72.7
Q ss_pred CCcHHHHHHHhhHh---cC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVII---SG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~---~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
+..++|.+.+.-+. ++ -+-|+.-.+|-|||..-+ .++..+++...
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtI-sLitYLmE~K~------------------------------ 442 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTI-SLITYLMEHKQ------------------------------ 442 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHH-HHHHHHHHHcc------------------------------
Confidence 56677777765533 33 477889999999998753 33334444321
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHh---HHhhcCCC
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQ---MRDLDRGC 235 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~ 235 (308)
..+| -+|++|+--|.+-. .++..++ .--....|.|....+. .+......
T Consensus 443 -----------------------~~GP-~LvivPlstL~NW~-~Ef~kWa---PSv~~i~YkGtp~~R~~l~~qir~gKF 494 (1157)
T KOG0386|consen 443 -----------------------MQGP-FLIIVPLSTLVNWS-SEFPKWA---PSVQKIQYKGTPQQRSGLTKQQRHGKF 494 (1157)
T ss_pred -----------------------cCCC-eEEeccccccCCch-hhccccc---cceeeeeeeCCHHHHhhHHHHHhcccc
Confidence 1113 25667766665432 2222222 2223344555443221 12224568
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCC--ceEEechhhhcccC
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANC--RFLVLDEADRMLDM 273 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~--~~lViDEad~ll~~ 273 (308)
+||++|.+.+.. ..-.|+.+ .|+||||.|+|-+.
T Consensus 495 nVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa 530 (1157)
T KOG0386|consen 495 NVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA 530 (1157)
T ss_pred eeeeeeHHHhcC----CHHHHhccCCcceeecccccccch
Confidence 999999976643 22224444 58999999999653
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.43 E-value=0.22 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llp 118 (308)
|.-+++.+++|+|||...+--
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~ 100 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQV 100 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 457899999999999854433
No 332
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.31 E-value=0.082 Score=49.52 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
+++++++|+++.+++.+. ..+..+++++|||||||.. +-.++..+..
T Consensus 129 ~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 129 IPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 457888888887655432 1234689999999999975 3556666543
No 333
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.42 Score=40.39 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=32.6
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
-++|-.+..+.+.+......+. ++++.||||+. ++.....++..+...+
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF-~~~~~v~~l~~lad~l 109 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF-FDEELVYVLNELADRL 109 (201)
T ss_pred ceecCChHHHHHHHHhcccCCC-cCEEEEehhHh-CCHHHHHHHHHHHhhc
Confidence 4667777777777766544333 88999999994 4444455666666654
No 334
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.43 Score=43.77 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=26.0
Q ss_pred CCcHHHHHHHhhHh----cC---CCEEEEccCCCchhHHhHHH
Q psy12758 83 KPTPVQKYAIPVII----SG---RDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~----~g---~d~lv~a~TGsGKTla~llp 118 (308)
.+.|||...+..+. +| +-+++.++.|.||+..+..-
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~ 45 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELF 45 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 35678877776655 34 36899999999999655433
No 335
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.29 E-value=0.42 Score=41.70 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.1
Q ss_pred HhcCCCEEEEccCCCchhHHhHH
Q psy12758 95 IISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ll 117 (308)
+..|.-+++.+++|+|||...+-
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~ 43 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQR 43 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 34577899999999999986433
No 336
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.25 E-value=1.7 Score=36.33 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
...-+++||||+|.|-. +....++..+..
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~ 122 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEE 122 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcC
Confidence 45678999999999854 344556665544
No 337
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.25 E-value=0.11 Score=47.32 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=29.8
Q ss_pred HHHHHCCCCCCcHHHHHHHh-hHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 74 NNIALARYDKPTPVQKYAIP-VIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 74 ~~L~~~~~~~pt~iQ~~~ip-~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
+.|.+.|.- ++-|...+. ++..+++++++++||||||.. +-.++..+
T Consensus 109 ~~l~~~g~~--~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i 156 (299)
T TIGR02782 109 DDYVEAGIM--TAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEI 156 (299)
T ss_pred HHHHhcCCC--CHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 444555543 344545444 455668999999999999974 34455544
No 338
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.24 E-value=0.39 Score=48.16 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ll 117 (308)
.|.+++++-.++..++.|... +....++ ...++=+++.+|+|+|||..+-+
T Consensus 79 rP~~ldel~~~~~ki~~l~~~-------l~~~~~~-~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETW-------LKAQVLE-NAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHH-------HHhcccc-cCCCcEEEEECCCCCCHHHHHHH
Confidence 478999999999887766532 0000000 11234489999999999986543
No 339
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.23 E-value=0.35 Score=46.09 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++++++|+|||...
T Consensus 102 vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC 117 (429)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999998654
No 340
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.21 E-value=0.14 Score=49.86 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCccCCCCCHHHHHHHHHC--CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA--RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~--~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|+++.-.+.+.+.+.+. -+..|..++... ....+.+++.+|+|||||+..
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 5899987766666555432 123333333221 112367999999999999854
No 341
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.17 E-value=0.11 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llp 118 (308)
|+-+.+.++||+|||.....-
T Consensus 191 g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456899999999999876433
No 342
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.14 E-value=0.058 Score=50.29 Aligned_cols=48 Identities=25% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 58 PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 58 ~~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
..+++|+++++++.+.+.+. ..+.-+++++|||||||... -.++..+.
T Consensus 112 ~~~~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 112 AEPPKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred CCCCCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 34678888888765433221 24568999999999999754 44555553
No 343
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.12 E-value=0.51 Score=47.14 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=78.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCc
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRP 176 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~ 176 (308)
..+-.++..|-=.|||.... +++..++..-.
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~------------------------------------------------ 283 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFR------------------------------------------------ 283 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCC------------------------------------------------
Confidence 45677899999999998655 66665553311
Q ss_pred cccccccccccccccCCHHhHHHHHHHHHHhhhcC--CCceEEEecCCchhHhHHhhcCC--CeEEEECcHHHHHHHHcC
Q psy12758 177 CVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS--QLRPCVVYGGSNVGDQMRDLDRG--CHLLVATPGRLVDMLERG 252 (308)
Q Consensus 177 ~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~--~~IlV~TP~~L~~~l~~~ 252 (308)
+.++++.+|.+..+..+++++....+.. +..+..+.| ... .-.+.++ ..|..++- -+.+
T Consensus 284 -------Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa------rntN 346 (738)
T PHA03368 284 -------GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFASS------HNTN 346 (738)
T ss_pred -------CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEecCCCccEEEEEec------cCCC
Confidence 1456777777777777777776655422 111111222 111 0011222 24555431 1122
Q ss_pred CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 253 KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 253 ~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
...=..+++||||||+.+-+ +.+..++-.+. ..+.++|++|.|-+.
T Consensus 347 siRGqtfDLLIVDEAqFIk~----~al~~ilp~l~---~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 347 GIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN---QTNCKIIFVSSTNTG 392 (738)
T ss_pred CccCCcccEEEEechhhCCH----HHHHHHHHHHh---ccCccEEEEecCCCC
Confidence 33345788999999998765 45555554432 337889999988543
No 344
>KOG0338|consensus
Probab=94.12 E-value=0.21 Score=48.00 Aligned_cols=26 Identities=46% Similarity=0.497 Sum_probs=22.2
Q ss_pred cccccccchHHHHHHHHHHHHHHhhh
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYRS 172 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~~ 172 (308)
++||++|||||+.|++...+++....
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 68999999999999999888875433
No 345
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.10 E-value=0.37 Score=47.30 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=39.0
Q ss_pred CCCCCH-HHHHHHHHCCCCCCcH----HHHHHHhhHh--cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 65 DIQMTE-IITNNIALARYDKPTP----VQKYAIPVII--SGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 65 ~l~l~~-~l~~~L~~~~~~~pt~----iQ~~~ip~i~--~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
+.++.+ -|+..|.+..=.++.. ||.+==.+|. .++-+||++..|||||.++|-=+...++.
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~ 253 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYG 253 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhc
Confidence 345544 5666788775555543 4544444444 34678999999999999876555544443
No 346
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.04 E-value=0.02 Score=53.91 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=36.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 100 DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
++++.|+||||||.++++|-+... + -.++|.-|.-|+........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---~------------------~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---P------------------GSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---C------------------CCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999999976421 1 25788888888887776665554
No 347
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.01 E-value=0.59 Score=50.17 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.+++|++++.+-+..+++.+++... +.++.+++|+.+.....+.+ ....+|||||- .+. ..+++.+++
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie-rGIDIP~v~ 881 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE-TGIDIPTAN 881 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh-cccccccCC
Confidence 5689999999998888888887642 46788899998776654443 35689999994 444 457789999
Q ss_pred eEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 261 FLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 261 ~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
++|++.+|++ +. .++.++..+.+.
