Query psy12758
Match_columns 308
No_of_seqs 254 out of 1727
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:53:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 9.8E-42 3.3E-46 299.1 20.6 193 61-307 29-221 (242)
2 2db3_A ATP-dependent RNA helic 100.0 1.3E-40 4.5E-45 315.8 22.1 195 61-307 56-250 (434)
3 3iuy_A Probable ATP-dependent 100.0 1.5E-40 5E-45 288.7 18.7 193 61-307 19-212 (228)
4 1vec_A ATP-dependent RNA helic 100.0 2E-39 6.9E-44 276.8 20.4 188 61-307 3-191 (206)
5 3fmo_B ATP-dependent RNA helic 100.0 4.4E-40 1.5E-44 297.7 16.3 185 61-307 92-281 (300)
6 3ber_A Probable ATP-dependent 100.0 2.8E-39 9.7E-44 284.9 21.1 188 61-307 43-231 (249)
7 1q0u_A Bstdead; DEAD protein, 100.0 1.1E-39 3.6E-44 281.7 18.0 188 61-307 4-195 (219)
8 1wrb_A DJVLGB; RNA helicase, D 100.0 5.3E-40 1.8E-44 289.7 16.4 201 61-307 23-223 (253)
9 2oxc_A Probable ATP-dependent 100.0 2.3E-39 7.9E-44 281.8 19.8 189 59-307 22-212 (230)
10 3ly5_A ATP-dependent RNA helic 100.0 3E-39 1E-43 286.8 18.8 192 61-307 52-246 (262)
11 3bor_A Human initiation factor 100.0 2.8E-39 9.6E-44 282.6 17.2 188 61-307 30-218 (237)
12 2pl3_A Probable ATP-dependent 100.0 2.3E-38 8E-43 276.2 21.3 191 61-307 25-216 (236)
13 2gxq_A Heat resistant RNA depe 100.0 1.8E-38 6.1E-43 271.0 18.6 188 62-307 2-189 (207)
14 1qde_A EIF4A, translation init 100.0 2.8E-38 9.5E-43 273.3 19.1 187 61-307 14-200 (224)
15 1t6n_A Probable ATP-dependent 100.0 1.1E-37 3.7E-42 269.0 19.3 188 61-307 14-204 (220)
16 3dkp_A Probable ATP-dependent 100.0 5.8E-38 2E-42 275.2 15.2 190 61-307 25-224 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 7E-37 2.4E-41 287.2 22.0 209 61-306 15-223 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 6.1E-36 2.1E-40 280.5 20.9 188 60-306 36-223 (410)
19 1s2m_A Putative ATP-dependent 100.0 3.1E-34 1E-38 268.0 18.5 188 60-306 20-207 (400)
20 3eiq_A Eukaryotic initiation f 100.0 7E-34 2.4E-38 266.3 20.2 187 61-306 40-227 (414)
21 3sqw_A ATP-dependent RNA helic 100.0 3.9E-34 1.3E-38 280.5 15.1 197 60-307 16-227 (579)
22 1fuu_A Yeast initiation factor 100.0 1.6E-33 5.6E-38 262.0 18.0 186 61-306 21-206 (394)
23 1xti_A Probable ATP-dependent 100.0 1.9E-33 6.6E-38 261.4 17.8 188 61-307 8-198 (391)
24 1hv8_A Putative ATP-dependent 100.0 7.1E-33 2.4E-37 254.8 18.9 185 61-306 6-191 (367)
25 3i5x_A ATP-dependent RNA helic 100.0 1.8E-33 6E-38 274.7 15.6 196 61-307 68-278 (563)
26 3pey_A ATP-dependent RNA helic 100.0 1.2E-32 4E-37 255.8 19.3 184 60-306 4-190 (395)
27 3fmp_B ATP-dependent RNA helic 100.0 7.4E-33 2.5E-37 265.3 15.5 185 61-307 92-281 (479)
28 3fht_A ATP-dependent RNA helic 100.0 3.2E-32 1.1E-36 254.7 19.2 184 61-306 25-213 (412)
29 2z0m_A 337AA long hypothetical 100.0 1.5E-31 5E-36 243.5 19.3 173 68-306 1-173 (337)
30 3oiy_A Reverse gyrase helicase 100.0 5.5E-30 1.9E-34 240.8 13.3 175 71-307 9-208 (414)
31 2zj8_A DNA helicase, putative 100.0 2.2E-29 7.6E-34 252.7 17.3 179 62-305 2-181 (720)
32 2va8_A SSO2462, SKI2-type heli 100.0 5.8E-29 2E-33 249.4 17.8 180 60-305 7-187 (715)
33 3fho_A ATP-dependent RNA helic 100.0 3.1E-29 1.1E-33 242.2 11.5 182 62-306 120-304 (508)
34 2p6r_A Afuhel308 helicase; pro 100.0 2.3E-29 7.9E-34 251.9 10.0 181 62-305 2-184 (702)
35 3l9o_A ATP-dependent RNA helic 100.0 5.1E-29 1.7E-33 258.8 11.1 175 59-306 160-334 (1108)
36 4ddu_A Reverse gyrase; topoiso 100.0 3.4E-28 1.2E-32 252.6 16.2 168 78-307 74-265 (1104)
37 4a2p_A RIG-I, retinoic acid in 100.0 6.8E-28 2.3E-32 233.8 16.7 173 79-305 3-178 (556)
38 3tbk_A RIG-I helicase domain; 100.0 1.6E-27 5.3E-32 230.9 18.3 171 82-305 3-176 (555)
39 1tf5_A Preprotein translocase 100.0 2.7E-28 9.4E-33 242.0 12.1 164 78-304 79-287 (844)
40 2v1x_A ATP-dependent DNA helic 99.9 3.2E-28 1.1E-32 238.6 11.6 176 62-307 22-214 (591)
41 2ykg_A Probable ATP-dependent 99.9 4.3E-27 1.5E-31 234.9 17.8 180 72-304 2-184 (696)
42 3b6e_A Interferon-induced heli 99.9 3E-27 1E-31 202.1 11.6 174 76-302 26-216 (216)
43 1oyw_A RECQ helicase, ATP-depe 99.9 6.8E-28 2.3E-32 233.4 8.3 175 62-306 3-187 (523)
44 4a2q_A RIG-I, retinoic acid in 99.9 1.3E-26 4.5E-31 235.0 17.8 174 78-304 243-418 (797)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 5.1E-27 1.8E-31 243.4 13.6 166 74-306 48-228 (1054)
46 2fsf_A Preprotein translocase 99.9 5.7E-27 2E-31 232.1 12.6 146 79-287 71-239 (853)
47 1nkt_A Preprotein translocase 99.9 1E-26 3.5E-31 230.8 13.1 165 78-305 107-316 (922)
48 2xgj_A ATP-dependent RNA helic 99.9 1.5E-25 5.2E-30 231.0 16.4 156 77-306 81-236 (1010)
49 4a2w_A RIG-I, retinoic acid in 99.9 8.9E-26 3E-30 232.0 14.6 176 76-304 241-418 (936)
50 4f92_B U5 small nuclear ribonu 99.9 1.5E-25 5.2E-30 240.5 15.0 178 68-305 911-1095(1724)
51 3llm_A ATP-dependent RNA helic 99.9 3.1E-25 1.1E-29 193.3 12.9 172 69-306 47-221 (235)
52 4a4z_A Antiviral helicase SKI2 99.9 2.3E-25 7.8E-30 229.5 12.9 155 79-305 36-190 (997)
53 4f92_B U5 small nuclear ribonu 99.9 1.1E-24 3.7E-29 233.9 16.7 176 79-305 75-256 (1724)
54 1rif_A DAR protein, DNA helica 99.9 5.3E-24 1.8E-28 190.3 12.5 155 82-307 112-266 (282)
55 4gl2_A Interferon-induced heli 99.9 1.9E-24 6.6E-29 215.8 10.1 171 82-305 6-193 (699)
56 1wp9_A ATP-dependent RNA helic 99.9 6.1E-23 2.1E-27 194.3 18.5 160 83-305 9-168 (494)
57 1gm5_A RECG; helicase, replica 99.9 1.8E-23 6.1E-28 209.8 15.3 163 70-305 356-528 (780)
58 2jlq_A Serine protease subunit 99.9 1.4E-23 4.7E-28 199.8 8.7 154 80-307 1-155 (451)
59 2oca_A DAR protein, ATP-depend 99.9 5.2E-23 1.8E-27 198.3 11.9 156 81-307 111-266 (510)
60 2ipc_A Preprotein translocase 99.9 1.2E-22 3.9E-27 201.5 14.3 130 79-271 76-215 (997)
61 2whx_A Serine protease/ntpase/ 99.9 6.3E-24 2.2E-28 208.9 4.7 172 62-307 150-322 (618)
62 2eyq_A TRCF, transcription-rep 99.9 5.8E-21 2E-25 199.5 18.7 167 66-305 586-763 (1151)
63 3o8b_A HCV NS3 protease/helica 99.9 1.9E-22 6.6E-27 198.0 6.8 145 84-307 218-364 (666)
64 2fwr_A DNA repair protein RAD2 99.8 2.4E-20 8.3E-25 177.9 16.0 137 83-305 93-230 (472)
65 2wv9_A Flavivirin protease NS2 99.8 1.8E-23 6.2E-28 207.2 -6.7 161 75-308 202-378 (673)
66 2fz4_A DNA repair protein RAD2 99.8 4.9E-20 1.7E-24 160.7 15.0 138 83-306 93-231 (237)
67 1yks_A Genome polyprotein [con 99.8 2.7E-21 9.1E-26 183.4 1.2 133 94-307 4-144 (440)
68 2z83_A Helicase/nucleoside tri 99.8 4.8E-20 1.6E-24 175.7 8.0 139 92-308 15-158 (459)
69 2v6i_A RNA helicase; membrane, 99.8 2.7E-19 9.2E-24 169.2 10.7 138 97-307 1-138 (431)
70 3crv_A XPD/RAD3 related DNA he 99.8 4.2E-19 1.4E-23 172.9 11.8 148 83-272 3-187 (551)
71 2xau_A PRE-mRNA-splicing facto 99.8 2.8E-19 9.6E-24 180.0 10.3 178 61-305 72-252 (773)
72 3h1t_A Type I site-specific re 99.8 2.9E-19 9.8E-24 175.3 7.4 157 82-305 177-343 (590)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.3E-18 4.6E-23 178.9 11.9 154 82-305 270-440 (1038)
74 2vl7_A XPD; helicase, unknown 99.7 1.1E-17 3.7E-22 162.5 7.2 162 79-272 4-189 (540)
75 3rc3_A ATP-dependent RNA helic 99.7 3.7E-17 1.3E-21 161.8 10.5 135 91-304 148-282 (677)
76 1z63_A Helicase of the SNF2/RA 99.6 1.8E-15 6.1E-20 145.2 10.7 149 82-304 36-188 (500)
77 4a15_A XPD helicase, ATP-depen 99.6 3.5E-15 1.2E-19 146.9 9.9 72 83-172 3-78 (620)
78 3dmq_A RNA polymerase-associat 99.5 2.2E-14 7.5E-19 147.9 9.0 159 82-303 152-316 (968)
79 1z3i_X Similar to RAD54-like; 99.4 2.3E-12 7.7E-17 127.6 16.8 159 83-303 55-230 (644)
80 3mwy_W Chromo domain-containin 99.4 1.3E-12 4.6E-17 132.3 11.6 154 83-303 236-405 (800)
81 3jux_A Protein translocase sub 99.3 1.2E-11 4.1E-16 121.2 13.0 132 79-271 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.2 1.8E-11 6.2E-16 120.2 9.6 144 85-300 151-296 (608)
83 1c4o_A DNA nucleotide excision 98.5 2E-07 6.8E-12 92.4 9.3 69 79-170 5-78 (664)
84 3upu_A ATP-dependent DNA helic 98.3 4.5E-06 1.5E-10 79.0 10.9 49 77-126 19-72 (459)
85 3e1s_A Exodeoxyribonuclease V, 98.2 6.7E-06 2.3E-10 80.0 12.0 40 83-123 189-228 (574)
86 2d7d_A Uvrabc system protein B 98.2 2.9E-06 1E-10 83.9 7.7 66 83-170 12-82 (661)
87 2gk6_A Regulator of nonsense t 98.1 1.1E-05 3.9E-10 79.2 10.9 69 82-168 179-247 (624)
88 2xzl_A ATP-dependent helicase 98.1 2.5E-05 8.4E-10 78.9 13.4 69 82-168 359-427 (802)
89 4b3f_X DNA-binding protein smu 98.0 8.2E-06 2.8E-10 80.6 8.0 67 83-168 189-256 (646)
90 2wjy_A Regulator of nonsense t 97.9 4.3E-05 1.5E-09 77.0 10.6 68 83-168 356-423 (800)
91 2o0j_A Terminase, DNA packagin 97.6 0.00051 1.7E-08 63.3 12.3 42 83-124 163-204 (385)
92 3ec2_A DNA replication protein 97.4 0.0011 3.8E-08 53.9 9.9 19 97-115 37-55 (180)
93 3cpe_A Terminase, DNA packagin 97.3 0.0044 1.5E-07 60.4 14.3 42 83-124 163-204 (592)
94 3h4m_A Proteasome-activating n 96.7 0.0016 5.6E-08 56.8 5.1 52 61-115 14-68 (285)
95 2kjq_A DNAA-related protein; s 96.6 0.0037 1.3E-07 49.5 6.4 19 97-115 35-53 (149)
96 3lfu_A DNA helicase II; SF1 he 96.5 0.0059 2E-07 59.8 8.2 71 82-169 8-78 (647)
97 3vkw_A Replicase large subunit 96.5 0.006 2.1E-07 57.0 7.7 72 187-286 187-258 (446)
98 3te6_A Regulatory protein SIR3 96.4 0.021 7E-07 51.1 10.6 42 258-303 132-173 (318)
99 1d2n_A N-ethylmaleimide-sensit 96.4 0.023 7.9E-07 49.2 10.7 46 258-303 124-175 (272)
100 1a5t_A Delta prime, HOLB; zinc 96.3 0.031 1.1E-06 50.1 11.5 32 85-116 4-42 (334)
101 3u61_B DNA polymerase accessor 96.2 0.012 4.1E-07 52.3 8.1 42 59-115 21-65 (324)
102 1l8q_A Chromosomal replication 96.2 0.018 6.1E-07 51.3 9.1 18 98-115 37-54 (324)
103 2chg_A Replication factor C sm 96.2 0.079 2.7E-06 43.3 12.5 41 60-115 13-55 (226)
104 3pfi_A Holliday junction ATP-d 96.2 0.056 1.9E-06 48.2 12.3 44 60-115 25-72 (338)
105 3eie_A Vacuolar protein sortin 96.0 0.0085 2.9E-07 53.5 5.9 49 61-115 15-68 (322)
106 3bos_A Putative DNA replicatio 96.0 0.0087 3E-07 50.2 5.6 19 97-115 51-69 (242)
107 1uaa_A REP helicase, protein ( 96.0 0.012 4E-07 58.2 7.2 69 83-168 2-70 (673)
108 1sxj_E Activator 1 40 kDa subu 96.0 0.038 1.3E-06 49.5 10.1 44 60-115 10-53 (354)
109 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.021 7.1E-07 48.8 7.9 52 61-115 3-56 (262)
110 2z4s_A Chromosomal replication 95.9 0.038 1.3E-06 51.7 10.1 18 98-115 130-147 (440)
111 1pjr_A PCRA; DNA repair, DNA r 95.9 0.018 6.3E-07 57.3 8.2 71 82-169 10-80 (724)
112 3u4q_A ATP-dependent helicase/ 95.8 0.014 4.8E-07 61.6 7.3 71 83-168 10-80 (1232)
113 2v1u_A Cell division control p 95.8 0.03 1E-06 50.5 8.6 19 97-115 43-61 (387)
114 2zpa_A Uncharacterized protein 95.7 0.023 7.9E-07 55.7 7.9 37 83-119 175-213 (671)
115 2orw_A Thymidine kinase; TMTK, 95.7 0.015 5.2E-07 47.6 5.8 20 98-117 3-22 (184)
116 1sxj_A Activator 1 95 kDa subu 95.7 0.03 1E-06 53.4 8.7 52 59-116 34-95 (516)