T Consensus 882 ~VIi~~ad~f---gl-aq~~Qr~GRvGR 905 (1147)
T PRK10689 882 TIIIERADHF---GL-AQLHQLRGRVGR 905 (1147)
T ss_pred EEEEecCCCC---CH-HHHHHHhhccCC
Confidence 9999999864 22 345555555443
No 348
>KOG0733|consensus
Probab=93.95 E-value=0.38 Score=47.39 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=34.8
Q ss_pred CC-CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 59 LP-PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~-~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+| .+|++.|--..+...|... -+++|--+++-.+.. -..+++++|+|+|||+.+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHHH
Confidence 44 6899998767676666432 233443333333222 357999999999999854
No 349
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.92 E-value=0.082 Score=46.12 Aligned_cols=29 Identities=28% Similarity=0.162 Sum_probs=20.1
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 96 ISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
..|.-+++.|++|+|||...+--+.+.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~ 39 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999754444444443
No 350
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=93.89 E-value=0.094 Score=53.91 Aligned_cols=67 Identities=19% Similarity=0.088 Sum_probs=52.0
Q ss_pred CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 233 RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 233 ~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
....|+++||..|..-+-.+.++++.+..|||||||++.+..-+..+-++...- .+..=+.+|||.-
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~----n~~gfIkafSdsP 72 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK----NKTGFIKAFSDNP 72 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh----CCCcceEEecCCC
Confidence 345799999999977777788999999999999999998776566666666543 2344588888874
No 351
>PRK13764 ATPase; Provisional
Probab=93.88 E-value=0.093 Score=52.08 Aligned_cols=46 Identities=11% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
+++++++++++.+++.+. ..+++++++++||||||.. +-.++..+.
T Consensus 237 ~~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467788887765543332 3467899999999999974 455555554
No 352
>KOG0732|consensus
Probab=93.86 E-value=0.22 Score=51.91 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCC---CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARY---DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~---~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
..+|++.|.-..++.-|+++-. ..|.-+|... +.--+.++.++|.|||||+..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHHH
Confidence 3689999988888888877632 2333333222 223478999999999999854
No 353
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.84 E-value=0.14 Score=47.18 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=21.4
Q ss_pred hHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 94 VIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 94 ~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
++..+++++++++||||||.. +-.++..+
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhC
Confidence 455678999999999999974 34444443
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.82 E-value=0.33 Score=46.23 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
..+++.+|+|+|||....
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997553
No 355
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.81 E-value=0.074 Score=52.24 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+++-+++|+||+-.-+|..-+..+...+..+ .+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~----~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA----LSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----cCCCEEEEEe
Confidence 4566789999999999987777777666654 2344455544
No 356
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.75 E-value=0.33 Score=45.54 Aligned_cols=22 Identities=32% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpi 119 (308)
++-+++.+|+|+|||....--+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999997654443
No 357
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.65 E-value=0.31 Score=42.61 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=19.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
|.-+++.+++|+|||.-.+--+...+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999986554444443
No 358
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.64 E-value=0.067 Score=49.00 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=30.5
Q ss_pred CCCCCCcHHHHHHHhhHhcCC-CEEEEccCCCchhHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGR-DVMACAQTGSGKTAA 114 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~-d~lv~a~TGsGKTla 114 (308)
..|...++-|...+..+..++ |+++++.||||||..
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 346788999999988877765 999999999999973
No 359
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.63 E-value=0.24 Score=46.80 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++--+..++.|... .+.+|...+... +...+.+++.+|+|||||+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHH
Confidence 4677776555555555432 222222222111 112368999999999999754
No 360
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.58 E-value=0.14 Score=49.22 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=33.0
Q ss_pred HHHCCCCCCcHHHHHHHhhHhcCC--CEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 76 IALARYDKPTPVQKYAIPVIISGR--DVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~i~~g~--d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
|.+.|| ++.|...+-.+++.. =+++.+|||||||.. |+.+++.+...
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 444554 466777776666653 378899999999986 56777777654
No 361
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.57 E-value=0.23 Score=42.00 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=21.5
Q ss_pred CCceEEechhhhcccCCCH--HHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 258 NCRFLVLDEADRMLDMGFE--PQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~--~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.-.++||||||.++...-. .....++..+...+..+.-++++|-
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ 124 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQ 124 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeC
Confidence 4468999999998875422 2233444544333334455665553
No 362
>PRK10436 hypothetical protein; Provisional
Probab=93.56 E-value=0.11 Score=50.22 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
.++++||+++..++.+.++ .-..+.-+++++|||||||... ..++..+.
T Consensus 195 ~~L~~LG~~~~~~~~l~~~--------------~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQA--------------LQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CCHHHcCcCHHHHHHHHHH--------------HHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 4666666666655444321 1123346899999999999864 45566553
No 363
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.51 E-value=0.72 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpi 119 (308)
.+..+++.+++|+|||..+..-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34688999999999998765443
No 364
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.49 E-value=0.045 Score=52.89 Aligned_cols=50 Identities=32% Similarity=0.365 Sum_probs=38.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 169 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~ 169 (308)
.++++.|+||||||..|++|.+-. .. -.++|.-|-.||.......+++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~------------------~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YP------------------GSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---cc------------------CCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999997632 11 147888888888888777666653
No 365
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.47 E-value=0.97 Score=42.18 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=29.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHhH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~l 116 (308)
|.+|+++.-++.+.+.|... +..| +.++++||.|+|||....
T Consensus 13 P~~~~~iig~~~~~~~l~~~---------------i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNA---------------IENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHH
Confidence 67899987777776665421 1122 478999999999997654
No 366
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.42 E-value=0.7 Score=44.99 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=83.2
Q ss_pred CCcHHHHHHHhhHhc------C----CCEEEEccCCCchhHHhH-HHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q psy12758 83 KPTPVQKYAIPVIIS------G----RDVMACAQTGSGKTAAFL-VPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVL 151 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~------g----~d~lv~a~TGsGKTla~l-lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~ 151 (308)
..-|+|.-++-.++. | +..+|..|-+-|||.... +.....+....
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~------------------------ 116 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR------------------------ 116 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh------------------------
Confidence 556999999988872 2 467899999999996443 22222222211
Q ss_pred ccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh
Q psy12758 152 APTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL 231 (308)
Q Consensus 152 ~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 231 (308)
..-...|++|+.+-+.+.++.++....... +.... .
T Consensus 117 -------------------------------~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~--------~l~~~-----~ 152 (546)
T COG4626 117 -------------------------------SGAGIYILAPSVEQAANSFNPARDMVKRDD--------DLRDL-----C 152 (546)
T ss_pred -------------------------------cCCcEEEEeccHHHHHHhhHHHHHHHHhCc--------chhhh-----h
Confidence 114467888888888888888887765543 00000 0
Q ss_pred cCCCeEEEECcHHHHH---HHHc--CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 232 DRGCHLLVATPGRLVD---MLER--GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 232 ~~~~~IlV~TP~~L~~---~l~~--~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
....+-...+...... .+.. +..+=.+..+.|+||.|...+.+ +.+..+..-+.. .++.+++..|-
T Consensus 153 ~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~a--r~~~l~~~ITT 223 (546)
T COG4626 153 NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLGA--RPEGLVVYITT 223 (546)
T ss_pred ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhcc--CcCceEEEEec
Confidence 0111222222222222 2222 22333455689999999877653 555556555433 34667776653
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.38 E-value=0.1 Score=45.18 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=21.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
.|.-+++.+++|||||.-.+--+...+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~ 46 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN 46 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh
Confidence 34689999999999998655545554443
No 368
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.33 E-value=0.91 Score=43.19 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=16.5
Q ss_pred CEEEEccCCCchhHHhHHHHHH
Q psy12758 100 DVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil~ 121 (308)
-+++.+|+|+|||....--+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999876544433
No 369
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.32 E-value=0.5 Score=48.78 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|..+++.+|+|+|||...
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999754
No 370
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.31 E-value=0.67 Score=42.51 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=18.6
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcC
Q psy12758 102 MACAQTGSGKTAAFLVPILNQMYERG 127 (308)
Q Consensus 102 lv~a~TGsGKTla~llpil~~l~~~~ 127 (308)
++.++.|+|||.+....++..+...+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~ 26 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP 26 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC
Confidence 46789999999998888887776553
No 371
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.26 E-value=0.14 Score=50.62 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHH
Q psy12758 83 KPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~ll 117 (308)
.-+|+|.+.+..+... +.++++.++-+|||...+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n 52 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN 52 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh
Confidence 4578888888887765 6899999999999995444
No 372
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.25 E-value=0.097 Score=49.39 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=36.0
Q ss_pred hhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHH
Q psy12758 93 PVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYD 163 (308)
Q Consensus 93 p~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~ 163 (308)
|.-...+++++.+.||||||. ++-.++..+...+ .+++|.-|.-+.....++
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~g------------------~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRARG------------------DRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHTT-------------------EEEEEEETTHHHHHH--
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHcC------------------CEEEEEECCchHHHHhcC
Confidence 444567899999999999997 5567777776664 367888888888776666
No 373
>KOG0339|consensus
Probab=93.24 E-value=0.61 Score=44.88 Aligned_cols=25 Identities=64% Similarity=1.097 Sum_probs=22.7
Q ss_pred ccccccccchHHHHHHHHHHHHHHh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~ 170 (308)
+-++|++|||||+.|++.++++|..