117 2b8t_A Thymidine kinase; deoxy 95.7 0.12 4E-06 43.7 11.3 32 238-270 70-101 (223)
118 1xx6_A Thymidine kinase; NESG, 95.4 0.036 1.2E-06 45.7 7.1 21 98-118 8-28 (191)
119 3syl_A Protein CBBX; photosynt 95.4 0.033 1.1E-06 48.9 7.0 17 99-115 68-84 (309)
120 2zan_A Vacuolar protein sortin 95.3 0.042 1.4E-06 51.4 8.1 53 60-115 130-184 (444)
121 1iqp_A RFCS; clamp loader, ext 95.3 0.097 3.3E-06 46.0 10.1 42 59-115 20-63 (327)
122 1w4r_A Thymidine kinase; type 95.3 0.05 1.7E-06 45.0 7.4 19 98-116 20-38 (195)
123 2p6n_A ATP-dependent RNA helic 95.3 0.1 3.6E-06 42.7 9.4 71 185-265 55-129 (191)
124 3e2i_A Thymidine kinase; Zn-bi 95.1 0.022 7.4E-07 48.0 4.8 26 257-283 100-125 (219)
125 2j9r_A Thymidine kinase; TK1, 95.1 0.048 1.6E-06 45.8 6.9 23 98-120 28-50 (214)
126 2hjv_A ATP-dependent RNA helic 94.8 0.32 1.1E-05 38.4 10.9 72 185-266 36-111 (163)
127 2qgz_A Helicase loader, putati 94.8 0.068 2.3E-06 47.4 7.4 18 98-115 152-169 (308)
128 1jr3_A DNA polymerase III subu 94.8 0.43 1.5E-05 42.7 12.9 41 60-115 12-55 (373)
129 2qby_B CDC6 homolog 3, cell di 94.6 0.077 2.6E-06 47.9 7.4 18 98-115 45-62 (384)
130 2orv_A Thymidine kinase; TP4A 94.5 0.13 4.4E-06 43.7 8.0 24 97-120 18-41 (234)
131 1fnn_A CDC6P, cell division co 94.4 0.15 5.2E-06 45.9 9.0 16 100-115 46-61 (389)
132 2qby_A CDC6 homolog 1, cell di 94.2 0.049 1.7E-06 49.0 5.3 18 98-115 45-62 (386)
133 3eaq_A Heat resistant RNA depe 93.3 0.31 1.1E-05 40.4 8.2 70 185-264 32-105 (212)
134 1fuk_A Eukaryotic initiation f 93.1 0.35 1.2E-05 38.2 7.9 71 185-265 31-105 (165)
135 1t5i_A C_terminal domain of A 93.0 0.51 1.7E-05 37.7 8.8 71 185-265 32-106 (172)
136 2d7d_A Uvrabc system protein B 93.0 0.89 3.1E-05 44.6 12.1 93 185-287 446-542 (661)
137 3kl4_A SRP54, signal recogniti 92.8 0.33 1.1E-05 45.1 8.4 18 99-116 98-115 (433)
138 2rb4_A ATP-dependent RNA helic 92.6 0.29 9.8E-06 39.1 6.8 70 185-264 35-108 (175)
139 2jgn_A DBX, DDX3, ATP-dependen 92.5 0.38 1.3E-05 39.0 7.5 70 185-264 47-120 (185)
140 2dr3_A UPF0273 protein PH0284; 92.1 0.41 1.4E-05 40.0 7.5 23 97-119 22-44 (247)
141 3co5_A Putative two-component 92.1 0.12 4E-06 40.1 3.7 21 95-115 24-44 (143)
142 2w0m_A SSO2452; RECA, SSPF, un 92.0 0.3 1E-05 40.4 6.4 22 96-117 21-42 (235)
143 2r6a_A DNAB helicase, replicat 91.9 0.34 1.2E-05 45.2 7.3 25 97-121 202-226 (454)
144 3n70_A Transport activator; si 91.7 0.15 5E-06 39.6 3.9 21 95-115 21-41 (145)
145 2db3_A ATP-dependent RNA helic 91.5 0.93 3.2E-05 41.8 9.9 70 185-264 301-374 (434)
146 3i32_A Heat resistant RNA depe 91.4 0.99 3.4E-05 39.7 9.4 70 185-264 29-102 (300)
147 2ehv_A Hypothetical protein PH 91.2 0.16 5.5E-06 42.7 3.9 25 95-119 27-51 (251)
148 3fht_A ATP-dependent RNA helic 91.1 1.3 4.6E-05 39.8 10.3 70 185-264 267-340 (412)
149 3m6a_A ATP-dependent protease 90.9 0.44 1.5E-05 45.7 7.0 19 97-115 107-125 (543)
150 3pey_A ATP-dependent RNA helic 90.4 2.1 7.2E-05 38.1 10.9 75 185-269 244-322 (395)
151 1c4o_A DNA nucleotide excision 90.4 2.1 7.2E-05 42.0 11.5 76 185-270 440-519 (664)
152 4b4t_M 26S protease regulatory 90.2 0.13 4.5E-06 47.9 2.6 52 61-115 178-232 (434)
153 3i5x_A ATP-dependent RNA helic 89.4 3.5 0.00012 39.1 12.1 75 185-266 340-418 (563)
154 1xti_A Probable ATP-dependent 89.0 2.5 8.4E-05 37.7 10.2 73 185-267 251-327 (391)
155 2i4i_A ATP-dependent RNA helic 88.8 1.2 4E-05 40.4 7.9 70 185-264 277-350 (417)
156 4b4t_J 26S protease regulatory 88.7 0.2 7E-06 46.1 2.6 52 61-115 145-199 (405)
157 1xwi_A SKD1 protein; VPS4B, AA 88.7 0.5 1.7E-05 41.9 5.2 49 61-115 9-62 (322)
158 1hv8_A Putative ATP-dependent 88.6 2.4 8.4E-05 37.2 9.8 71 185-265 239-313 (367)
159 3cf0_A Transitional endoplasmi 88.6 0.18 6E-06 44.4 2.1 54 61-115 12-66 (301)
160 3b9p_A CG5977-PA, isoform A; A 88.4 0.15 5E-06 44.5 1.5 53 60-115 17-71 (297)
161 1e9r_A Conjugal transfer prote 88.3 0.3 1E-05 45.1 3.6 46 96-160 51-96 (437)
162 1jbk_A CLPB protein; beta barr 87.9 0.47 1.6E-05 37.5 4.1 18 98-115 43-60 (195)
163 3sqw_A ATP-dependent RNA helic 87.9 5.1 0.00017 38.3 12.1 75 185-266 289-367 (579)
164 2q6t_A DNAB replication FORK h 87.8 2 7E-05 39.8 9.0 25 97-121 199-223 (444)
165 1lv7_A FTSH; alpha/beta domain 87.6 0.53 1.8E-05 39.9 4.5 53 60-115 8-62 (257)
166 1hqc_A RUVB; extended AAA-ATPa 87.3 0.76 2.6E-05 40.2 5.4 48 60-115 8-55 (324)
167 1yks_A Genome polyprotein [con 87.2 3.2 0.00011 38.4 10.0 67 185-263 178-245 (440)
168 4b4t_H 26S protease regulatory 87.2 0.25 8.6E-06 46.3 2.3 52 61-115 206-260 (467)
169 1oyw_A RECQ helicase, ATP-depe 87.1 1.6 5.5E-05 41.4 8.0 70 185-264 237-310 (523)
170 1u0j_A DNA replication protein 87.1 1.2 4.3E-05 38.4 6.5 43 71-116 74-122 (267)
171 2yjt_D ATP-dependent RNA helic 86.9 0.12 4.1E-06 41.2 0.0 70 185-264 31-104 (170)
172 3nbx_X ATPase RAVA; AAA+ ATPas 86.8 0.83 2.9E-05 43.3 5.7 43 72-115 16-58 (500)
173 3hjh_A Transcription-repair-co 86.7 2.5 8.5E-05 39.8 8.9 51 97-169 13-63 (483)
174 3hws_A ATP-dependent CLP prote 86.7 0.9 3.1E-05 40.8 5.7 19 97-115 50-68 (363)
175 2oap_1 GSPE-2, type II secreti 86.5 0.66 2.3E-05 44.1 4.8 39 74-114 237-276 (511)
176 1g5t_A COB(I)alamin adenosyltr 86.4 8.7 0.0003 31.4 11.0 25 99-123 29-53 (196)
177 2j0s_A ATP-dependent RNA helic 86.1 1.8 6.1E-05 39.1 7.5 70 185-264 277-350 (410)
178 3dm5_A SRP54, signal recogniti 86.1 4.9 0.00017 37.3 10.4 18 99-116 101-118 (443)
179 3jvv_A Twitching mobility prot 85.8 0.9 3.1E-05 41.1 5.2 39 59-115 102-140 (356)
180 2p65_A Hypothetical protein PF 85.7 0.56 1.9E-05 37.0 3.4 18 98-115 43-60 (187)
181 2v1x_A ATP-dependent DNA helic 85.7 1.7 5.8E-05 42.0 7.3 71 184-264 267-341 (591)
182 2l8b_A Protein TRAI, DNA helic 85.5 0.69 2.4E-05 37.7 3.8 42 84-125 35-78 (189)
183 1s2m_A Putative ATP-dependent 85.5 1.9 6.4E-05 38.8 7.2 70 185-264 259-332 (400)
184 1xp8_A RECA protein, recombina 85.2 1.1 3.7E-05 40.7 5.4 21 97-117 73-93 (366)
185 2bjv_A PSP operon transcriptio 84.6 0.74 2.5E-05 39.2 3.9 20 96-115 27-46 (265)
186 2qp9_X Vacuolar protein sortin 84.5 0.19 6.5E-06 45.4 0.0 51 60-116 47-102 (355)
187 2jlq_A Serine protease subunit 84.5 6.4 0.00022 36.4 10.6 67 185-263 189-256 (451)
188 2eyq_A TRCF, transcription-rep 84.5 1.2 4E-05 46.7 6.0 91 185-287 813-907 (1151)
189 1p9r_A General secretion pathw 84.3 0.9 3.1E-05 42.0 4.5 41 60-114 143-183 (418)
190 3vfd_A Spastin; ATPase, microt 84.3 0.28 9.6E-06 44.7 1.1 54 60-115 111-165 (389)
191 3uk6_A RUVB-like 2; hexameric 84.2 0.77 2.6E-05 41.0 4.0 47 62-116 42-88 (368)
192 2w58_A DNAI, primosome compone 84.1 0.8 2.7E-05 37.1 3.7 17 99-115 55-71 (202)
193 1njg_A DNA polymerase III subu 84.0 1.3 4.5E-05 36.1 5.1 41 60-115 19-62 (250)
194 3d8b_A Fidgetin-like protein 1 83.8 1.4 4.6E-05 39.7 5.4 54 60-116 80-135 (357)
195 1sxj_D Activator 1 41 kDa subu 83.8 0.6 2.1E-05 41.3 3.0 42 59-115 32-75 (353)
196 1ofh_A ATP-dependent HSL prote 83.8 2.2 7.5E-05 36.8 6.7 18 98-115 50-67 (310)
197 1wp9_A ATP-dependent RNA helic 83.5 5.1 0.00018 36.3 9.4 74 185-268 362-447 (494)
198 2r44_A Uncharacterized protein 83.5 0.85 2.9E-05 40.3 3.9 27 89-115 37-63 (331)
199 3cmu_A Protein RECA, recombina 83.4 0.79 2.7E-05 50.4 4.2 24 98-121 1427-1450(2050)
200 3b85_A Phosphate starvation-in 83.3 1.4 4.7E-05 36.5 4.9 33 83-115 7-39 (208)
201 4a1f_A DNAB helicase, replicat 83.3 1.6 5.6E-05 39.0 5.7 25 97-121 45-69 (338)
202 2x8a_A Nuclear valosin-contain 83.2 0.26 8.8E-06 42.8 0.3 52 61-115 7-61 (274)
203 4b4t_L 26S protease subunit RP 82.3 0.44 1.5E-05 44.4 1.5 52 61-115 178-232 (437)
204 1ixz_A ATP-dependent metallopr 82.3 0.42 1.4E-05 40.5 1.3 50 61-115 13-66 (254)
205 3dkp_A Probable ATP-dependent 81.9 0.84 2.9E-05 38.3 3.1 25 147-171 100-124 (245)
206 2r2a_A Uncharacterized protein 81.9 0.5 1.7E-05 39.0 1.6 43 259-302 88-132 (199)
207 2wv9_A Flavivirin protease NS2 81.9 2.9 9.8E-05 41.1 7.3 68 184-263 410-478 (673)
208 2xau_A PRE-mRNA-splicing facto 81.8 3 0.0001 41.7 7.5 74 184-263 303-392 (773)
209 1g8p_A Magnesium-chelatase 38 81.8 0.67 2.3E-05 41.0 2.5 18 98-115 45-62 (350)
210 2chq_A Replication factor C sm 81.6 2 6.7E-05 37.2 5.5 44 59-115 12-55 (319)
211 2v6i_A RNA helicase; membrane, 81.6 3 0.0001 38.4 7.0 66 185-262 172-238 (431)
212 1iy2_A ATP-dependent metallopr 81.1 0.5 1.7E-05 40.8 1.4 51 60-115 36-90 (278)
213 4b4t_K 26S protease regulatory 81.0 0.49 1.7E-05 44.0 1.3 52 61-115 169-223 (428)
214 1kgd_A CASK, peripheral plasma 80.9 0.73 2.5E-05 36.9 2.2 19 97-115 4-22 (180)
215 3tbk_A RIG-I helicase domain; 80.8 4.9 0.00017 37.6 8.3 74 185-264 390-476 (555)
216 4b4t_I 26S protease regulatory 80.8 0.83 2.9E-05 42.4 2.8 52 61-115 179-233 (437)
217 2gza_A Type IV secretion syste 80.7 1.1 3.7E-05 40.5 3.5 21 94-114 171-191 (361)
218 3nwn_A Kinesin-like protein KI 80.6 1.1 3.8E-05 40.5 3.5 25 91-115 96-122 (359)
219 1ojl_A Transcriptional regulat 80.4 1.2 4E-05 39.2 3.5 19 97-115 24-42 (304)
220 1bg2_A Kinesin; motor protein, 80.3 1.3 4.3E-05 39.6 3.7 25 91-115 69-95 (325)
221 1sxj_C Activator 1 40 kDa subu 80.3 2.4 8.1E-05 37.5 5.6 43 59-116 20-64 (340)
222 2gno_A DNA polymerase III, gam 80.3 6.5 0.00022 34.4 8.4 44 256-305 80-123 (305)
223 3dc4_A Kinesin-like protein NO 80.2 1.2 4E-05 40.1 3.5 25 91-115 86-112 (344)
224 1f9v_A Kinesin-like protein KA 80.2 1.3 4.5E-05 39.9 3.8 27 90-116 75-103 (347)
225 1w36_B RECB, exodeoxyribonucle 79.8 2.9 9.9E-05 43.9 6.8 65 97-169 16-80 (1180)
226 4f4c_A Multidrug resistance pr 79.8 0.19 6.6E-06 53.4 -2.1 40 257-300 1234-1273(1321)
227 4etp_A Kinesin-like protein KA 79.6 1.4 4.8E-05 40.5 3.9 26 91-116 132-159 (403)
228 3t0q_A AGR253WP; kinesin, alph 79.5 1.3 4.3E-05 40.0 3.5 26 90-115 76-103 (349)
229 3cmu_A Protein RECA, recombina 79.4 4.1 0.00014 45.0 7.9 27 97-123 1080-1106(2050)
230 3iij_A Coilin-interacting nucl 79.3 0.87 3E-05 36.2 2.2 21 96-116 9-29 (180)
231 2pt7_A CAG-ALFA; ATPase, prote 79.1 0.97 3.3E-05 40.3 2.6 20 95-114 168-187 (330)
232 2h58_A Kinesin-like protein KI 79.0 1.5 5E-05 39.2 3.7 26 90-115 71-98 (330)
233 4a14_A Kinesin, kinesin-like p 78.9 1.5 5E-05 39.5 3.7 25 91-115 75-101 (344)
234 2zfi_A Kinesin-like protein KI 78.8 1.5 5E-05 39.8 3.7 26 90-115 80-107 (366)
235 2vvg_A Kinesin-2; motor protei 78.8 1.5 5.1E-05 39.5 3.7 25 91-115 81-107 (350)
236 2z0m_A 337AA long hypothetical 78.8 3.4 0.00012 35.8 6.1 69 184-266 220-292 (337)
237 2y65_A Kinesin, kinesin heavy 78.7 1.5 5.1E-05 39.8 3.7 25 91-115 76-102 (365)
238 1lvg_A Guanylate kinase, GMP k 78.7 1 3.5E-05 36.7 2.5 19 97-115 3-21 (198)
239 1v8k_A Kinesin-like protein KI 78.7 1.3 4.6E-05 40.7 3.4 26 91-116 146-173 (410)
240 2eyu_A Twitching motility prot 78.6 0.98 3.3E-05 38.8 2.4 21 95-115 22-42 (261)
241 4ag6_A VIRB4 ATPase, type IV s 78.5 2 6.8E-05 39.0 4.6 26 97-122 34-59 (392)