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhh
Confidence 6789999999999999999999943
No 374
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.24 E-value=0.57 Score=43.97 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|.-+++.+++|+|||...+-
T Consensus 82 GslvLI~G~pG~GKStLllq 101 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH
Confidence 46789999999999985443
No 375
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=1.9 Score=39.54 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=32.0
Q ss_pred EECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 239 VATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|-....+.+.+....+ ...-+++|||+||.|-. ..-..++..+-.| + +..+|+.+
T Consensus 106 id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEP-p-~~~fILi~ 160 (314)
T PRK07399 106 LEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEP-G-NGTLILIA 160 (314)
T ss_pred HHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCC-C-CCeEEEEE
Confidence 3333345555555444 36788999999999854 3445555555343 2 45455544
No 376
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.02 E-value=6.2 Score=39.78 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=60.9
Q ss_pred cccccccCCHH--------hHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcC
Q psy12758 185 PLGLVLAPTRE--------LATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERG 252 (308)
Q Consensus 185 ~~~lil~Ptre--------L~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~ 252 (308)
.+++|++|+.+ -+.++++.+.... .++++..++|+.+..+....+ ....+|||||. +-..
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~------vie~ 520 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT------VIEV 520 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc------eeec
Confidence 56888888763 2344455554432 467899999998876554433 34689999995 3345
Q ss_pred CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 253 KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 253 ~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
.+++.+++++|+..+++.. ..++.++..+.+.
T Consensus 521 GvDiP~v~~VIi~~~~r~g----ls~lhQ~~GRvGR 552 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFG----LSQLHQLRGRVGR 552 (630)
T ss_pred CcccCCCcEEEEeCCCcCC----HHHHHHHhhhccc
Confidence 6778999999998888642 2455555555543
No 377
>PHA00729 NTP-binding motif containing protein
Probab=92.92 E-value=0.38 Score=41.77 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
++++.+++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999644
No 378
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.92 E-value=0.6 Score=47.67 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
.++++.+|+|+|||....
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997543
No 379
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.88 E-value=0.16 Score=50.31 Aligned_cols=37 Identities=35% Similarity=0.378 Sum_probs=24.1
Q ss_pred HHHHHHHhhHhc--CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 86 PVQKYAIPVIIS--GRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 86 ~iQ~~~ip~i~~--g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
+-|.+.+..+.. ..-+++++|||||||... ..++..+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444444444443 246789999999999864 5566655
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.78 E-value=0.88 Score=40.77 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpi 119 (308)
+-+++.+++|+|||....-.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 467888999999997654333
No 381
>PF05729 NACHT: NACHT domain
Probab=92.76 E-value=0.52 Score=37.90 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=17.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 100 DVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
-+++.|+.|+|||... --++..+..
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHh
Confidence 3789999999999854 334444433
No 382
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.75 E-value=0.47 Score=45.44 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12758 99 RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ll 117 (308)
..+++++++|+|||....-
T Consensus 96 ~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4688999999999986543
No 383
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.71 E-value=0.95 Score=38.55 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHH
Q psy12758 98 GRDVMACAQTGSGKTAA 114 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla 114 (308)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36889999999999983
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=92.67 E-value=0.55 Score=41.19 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHH---------hhHhcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 66 IQMTEIITNNIALARYDKPTPVQKYAI---------PVIISGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 66 l~l~~~l~~~L~~~~~~~pt~iQ~~~i---------p~i~~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
..+++.+-+.-.+-||...+.+...+- .-+..|.-++|.|++|+|||...+--+.+.
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345555555455667776555554433 223345678999999999998655444443
No 385
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.63 E-value=0.23 Score=49.19 Aligned_cols=41 Identities=34% Similarity=0.399 Sum_probs=29.2
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+++-++||+|||-.-+|..-+..+...+..+ .+++.+++.+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l----~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL----LKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH----hcCCEEEEEe
Confidence 4455789999999999988887777777654 2344555544
No 386
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.58 E-value=0.74 Score=39.80 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPIL 120 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil 120 (308)
.|..+++.+++|+|||...+--+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999875543333
No 387
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=0.63 Score=42.69 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=28.9
Q ss_pred CCCCcHHHHHHHhhHh----cCC---CEEEEccCCCchhHHhHHH
Q psy12758 81 YDKPTPVQKYAIPVII----SGR---DVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~----~g~---d~lv~a~TGsGKTla~llp 118 (308)
+..++|||..++..+. +|+ -+++.+|.|+||+.....-
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l 46 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL 46 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 4567899999987766 343 4899999999999765443
No 388
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.47 E-value=0.89 Score=39.51 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=17.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~ 121 (308)
|.-+++.+++|+|||.-..--+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 467889999999999755444333
No 389
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.39 E-value=2.2 Score=43.13 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=64.9
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCC
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANC 259 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~ 259 (308)
+.+++|.++|+..+..+.+.+... ++.+..++|+.........+ ....+|+||| +.+. ..+++.++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v 511 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEV 511 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCC
Confidence 367899999999999998888765 57778888887654443322 3468999999 4444 45668999
Q ss_pred ceEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 260 RFLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 260 ~~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
+++|+-++|...-......+-+.+.+...
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR 540 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAAR 540 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCC
Confidence 99998888865333233344444444433
No 390
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.31 E-value=0.078 Score=52.80 Aligned_cols=49 Identities=24% Similarity=0.154 Sum_probs=38.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.++++.||||||||..|++|-|... + -.++|.-|-.|+...-....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---~------------------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---E------------------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---C------------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 5789999999999999999987642 1 24788888888887777666664
No 391
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.26 E-value=0.14 Score=45.36 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=27.6
Q ss_pred CCCCccCCCCCHHHHHH-HHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNN-IALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~-L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+.|+|++|+||+.+.+- +.+.| =+++.++|||||+...
T Consensus 106 ~IPt~eeL~LPevlk~la~~kRG-------------------LviiVGaTGSGKSTtm 144 (375)
T COG5008 106 KIPTFEELKLPEVLKDLALAKRG-------------------LVIIVGATGSGKSTTM 144 (375)
T ss_pred cCCcHHhcCCcHHHHHhhcccCc-------------------eEEEECCCCCCchhhH
Confidence 34789999999876652 22222 4788999999998764
No 392
>CHL00176 ftsH cell division protein; Validated
Probab=92.24 E-value=0.41 Score=48.13 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+.+++.+|+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999854
No 393
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.23 E-value=0.65 Score=47.65 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
..++++.+++|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 369999999999999864
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.21 E-value=0.19 Score=42.19 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.7
Q ss_pred HHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHh
Q psy12758 76 IALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~ 115 (308)
|.+.|+- ++-|...+.. +..|..+++.++||||||...