242 1goj_A Kinesin, kinesin heavy 78.4 1.5 5.1E-05 39.6 3.6 25 91-115 72-98 (355)
243 3u4q_B ATP-dependent helicase/ 78.3 3 0.0001 43.7 6.4 24 102-125 5-28 (1166)
244 3hu3_A Transitional endoplasmi 78.3 1.1 3.7E-05 42.3 2.8 53 61-115 201-255 (489)
245 3lre_A Kinesin-like protein KI 78.2 1.5 5.2E-05 39.6 3.6 25 91-115 97-123 (355)
246 3b6u_A Kinesin-like protein KI 78.2 1.5 5E-05 39.9 3.5 25 91-115 93-119 (372)
247 3gbj_A KIF13B protein; kinesin 78.1 1.5 5.1E-05 39.6 3.5 26 90-115 83-110 (354)
248 1t5c_A CENP-E protein, centrom 78.1 1.5 5.1E-05 39.5 3.5 25 91-115 69-95 (349)
249 2nr8_A Kinesin-like protein KI 77.9 1.5 5.2E-05 39.6 3.5 26 90-115 94-121 (358)
250 3eiq_A Eukaryotic initiation f 77.8 1.8 6.3E-05 38.9 4.1 70 185-264 281-354 (414)
251 3vkg_A Dynein heavy chain, cyt 77.8 2.6 9E-05 48.4 6.0 49 68-117 873-925 (3245)
252 3vaa_A Shikimate kinase, SK; s 77.7 1.1 3.8E-05 36.4 2.4 19 97-115 24-42 (199)
253 3fe2_A Probable ATP-dependent 77.7 1.8 6E-05 36.3 3.7 29 146-174 103-131 (242)
254 2wbe_C Bipolar kinesin KRP-130 77.6 1.5 5.2E-05 39.8 3.5 25 91-115 92-118 (373)
255 2zts_A Putative uncharacterize 77.4 2 6.7E-05 35.7 3.9 26 98-123 30-55 (251)
256 1x88_A Kinesin-like protein KI 77.3 1.5 5E-05 39.7 3.2 26 90-115 79-106 (359)
257 3u06_A Protein claret segregat 77.1 1.6 5.3E-05 40.3 3.4 26 90-115 129-156 (412)
258 3rc3_A ATP-dependent RNA helic 77.0 6.3 0.00022 38.7 7.9 74 186-270 322-401 (677)
259 1tue_A Replication protein E1; 76.9 3.5 0.00012 34.2 5.2 51 70-123 28-82 (212)
260 3cob_A Kinesin heavy chain-lik 76.7 1.4 4.8E-05 40.0 2.9 25 91-115 71-97 (369)
261 2heh_A KIF2C protein; kinesin, 76.6 1.7 5.7E-05 39.7 3.4 26 91-116 126-153 (387)
262 3bfn_A Kinesin-like protein KI 76.5 1.6 5.4E-05 39.9 3.2 23 93-115 92-116 (388)
263 3tau_A Guanylate kinase, GMP k 76.2 1.7 5.7E-05 35.7 3.1 19 97-115 7-25 (208)
264 1ry6_A Internal kinesin; kines 76.2 1.7 5.9E-05 39.2 3.4 19 97-115 82-102 (360)
265 2j41_A Guanylate kinase; GMP, 76.2 1.2 4.2E-05 36.0 2.2 20 96-115 4-23 (207)
266 2owm_A Nckin3-434, related to 76.0 1.9 6.5E-05 40.1 3.7 25 91-115 128-154 (443)
267 3exa_A TRNA delta(2)-isopenten 75.9 1.3 4.3E-05 39.4 2.4 17 99-115 4-20 (322)
268 4gl2_A Interferon-induced heli 75.9 1.6 5.4E-05 42.7 3.3 74 184-263 400-487 (699)
269 2qor_A Guanylate kinase; phosp 75.8 1.3 4.3E-05 36.2 2.2 21 95-115 9-29 (204)
270 3foz_A TRNA delta(2)-isopenten 75.8 1.3 4.4E-05 39.3 2.4 19 267-285 218-236 (316)
271 2ius_A DNA translocase FTSK; n 75.8 2.4 8.2E-05 40.2 4.4 29 97-125 166-194 (512)
272 3trf_A Shikimate kinase, SK; a 75.8 1.3 4.5E-05 35.2 2.3 19 98-116 5-23 (185)
273 2rep_A Kinesin-like protein KI 75.7 2 6.8E-05 39.1 3.7 25 91-115 107-133 (376)
274 3b5x_A Lipid A export ATP-bind 75.6 4.3 0.00015 39.0 6.3 31 256-286 496-526 (582)
275 1ex7_A Guanylate kinase; subst 75.5 1.4 4.9E-05 35.8 2.5 16 99-114 2-17 (186)
276 1zp6_A Hypothetical protein AT 75.3 0.92 3.2E-05 36.3 1.2 21 95-115 6-26 (191)
277 3iuy_A Probable ATP-dependent 75.2 1.6 5.5E-05 36.0 2.8 24 146-169 95-118 (228)
278 3lw7_A Adenylate kinase relate 75.1 1.4 4.7E-05 34.3 2.2 16 100-115 3-18 (179)
279 3dmq_A RNA polymerase-associat 75.0 14 0.00048 37.9 10.2 76 184-268 503-584 (968)
280 1qhx_A CPT, protein (chloramph 74.9 1.4 4.8E-05 34.7 2.2 18 98-115 3-20 (178)
281 3a8t_A Adenylate isopentenyltr 74.9 1.4 4.7E-05 39.5 2.4 17 99-115 41-57 (339)
282 3t15_A Ribulose bisphosphate c 74.9 1.2 4.1E-05 38.8 1.9 17 99-115 37-53 (293)
283 3o8b_A HCV NS3 protease/helica 74.9 3.6 0.00012 40.3 5.5 66 184-263 396-461 (666)
284 3a00_A Guanylate kinase, GMP k 74.8 1.6 5.5E-05 35.0 2.6 17 99-115 2-18 (186)
285 3tr0_A Guanylate kinase, GMP k 74.7 1.5 5.1E-05 35.4 2.4 19 97-115 6-24 (205)
286 1um8_A ATP-dependent CLP prote 74.5 1.6 5.3E-05 39.4 2.7 18 98-115 72-89 (376)
287 4akg_A Glutathione S-transfera 74.4 3 0.0001 47.4 5.3 49 68-117 890-942 (2695)
288 2qmh_A HPR kinase/phosphorylas 74.3 1.3 4.4E-05 36.7 1.8 19 97-115 33-51 (205)
289 4fcw_A Chaperone protein CLPB; 74.2 1.6 5.6E-05 37.8 2.7 18 99-116 48-65 (311)
290 1z6g_A Guanylate kinase; struc 74.2 1.7 5.9E-05 36.0 2.7 21 95-115 20-40 (218)
291 2c9o_A RUVB-like 1; hexameric 74.0 1.4 4.8E-05 41.0 2.3 47 62-116 35-81 (456)
292 1kag_A SKI, shikimate kinase I 73.9 1.8 6.1E-05 33.9 2.6 18 98-115 4-21 (173)
293 1sxj_B Activator 1 37 kDa subu 73.8 3.2 0.00011 35.9 4.5 43 59-116 16-60 (323)
294 2whx_A Serine protease/ntpase/ 73.7 7.3 0.00025 37.8 7.4 67 185-263 356-423 (618)
295 2ykg_A Probable ATP-dependent 73.6 2.2 7.6E-05 41.6 3.7 75 184-264 398-485 (696)
296 2ze6_A Isopentenyl transferase 73.5 1.5 5.1E-05 37.3 2.2 16 100-115 3-18 (253)
297 2px0_A Flagellar biosynthesis 73.2 2.4 8.2E-05 37.1 3.5 20 98-117 105-124 (296)
298 2ewv_A Twitching motility prot 72.9 1.6 5.4E-05 39.6 2.3 21 95-115 133-153 (372)
299 3ney_A 55 kDa erythrocyte memb 72.9 2.2 7.4E-05 35.1 2.9 19 97-115 18-36 (197)
300 3bor_A Human initiation factor 72.9 1.7 5.9E-05 36.2 2.4 24 148-171 101-124 (237)
301 2r62_A Cell division protease 72.9 0.92 3.2E-05 38.6 0.7 51 61-116 8-62 (268)
302 1y63_A LMAJ004144AAA protein; 72.8 1.7 5.7E-05 34.8 2.2 19 97-115 9-27 (184)
303 3ber_A Probable ATP-dependent 72.3 2.1 7.3E-05 36.1 2.9 26 148-173 114-139 (249)
304 1s96_A Guanylate kinase, GMP k 72.0 1.9 6.4E-05 36.0 2.4 21 95-115 13-33 (219)
305 2pl3_A Probable ATP-dependent 72.0 2.2 7.7E-05 35.3 2.9 26 146-171 98-123 (236)
306 4eun_A Thermoresistant glucoki 72.0 1.9 6.5E-05 35.0 2.4 19 97-115 28-46 (200)
307 1znw_A Guanylate kinase, GMP k 71.9 1.9 6.5E-05 35.2 2.4 22 94-115 16-37 (207)
308 4gp7_A Metallophosphoesterase; 71.6 1.6 5.5E-05 34.5 1.8 21 97-117 8-28 (171)
309 2oca_A DAR protein, ATP-depend 71.5 9.2 0.00031 35.6 7.4 74 186-268 349-426 (510)
310 1ly1_A Polynucleotide kinase; 71.3 1.9 6.5E-05 33.8 2.2 16 100-115 4-19 (181)
311 1kht_A Adenylate kinase; phosp 71.2 2 6.8E-05 34.1 2.3 18 98-115 3-20 (192)
312 3kb2_A SPBC2 prophage-derived 70.4 2.1 7E-05 33.3 2.2 16 100-115 3-18 (173)
313 4f4c_A Multidrug resistance pr 69.8 0.65 2.2E-05 49.4 -1.2 41 256-300 570-610 (1321)
314 3fho_A ATP-dependent RNA helic 69.7 2.4 8.1E-05 40.0 2.8 71 185-265 358-432 (508)
315 2z83_A Helicase/nucleoside tri 69.7 5.8 0.0002 36.8 5.4 67 185-263 191-258 (459)
316 1knq_A Gluconate kinase; ALFA/ 69.7 1.9 6.4E-05 33.9 1.8 18 98-115 8-25 (175)
317 2iut_A DNA translocase FTSK; n 69.6 4 0.00014 39.2 4.4 29 98-126 214-242 (574)
318 2r2a_A Uncharacterized protein 69.1 3.3 0.00011 33.9 3.2 17 101-117 8-24 (199)
319 3io5_A Recombination and repai 69.0 8 0.00027 34.4 5.9 21 100-120 30-50 (333)
320 3cf2_A TER ATPase, transitiona 68.7 2.2 7.4E-05 42.9 2.4 52 61-115 474-528 (806)
321 4a2p_A RIG-I, retinoic acid in 68.7 9.1 0.00031 35.7 6.7 75 185-265 391-478 (556)
322 3crm_A TRNA delta(2)-isopenten 68.7 2.4 8E-05 37.8 2.4 19 267-285 224-242 (323)
323 1qvr_A CLPB protein; coiled co 68.5 29 0.00098 34.9 10.6 17 99-115 192-208 (854)
324 2gxq_A Heat resistant RNA depe 68.0 3 0.0001 33.5 2.8 25 146-170 73-97 (207)
325 3fmp_B ATP-dependent RNA helic 67.5 1.1 3.8E-05 41.7 0.0 69 185-263 334-406 (479)
326 1m7g_A Adenylylsulfate kinase; 67.5 3.6 0.00012 33.5 3.2 30 85-115 13-42 (211)
327 2cvh_A DNA repair and recombin 67.5 2.9 9.8E-05 34.0 2.6 22 97-118 19-40 (220)
328 3d3q_A TRNA delta(2)-isopenten 67.4 2.6 8.8E-05 37.8 2.4 16 100-115 9-24 (340)
329 1tf5_A Preprotein translocase 67.4 19 0.00066 36.1 8.8 54 185-242 433-488 (844)
330 2va8_A SSO2462, SKI2-type heli 67.4 11 0.00037 37.0 7.1 74 185-264 253-362 (715)
331 3f9v_A Minichromosome maintena 67.1 3 0.0001 40.3 3.0 15 100-114 329-343 (595)
332 3eph_A TRNA isopentenyltransfe 67.1 2.4 8.3E-05 38.9 2.2 16 100-115 4-19 (409)
333 2bdt_A BH3686; alpha-beta prot 66.9 2.6 9E-05 33.6 2.2 17 99-115 3-19 (189)
334 3pxg_A Negative regulator of g 66.8 3.3 0.00011 38.7 3.1 19 98-116 201-219 (468)
335 3nwj_A ATSK2; P loop, shikimat 66.7 3.6 0.00012 35.1 3.1 20 96-115 46-65 (250)
336 3cm0_A Adenylate kinase; ATP-b 66.4 2 6.9E-05 34.0 1.4 19 97-115 3-21 (186)
337 3t61_A Gluconokinase; PSI-biol 66.2 2.8 9.5E-05 33.9 2.2 17 99-115 19-35 (202)
338 1f2t_A RAD50 ABC-ATPase; DNA d 66.1 2.9 9.9E-05 32.4 2.2 15 100-114 25-39 (149)
339 4a2q_A RIG-I, retinoic acid in 65.9 11 0.00037 37.6 6.9 75 185-265 632-719 (797)
340 1n0w_A DNA repair protein RAD5 65.7 3.1 0.00011 34.4 2.4 23 97-119 23-45 (243)
341 3k1j_A LON protease, ATP-depen 65.5 4.3 0.00015 39.2 3.7 22 94-115 56-77 (604)
342 3kta_A Chromosome segregation 65.4 2.8 9.5E-05 33.2 2.0 16 100-115 28-43 (182)
343 3lnc_A Guanylate kinase, GMP k 65.3 2.2 7.7E-05 35.3 1.5 21 95-115 24-44 (231)
344 3uie_A Adenylyl-sulfate kinase 65.3 2.6 8.9E-05 34.1 1.9 20 96-115 23-42 (200)
345 2i3b_A HCR-ntpase, human cance 65.2 4.7 0.00016 32.6 3.4 30 256-285 103-134 (189)
346 1in4_A RUVB, holliday junction 65.0 4 0.00014 36.1 3.2 18 99-116 52-69 (334)
347 1gvn_B Zeta; postsegregational 64.9 2.8 9.6E-05 36.4 2.1 17 99-115 34-50 (287)
348 3pvs_A Replication-associated 64.5 2.9 9.8E-05 38.9 2.2 18 99-116 51-68 (447)
349 2zj8_A DNA helicase, putative 63.9 12 0.0004 36.8 6.6 74 185-265 238-344 (720)
350 3qf7_A RAD50; ABC-ATPase, ATPa 63.9 3.1 0.0001 37.5 2.2 41 257-300 302-342 (365)
351 2qt1_A Nicotinamide riboside k 63.7 1.8 6.2E-05 35.2 0.6 23 93-115 16-38 (207)
352 3fmo_B ATP-dependent RNA helic 63.6 3.4 0.00012 36.0 2.4 23 148-170 165-187 (300)
353 1q0u_A Bstdead; DEAD protein, 63.6 3.6 0.00012 33.6 2.4 25 147-171 74-98 (219)
354 3tif_A Uncharacterized ABC tra 63.5 2.9 0.0001 35.1 1.9 30 257-286 162-191 (235)
355 1wrb_A DJVLGB; RNA helicase, D 63.5 3.6 0.00012 34.5 2.4 27 146-172 101-127 (253)
356 2ffh_A Protein (FFH); SRP54, s 63.4 8.2 0.00028 35.6 5.0 19 98-116 98-116 (425)
357 4h1g_A Maltose binding protein 63.4 4.9 0.00017 39.7 3.7 26 90-115 453-480 (715)
358 1ye8_A Protein THEP1, hypothet 63.2 4.5 0.00015 32.3 2.9 16 100-115 2-17 (178)
359 4a74_A DNA repair and recombin 63.2 2.9 9.9E-05 34.2 1.8 21 97-117 24-44 (231)
360 2rhm_A Putative kinase; P-loop 62.9 3.3 0.00011 32.9 2.0 18 98-115 5-22 (193)
361 3c8u_A Fructokinase; YP_612366 62.6 3 0.0001 34.0 1.8 18 97-114 21-38 (208)
362 1tev_A UMP-CMP kinase; ploop, 62.6 3.6 0.00012 32.6 2.2 18 98-115 3-20 (196)
363 1g41_A Heat shock protein HSLU 62.6 3.6 0.00012 38.3 2.5 18 98-115 50-67 (444)
364 2ce7_A Cell division protein F 62.6 3.2 0.00011 39.0 2.1 52 61-115 13-66 (476)
365 1via_A Shikimate kinase; struc 62.4 4 0.00014 32.0 2.5 17 99-115 5-21 (175)
366 2oxc_A Probable ATP-dependent 62.4 3.9 0.00013 33.8 2.4 23 148-170 95-117 (230)
367 2c95_A Adenylate kinase 1; tra 62.0 3.8 0.00013 32.6 2.3 19 97-115 8-26 (196)
368 3lda_A DNA repair protein RAD5 61.8 13 0.00043 34.0 5.9 24 62-85 85-108 (400)
369 2v54_A DTMP kinase, thymidylat 61.8 3.9 0.00013 32.8 2.3 19 97-115 3-21 (204)
370 1t6n_A Probable ATP-dependent 61.7 4.1 0.00014 33.2 2.4 23 148-170 85-107 (220)
371 2p6r_A Afuhel308 helicase; pro 61.6 14 0.00048 36.1 6.7 73 185-263 243-345 (702)
372 4akg_A Glutathione S-transfera 61.5 3.5 0.00012 46.8 2.5 21 95-115 1264-1284(2695)
373 1nlf_A Regulatory protein REPA 61.2 3.8 0.00013 35.1 2.3 27 93-119 25-51 (279)
374 3fb4_A Adenylate kinase; psych 61.2 3.9 0.00013 33.3 2.2 16 100-115 2-17 (216)
375 1zuh_A Shikimate kinase; alpha 61.1 4 0.00014 31.8 2.2 17 99-115 8-24 (168)
376 2pez_A Bifunctional 3'-phospho 61.1 3.5 0.00012 32.5 1.9 19 97-115 4-22 (179)
377 3cmw_A Protein RECA, recombina 61.0 7.6 0.00026 42.2 4.8 25 98-123 1431-1455(1706)
378 3pxi_A Negative regulator of g 60.8 5 0.00017 39.8 3.3 19 98-116 201-219 (758)
379 1cr0_A DNA primase/helicase; R 60.6 5.4 0.00018 34.4 3.1 24 95-118 32-55 (296)
380 3ly5_A ATP-dependent RNA helic 60.5 4.3 0.00015 34.4 2.4 26 146-171 127-152 (262)
381 2bwj_A Adenylate kinase 5; pho 60.5 4.4 0.00015 32.3 2.4 19 97-115 11-29 (199)
382 2iyv_A Shikimate kinase, SK; t 60.5 4.8 0.00017 31.7 2.6 17 99-115 3-19 (184)
383 1nks_A Adenylate kinase; therm 60.5 3.8 0.00013 32.3 2.0 16 100-115 3-18 (194)
384 3asz_A Uridine kinase; cytidin 60.3 3.4 0.00012 33.5 1.7 18 98-115 6-23 (211)
385 1sgw_A Putative ABC transporte 60.2 4 0.00014 33.8 2.1 31 256-286 149-179 (214)
386 2cbz_A Multidrug resistance-as 60.1 3.7 0.00012 34.6 1.9 19 96-114 29-47 (237)
387 2i3b_A HCR-ntpase, human cance 60.0 6.4 0.00022 31.8 3.3 18 98-115 1-18 (189)
388 1e6c_A Shikimate kinase; phosp 59.8 4.8 0.00016 31.3 2.5 17 99-115 3-19 (173)
389 1qf9_A UMP/CMP kinase, protein 59.7 4 0.00014 32.2 2.0 16 100-115 8-23 (194)
390 2v9p_A Replication protein E1; 59.7 5 0.00017 35.3 2.7 20 95-114 123-142 (305)
391 3dl0_A Adenylate kinase; phosp 59.6 4.3 0.00015 33.1 2.2 16 100-115 2-17 (216)
392 1zd8_A GTP:AMP phosphotransfer 59.5 4 0.00014 33.7 2.0 18 98-115 7-24 (227)
393 2yvu_A Probable adenylyl-sulfa 59.3 3.9 0.00013 32.5 1.9 19 97-115 12-30 (186)
394 3sfz_A APAF-1, apoptotic pepti 59.2 34 0.0012 35.3 9.4 46 198-243 221-266 (1249)
395 1cke_A CK, MSSA, protein (cyti 59.0 4.4 0.00015 33.1 2.2 17 99-115 6-22 (227)
396 1rif_A DAR protein, DNA helica 58.8 4.5 0.00015 34.6 2.3 22 149-170 161-182 (282)
397 1aky_A Adenylate kinase; ATP:A 58.7 4.8 0.00016 32.9 2.4 18 98-115 4-21 (220)
398 4a2w_A RIG-I, retinoic acid in 58.6 9.6 0.00033 38.9 5.0 78 183-266 630-720 (936)
399 3auy_A DNA double-strand break 58.5 4.1 0.00014 36.7 2.0 15 101-115 28-42 (371)
400 2bbw_A Adenylate kinase 4, AK4 58.5 4.5 0.00015 33.8 2.2 18 98-115 27-44 (246)
401 2if2_A Dephospho-COA kinase; a 58.4 4.3 0.00015 32.6 2.0 16 100-115 3-18 (204)
402 1ukz_A Uridylate kinase; trans 58.3 4.7 0.00016 32.4 2.2 17 99-115 16-32 (203)
403 1zak_A Adenylate kinase; ATP:A 58.3 5.1 0.00017 32.8 2.4 18 98-115 5-22 (222)
404 1vec_A ATP-dependent RNA helic 58.2 5.1 0.00018 32.1 2.4 25 147-171 73-97 (206)
405 2pze_A Cystic fibrosis transme 57.9 4.1 0.00014 34.0 1.8 19 96-114 32-50 (229)
406 1jjv_A Dephospho-COA kinase; P 57.8 4.8 0.00017 32.5 2.2 16 100-115 4-19 (206)
407 2pcj_A ABC transporter, lipopr 57.7 3.5 0.00012 34.3 1.4 31 256-286 156-186 (224)
408 1fuu_A Yeast initiation factor 57.6 2.2 7.4E-05 38.1 0.0 70 185-264 260-333 (394)
409 3oiy_A Reverse gyrase helicase 57.5 12 0.00042 33.6 5.2 67 185-264 253-326 (414)
410 2cdn_A Adenylate kinase; phosp 57.5 5.3 0.00018 32.1 2.4 17 99-115 21-37 (201)
411 3qks_A DNA double-strand break 57.0 5.1 0.00017 32.7 2.2 16 100-115 25-40 (203)
412 2pt5_A Shikimate kinase, SK; a 56.8 5.3 0.00018 30.9 2.2 16 100-115 2-17 (168)
413 3kta_B Chromosome segregation 56.6 6.7 0.00023 31.3 2.8 39 258-300 86-124 (173)
414 2jaq_A Deoxyguanosine kinase; 56.6 5.2 0.00018 31.9 2.2 16 100-115 2-17 (205)
415 3mm4_A Histidine kinase homolo 56.6 52 0.0018 26.2 8.4 29 93-121 15-43 (206)
416 3gfo_A Cobalt import ATP-bindi 56.2 4.4 0.00015 35.0 1.8 18 97-114 33-50 (275)
417 1nkt_A Preprotein translocase 56.2 27 0.00093 35.3 7.6 54 185-242 461-516 (922)
418 3a4m_A L-seryl-tRNA(SEC) kinas 56.2 5.2 0.00018 33.9 2.2 17 99-115 5-21 (260)
419 1ji0_A ABC transporter; ATP bi 56.0 4.6 0.00016 34.0 1.8 30 257-286 156-185 (240)
420 2dhr_A FTSH; AAA+ protein, hex 56.0 4.8 0.00016 38.0 2.1 51 60-115 27-81 (499)
421 2plr_A DTMP kinase, probable t 56.0 4.8 0.00016 32.4 1.9 18 98-115 4-21 (213)
422 1g6h_A High-affinity branched- 55.9 4.6 0.00016 34.4 1.8 30 257-286 170-199 (257)
423 2vli_A Antibiotic resistance p 55.8 4.4 0.00015 31.8 1.6 18 98-115 5-22 (183)
424 2wwf_A Thymidilate kinase, put 55.8 5.4 0.00018 32.2 2.2 19 97-115 9-27 (212)
425 4g1u_C Hemin import ATP-bindin 55.5 4.7 0.00016 34.6 1.8 18 97-114 36-53 (266)
426 1ypw_A Transitional endoplasmi 55.3 2.2 7.6E-05 42.9 -0.4 52 61-115 474-528 (806)
427 1nn5_A Similar to deoxythymidy 55.3 5.6 0.00019 32.1 2.2 19 97-115 8-26 (215)
428 3bh0_A DNAB-like replicative h 55.1 7.6 0.00026 34.0 3.2 25 97-121 67-91 (315)
429 2pbr_A DTMP kinase, thymidylat 55.1 5.7 0.0002 31.3 2.2 15 101-115 3-17 (195)
430 2ghi_A Transport protein; mult 55.0 5.6 0.00019 33.9 2.2 29 258-286 173-201 (260)
431 2z0h_A DTMP kinase, thymidylat 54.9 5.8 0.0002 31.5 2.2 15 101-115 3-17 (197)
432 1b0u_A Histidine permease; ABC 54.9 5 0.00017 34.3 1.9 18 97-114 31-48 (262)
433 2ff7_A Alpha-hemolysin translo 54.8 5.6 0.00019 33.6 2.2 30 257-286 162-191 (247)
434 1rz3_A Hypothetical protein rb 54.5 5.5 0.00019 32.2 2.0 18 98-115 22-39 (201)
435 1qde_A EIF4A, translation init 54.4 6.4 0.00022 32.1 2.4 26 147-172 84-109 (224)
436 1rj9_A FTSY, signal recognitio 54.4 5.9 0.0002 34.7 2.3 18 98-115 102-119 (304)
437 1ak2_A Adenylate kinase isoenz 54.3 5.9 0.0002 32.8 2.2 18 98-115 16-33 (233)
438 1htw_A HI0065; nucleotide-bind 54.2 4.7 0.00016 31.6 1.5 19 96-114 31-49 (158)
439 2qi9_C Vitamin B12 import ATP- 54.1 5.1 0.00018 34.0 1.8 19 97-115 25-43 (249)
440 2f1r_A Molybdopterin-guanine d 54.1 4.4 0.00015 32.3 1.3 16 100-115 4-19 (171)
441 2yz2_A Putative ABC transporte 54.1 5.2 0.00018 34.2 1.9 19 97-115 32-50 (266)
442 4e22_A Cytidylate kinase; P-lo 54.1 6.2 0.00021 33.3 2.3 19 97-115 26-44 (252)
443 3b9q_A Chloroplast SRP recepto 54.0 5.2 0.00018 35.0 1.9 19 97-115 99-117 (302)
444 1ypw_A Transitional endoplasmi 53.9 4.9 0.00017 40.3 1.9 19 97-115 237-255 (806)
445 1vpl_A ABC transporter, ATP-bi 53.8 5.3 0.00018 34.0 1.9 18 97-114 40-57 (256)
446 2fsf_A Preprotein translocase 53.5 17 0.00058 36.5 5.6 54 185-242 442-497 (853)
447 2nq2_C Hypothetical ABC transp 53.5 5.3 0.00018 34.0 1.8 18 97-114 30-47 (253)
448 3pxi_A Negative regulator of g 53.5 8.7 0.0003 38.1 3.6 17 100-116 523-539 (758)
449 3hr8_A Protein RECA; alpha and 53.5 30 0.001 31.0 6.9 20 97-116 60-79 (356)
450 2ixe_A Antigen peptide transpo 53.3 5.4 0.00019 34.3 1.9 30 257-286 173-202 (271)
451 1r6b_X CLPA protein; AAA+, N-t 53.3 5.8 0.0002 39.3 2.3 19 98-116 207-225 (758)
452 3vkg_A Dynein heavy chain, cyt 53.2 6 0.00021 45.6 2.6 20 95-114 1301-1320(3245)
453 2d2e_A SUFC protein; ABC-ATPas 53.0 7 0.00024 33.0 2.5 29 258-286 161-189 (250)
454 1mv5_A LMRA, multidrug resista 52.9 5.3 0.00018 33.6 1.7 19 96-114 26-44 (243)
455 1e4v_A Adenylate kinase; trans 52.9 6 0.00021 32.2 2.0 16 100-115 2-17 (214)
456 2olj_A Amino acid ABC transpor 52.6 5.7 0.0002 34.0 1.9 18 97-114 49-66 (263)
457 3qkt_A DNA double-strand break 52.5 6.3 0.00021 34.9 2.2 43 256-301 270-312 (339)
458 2zu0_C Probable ATP-dependent 52.5 7.3 0.00025 33.3 2.6 29 258-286 182-210 (267)
459 1vht_A Dephospho-COA kinase; s 52.5 6.6 0.00023 32.0 2.2 17 99-115 5-21 (218)
460 2xb4_A Adenylate kinase; ATP-b 52.3 6.7 0.00023 32.3 2.2 16 100-115 2-17 (223)
461 2ihy_A ABC transporter, ATP-bi 52.2 5.7 0.00019 34.3 1.8 19 96-114 45-63 (279)
462 1jbk_A CLPB protein; beta barr 52.2 19 0.00065 27.7 4.9 26 259-284 116-148 (195)
463 1uf9_A TT1252 protein; P-loop, 52.1 6.4 0.00022 31.4 2.0 16 100-115 10-25 (203)
464 3be4_A Adenylate kinase; malar 52.0 6.8 0.00023 32.0 2.2 18 98-115 5-22 (217)
465 2p5t_B PEZT; postsegregational 51.7 5.1 0.00017 33.8 1.4 18 98-115 32-49 (253)
466 3nh6_A ATP-binding cassette SU 51.5 5.4 0.00019 35.0 1.6 19 96-114 78-96 (306)
467 1qvr_A CLPB protein; coiled co 51.4 6.4 0.00022 39.7 2.3 16 100-115 590-605 (854)
468 2z43_A DNA repair and recombin 51.3 7.8 0.00027 34.0 2.6 22 98-119 107-128 (324)
469 3l9o_A ATP-dependent RNA helic 51.1 5.4 0.00019 41.5 1.7 44 149-192 231-274 (1108)
470 1r6b_X CLPA protein; AAA+, N-t 50.9 9.5 0.00033 37.7 3.4 17 100-116 490-506 (758)
471 3tlx_A Adenylate kinase 2; str 50.8 7.2 0.00025 32.7 2.2 18 98-115 29-46 (243)
472 4ag6_A VIRB4 ATPase, type IV s 50.6 6.7 0.00023 35.4 2.1 29 258-286 262-293 (392)
473 1z5z_A Helicase of the SNF2/RA 50.5 1E+02 0.0035 26.0 9.6 74 185-267 113-192 (271)
474 2r8r_A Sensor protein; KDPD, P 50.5 13 0.00043 31.2 3.6 23 100-122 8-30 (228)
475 1xjc_A MOBB protein homolog; s 50.2 7 0.00024 31.1 1.9 15 100-114 6-20 (169)
476 2jeo_A Uridine-cytidine kinase 50.1 7.5 0.00026 32.5 2.2 19 97-115 24-42 (245)
477 3cf2_A TER ATPase, transitiona 50.0 6.8 0.00023 39.3 2.2 17 99-115 239-255 (806)
478 2qen_A Walker-type ATPase; unk 49.7 9.4 0.00032 33.1 2.9 17 98-114 31-47 (350)
479 1odf_A YGR205W, hypothetical 3 49.5 7.6 0.00026 33.7 2.2 16 100-115 33-48 (290)
480 1tf7_A KAIC; homohexamer, hexa 49.4 10 0.00035 35.8 3.2 31 95-125 36-66 (525)
481 2bbs_A Cystic fibrosis transme 49.4 6.4 0.00022 34.2 1.7 19 97-115 63-81 (290)
482 4dzz_A Plasmid partitioning pr 49.4 34 0.0012 27.0 6.1 17 103-119 7-23 (206)
483 1ltq_A Polynucleotide kinase; 49.3 7.6 0.00026 33.4 2.2 16 100-115 4-19 (301)
484 1gtv_A TMK, thymidylate kinase 49.3 4.3 0.00015 32.8 0.6 15 101-115 3-17 (214)
485 2ck3_A ATP synthase subunit al 49.3 76 0.0026 29.8 9.1 36 89-124 150-188 (510)
486 2vhj_A Ntpase P4, P4; non- hyd 48.8 7.9 0.00027 34.4 2.2 23 97-119 122-144 (331)
487 1z6t_A APAF-1, apoptotic prote 48.6 50 0.0017 31.1 8.1 31 213-243 236-266 (591)
488 3sr0_A Adenylate kinase; phosp 48.3 7.6 0.00026 31.8 1.9 16 100-115 2-17 (206)
489 3tqf_A HPR(Ser) kinase; transf 48.1 9.3 0.00032 30.8 2.3 20 97-116 15-34 (181)
490 1np6_A Molybdopterin-guanine d 47.7 8.9 0.00031 30.5 2.2 16 99-114 7-22 (174)
491 3aez_A Pantothenate kinase; tr 47.6 8.4 0.00029 33.8 2.2 19 97-115 89-107 (312)
492 1gm5_A RECG; helicase, replica 47.2 5.9 0.0002 39.6 1.2 94 185-288 579-683 (780)