T Consensus 4 l~~~g~~--~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGTF--SPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4445543 4556666655 446789999999999999754
No 395
>KOG0058|consensus
Probab=92.14 E-value=0.37 Score=48.24 Aligned_cols=31 Identities=35% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+++-+.||+|||-.-+|..-+..++..+.++
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHh
Confidence 4566779999999999998888888888765
No 396
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.11 E-value=1.2 Score=41.76 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhHH
Q psy12758 99 RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ll 117 (308)
.+.|+.+|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4899999999999986533
No 397
>PF12846 AAA_10: AAA-like domain
Probab=92.10 E-value=0.22 Score=44.47 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=29.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
+++++.|+||+|||.... .++..+...+ ..++++-|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~g------------------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRRG------------------PRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHcC------------------CCEEEEcCCchHHH
Confidence 588999999999998776 5555554443 35666666655555
No 398
>KOG0333|consensus
Probab=91.95 E-value=0.71 Score=44.59 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=55.5
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCC
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANC 259 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~ 259 (308)
.|.++|.+.++.-|.-+++.+.+. +++++.++||....+....| .+..+|+|||- +..+.+++.++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCcc
Confidence 388899999999888888887775 58999999999988776655 23689999995 34455778888
Q ss_pred ceEE
Q psy12758 260 RFLV 263 (308)
Q Consensus 260 ~~lV 263 (308)
.++|
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8775
No 399
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.91 E-value=0.51 Score=40.14 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~ 121 (308)
|.=+.+.+++|+|||...+-.+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999876544443
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.90 E-value=0.21 Score=44.51 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.2
Q ss_pred HHHHHhhHhc--CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 88 QKYAIPVIIS--GRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 88 Q~~~ip~i~~--g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
|.+.+..++. +.-+++.++||||||... ..++..+
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4444443332 346899999999999854 4455544
No 401
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.81 E-value=2.3 Score=39.22 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.4
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
++.++|+|||.+ +-|.+-...+.++++.|- ..+..+++.|-|-|+++
T Consensus 129 ~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf---~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 129 AETRVLCFDEFE-VTDIADAMILGRLLEALF---ARGVVLVATSNTAPDNL 175 (367)
T ss_pred hcCCEEEeeeee-ecChHHHHHHHHHHHHHH---HCCcEEEEeCCCChHHh
Confidence 566789999998 566665566667776652 34788999999988764
No 402
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.80 E-value=0.098 Score=52.70 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.++++.||||||||.+|++|-|... + -.++|+-|..|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---~------------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---K------------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---C------------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 5899999999999999999986532 1 14677777777776655444443
No 403
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.75 E-value=7.4 Score=39.63 Aligned_cols=92 Identities=21% Similarity=0.279 Sum_probs=59.7
Q ss_pred cccccccCCHH--------hHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcC
Q psy12758 185 PLGLVLAPTRE--------LATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERG 252 (308)
Q Consensus 185 ~~~lil~Ptre--------L~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~ 252 (308)
.+++|+||+.+ -+..+++.+.... .++++..++|+.+..+....+ ....+|||||. . -..
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----v-ie~ 543 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAF--PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----V-IEV 543 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----c-eee
Confidence 57889998643 2334444444432 247899999998776554433 34579999994 3 335
Q ss_pred CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 253 KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 253 ~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
.+++.+++++|+..++++. ..++.++..+.+.
T Consensus 544 GiDip~v~~VIi~~~~r~g----ls~lhQ~~GRvGR 575 (681)
T PRK10917 544 GVDVPNATVMVIENAERFG----LAQLHQLRGRVGR 575 (681)
T ss_pred CcccCCCcEEEEeCCCCCC----HHHHHHHhhcccC
Confidence 5778999999999888642 2345555555544
No 404
>KOG0744|consensus
Probab=91.72 E-value=1.1 Score=40.89 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=14.0
Q ss_pred CCCEEEEccCCCchhH
Q psy12758 98 GRDVMACAQTGSGKTA 113 (308)
Q Consensus 98 g~d~lv~a~TGsGKTl 113 (308)
+|=+++++|+|+|||-
T Consensus 177 NRliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS 192 (423)
T ss_pred eeEEEEeCCCCCChhH
Confidence 4668999999999995
No 405
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.65 E-value=0.21 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
+..+++++|||||||... ..++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 567999999999999854 3444444
No 406
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.64 E-value=0.82 Score=46.90 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++-.+.+.+.|.+. .+.+|.-++..- +...+.+++.+|+|||||+..
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 5789888888887777653 222332222211 122367999999999999754
No 407
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=91.63 E-value=0.17 Score=50.91 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=49.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHhh--HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccc
Q psy12758 69 TEIITNNIALARYDKPTPVQKYAIPV--IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFP 146 (308)
Q Consensus 69 ~~~l~~~L~~~~~~~pt~iQ~~~ip~--i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (308)
+..+.+.|++.|-..+ +--.-+|. -.+.+++++.+.||||||.++ .-+|..+..++ -
T Consensus 156 ~~~l~k~lk~~~~~s~--i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~RG------------------d 214 (732)
T PRK13700 156 PKDVARMLKKDGKDSD--IRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQRG------------------D 214 (732)
T ss_pred HHHHHHHHHhcCCCCC--eeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHHcC------------------C
Confidence 3567777877765544 33334444 446699999999999999954 55666665554 3
Q ss_pred cccccccchHHHHHHHH
Q psy12758 147 LGLVLAPTRELATQIYD 163 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~ 163 (308)
+++|.-|+.+.....|+
T Consensus 215 rAIIyD~~GeFv~~FY~ 231 (732)
T PRK13700 215 MVVIYDRSGEFVKSYYD 231 (732)
T ss_pred eEEEEeCCCchHHHhcC
Confidence 66777777766665554
No 408
>KOG0731|consensus
Probab=91.58 E-value=2 Score=43.68 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCCccCCCCCHHHHHHHHHC--CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALA--RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~--~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
..+|.+..-+++....|.+. -.++|-.+|..-+. --|.+++++|+|||||+.+
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAK---iPkGvLL~GPPGTGKTLLA 361 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAK---IPKGVLLVGPPGTGKTLLA 361 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCc---CcCceEEECCCCCcHHHHH
Confidence 46899986666666555442 23466666655331 1278999999999999854
No 409
>KOG0060|consensus
Probab=91.54 E-value=0.17 Score=49.39 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=32.6
Q ss_pred CcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcC
Q psy12758 241 TPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENG 287 (308)
Q Consensus 241 TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~ 287 (308)
.||-...+--.+ +...+-++.|+||+-.-++.+.+..|.++++..+
T Consensus 572 S~GEqQRLa~AR-Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 572 SPGEQQRLAFAR-LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred CHHHHHHHHHHH-HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 555554432222 2245667899999999999989999999888753
No 410
>KOG3089|consensus
Probab=91.53 E-value=0.075 Score=45.29 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=31.4
Q ss_pred cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEech
Q psy12758 232 DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDE 266 (308)
Q Consensus 232 ~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDE 266 (308)
++..++-||||+|+..+++...+.++.+.++|+|=
T Consensus 194 ~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 194 KRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred hcceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 34578999999999999999989999999999983
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.52 E-value=0.87 Score=43.54 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=15.7
Q ss_pred CEEEEccCCCchhHHhHHHH
Q psy12758 100 DVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpi 119 (308)
-+++++++|+|||....--+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57899999999998754333
No 412
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.42 E-value=0.22 Score=46.24 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=21.8
Q ss_pred HHhhHhcCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 91 AIPVIISGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 91 ~ip~i~~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
..-++..+++++++++||||||.. +-.++.
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTl-l~aLl~ 184 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTM-SKTLIS 184 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHH-HHHHHc
Confidence 334455789999999999999974 333443
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=91.41 E-value=1.3 Score=42.48 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.0
Q ss_pred CEEEEccCCCchhHHhHHH
Q psy12758 100 DVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llp 118 (308)
-+++++++|+|||....--
T Consensus 102 vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4789999999999865433
No 414
>PTZ00293 thymidine kinase; Provisional
Probab=91.08 E-value=1.5 Score=37.70 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|+=.++.+|.+||||.-.+-
T Consensus 4 G~i~vi~GpMfSGKTteLLr 23 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR 23 (211)
T ss_pred eEEEEEECCCCChHHHHHHH
Confidence 44457899999999964433
No 415
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=90.97 E-value=0.32 Score=48.13 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=29.4
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
+++-+++++||+-.-+|...+..+...+..+ .+++-+|+.|-
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~----~~~~tiIiitH 526 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERL----MQGRTTLVIAH 526 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHH----hCCCEEEEEeh
Confidence 3455679999999999988887777766654 22445555553
No 416
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=0.14 Score=46.47 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcC
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYERG 127 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~~~ 127 (308)
+..|+++.+|||||||+.+ -.|.++++-+
T Consensus 96 ~KSNILLiGPTGsGKTlLA--qTLAk~LnVP 124 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA--QTLAKILNVP 124 (408)
T ss_pred eeccEEEECCCCCcHHHHH--HHHHHHhCCC
Confidence 3468999999999999743 4555666554
No 417
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.87 E-value=0.33 Score=47.27 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=23.1
Q ss_pred HHHHHHHhhHhcC-C-CEEEEccCCCchhHHhHHHHHHHH
Q psy12758 86 PVQKYAIPVIISG-R-DVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 86 ~iQ~~~ip~i~~g-~-d~lv~a~TGsGKTla~llpil~~l 123 (308)
+-|.+.+..+... + -+++++|||||||... ..++..+
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3344444444433 3 3689999999999864 3345554
No 418
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.83 E-value=0.33 Score=50.62 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.++++.+++|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999865
No 419
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.81 E-value=0.23 Score=47.29 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=35.2
Q ss_pred HhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 92 IPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 92 ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
+|.-...+++++.|+||||||.. +..++..+...+ .+++|+-|..++....
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~~------------------~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRARG------------------DRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhcC------------------CCEEEEeCCcchhHhh
Confidence 44445568999999999999985 445555555443 3577788877766543
No 420
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.72 E-value=1.3 Score=47.53 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=23.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
.+++|.+.||||||.+....++..++..
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~ 1038 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKA 1038 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999998777777766654
No 421
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.71 E-value=1.6 Score=43.27 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=75.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccc
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 178 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~ 178 (308)
|-.+.--|---|||. |++|++..++..-.
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~-------------------------------------------------- 231 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNII-------------------------------------------------- 231 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhc--------------------------------------------------
Confidence 556788899999997 78999998876421
Q ss_pred cccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHH-----HHHHcCC
Q psy12758 179 VRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLV-----DMLERGK 253 (308)
Q Consensus 179 ~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~-----~~l~~~~ 253 (308)
+.++-+++.-|.-++-+.+++...++.. +++..... .++-.|.+.-||.=- .-.+.+.
T Consensus 232 -----gI~IGYvAHqKhvs~~Vf~EI~~~lrrw-------F~~~~vi~-----~k~~tI~~s~pg~Kst~~fasc~n~Ns 294 (668)
T PHA03372 232 -----GISIGYVAHQKHVSQFVLKEVEFRCRRM-------FPRKHTIE-----NKDNVISIDHRGAKSTALFASCYNTNS 294 (668)
T ss_pred -----CceEEEEeeHHHHHHHHHHHHHHHHhhh-------cCccceee-----ecCcEEEEecCCCcceeeehhhccCcc
Confidence 1456666666666666555554333211 11111000 012235555443321 1112334
Q ss_pred cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 254 IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 254 ~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+.=.+.++|++||||.+- .+.+..|+-.+. ..++.+|..|.|-
T Consensus 295 iRGQ~fnll~VDEA~FI~----~~a~~tilgfm~---q~~~KiIfISS~N 337 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIK----KDAFNTILGFLA---QNTTKIIFISSTN 337 (668)
T ss_pred ccCCCCCEEEEehhhccC----HHHHHHhhhhhc---ccCceEEEEeCCC
Confidence 555678899999999663 356677777653 4567788888774
No 422
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.71 E-value=0.57 Score=47.75 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=33.8
Q ss_pred ceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 260 RFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 260 ~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
-+||||+.|.+-+..-...|+.++++. |.+.+.++.|=+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~----P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHA----PENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhC----CCCeEEEEEeccCC
Confidence 489999999999988778899999886 66778888776555
No 423
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.60 E-value=0.25 Score=43.91 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 89 KYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 89 ~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
..++..+..|+++++.+++|+|||....
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445556688999999999999998754
No 424
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.60 E-value=1.1 Score=44.61 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=54.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.|+|++.+.++++.+... ++.+..++|+....++.+.+ ....+||||| +.+. ..+++.+++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~V~ 327 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDGVK 327 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccCCC
Confidence 57899999999999999888764 57899999998876655444 3467999999 4444 446678888
Q ss_pred eEEech
Q psy12758 261 FLVLDE 266 (308)
Q Consensus 261 ~lViDE 266 (308)
++|.-+
T Consensus 328 ~VInyd 333 (572)
T PRK04537 328 YVYNYD 333 (572)
T ss_pred EEEEcC
Confidence 877543
No 425
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.57 E-value=2.4 Score=38.89 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++-+++.+|+|+|||...
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 356788999999999764
No 426
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.56 E-value=0.99 Score=43.05 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=24.9
Q ss_pred CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 80 RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
|+.+..+-=-..+.-+..|.=+++.|.+|+|||...+--+.+.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3433333333333333445667889999999998655444343
No 427
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.56 E-value=3.1 Score=35.19 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 96 ISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
.....+++..++|.|||.+.+--++..+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 3456899999999999999877666554
No 428
>KOG1001|consensus
Probab=90.55 E-value=0.59 Score=47.19 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=48.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEe
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVL 264 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lVi 264 (308)
...||+||+-- ..|...++.+......+.+.+.+| ....... ..+.+|+++|++.+.. ..+.--..-.+|+
T Consensus 190 kttLivcp~s~-~~qW~~elek~~~~~~l~v~v~~g---r~kd~~e-l~~~dVVltTy~il~~----~~l~~i~w~Riil 260 (674)
T KOG1001|consen 190 KTTLIVCPTSL-LTQWKTELEKVTEEDKLSIYVYHG---RTKDKSE-LNSYDVVLTTYDILKN----SPLVKIKWLRIVL 260 (674)
T ss_pred CceeEecchHH-HHHHHHHHhccCCccceEEEEecc---cccccch-hcCCceEEeeHHHhhc----ccccceeEEEEEe
Confidence 44677777544 455555556666666676666776 1111112 2457899999987764 1111112235899
Q ss_pred chhhhcccCC
Q psy12758 265 DEADRMLDMG 274 (308)
Q Consensus 265 DEad~ll~~~ 274 (308)
||||.+-...
T Consensus 261 dea~~ikn~~ 270 (674)
T KOG1001|consen 261 DEAHTIKNKD 270 (674)
T ss_pred ccccccCCcc
Confidence 9999987653
No 429
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.40 E-value=0.44 Score=43.59 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=29.3
Q ss_pred CCCCcHHHHHH-HhhHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 81 YDKPTPVQKYA-IPVIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 81 ~~~pt~iQ~~~-ip~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
+..+++.|..- |-++..+++++++++||||||.. +.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC
Confidence 44566666554 45566779999999999999974 44444433
No 430
>PRK06620 hypothetical protein; Validated
Probab=90.38 E-value=1.3 Score=38.13 Aligned_cols=109 Identities=9% Similarity=0.054 Sum_probs=56.6
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCC-CceEEEecCC--chhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCce
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQ-LRPCVVYGGS--NVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRF 261 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~-~~~~~~~gg~--~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~ 261 (308)
..-.|+.+..+.+......+..-..... .+...+||.. ...+-.+.+.+..+..+.+...... . .....++
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~----~--~~~~~d~ 88 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE----E--ILEKYNA 88 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch----h--HHhcCCE
Confidence 4456777777766655555443111111 1457788854 3344444444334444444222111 1 1245578
Q ss_pred EEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 262 LVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 262 lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
|+|||+|.+-+ ..+-.+++.+. ..++|+++.|-|-|.+
T Consensus 89 lliDdi~~~~~----~~lf~l~N~~~---e~g~~ilits~~~p~~ 126 (214)
T PRK06620 89 FIIEDIENWQE----PALLHIFNIIN---EKQKYLLLTSSDKSRN 126 (214)
T ss_pred EEEeccccchH----HHHHHHHHHHH---hcCCEEEEEcCCCccc
Confidence 99999996522 34555555543 2356776666666654
No 431
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.32 E-value=2.4 Score=37.44 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=31.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHH---HHhhHhcCC-CEEEEccCCCchhHHhHHHHHH
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKY---AIPVIISGR-DVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~---~ip~i~~g~-d~lv~a~TGsGKTla~llpil~ 121 (308)
.|+.++++..+...+.. .+.+.+.. +-+.+..|+ =+.++++-|||||..-- .++.
T Consensus 15 g~~~~pf~~~~~~~~~~----~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~ 73 (269)
T COG3267 15 GFSRLPFSWDIQPGLDY----WAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLA 73 (269)
T ss_pred hhccCCCccchhhhhhh----hhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHH
Confidence 35666666555544421 22233322 223455565 68899999999998766 4443
No 432
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.28 E-value=0.91 Score=47.42 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.7
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
.+.++.+|+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999998653
No 433
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.23 E-value=0.33 Score=40.55 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.+-+++++||.+.-+|......+..++..+. ..+.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~---~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMA---KHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hCCCEEEEEEC
Confidence 5668899999999999877777666666542 22467777664
No 434
>PRK09087 hypothetical protein; Validated
Probab=90.20 E-value=1.1 Score=38.85 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++-+++.+++|+|||.-.
T Consensus 44 ~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345999999999999743
No 435
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.16 E-value=5.7 Score=36.55 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
...-+++||||||.|-. ..-..++..+-.| +....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~----~a~NaLLK~LEEP-p~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA----SAANSLLKFLEEP-SGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH----HHHHHHHHHhcCC-CCCceEEE-EeC
Confidence 45678999999998854 3445566655333 33444444 443
No 436
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=90.06 E-value=0.39 Score=47.61 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
+++-+++++||+-.-+|...+..+...+..+ .+++.+|+.|.
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~----~~~~t~IiitH 533 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETL----MKGRTTLIIAH 533 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHH----hCCCEEEEEec
Confidence 3566789999999999987777776666654 12455665554
No 437
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.05 E-value=1.7 Score=41.15 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|+-+++.+++|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 678899999999999974
No 438
>KOG1015|consensus
Probab=90.03 E-value=1.9 Score=44.74 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=13.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|-..|+.-..|-|||+-.