493 2og2_A Putative signal recogni 47.1 7.5 0.00026 35.0 1.8 18 98-115 157-174 (359)
494 2grj_A Dephospho-COA kinase; T 47.1 8.8 0.0003 31.0 2.1 16 100-115 14-29 (192)
495 2zr9_A Protein RECA, recombina 46.9 11 0.00039 33.6 3.0 27 96-122 59-85 (349)
496 2h17_A ADP-ribosylation factor 46.8 6 0.0002 30.9 1.0 27 88-114 11-37 (181)
497 1svm_A Large T antigen; AAA+ f 46.4 8.7 0.0003 34.8 2.1 19 97-115 168-186 (377)
498 2pjz_A Hypothetical protein ST 46.3 9.3 0.00032 32.7 2.2 30 257-286 145-174 (263)
499 3sop_A Neuronal-specific septi 45.8 8.3 0.00028 33.0 1.8 16 100-115 4-19 (270)
500 1ko7_A HPR kinase/phosphatase; 45.7 46 0.0016 29.2 6.7 49 67-115 91-161 (314)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=9.8e-42 Score=299.06 Aligned_cols=193 Identities=47% Similarity=0.751 Sum_probs=176.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.+.||.+|+++|.++|+.+++|+|++++||||||||++|++|++..+......
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~----------- 97 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL----------- 97 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-----------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-----------
Confidence 589999999999999999999999999999999999999999999999999999999999988754310
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
....++++||++||++|+.|+++.++.+....++++..++|
T Consensus 98 ---------------------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g 138 (242)
T 3fe2_A 98 ---------------------------------------ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 138 (242)
T ss_dssp ---------------------------------------CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred ---------------------------------------ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC
Confidence 01123789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+...+..+++|+|+||++|.+++.++...++++++|||||||++++++|...+..++..+ +.++|+++||
T Consensus 139 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----~~~~q~~~~S 214 (242)
T 3fe2_A 139 GAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----RPDRQTLMWS 214 (242)
T ss_dssp TSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS----CSSCEEEEEE
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC----CccceEEEEE
Confidence 999998888888899999999999999999988889999999999999999999999999999887 4578999999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||+|+++
T Consensus 215 AT~~~~~ 221 (242)
T 3fe2_A 215 ATWPKEV 221 (242)
T ss_dssp SCCCHHH
T ss_pred eecCHHH
Confidence 9999764
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-40 Score=315.79 Aligned_cols=195 Identities=52% Similarity=0.854 Sum_probs=178.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|++++|++.++++|.++||.+||++|.++||.+++|+|++++|+||||||++|++|+++.+......
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~----------- 124 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE----------- 124 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-----------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-----------
Confidence 589999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.....+++||++|||+|+.|+++++++++...++++.+++|
T Consensus 125 ---------------------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~g 165 (434)
T 2db3_A 125 ---------------------------------------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG 165 (434)
T ss_dssp ---------------------------------------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECT
T ss_pred ---------------------------------------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 01123789999999999999999999999999999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+...+..+++|+|+||++|.+++.++.+.++++++|||||||+|++++|..++..|+..+.. ..++|+++||
T Consensus 166 g~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~S 243 (434)
T 2db3_A 166 GTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--RPEHQTLMFS 243 (434)
T ss_dssp TSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS--CSSCEEEEEE
T ss_pred CCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC--CCCceEEEEe
Confidence 99999988888889999999999999999998888999999999999999999999999999988643 4579999999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||+|+++
T Consensus 244 AT~~~~~ 250 (434)
T 2db3_A 244 ATFPEEI 250 (434)
T ss_dssp SCCCHHH
T ss_pred ccCCHHH
Confidence 9999754
No 3
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=288.66 Aligned_cols=193 Identities=40% Similarity=0.628 Sum_probs=165.3
Q ss_pred CCccC-CCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDD-IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~-l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
.+|++ +++++.++++|.++||.+||++|.++|+.+++|+|++++||||||||++|++|++..+......
T Consensus 19 ~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---------- 88 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---------- 88 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------------
T ss_pred hhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch----------
Confidence 57999 7999999999999999999999999999999999999999999999999999999887543210
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.....+++++|++||++|+.|+++.++.+. ..++++..++
T Consensus 89 ---------------------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~ 128 (228)
T 3iuy_A 89 ---------------------------------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIY 128 (228)
T ss_dssp -------------------------------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEEC
T ss_pred ---------------------------------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEE
Confidence 001123789999999999999999999986 4578899999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
||.....+...+..+++|+|+||++|.+++.+..+.++++++|||||||++++++|...+..++..+ +.++|+++|
T Consensus 129 ~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~ 204 (228)
T 3iuy_A 129 GGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMT 204 (228)
T ss_dssp C------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS----CSSCEEEEE
T ss_pred CCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhC----CcCCeEEEE
Confidence 9999888888888899999999999999999988889999999999999999999999999999987 457899999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+++
T Consensus 205 SAT~~~~~ 212 (228)
T 3iuy_A 205 SATWPDTV 212 (228)
T ss_dssp ESCCCHHH
T ss_pred EeeCCHHH
Confidence 99999764
No 4
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-39 Score=276.78 Aligned_cols=188 Identities=32% Similarity=0.596 Sum_probs=171.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------------- 69 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK------------- 69 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC-------------
Confidence 4799999999999999999999999999999999999999999999999999999999998763321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
..++++|++||++|+.|+++.++.+.... ++++..++
T Consensus 70 ------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 107 (206)
T 1vec_A 70 ------------------------------------------DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATT 107 (206)
T ss_dssp ------------------------------------------CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEEC
T ss_pred ------------------------------------------CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 12679999999999999999999998776 78899999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|+.....+...+..+++|+|+||++|.+++.++...+++++++|+||||++++.+|...++.++..+ +.++|+++|
T Consensus 108 g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~ 183 (206)
T 1vec_A 108 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL----PKNRQILLY 183 (206)
T ss_dssp SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHS----CTTCEEEEE
T ss_pred CCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhC----CccceEEEE
Confidence 9999888888888899999999999999999888889999999999999999999999999999987 457899999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+++
T Consensus 184 SAT~~~~~ 191 (206)
T 1vec_A 184 SATFPLSV 191 (206)
T ss_dssp ESCCCHHH
T ss_pred EeeCCHHH
Confidence 99999764
No 5
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=297.73 Aligned_cols=185 Identities=26% Similarity=0.452 Sum_probs=163.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
.+|++++|++.++++|.++||.+||++|.++||.++.| +|++++||||||||++|++|+++.+....
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~----------- 160 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----------- 160 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----------
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-----------
Confidence 58999999999999999999999999999999999998 99999999999999999999998764332
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCV 217 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~ 217 (308)
..+++||++|||+||.|+++.++.++... ++++..
T Consensus 161 --------------------------------------------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~ 196 (300)
T 3fmo_B 161 --------------------------------------------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (300)
T ss_dssp --------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred --------------------------------------------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 12789999999999999999999998765 688888
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCce
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQ 295 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q 295 (308)
++||....... ..+++|+||||++|.+++.+ +.+.++++++|||||||+|++ .+|...+..|+..+ +.++|
T Consensus 197 ~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~----~~~~q 269 (300)
T 3fmo_B 197 AVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQ 269 (300)
T ss_dssp ESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS----CTTCE
T ss_pred EeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC----CCCCE
Confidence 88887654432 45789999999999999966 567789999999999999998 78999999998887 45799
Q ss_pred EEEEeecCCCCC
Q psy12758 296 TLMFSATFPKEI 307 (308)
Q Consensus 296 ~i~~SATl~~~v 307 (308)
+++||||+|+++
T Consensus 270 ~i~~SAT~~~~v 281 (300)
T 3fmo_B 270 MLLFSATFEDSV 281 (300)
T ss_dssp EEEEESCCCHHH
T ss_pred EEEEeccCCHHH
Confidence 999999999865
No 6
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=284.87 Aligned_cols=188 Identities=39% Similarity=0.640 Sum_probs=172.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||..|+++|.++|+.+++|+|++++||||||||++|++|+++.+.....