T Consensus 696 GsGcILAHcMGLGKTlQV 713 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQV 713 (1567)
T ss_pred CcchHHHHhhcccceehh
Confidence 456777778999999864
No 439
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.02 E-value=0.2 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~ 122 (308)
.++++.||||||||.++++|-|..
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~ 168 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLT 168 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHh
Confidence 689999999999999999997754
No 440
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.92 E-value=0.17 Score=50.87 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.++++.|+||+|||..+++|-+- .-+ -.++++-|..|+........++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL---~~~------------------gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTAL---KWG------------------GPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhh---cCC------------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 58999999999999999999753 211 24677778888877666655444
No 441
>PTZ00110 helicase; Provisional
Probab=89.78 E-value=2.4 Score=41.94 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=52.9
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCC
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANC 259 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~ 259 (308)
..++||.|++++-|..++..++. .++.+..++|+....++...+ ....+|||||. .+ ...+++.++
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~-~rGIDi~~v 446 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VA-SRGLDVKDV 446 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hh-hcCCCcccC
Confidence 36899999999999999888764 357788899998876654433 23578999994 33 345667888
Q ss_pred ceEEe
Q psy12758 260 RFLVL 264 (308)
Q Consensus 260 ~~lVi 264 (308)
+++|.
T Consensus 447 ~~VI~ 451 (545)
T PTZ00110 447 KYVIN 451 (545)
T ss_pred CEEEE
Confidence 88774
No 442
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.64 E-value=0.25 Score=50.30 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+++-+++|+||+=.-+|..-+..+...+..+ ..++.+++.|
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~----~~~~T~iiIt 657 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRW----LAGKTLVLVT 657 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH----hCCCEEEEEe
Confidence 4566789999999888887777777666654 2244455544
No 443
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.55 E-value=0.3 Score=45.60 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-+++.+|.|+|||+..
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 46789999999999854
No 444
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.49 E-value=2.5 Score=38.03 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=28.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC----CCEEEEccCCCchhHHhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG----RDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g----~d~lv~a~TGsGKTla~ll 117 (308)
|..|+++-=-+.+.+.|. -.|.+.... .++++.+|+|.|||..+.+
T Consensus 22 P~~l~efiGQ~~vk~~L~------------ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQ------------IFIKAAKKRGEALDHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred cccHHHhcChHHHHHHHH------------HHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHH
Confidence 567777644555555552 233333322 4789999999999975543
No 445
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.45 E-value=1.9 Score=46.52 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=42.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 169 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~ 169 (308)
.++++|.|+.|||||....-=++..+.... ...++++++-|+.-+..+.+++.+..
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~----------------~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV----------------PPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC----------------CCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 468999999999999987766666664321 12368999999999988888877753
No 446
>PF13479 AAA_24: AAA domain
Probab=89.34 E-value=0.39 Score=41.30 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=22.3
Q ss_pred eEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcc
Q psy12758 236 HLLVATPGRLVDMLERGKIGLANCRFLVLDEADRML 271 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll 271 (308)
.|-|.++..|.+.+..-.-....++.||||-++.+.
T Consensus 46 ~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 46 VIPITSWEDFLEALDELEEDEADYDTIVIDSISWLE 81 (213)
T ss_pred eeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHH
Confidence 455557777777654321125677888888777653
No 447
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.28 E-value=0.23 Score=49.43 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=28.9
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+++-+++|+||+=.-+|..-+..+...+..+ .+++-+|+.|
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~----~~~~TvIiIt 541 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAA----SRRQTTLMVT 541 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH----hCCCEEEEEe
Confidence 4556789999999999987777777666654 2345555555
No 448
>PRK04328 hypothetical protein; Provisional
Probab=89.28 E-value=2.3 Score=37.44 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=18.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
.|.-+++.+++|+|||.-.+--+...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999987554444443
No 449
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.19 E-value=4.6 Score=33.10 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCCCceEEechhhhcccCCC--HHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 256 LANCRFLVLDEADRMLDMGF--EPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f--~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
....++||+||+=..++.++ .+++..++..- +...-+|+.+-..|+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~~p~ 140 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRNAPK 140 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCCCCH
Confidence 45788999999998888775 44555555542 334445554444444
No 450
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.10 E-value=0.73 Score=46.36 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=34.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH--HHHHHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE--LATQIYDEAKKF 168 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~--l~~q~~~~~~~~ 168 (308)
.+++++.|+||+|||..+..-+.+.+... ..++++-|-.. |...++..+++.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g-------------------~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRG-------------------DVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcC-------------------CeEEEEeCCCchHHHHHHHHHHHHh
Confidence 36899999999999988755555554322 23555666543 666666666665
No 451
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.06 E-value=1.2 Score=42.37 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=52.1
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.|+++..|..+++.+... ++++..++|+....++...+ ...++|||||. .+. ..+++.+++
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v~ 325 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAVT 325 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccccC
Confidence 56899999999999888887653 67889999998776655443 34689999994 333 446677777
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 326 ~VI~ 329 (423)
T PRK04837 326 HVFN 329 (423)
T ss_pred EEEE
Confidence 6653
No 452
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=88.96 E-value=3.2 Score=40.82 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=53.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
+++||.++++.-+..+++.+... .++++..++|+....++...+ ....+|||+|. .+. ..+++.+++
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v~ 438 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRVR 438 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccCC
Confidence 67899999999998888776543 367888899998876665444 34679999995 333 446678888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 439 ~VI~ 442 (518)
T PLN00206 439 QVII 442 (518)
T ss_pred EEEE
Confidence 8874
No 453
>PRK13695 putative NTPase; Provisional
Probab=88.91 E-value=2.9 Score=34.46 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q psy12758 100 DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 100 d~lv~a~TGsGKTla~l 116 (308)
.+++.+++|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998654
No 454
>KOG0335|consensus
Probab=88.88 E-value=0.27 Score=47.06 Aligned_cols=33 Identities=58% Similarity=0.956 Sum_probs=28.6
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhhcCCccc
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 178 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~ 178 (308)
++++|+.|||||+.|++++.+++...+..+...
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~ 185 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVV 185 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeee
Confidence 578999999999999999999998877665533
No 455
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.80 E-value=0.28 Score=43.95 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=17.9
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+++.++++||+|+|||...
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHH
Confidence 446789999999999999853
No 456
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.76 E-value=6.6 Score=32.12 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=13.7
Q ss_pred EEEEccCCCchhHHhHH
Q psy12758 101 VMACAQTGSGKTAAFLV 117 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ll 117 (308)
+++.+++|+|||....-
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999987533
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.59 E-value=0.48 Score=42.16 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=31.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHh-hHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIP-VIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip-~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
.+.++++|.....+.+. ..+.+. .+..+.+++++++||||||... -.++..+
T Consensus 99 ~~~sle~l~~~~~~~~~------------~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i 151 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEE------------IAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEI 151 (270)
T ss_dssp S--CHCCCCHTHHCHHH------------HHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHC
T ss_pred ccccHhhccCchhhHHH------------HHHHHhhccccceEEEEECCCccccchHH-HHHhhhc
Confidence 34577777655543322 222232 3456789999999999999754 4445544
No 458
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=88.55 E-value=0.67 Score=46.08 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
++-+++|+||+-.-+|..-+..+...+..+ ..++-+|+.|.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~----~~~~tvI~VtH 537 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDEL----QKNRTSLVIAH 537 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHH----hCCCEEEEEec
Confidence 455679999999999987776666666654 23455565553
No 459
>PRK06904 replicative DNA helicase; Validated
Probab=88.24 E-value=5.3 Score=38.79 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCceEEechhhhcccCC----CHHHHHHHHHhcCCC-CCCCceEEEEe
Q psy12758 258 NCRFLVLDEADRMLDMG----FEPQIRCIVQENGMP-RTGDRQTLMFS 300 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~----f~~~l~~i~~~l~~~-~~~~~q~i~~S 300 (308)
.++++|||=.+.|-..+ ....+..|.+.|+.. ..-+..++++|
T Consensus 334 ~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~ls 381 (472)
T PRK06904 334 GLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALS 381 (472)
T ss_pred CCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 57899999998775433 233445554443211 12245566665
No 460
>KOG1806|consensus
Probab=88.23 E-value=1.5 Score=45.66 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=82.9
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.++...|+-|-++|-.-....++++.+|+|+|||-... -++.-++.+ .+..+.+|++.++.-.