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~------------ 110 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ------------ 110 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC------------
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC------------
Confidence 57999999999999999999999999999999999999999999999999999999999998865431
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.+++||++||++|+.|+++.++.++...++++..++|
T Consensus 111 -------------------------------------------~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g 147 (249)
T 3ber_A 111 -------------------------------------------RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG 147 (249)
T ss_dssp -------------------------------------------SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT
T ss_pred -------------------------------------------CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC
Confidence 1679999999999999999999999888999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.....+...+..+++|+|+||++|.+++.+ +.+.++++++||+||||++++++|...+..++..+ +.++|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~----~~~~~~l~~ 223 (249)
T 3ber_A 148 GIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI----PRDRKTFLF 223 (249)
T ss_dssp TSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS----CSSSEEEEE
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhC----CCCCeEEEE
Confidence 9998888888888999999999999999876 55778999999999999999999999999999887 457899999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+++
T Consensus 224 SAT~~~~v 231 (249)
T 3ber_A 224 SATMTKKV 231 (249)
T ss_dssp ESSCCHHH
T ss_pred eccCCHHH
Confidence 99999765
No 7
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-39 Score=281.70 Aligned_cols=188 Identities=35% Similarity=0.566 Sum_probs=170.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||||||++|++|+++.+....
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------------- 70 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER------------- 70 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-------------
Confidence 4799999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC----CCceE
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS----QLRPC 216 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~----~~~~~ 216 (308)
..++++|++||++|+.|+++.++.+.... ++++.
T Consensus 71 ------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 108 (219)
T 1q0u_A 71 ------------------------------------------AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVAR 108 (219)
T ss_dssp ------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEE
T ss_pred ------------------------------------------CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEE
Confidence 12679999999999999999999998776 78888
Q ss_pred EEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 217 VVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 217 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
.++||.....+.+.+..+++|+|+||++|.+++.++.+.+++++++|+||||++.+++|...+..++..+ +.++|+
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~ 184 (219)
T 1q0u_A 109 CLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM----PKDLQM 184 (219)
T ss_dssp EECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS----CTTCEE
T ss_pred EEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC----CcccEE
Confidence 9999998877777777789999999999999999888888999999999999999999999999999987 457899
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||+|+++
T Consensus 185 l~~SAT~~~~~ 195 (219)
T 1q0u_A 185 LVFSATIPEKL 195 (219)
T ss_dssp EEEESCCCGGG
T ss_pred EEEecCCCHHH
Confidence 99999999876
No 8
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.3e-40 Score=289.66 Aligned_cols=201 Identities=59% Similarity=0.991 Sum_probs=177.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||.+|+++|.++|+.+++|+|+++++|||||||++|++|+++.+........
T Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~--------- 93 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ--------- 93 (253)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc---------
Confidence 47999999999999999999999999999999999999999999999999999999999998875532000
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
......++++||++||++|+.|+++.++.++...++++..++|
T Consensus 94 -------------------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 136 (253)
T 1wrb_A 94 -------------------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG 136 (253)
T ss_dssp ----------------------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS
T ss_pred -------------------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEEC
Confidence 0001223789999999999999999999999888999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+.+.+..+++|+|+||++|.+++.++.+.++++++||+||||++++++|...+..++..+..+...++|+++||
T Consensus 137 ~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~S 216 (253)
T 1wrb_A 137 GADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFS 216 (253)
T ss_dssp SSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEE
T ss_pred CCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEE
Confidence 99988888888889999999999999999998888999999999999999999999999999997655443478999999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||+|+++
T Consensus 217 AT~~~~~ 223 (253)
T 1wrb_A 217 ATFPKEI 223 (253)
T ss_dssp SSCCHHH
T ss_pred EeCCHHH
Confidence 9999764
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.3e-39 Score=281.82 Aligned_cols=189 Identities=31% Similarity=0.542 Sum_probs=168.3
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
...+|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----------- 90 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----------- 90 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----------
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----------
Confidence 346899999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCV 217 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~ 217 (308)
..+++||++||++|+.|+++.++.+.... ++++..
T Consensus 91 --------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 91 --------------------------------------------LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp --------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred --------------------------------------------CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 12679999999999999999999998765 789999
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCC-CHHHHHHHHHhcCCCCCCCceE
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG-FEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
++||.....+...+. +++|+|+||++|.+++.++.+.+++++++|+||||++++++ |...+..++..+ +..+|+
T Consensus 127 ~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~ 201 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQM 201 (230)
T ss_dssp ECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS----CSSCEE
T ss_pred EeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhC----CCCCeE
Confidence 999988877666654 69999999999999999888888999999999999999998 999999999987 457899
Q ss_pred EEEeecCCCCC
Q psy12758 297 LMFSATFPKEI 307 (308)
Q Consensus 297 i~~SATl~~~v 307 (308)
++||||+|+++
T Consensus 202 l~lSAT~~~~~ 212 (230)
T 2oxc_A 202 LAVSATYPEFL 212 (230)
T ss_dssp EEEESCCCHHH
T ss_pred EEEEeccCHHH
Confidence 99999999764
No 10
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=286.81 Aligned_cols=192 Identities=34% Similarity=0.528 Sum_probs=169.7
Q ss_pred CCccCCC--CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 61 PQFDDIQ--MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 61 ~~f~~l~--l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
.+|++++ +++.++++|.++||.+|+++|.++++.++.|+|++++||||||||++|++|+++.+......
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--------- 122 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--------- 122 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC---------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc---------
Confidence 4688887 99999999999999999999999999999999999999999999999999999988764210
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
...+++++|++||++|+.|+++.++.+....+..+..+
T Consensus 123 ------------------------------------------~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 160 (262)
T 3ly5_A 123 ------------------------------------------PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLI 160 (262)
T ss_dssp ------------------------------------------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred ------------------------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 11236799999999999999999999999989999999
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCC-cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGK-IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~-~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
+||.....+...+..+++|+|+||++|.+++.+.. +.++++++|||||||+|++++|...++.|+..+ +..+|++
T Consensus 161 ~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~----~~~~q~l 236 (262)
T 3ly5_A 161 MGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL----PTRRQTM 236 (262)
T ss_dssp CSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS----CSSSEEE
T ss_pred ECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC----CCCCeEE
Confidence 99999888888888889999999999999887654 778999999999999999999999999999987 4578999
Q ss_pred EEeecCCCCC
Q psy12758 298 MFSATFPKEI 307 (308)
Q Consensus 298 ~~SATl~~~v 307 (308)
+||||+|+++
T Consensus 237 ~~SAT~~~~v 246 (262)
T 3ly5_A 237 LFSATQTRKV 246 (262)
T ss_dssp EECSSCCHHH
T ss_pred EEEecCCHHH
Confidence 9999999865
No 11
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.8e-39 Score=282.63 Aligned_cols=188 Identities=39% Similarity=0.536 Sum_probs=160.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+....
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~------------- 96 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF------------- 96 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-------------
Confidence 6799999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
..+++||++||++|+.|+++.++.++...++++..++|
T Consensus 97 ------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 134 (237)
T 3bor_A 97 ------------------------------------------KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG 134 (237)
T ss_dssp ------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC
T ss_pred ------------------------------------------CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEEC
Confidence 12679999999999999999999999888899999999
Q ss_pred CCchhHhHHhhcCC-CeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLDRG-CHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~~~-~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.....+...+..+ ++|+|+||++|.+++.++.+.++++++||+||||++++++|...+..++..+ +.++|+++|
T Consensus 135 ~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~ 210 (237)
T 3bor_A 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLL 210 (237)
T ss_dssp -------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEE
T ss_pred CCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEE
Confidence 98887777777555 8999999999999999888889999999999999999999999999999987 457899999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+++
T Consensus 211 SAT~~~~~ 218 (237)
T 3bor_A 211 SATMPTDV 218 (237)
T ss_dssp CSSCCHHH
T ss_pred EEecCHHH
Confidence 99999764
No 12
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=276.18 Aligned_cols=191 Identities=34% Similarity=0.567 Sum_probs=168.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+......
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----------- 93 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----------- 93 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC-----------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc-----------
Confidence 579999999999999999999999999999999999999999999999999999999999988754210
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
...+++++|++||++|+.|+++.++.+....++++..++|
T Consensus 94 ----------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 133 (236)
T 2pl3_A 94 ----------------------------------------STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIG 133 (236)
T ss_dssp ----------------------------------------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECC
T ss_pred ----------------------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEEC
Confidence 1123779999999999999999999999888899999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcC-CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERG-KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.....+...+ .+++|+|+||++|.+++.+. .+.+.++++||+||||++++++|...+..++..+ +.++|+++|
T Consensus 134 ~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~ 208 (236)
T 2pl3_A 134 GKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL----PKKRQTLLF 208 (236)
T ss_dssp C--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS----CTTSEEEEE
T ss_pred CCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhC----CCCCeEEEE
Confidence 98877766665 47899999999999988765 4678899999999999999999999999999987 457899999
Q ss_pred eecCCCCC
Q psy12758 300 SATFPKEI 307 (308)
Q Consensus 300 SATl~~~v 307 (308)
|||+|+++
T Consensus 209 SAT~~~~~ 216 (236)
T 2pl3_A 209 SATQTKSV 216 (236)
T ss_dssp ESSCCHHH
T ss_pred EeeCCHHH
Confidence 99999764
No 13
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.8e-38 Score=270.95 Aligned_cols=188 Identities=40% Similarity=0.637 Sum_probs=168.3
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSR 141 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~ 141 (308)
+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~------------- 68 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE------------- 68 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------------
Confidence 6999999999999999999999999999999999999999999999999999999999988753211
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecC
Q psy12758 142 KKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGG 221 (308)
Q Consensus 142 ~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 221 (308)
....++++|++||++|+.|+++.++.+... +++..++||
T Consensus 69 ---------------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~ 107 (207)
T 2gxq_A 69 ---------------------------------------RGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGG 107 (207)
T ss_dssp ---------------------------------------TTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSS
T ss_pred ---------------------------------------cCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECC
Confidence 112277999999999999999999998755 678889999
Q ss_pred CchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 222 SNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 222 ~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
.....+...+..+++|+|+||++|.+++.++.+.+.+++++|+||||++++++|...+..++..+ +.++|+++|||
T Consensus 108 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SA 183 (207)
T 2gxq_A 108 TGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSAT----PPSRQTLLFSA 183 (207)
T ss_dssp SCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTS----CTTSEEEEECS
T ss_pred CChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhC----CccCeEEEEEE
Confidence 98888777777789999999999999999888889999999999999999999999999999876 45789999999
Q ss_pred cCCCCC
Q psy12758 302 TFPKEI 307 (308)
Q Consensus 302 Tl~~~v 307 (308)
|+|+++
T Consensus 184 T~~~~~ 189 (207)
T 2gxq_A 184 TLPSWA 189 (207)
T ss_dssp SCCHHH
T ss_pred ecCHHH
Confidence 999754
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.8e-38 Score=273.32 Aligned_cols=187 Identities=33% Similarity=0.546 Sum_probs=162.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~------------- 80 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------------- 80 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-------------
Confidence 6799999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
..++++|++||++|+.|+++.++.+....++++..++|
T Consensus 81 ------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 118 (224)
T 1qde_A 81 ------------------------------------------KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 118 (224)
T ss_dssp ------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC
T ss_pred ------------------------------------------CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeC
Confidence 12679999999999999999999999888999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+...+.. ++|+|+||++|.+++.++...+++++++|+||||++++++|...+..++..+ +.++|+++||
T Consensus 119 ~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lS 193 (224)
T 1qde_A 119 GTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLS 193 (224)
T ss_dssp ----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEE
T ss_pred CcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEE
Confidence 9887777666654 8999999999999999888889999999999999999999999999999887 4578999999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||+|+++
T Consensus 194 AT~~~~~ 200 (224)
T 1qde_A 194 ATMPNDV 200 (224)
T ss_dssp SSCCHHH
T ss_pred eecCHHH
Confidence 9999764
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-37 Score=269.00 Aligned_cols=188 Identities=31% Similarity=0.509 Sum_probs=167.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+....
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~------------- 80 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT------------- 80 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT-------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC-------------
Confidence 4699999999999999999999999999999999999999999999999999999999998753221
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
..++++|++||++|+.|+++.++.+.... ++++..++
T Consensus 81 ------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~ 118 (220)
T 1t6n_A 81 ------------------------------------------GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFF 118 (220)
T ss_dssp ------------------------------------------TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEES
T ss_pred ------------------------------------------CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 12579999999999999999999998776 78999999
Q ss_pred cCCchhHhHHhhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCceEE
Q psy12758 220 GGSNVGDQMRDLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 220 gg~~~~~~~~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
||.....+...+.. .++|+|+||++|.+++.+..+.+.+++++|+||||++++ .+|...+..++..+ +.++|++
T Consensus 119 g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i 194 (220)
T 1t6n_A 119 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----PHEKQVM 194 (220)
T ss_dssp CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS----CSSSEEE
T ss_pred CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhC----CCcCeEE
Confidence 99988777766643 579999999999999998888899999999999999997 47888899898876 4578999
Q ss_pred EEeecCCCCC
Q psy12758 298 MFSATFPKEI 307 (308)
Q Consensus 298 ~~SATl~~~v 307 (308)
+||||+|+++
T Consensus 195 ~~SAT~~~~~ 204 (220)
T 1t6n_A 195 MFSATLSKEI 204 (220)
T ss_dssp EEESCCCTTT
T ss_pred EEEeecCHHH
Confidence 9999999876
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=275.20 Aligned_cols=190 Identities=34% Similarity=0.552 Sum_probs=162.1
Q ss_pred CCccCC----CCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCC
Q psy12758 61 PQFDDI----QMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGR 136 (308)
Q Consensus 61 ~~f~~l----~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~ 136 (308)
.+|+++ ++++.++++|.++||.+|+++|.++|+.+++|+|++++||||||||++|++|+++.+....
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------- 95 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--------- 95 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---------
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---------
Confidence 578887 8999999999999999999999999999999999999999999999999999999874321
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceE
Q psy12758 137 GYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPC 216 (308)
Q Consensus 137 ~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 216 (308)
..+++++|++||++|+.|+++.++.+....++++.
T Consensus 96 ---------------------------------------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (245)
T 3dkp_A 96 ---------------------------------------------NKGFRALIISPTRELASQIHRELIKISEGTGFRIH 130 (245)
T ss_dssp ---------------------------------------------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred ---------------------------------------------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEE
Confidence 11267999999999999999999999988888888
Q ss_pred EEecCCchhHhH-HhhcCCCeEEEECcHHHHHHHHcC--CcCCCCCceEEechhhhccc---CCCHHHHHHHHHhcCCCC
Q psy12758 217 VVYGGSNVGDQM-RDLDRGCHLLVATPGRLVDMLERG--KIGLANCRFLVLDEADRMLD---MGFEPQIRCIVQENGMPR 290 (308)
Q Consensus 217 ~~~gg~~~~~~~-~~l~~~~~IlV~TP~~L~~~l~~~--~~~l~~~~~lViDEad~ll~---~~f~~~l~~i~~~l~~~~ 290 (308)
.++|+....... .....+++|+|+||++|.+++.+. .+.+.++++|||||||++++ .+|...+..++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~--- 207 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT--- 207 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---
Confidence 887765443332 233567899999999999999876 46789999999999999998 578888988887753
Q ss_pred CCCceEEEEeecCCCCC
Q psy12758 291 TGDRQTLMFSATFPKEI 307 (308)
Q Consensus 291 ~~~~q~i~~SATl~~~v 307 (308)
..+.|+++||||+|+++
T Consensus 208 ~~~~~~~~~SAT~~~~v 224 (245)
T 3dkp_A 208 SHKVRRAMFSATFAYDV 224 (245)
T ss_dssp CTTCEEEEEESSCCHHH
T ss_pred CCCcEEEEEeccCCHHH
Confidence 34689999999999765
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7e-37 Score=287.17 Aligned_cols=209 Identities=67% Similarity=1.130 Sum_probs=178.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|..+||.+||++|.++||.++.|+|++++||||||||++|++|+++.+.......
T Consensus 15 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~---------- 84 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE---------- 84 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH----------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc----------
Confidence 5799999999999999999999999999999999999999999999999999999999999887654200
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
. ...... ..........+++||++||++|+.|+++.++.+....++++..++|
T Consensus 85 ---------------~-----~~~~~~-------~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 137 (417)
T 2i4i_A 85 ---------------A-----LRAMKE-------NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYG 137 (417)
T ss_dssp ---------------H-----HHHHHH-------CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS
T ss_pred ---------------h-----hhcccc-------ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEEC
Confidence 0 000000 0000112233789999999999999999999999988999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
|.....+.+.+..+++|+|+||++|.+++..+.+.+.++++|||||||++++++|...+..++.....+....+|++++|
T Consensus 138 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~S 217 (417)
T 2i4i_A 138 GADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 217 (417)
T ss_dssp SSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEE
T ss_pred CCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEE
Confidence 99999888888889999999999999999998888999999999999999999999999999987655544578999999
Q ss_pred ecCCCC
Q psy12758 301 ATFPKE 306 (308)
Q Consensus 301 ATl~~~ 306 (308)
||+|++
T Consensus 218 AT~~~~ 223 (417)
T 2i4i_A 218 ATFPKE 223 (417)
T ss_dssp SCCCHH
T ss_pred EeCCHH
Confidence 999865
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.1e-36 Score=280.53 Aligned_cols=188 Identities=38% Similarity=0.585 Sum_probs=172.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
..+|+++++++.++++|.+.||.+|+++|.++|+.+++|+|++++++||||||++|++|+++.+....
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~------------ 103 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV------------ 103 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc------------
Confidence 36899999999999999999999999999999999999999999999999999999999998653211
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
..+++||++||++|+.|+++.++.++...++++..++
T Consensus 104 -------------------------------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 140 (410)
T 2j0s_A 104 -------------------------------------------RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI 140 (410)
T ss_dssp -------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEEC
T ss_pred -------------------------------------------CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 1267999999999999999999999999999999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
||.....+...+..+++|+|+||++|.+++.++.+.+.++++||+||||++++++|...+..++..+ +.++|++++
T Consensus 141 g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~ 216 (410)
T 2j0s_A 141 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLI 216 (410)
T ss_dssp TTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS----CTTCEEEEE
T ss_pred CCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC----ccCceEEEE
Confidence 9999988888888889999999999999999988889999999999999999999999999998876 567899999
Q ss_pred eecCCCC
Q psy12758 300 SATFPKE 306 (308)
Q Consensus 300 SATl~~~ 306 (308)
|||+|++
T Consensus 217 SAT~~~~ 223 (410)
T 2j0s_A 217 SATLPHE 223 (410)
T ss_dssp ESCCCHH
T ss_pred EcCCCHH
Confidence 9999864
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-34 Score=267.96 Aligned_cols=188 Identities=37% Similarity=0.611 Sum_probs=169.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
..+|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+....
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~------------ 87 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL------------ 87 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc------------
Confidence 36899999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
...+++|++|+++|+.|+++.++.+....++++..++
T Consensus 88 -------------------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 124 (400)
T 1s2m_A 88 -------------------------------------------NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTT 124 (400)
T ss_dssp -------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEEC
T ss_pred -------------------------------------------CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEe
Confidence 1267999999999999999999999988899999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|+.....+...+..+++|+|+||++|.+++.+....+.+++++|+||||++.+.+|...+..++..+ +...|++++
T Consensus 125 g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~----~~~~~~i~l 200 (400)
T 1s2m_A 125 GGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL----PPTHQSLLF 200 (400)
T ss_dssp SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS----CSSCEEEEE
T ss_pred CCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC----CcCceEEEE
Confidence 9999888877788889999999999999999888889999999999999999988888888888776 457899999
Q ss_pred eecCCCC
Q psy12758 300 SATFPKE 306 (308)
Q Consensus 300 SATl~~~ 306 (308)
|||+|..
T Consensus 201 SAT~~~~ 207 (400)
T 1s2m_A 201 SATFPLT 207 (400)
T ss_dssp ESCCCHH
T ss_pred EecCCHH
Confidence 9999864
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7e-34 Score=266.29 Aligned_cols=187 Identities=39% Similarity=0.551 Sum_probs=170.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.+.||..|+++|.++|+.+++|+|++++++||||||++|++|+++.+....
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------------- 106 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL------------- 106 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-------------
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-------------
Confidence 5899999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
...+++|++||++|+.|+.+.++.++...+..+..++|
T Consensus 107 ------------------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 144 (414)
T 3eiq_A 107 ------------------------------------------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 144 (414)
T ss_dssp ------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCC
T ss_pred ------------------------------------------CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEEC
Confidence 12679999999999999999999999999999999999
Q ss_pred CCchhHhHHhhc-CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 221 GSNVGDQMRDLD-RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 221 g~~~~~~~~~l~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|.....+...+. .+++|+|+||++|.+++.++.+.+.++++||+||||++.+++|...+..++..+ +.+.|++++
T Consensus 145 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~ 220 (414)
T 3eiq_A 145 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL----NSNTQVVLL 220 (414)
T ss_dssp CTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTS----CTTCEEEEE
T ss_pred CcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhC----CCCCeEEEE
Confidence 998887777765 678999999999999999988889999999999999999999999999999887 457899999
Q ss_pred eecCCCC
Q psy12758 300 SATFPKE 306 (308)
Q Consensus 300 SATl~~~ 306 (308)
|||+|++
T Consensus 221 SAT~~~~ 227 (414)
T 3eiq_A 221 SATMPSD 227 (414)
T ss_dssp CSCCCHH
T ss_pred EEecCHH
Confidence 9999864
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.9e-34 Score=280.53 Aligned_cols=197 Identities=32% Similarity=0.487 Sum_probs=165.1
Q ss_pred CCCccCCC----CCHHHHHHHHHCCCCCCcHHHHHHHhhHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCC
Q psy12758 60 PPQFDDIQ----MTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPP 133 (308)
Q Consensus 60 ~~~f~~l~----l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~--~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~ 133 (308)
+.+|+++. |++.++++|.++||.+|||+|.++|+.++ .|+|++++||||||||++|++|+++.+......
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~---- 91 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---- 91 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc----
Confidence 34666664 99999999999999999999999999999 789999999999999999999999998765321
Q ss_pred CCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhc---
Q psy12758 134 AGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYR--- 210 (308)
Q Consensus 134 ~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~--- 210 (308)
....+++||++||++|+.|+++.++.+...
T Consensus 92 -----------------------------------------------~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~ 124 (579)
T 3sqw_A 92 -----------------------------------------------SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG 124 (579)
T ss_dssp -----------------------------------------------STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGG
T ss_pred -----------------------------------------------ccCCCeEEEEcchHHHHHHHHHHHHHHHhhccc
Confidence 111267899999999999999999988642
Q ss_pred -CCCceEEEecCCchhHhHHhhc-CCCeEEEECcHHHHHHHHcC-CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcC
Q psy12758 211 -SQLRPCVVYGGSNVGDQMRDLD-RGCHLLVATPGRLVDMLERG-KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENG 287 (308)
Q Consensus 211 -~~~~~~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~~l~~~-~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~ 287 (308)
..+.+..++||.....+...+. .+++|+|+||++|.+++.+. ...++.+++|||||||+|++++|.+.++.|+..+.
T Consensus 125 ~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~ 204 (579)
T 3sqw_A 125 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 204 (579)
T ss_dssp GTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHH
T ss_pred ccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhh
Confidence 3567888999998888777764 47999999999999998765 34578999999999999999999999999987652
Q ss_pred ---CCCCCCceEEEEeecCCCCC
Q psy12758 288 ---MPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 288 ---~~~~~~~q~i~~SATl~~~v 307 (308)
.....++|+++||||+|+.+
T Consensus 205 ~~~~~~~~~~~~l~~SAT~~~~v 227 (579)
T 3sqw_A 205 EKNSKSADNIKTLLFSATLDDKV 227 (579)
T ss_dssp HHCSSCTTCCEEEEEESSCCTHH
T ss_pred hhhcccccCceEEEEeccCChHH
Confidence 22234789999999999753
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-33 Score=261.96 Aligned_cols=186 Identities=33% Similarity=0.544 Sum_probs=168.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|...||.+|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~------------- 87 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------------- 87 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-------------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-------------
Confidence 5799999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
..+++||++|+++|+.|+++.++.+....++++..++|
T Consensus 88 ------------------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g 125 (394)
T 1fuu_A 88 ------------------------------------------KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 125 (394)
T ss_dssp ------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECS
T ss_pred ------------------------------------------CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeC
Confidence 12679999999999999999999999888999999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+.....+...+. +++|+|+||++|.+.+.++.+.+.+++++|+||||++.+++|...+..++..+ +...|++++|
T Consensus 126 ~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~S 200 (394)
T 1fuu_A 126 GTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLS 200 (394)
T ss_dssp SCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEC
T ss_pred CCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEE
Confidence 988776665554 68999999999999999888888999999999999999999999999999887 4578999999
Q ss_pred ecCCCC
Q psy12758 301 ATFPKE 306 (308)
Q Consensus 301 ATl~~~ 306 (308)
||++++
T Consensus 201 AT~~~~ 206 (394)
T 1fuu_A 201 ATMPND 206 (394)
T ss_dssp SSCCHH
T ss_pred EecCHH
Confidence 999864
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.9e-33 Score=261.40 Aligned_cols=188 Identities=31% Similarity=0.502 Sum_probs=165.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.+|+++++++.++++|.++||.+|+++|.++++.++.|+|+++++|||+|||++|++|++..+....
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~------------- 74 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT------------- 74 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT-------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC-------------
Confidence 4699999999999999999999999999999999999999999999999999999999998753221
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEEEe
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCVVY 219 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~ 219 (308)
..+++||++||++|+.|+.+.++.+.... ++++..++
T Consensus 75 ------------------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 112 (391)
T 1xti_A 75 ------------------------------------------GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFF 112 (391)
T ss_dssp ------------------------------------------TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEEC
T ss_pred ------------------------------------------CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 12679999999999999999999998776 78999999
Q ss_pred cCCchhHhHHhhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccC-CCHHHHHHHHHhcCCCCCCCceEE
Q psy12758 220 GGSNVGDQMRDLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM-GFEPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 220 gg~~~~~~~~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~-~f~~~l~~i~~~l~~~~~~~~q~i 297 (308)
||.....+...+.. .++|+|+||++|..++.+..+.+.+++++|+||||++.++ +|...+..++... +..+|++
T Consensus 113 g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~----~~~~~~i 188 (391)
T 1xti_A 113 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT----PHEKQVM 188 (391)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTS----CSSSEEE
T ss_pred CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhC----CCCceEE
Confidence 99988777666643 4799999999999999988888999999999999999884 6778888888765 4578999
Q ss_pred EEeecCCCCC
Q psy12758 298 MFSATFPKEI 307 (308)
Q Consensus 298 ~~SATl~~~v 307 (308)
++|||+++++
T Consensus 189 ~~SAT~~~~~ 198 (391)
T 1xti_A 189 MFSATLSKEI 198 (391)
T ss_dssp EEESSCCSTH
T ss_pred EEEeeCCHHH
Confidence 9999998763
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.1e-33 Score=254.84 Aligned_cols=185 Identities=36% Similarity=0.672 Sum_probs=167.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
.+|+++++++.++++|.++||.+|+++|.++++.+++| +++++.+|||+|||++|++|++..+....
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~------------ 73 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN------------ 73 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS------------
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC------------
Confidence 57999999999999999999999999999999999998 79999999999999999999988653321
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.++++|++|+++|+.|+.+.++.+....++++..++
T Consensus 74 --------------------------------------------~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 109 (367)
T 1hv8_A 74 --------------------------------------------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIY 109 (367)
T ss_dssp --------------------------------------------SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEEC
T ss_pred --------------------------------------------CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 267999999999999999999999988889999999
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
||.....+...+. .++|+|+||++|.+++.++...+.+++++|+||||++.+++|...+..++..+ ....|++++
T Consensus 110 ~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~ 184 (367)
T 1hv8_A 110 GGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC----NKDKRILLF 184 (367)
T ss_dssp TTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS----CSSCEEEEE
T ss_pred CCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC----CCCceEEEE
Confidence 9998877766665 68999999999999999888889999999999999999999999999998876 457899999
Q ss_pred eecCCCC
Q psy12758 300 SATFPKE 306 (308)
Q Consensus 300 SATl~~~ 306 (308)
|||++++
T Consensus 185 SAT~~~~ 191 (367)
T 1hv8_A 185 SATMPRE 191 (367)
T ss_dssp CSSCCHH
T ss_pred eeccCHH
Confidence 9999864
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.8e-33 Score=274.70 Aligned_cols=196 Identities=32% Similarity=0.488 Sum_probs=163.6
Q ss_pred CCccCCC----CCHHHHHHHHHCCCCCCcHHHHHHHhhHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q psy12758 61 PQFDDIQ----MTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPA 134 (308)
Q Consensus 61 ~~f~~l~----l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~--~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~ 134 (308)
.+|+++. |++.++++|.++||.+|||+|.++|+.++ .|+|++++||||||||++|++|+++.+......
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----- 142 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----- 142 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-----
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-----
Confidence 4566664 99999999999999999999999999999 678999999999999999999999998766421
Q ss_pred CCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhc----
Q psy12758 135 GRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYR---- 210 (308)
Q Consensus 135 ~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~---- 210 (308)
....+++||++||++|+.|+++.++.+...
T Consensus 143 ----------------------------------------------~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~ 176 (563)
T 3i5x_A 143 ----------------------------------------------SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGL 176 (563)
T ss_dssp ----------------------------------------------STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred ----------------------------------------------ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcccc
Confidence 111267899999999999999999987543
Q ss_pred CCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcC-CcCCCCCceEEechhhhcccCCCHHHHHHHHHhcC-
Q psy12758 211 SQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERG-KIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENG- 287 (308)
Q Consensus 211 ~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~-~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~- 287 (308)
....+..++||.....+...+ ..+++|+|+||++|.+++.+. ...++.+++|||||||+|++++|.+.++.|+..+.