T Consensus 734 ~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~lyhn----------------~p~qrTlivthsnqal 796 (1320)
T KOG1806|consen 734 KNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLYHN----------------SPNQRTLIVTHSNQAL 796 (1320)
T ss_pred cchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhhhc----------------CCCcceEEEEecccch
Confidence 34556688999998888888999999999999997653 344444433 2346889999999888
Q ss_pred HHHHHHHHHHHhhhc-----------CCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchh
Q psy12758 159 TQIYDEAKKFAYRSQ-----------LRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVG 225 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 225 (308)
.|..+...+...... ...-......+....+++-.-+|...+.+-++.+.....++.++..+|....
T Consensus 797 n~lfeKi~~~d~d~rhLlrlg~ge~eletd~dfsrygrvn~~l~~r~~ll~ev~rla~sl~~pgdv~ytcetagyf~~ 874 (1320)
T KOG1806|consen 797 NQLFEKIMALDVDERHLLRLGHGEEELETDKDFSRYGRVNYVLSRRLELLREVERLAKSLQAPGDVDYTCETAGYFFL 874 (1320)
T ss_pred hHHHHHHHhcccchhhHHHhcccHHhhhcccchhheeeEeeeeccchHHHHHHHHhhhhhcCccccccccchhhhhhh
Confidence 888886655432221 1111111111222334455557777777777766666667777777765543
No 461
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.21 E-value=0.58 Score=46.45 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+.+-+++++||+-.-+|......+...+..+
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4566789999999999987777776666654
No 462
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.16 E-value=2.6 Score=37.42 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
.|.-+++.+++|+|||...+--+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999865444443
No 463
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.11 E-value=3.4 Score=39.52 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPIL 120 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil 120 (308)
.|.=+++.|++|+|||...+--+.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~ 217 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAE 217 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHH
Confidence 345678899999999975443333
No 464
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=88.11 E-value=2.2 Score=41.11 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=51.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.|++++-+..+++.+... ++.+..++|+.+..+....+ ....+||||| +.+. ..+++.+++
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v~ 315 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEELP 315 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccCC
Confidence 56899999999999988887653 67888999998876655443 2467899999 4444 346677777
Q ss_pred eEE
Q psy12758 261 FLV 263 (308)
Q Consensus 261 ~lV 263 (308)
++|
T Consensus 316 ~VI 318 (456)
T PRK10590 316 HVV 318 (456)
T ss_pred EEE
Confidence 766
No 465
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.08 E-value=0.44 Score=32.50 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|...++.+++|||||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999974
No 466
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.06 E-value=0.92 Score=42.03 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHhhHh-cCCCEEEEccCCCchhHHh
Q psy12758 73 TNNIALARYDKPTPVQKYAIPVII-SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 73 ~~~L~~~~~~~pt~iQ~~~ip~i~-~g~d~lv~a~TGsGKTla~ 115 (308)
+..|.+.|+. ++.+...+..+. .+++++++++||||||...
T Consensus 154 l~~l~~~g~~--~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 154 LDELVASGTF--PPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 3445566653 455666555544 5689999999999998743
No 467
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=88.04 E-value=1.1 Score=45.02 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
..+.+|.++||+|||..+.+-+.+.+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~ 206 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIR 206 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999988776666654
No 468
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=87.91 E-value=0.52 Score=40.29 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=16.5
Q ss_pred HHHhhHh-cCCCEEEEccCCCchhHHh
Q psy12758 90 YAIPVII-SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~-~g~d~lv~a~TGsGKTla~ 115 (308)
.|+.... .++++++.++.|+|||+..
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHH
Confidence 3443333 4589999999999999764
No 469
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.83 E-value=3.6 Score=38.86 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=31.6
Q ss_pred CCccCCC-CCHHHHHHHHHCCCCC--CcHHHHHHHhhHh---cCCCEEEEccCCCchhH
Q psy12758 61 PQFDDIQ-MTEIITNNIALARYDK--PTPVQKYAIPVII---SGRDVMACAQTGSGKTA 113 (308)
Q Consensus 61 ~~f~~l~-l~~~l~~~L~~~~~~~--pt~iQ~~~ip~i~---~g~d~lv~a~TGsGKTl 113 (308)
+.|++|. +.+ ..+..+++ |.++=..+|..+. .|+-.++.||.|+|||.
T Consensus 131 ~~f~~l~p~~p-----~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTT 184 (416)
T PRK09376 131 PLFENLTPLYP-----NERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTV 184 (416)
T ss_pred CCcccCCCCCh-----hhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhH
Confidence 5677774 333 23333443 4555566776654 67889999999999996
No 470
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=87.81 E-value=0.95 Score=48.76 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=45.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~ 168 (308)
.+++++|.|..|||||.+..--++..++..+ +.....+++++-|+.-+..+..++++-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~--------------~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG--------------PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC--------------CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 4679999999999999998888888887653 122357899999998888877777664
No 471
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.58 E-value=1.4 Score=37.80 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=17.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~ 121 (308)
|.-+++.+++|+|||...+--+.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 355889999999999865544443
No 472
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.52 E-value=3.1 Score=40.19 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|.-+++.+++|+|||...+-
T Consensus 94 GsvilI~G~pGsGKTTL~lq 113 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ 113 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46789999999999986544
No 473
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=87.42 E-value=0.36 Score=48.13 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=29.9
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
+++-+++|+||+-.-+|...+..+...+..+ ..++.+++.|.
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~----~~~~tvIiitH 528 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDEL----MKGRTTFIIAH 528 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH----hcCCEEEEEEe
Confidence 4566789999999999987777776666554 23455666553
No 474
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=87.40 E-value=0.53 Score=48.10 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=19.5
Q ss_pred CCCCceEEechhhhcccCCCHHHHHH
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRC 281 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~ 281 (308)
+++-+++|+||+-.-+|...+..+..
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH
Confidence 45667899999999898765555555
No 475
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.29 E-value=1.5 Score=45.83 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=30.2
Q ss_pred ceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 260 RFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 260 ~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
-+||||++|.+-+....+.+..++... +.+..+|+.|-+.|
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~----~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQ----PENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhC----CCCeEEEEEeCCCC
Confidence 479999999886555566788888775 55677877776643
No 476
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=87.26 E-value=2.8 Score=36.80 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=26.5
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.+-.+||+||.=.-+|..-.+.+...+..+... +...+++++|-
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtH 231 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTH 231 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEc
Confidence 455689999998888765444444444444222 33566666653
No 477
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.20 E-value=2.1 Score=40.79 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=51.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.|++++-+..++..++. .++.+..++|+....++...+ ....+|||||- .+. ..+++.+++
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~-~GiDip~v~ 315 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA-RGIDIDDVS 315 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCccCCCCC
Confidence 5689999999999999988876 468888999998876665443 34578999993 333 445677777
Q ss_pred eEE
Q psy12758 261 FLV 263 (308)
Q Consensus 261 ~lV 263 (308)
++|
T Consensus 316 ~VI 318 (434)
T PRK11192 316 HVI 318 (434)
T ss_pred EEE
Confidence 766
No 478
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.17 E-value=1.8 Score=42.49 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=52.3
Q ss_pred ccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCce
Q psy12758 186 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCRF 261 (308)
Q Consensus 186 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~ 261 (308)
++||.+.|+..+..++..+... ++++..+||+.......+.+ ....+|+|||- .. .+.+++.++.+
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----va-aRGiDi~~v~~ 344 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VA-ARGLDIPDVSH 344 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hh-hccCCccccce
Confidence 5999999999999988777665 48899999999987776655 35689999994 33 34456666666
Q ss_pred EE
Q psy12758 262 LV 263 (308)
Q Consensus 262 lV 263 (308)
+|
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 64
No 479
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.08 E-value=1.4 Score=46.09 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.+.++.++.|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 58999999999999865
No 480
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.03 E-value=2.5 Score=40.93 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=52.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||.|+|+..+..+++.++.. ++.+..++|+....+....+ ....+|||+|- .+. ..+++.+++
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~-~GID~p~V~ 296 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFG-MGINKPDVR 296 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhh-ccCCcccce
Confidence 45699999999999999888764 67888999998876654433 45689999994 222 345666777
Q ss_pred eEEec
Q psy12758 261 FLVLD 265 (308)
Q Consensus 261 ~lViD 265 (308)
++|.-
T Consensus 297 ~VI~~ 301 (470)
T TIGR00614 297 FVIHY 301 (470)
T ss_pred EEEEe
Confidence 77643
No 481
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=86.89 E-value=4.2 Score=42.26 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=55.6
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcC----CCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDR----GCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||.+|+++-+..+++.+++... .++.+..+||+.+..++.+.+.. ...|||+|. +....+++.+++
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn------IAErgItIp~V~ 282 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN------IAETSLTIEGIR 282 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc------hHhhcccccCce
Confidence 5689999999999988888876432 36888899999998888776632 358999996 445667788887
Q ss_pred eEE
Q psy12758 261 FLV 263 (308)
Q Consensus 261 ~lV 263 (308)
+||
T Consensus 283 ~VI 285 (819)
T TIGR01970 283 VVI 285 (819)
T ss_pred EEE
Confidence 665
No 482
>KOG2228|consensus
Probab=86.82 E-value=4.9 Score=37.04 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 244 RLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 244 ~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.|+..+..+...-+.--++|+||.|.+........+..++..-
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDis 165 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHH
Confidence 4455555544333333468999999888777777777777653
No 483
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=86.81 E-value=0.57 Score=45.99 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=30.2
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
+++-+++++||+-.-+|..-+..+...+..+ ..++-+++.|-
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~----~~~~t~i~itH 515 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRAL----AQGRTVLLVTH 515 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHh----cCCCEEEEEec
Confidence 4566889999999999988777777766665 23455555553
No 484
>PLN03232 ABC transporter C family member; Provisional
Probab=86.78 E-value=0.63 Score=51.59 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
++-++||+|||=.-+|..-+..+...+...
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 455789999999999887777777777664
No 485
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=86.64 E-value=4.7 Score=30.69 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=52.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh---h-cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD---L-DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++...+.++.+.++. .+..+..++|+......... + .....|+++|. . ....+++..++
T Consensus 29 ~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~-----~-~~~G~d~~~~~ 98 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-----V-IARGIDLPNVS 98 (131)
T ss_pred CcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-----h-hhcCcChhhCC
Confidence 5689999999999999888877 35677888888765433322 2 23468999995 2 23445667788
Q ss_pred eEEechhh
Q psy12758 261 FLVLDEAD 268 (308)
Q Consensus 261 ~lViDEad 268 (308)
++|+...+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88877664
No 486
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=86.45 E-value=1.2 Score=40.05 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=29.6
Q ss_pred EEEECcHHHHHHHHcCCcC-CCCCceEEechhhhcccCCCHHHHHHHHHh
Q psy12758 237 LLVATPGRLVDMLERGKIG-LANCRFLVLDEADRMLDMGFEPQIRCIVQE 285 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~~~-l~~~~~lViDEad~ll~~~f~~~l~~i~~~ 285 (308)
..++|.+.+.+...+.... .+..+++++||||+|.-.+| +.++.+...
T Consensus 143 ~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~al-e~lr~i~d~ 191 (297)
T COG2842 143 AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRAL-EELRRIHDK 191 (297)
T ss_pred HhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHH-HHHHHHHHh
Confidence 4445555555554332211 46778999999999976654 456666554
No 487
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=0.63 Score=44.53 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=20.1
Q ss_pred HHHHhhHh-cCCCEEEEccCCCchhHHh
Q psy12758 89 KYAIPVII-SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 89 ~~~ip~i~-~g~d~lv~a~TGsGKTla~ 115 (308)
+.++.... .|+|+++.+|+|||||+..
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 34444444 4599999999999999764
No 488
>PHA00012 I assembly protein
Probab=86.36 E-value=2.1 Score=39.30 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=18.6
Q ss_pred EEEEccCCCchhHHhHHHHHHHHH
Q psy12758 101 VMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 101 ~lv~a~TGsGKTla~llpil~~l~ 124 (308)
-++.+..|+|||+..+.-++..+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 478999999999988775555443
No 489
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.26 E-value=1.1 Score=39.72 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+.+++.+++|||||.-.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred CCcEEEEEcCCCCcHHHHH
Confidence 4688999999999999743
No 490
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=86.20 E-value=7.6 Score=39.00 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=53.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||.|+|+.-+.+++..++.. ++.+..+++|.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~-~~GIDip~V~ 306 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AF-GMGINKPNVR 306 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hh-hccCCCCCcC
Confidence 56899999999999999888764 57888899998776554433 34679999995 33 3557788999
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 307 ~VI~ 310 (607)
T PRK11057 307 FVVH 310 (607)
T ss_pred EEEE
Confidence 8884
No 491
>KOG2227|consensus
Probab=86.11 E-value=1.7 Score=41.53 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
..+.|++.+|+|||.+.
T Consensus 176 gSlYVsG~PGtgkt~~l 192 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALL 192 (529)
T ss_pred cceEeeCCCCcchHHHH
Confidence 68999999999999864
No 492
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.00 E-value=4.8 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=17.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~ 121 (308)
|.-+++.+++|+|||...+--+..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999998754433333
No 493
>PRK13767 ATP-dependent helicase; Provisional
Probab=85.80 E-value=4.7 Score=42.35 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=53.7
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhc--CCCceEEEecCCchhHhHHh---h-cCCCeEEEECcHHHHHHHHcCCcCCCC
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYR--SQLRPCVVYGGSNVGDQMRD---L-DRGCHLLVATPGRLVDMLERGKIGLAN 258 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~ 258 (308)
..+||.|+|+..|+.++..++..... .+..+...+|+.+...+... + ....+|+|||. .+. ..+++.+
T Consensus 285 ~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----~Le-~GIDip~ 358 (876)
T PRK13767 285 RTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----SLE-LGIDIGY 358 (876)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hHH-hcCCCCC
Confidence 56899999999999999988875432 34567888999877655432 2 34578999995 233 3466788
Q ss_pred CceEEec
Q psy12758 259 CRFLVLD 265 (308)
Q Consensus 259 ~~~lViD 265 (308)
++++|.-
T Consensus 359 Vd~VI~~ 365 (876)
T PRK13767 359 IDLVVLL 365 (876)
T ss_pred CcEEEEe
Confidence 8888753
No 494
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=85.68 E-value=3.6 Score=42.55 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=21.2
Q ss_pred CcHHHHHHHHcCCcCCCCCceEEechhhhcccC
Q psy12758 241 TPGRLVDMLERGKIGLANCRFLVLDEADRMLDM 273 (308)
Q Consensus 241 TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~ 273 (308)
.||++...+..... .-.++++||+|.+...
T Consensus 402 ~~G~~~~~l~~~~~---~~~villDEidk~~~~ 431 (784)
T PRK10787 402 MPGKLIQKMAKVGV---KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCcHHHHHHHhcCC---CCCEEEEEChhhcccc
Confidence 68888777765332 2247999999998764
No 495
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=85.61 E-value=5.8 Score=41.27 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=55.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcC----CCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDR----GCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||.+|+++-+.++++.++.... .++.+..+||+.+..++.+.+.. ...|||+|. +....+++.+++
T Consensus 213 g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAErsLtIp~V~ 285 (812)
T PRK11664 213 GSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAETSLTIEGIR 285 (812)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHHhcccccCce
Confidence 5689999999999999998886321 35778889999998877776642 368999996 445667788888
Q ss_pred eEE
Q psy12758 261 FLV 263 (308)
Q Consensus 261 ~lV 263 (308)
+||
T Consensus 286 ~VI 288 (812)
T PRK11664 286 LVV 288 (812)
T ss_pred EEE
Confidence 766
No 496
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=85.60 E-value=0.62 Score=46.23 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=32.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHhh---HhcCCCEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 69 TEIITNNIALARYDKPTPVQKYAIPV---IISGRDVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 69 ~~~l~~~L~~~~~~~pt~iQ~~~ip~---i~~g~d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
+.++.+.+++.+-. +++.-.-+|. -...+++++.|+||||||.+ +--++..+...
T Consensus 146 ~~~l~~~l~~~~~~--~~~~igg~pl~~~~~e~~h~li~G~tGsGKs~~-i~~ll~~~~~~ 203 (566)
T TIGR02759 146 PKELIKKLKKSRRA--SDIKIGGLPLIKFGSETQHILIHGTTGSGKSVA-IRKLLRWIRQR 203 (566)
T ss_pred HHHHHHHHHhcCCC--CceeeCCccCCCCcccccceEEEcCCCCCHHHH-HHHHHHHHHhc
Confidence 34555666555421 2232223343 33457999999999999964 45566666544
No 497
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=85.60 E-value=0.51 Score=46.94 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=25.0
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+++-+++|+||+-.-+|..-+..+...+..+
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4566789999999999987777777777665
No 498
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.56 E-value=1.2 Score=40.73 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=18.3
Q ss_pred hHhcCCCEEEEccCCCchhHHh
Q psy12758 94 VIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 94 ~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+..|.+++++++||||||...
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHH
Confidence 3557789999999999999743
No 499
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=85.53 E-value=1.8 Score=38.81 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+.+-+++++||.-.-+|......+..++..+. .++.+|+.|
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~is 194 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSE 194 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEE
Confidence 45667899999999999887777777777642 244555544
No 500
>PTZ00243 ABC transporter; Provisional
Probab=85.19 E-value=0.63 Score=51.72 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.5
Q ss_pred CceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 259 CRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 259 ~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
-++||+|||-.-+|......+...+...
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 5789999999999988888888887764
Done!