T Consensus 177 ~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~ 256 (563)
T 3i5x_A 177 KKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 256 (563)
T ss_dssp TTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHH
T ss_pred CceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhh
Confidence 246688889999887777766 457999999999999998765 34578999999999999999999999999877652
Q ss_pred --CCCCCCceEEEEeecCCCCC
Q psy12758 288 --MPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 288 --~~~~~~~q~i~~SATl~~~v 307 (308)
.....++|+++||||+|+.+
T Consensus 257 ~~~~~~~~~~~l~~SAT~~~~v 278 (563)
T 3i5x_A 257 KNSKSADNIKTLLFSATLDDKV 278 (563)
T ss_dssp HCSSCTTCCEEEEEESSCCTHH
T ss_pred ccccCccCceEEEEEccCCHHH
Confidence 22234789999999999753
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.2e-32 Score=255.79 Aligned_cols=184 Identities=29% Similarity=0.518 Sum_probs=161.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~ 137 (308)
..+|+++++++.++++|.++||.+|+++|.++++.++++ +|+++++|||+|||++|++|++..+....
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---------- 73 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---------- 73 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----------
Confidence 358999999999999999999999999999999999998 99999999999999999999998764321
Q ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEE
Q psy12758 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV 217 (308)
Q Consensus 138 ~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~ 217 (308)
..+++||++||++|+.|+++.++.++...++.+..
T Consensus 74 ---------------------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 108 (395)
T 3pey_A 74 ---------------------------------------------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQL 108 (395)
T ss_dssp ---------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred ---------------------------------------------CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEE
Confidence 12679999999999999999999999888888888
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCceE
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQT 296 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q~ 296 (308)
.+++...... ..+++|+|+||++|.+++.+....+.+++++|+||||++.+ .++...+..+...+ +.+.|+
T Consensus 109 ~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~----~~~~~~ 180 (395)
T 3pey_A 109 IVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL----PKDTQL 180 (395)
T ss_dssp ESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS----CTTCEE
T ss_pred EecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhC----CCCcEE
Confidence 8877543322 33689999999999999998888899999999999999998 67888888888876 457899
Q ss_pred EEEeecCCCC
Q psy12758 297 LMFSATFPKE 306 (308)
Q Consensus 297 i~~SATl~~~ 306 (308)
+++|||+++.
T Consensus 181 i~~SAT~~~~ 190 (395)
T 3pey_A 181 VLFSATFADA 190 (395)
T ss_dssp EEEESCCCHH
T ss_pred EEEEecCCHH
Confidence 9999999864
No 27
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.4e-33 Score=265.34 Aligned_cols=185 Identities=26% Similarity=0.452 Sum_probs=157.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
.+|++++|++.++++|.++||.+||++|.++||.+++| +|++++|+||||||++|++|+++.+....
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~----------- 160 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----------- 160 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-----------
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-----------
Confidence 48999999999999999999999999999999999987 99999999999999999999997653321
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCV 217 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~ 217 (308)
..+++||++||++|+.|+++.++.+.... ++.+..
T Consensus 161 --------------------------------------------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~ 196 (479)
T 3fmp_B 161 --------------------------------------------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (479)
T ss_dssp --------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEE
T ss_pred --------------------------------------------CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 12679999999999999999999988764 577777
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCce
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQ 295 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q 295 (308)
.+++....... ..+++|+|+||++|.+++.+ +.+.+.++++|||||||++++ .+|...+..+...+ +.++|
T Consensus 197 ~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~----~~~~~ 269 (479)
T 3fmp_B 197 AVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQ 269 (479)
T ss_dssp ESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS----CTTSE
T ss_pred EeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC----Cccce
Confidence 77776544322 34679999999999999966 456789999999999999997 67888888888776 45799
Q ss_pred EEEEeecCCCCC
Q psy12758 296 TLMFSATFPKEI 307 (308)
Q Consensus 296 ~i~~SATl~~~v 307 (308)
+++||||++.++
T Consensus 270 ~i~~SAT~~~~~ 281 (479)
T 3fmp_B 270 MLLFSATFEDSV 281 (479)
T ss_dssp EEEEESCCCHHH
T ss_pred EEEEeCCCCHHH
Confidence 999999998753
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-32 Score=254.70 Aligned_cols=184 Identities=27% Similarity=0.449 Sum_probs=158.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
.+|+++++++.++++|.++||..|+++|.++|+.++++ +|++++||||+|||++|++|+++.+....
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----------- 93 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----------- 93 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----------
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-----------
Confidence 57999999999999999999999999999999999997 99999999999999999999998764322
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcC-CCceEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRS-QLRPCV 217 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~ 217 (308)
..++++|++||++|+.|+++.++.+.... ++.+..
T Consensus 94 --------------------------------------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 129 (412)
T 3fht_A 94 --------------------------------------------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 129 (412)
T ss_dssp --------------------------------------------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred --------------------------------------------CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEE
Confidence 12679999999999999999999988764 677777
Q ss_pred EecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc-CCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCce
Q psy12758 218 VYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQ 295 (308)
Q Consensus 218 ~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q 295 (308)
..|+....... ..+++|+|+||++|.+++.+ +.+.+.++++|||||||++++ .+|...+..+...+ +.+.|
T Consensus 130 ~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~----~~~~~ 202 (412)
T 3fht_A 130 AVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQ 202 (412)
T ss_dssp ECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS----CTTCE
T ss_pred eecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC----CCCce
Confidence 77776654332 34679999999999999866 557788999999999999997 68888888888876 45789
Q ss_pred EEEEeecCCCC
Q psy12758 296 TLMFSATFPKE 306 (308)
Q Consensus 296 ~i~~SATl~~~ 306 (308)
++++|||++++
T Consensus 203 ~i~~SAT~~~~ 213 (412)
T 3fht_A 203 MLLFSATFEDS 213 (412)
T ss_dssp EEEEESCCCHH
T ss_pred EEEEEeecCHH
Confidence 99999999864
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=1.5e-31 Score=243.46 Aligned_cols=173 Identities=38% Similarity=0.624 Sum_probs=157.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccc
Q psy12758 68 MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 147 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
|++.+.++|.++||.+|+++|.++++.+++|+++++.+|||+|||++|++|+++. .
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~-------------------- 56 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----G-------------------- 56 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----T--------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----c--------------------
Confidence 5789999999999999999999999999999999999999999999999998763 1
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQ 227 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 227 (308)
.+++|++|+++|+.|+++.++.+....+.++..++|+.....+
T Consensus 57 -------------------------------------~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (337)
T 2z0m_A 57 -------------------------------------MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQ 99 (337)
T ss_dssp -------------------------------------CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHH
T ss_pred -------------------------------------CCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHH
Confidence 5689999999999999999999998889999999999988777
Q ss_pred HHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 228 MRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 228 ~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
...+.. ++|+|+||++|.+++.+..+.+.+++++|+||||++.+++|...+..++..+ +...|++++|||+|++
T Consensus 100 ~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~----~~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 100 INRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQT----SNRKITGLFSATIPEE 173 (337)
T ss_dssp HHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC----TTCSEEEEEESCCCHH
T ss_pred HhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhC----CcccEEEEEeCcCCHH
Confidence 666654 8999999999999998888888999999999999999999999999999886 4578999999999865
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=5.5e-30 Score=240.84 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=144.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccc
Q psy12758 71 IITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGL 149 (308)
Q Consensus 71 ~l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (308)
.+.+.+++ .|| +||++|.++|+.+++|+|++++||||||||++|++|++..+..
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~------------------------ 63 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK------------------------ 63 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC------------------------
Confidence 34555655 466 8999999999999999999999999999999999998876511
Q ss_pred ccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCch---hH
Q psy12758 150 VLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNV---GD 226 (308)
Q Consensus 150 i~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~---~~ 226 (308)
+++++|++||++|+.|+++.++.++. .++++..++||... ..
T Consensus 64 ----------------------------------~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~ 108 (414)
T 3oiy_A 64 ----------------------------------GKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEK 108 (414)
T ss_dssp ----------------------------------TCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHH
T ss_pred ----------------------------------CCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHH
Confidence 16799999999999999999999888 88999999999988 55
Q ss_pred hHHhhcCC-CeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcc----------c-CCCHHH-HHHHHHhcC------
Q psy12758 227 QMRDLDRG-CHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRML----------D-MGFEPQ-IRCIVQENG------ 287 (308)
Q Consensus 227 ~~~~l~~~-~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll----------~-~~f~~~-l~~i~~~l~------ 287 (308)
+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++. + ++|.+. +..++..++
T Consensus 109 ~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~ 186 (414)
T 3oiy_A 109 FEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE 186 (414)
T ss_dssp HHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhh
Confidence 56666555 99999999999988875 667899999999997554 4 788888 888887652
Q ss_pred -CCCCCCceEEEEeec-CCCCC
Q psy12758 288 -MPRTGDRQTLMFSAT-FPKEI 307 (308)
Q Consensus 288 -~~~~~~~q~i~~SAT-l~~~v 307 (308)
.+...++|++++||| .|+.+
T Consensus 187 ~l~~~~~~~~i~~SAT~~~~~~ 208 (414)
T 3oiy_A 187 RPKNLKPGILVVSSATAKPRGI 208 (414)
T ss_dssp CCTTCCCCEEEESSCCSSCCSS
T ss_pred hcccCCCceEEEEecCCCcchh
Confidence 111257899999999 67654
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=2.2e-29 Score=252.66 Aligned_cols=179 Identities=20% Similarity=0.314 Sum_probs=157.6
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
+|++++|++.+.+.+.+.||.+|+++|.++++. +.+|++++++||||||||++|.+|+++.+...+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------------- 68 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG------------- 68 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-------------
Confidence 699999999999999999999999999999998 889999999999999999999999998876432
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.+++|++|+++|+.|+++.++.+.. .++++..++|
T Consensus 69 --------------------------------------------~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G 103 (720)
T 2zj8_A 69 --------------------------------------------GKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATG 103 (720)
T ss_dssp --------------------------------------------SEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECS
T ss_pred --------------------------------------------CEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecC
Confidence 5789999999999999999976554 4788999999
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+....... ...++|+|+||++|..++.+....+++++++||||||.+.++++...++.++.+++ .+.|++++|
T Consensus 104 ~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~----~~~~ii~lS 176 (720)
T 2zj8_A 104 DYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML----GKAQIIGLS 176 (720)
T ss_dssp CSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB----TTBEEEEEE
T ss_pred CCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh----cCCeEEEEc
Confidence 77654432 23689999999999999988776688999999999999999899999999999884 378999999
Q ss_pred ecCCC
Q psy12758 301 ATFPK 305 (308)
Q Consensus 301 ATl~~ 305 (308)
||+++
T Consensus 177 ATl~n 181 (720)
T 2zj8_A 177 ATIGN 181 (720)
T ss_dssp CCCSC
T ss_pred CCcCC
Confidence 99974
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=5.8e-29 Score=249.42 Aligned_cols=180 Identities=21% Similarity=0.304 Sum_probs=156.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
+.+|++++|++.+.+.+.+.||.+|+++|.++++. +.++++++++||||||||++|.+|+++.+...+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----------- 75 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG----------- 75 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC-----------
Confidence 36899999999999999999999999999999999 788999999999999999999999998875432
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
.+++|++|+++|+.|+++.++.+. ..++++..+
T Consensus 76 ----------------------------------------------~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~ 108 (715)
T 2va8_A 76 ----------------------------------------------GKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMT 108 (715)
T ss_dssp ----------------------------------------------SEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEEC
T ss_pred ----------------------------------------------CeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEE
Confidence 578999999999999999986554 347888888
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
+|+....... + ..++|+|+||++|..++.+....++++++|||||||.+.+.++...++.++.+++ +.|+++
T Consensus 109 ~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-----~~~ii~ 180 (715)
T 2va8_A 109 SGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-----RRNLLA 180 (715)
T ss_dssp CSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-----TSEEEE
T ss_pred eCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-----cCcEEE
Confidence 8877654431 2 3689999999999999988777689999999999999998899999999998873 689999
Q ss_pred EeecCCC
Q psy12758 299 FSATFPK 305 (308)
Q Consensus 299 ~SATl~~ 305 (308)
+|||+++
T Consensus 181 lSATl~n 187 (715)
T 2va8_A 181 LSATISN 187 (715)
T ss_dssp EESCCTT
T ss_pred EcCCCCC
Confidence 9999974
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.1e-29 Score=242.17 Aligned_cols=182 Identities=27% Similarity=0.429 Sum_probs=134.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
.|...++++.++++|.+.||..|+++|.++|+.+++| ++++++++||||||++|++|++..+.....
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~----------- 188 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP----------- 188 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC-----------
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCC-----------
Confidence 4666789999999999999999999999999999998 999999999999999999999987643321
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.+++||++|+++|+.|+.+.++.+....++.....+
T Consensus 189 --------------------------------------------~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~ 224 (508)
T 3fho_A 189 --------------------------------------------KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI 224 (508)
T ss_dssp --------------------------------------------SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--
T ss_pred --------------------------------------------CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEe
Confidence 267999999999999999999999877777766666
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhccc-CCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~-~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
++...... ..+++|+|+||++|.+++.+..+.+.++++|||||||++.+ .+|...+..+...+ +.+.|+++
T Consensus 225 ~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~----~~~~~~i~ 296 (508)
T 3fho_A 225 KDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVL 296 (508)
T ss_dssp ------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHS----CTTCEEEE
T ss_pred CCcccccc----cCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhC----CcCCeEEE
Confidence 55443222 33689999999999999998888899999999999999998 68999999999887 45789999
Q ss_pred EeecCCCC
Q psy12758 299 FSATFPKE 306 (308)
Q Consensus 299 ~SATl~~~ 306 (308)
+|||+++.
T Consensus 297 lSAT~~~~ 304 (508)
T 3fho_A 297 FSATFSER 304 (508)
T ss_dssp EESCCSTH
T ss_pred EeCCCCHH
Confidence 99999864
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=2.3e-29 Score=251.88 Aligned_cols=181 Identities=18% Similarity=0.262 Sum_probs=153.2
Q ss_pred CccCCC--CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 62 QFDDIQ--MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 62 ~f~~l~--l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
+|++++ |++.+.+.+.+.||.+|+++|.++++.+.+|+|++++||||||||++|.+|++..+...
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 699999 99999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
.+++|++|+++|+.|+++.++.+. ..++++..++
T Consensus 69 ---------------------------------------------~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~ 102 (702)
T 2p6r_A 69 ---------------------------------------------GKSLYVVPLRALAGEKYESFKKWE-KIGLRIGIST 102 (702)
T ss_dssp ---------------------------------------------CCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEEC
T ss_pred ---------------------------------------------CcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEe
Confidence 568999999999999999986544 3478888888
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
|+...... ....++|+|+||++|..++.+....+++++++||||||.+.++++...++.++..+... .++.|++++
T Consensus 103 G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-~~~~~ii~l 178 (702)
T 2p6r_A 103 GDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-NKALRVIGL 178 (702)
T ss_dssp SSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH-CTTCEEEEE
T ss_pred CCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc-CcCceEEEE
Confidence 88765432 12378999999999999998877668999999999999999999999999888776322 347899999
Q ss_pred eecCCC
Q psy12758 300 SATFPK 305 (308)
Q Consensus 300 SATl~~ 305 (308)
|||+++
T Consensus 179 SATl~n 184 (702)
T 2p6r_A 179 SATAPN 184 (702)
T ss_dssp ECCCTT
T ss_pred CCCcCC
Confidence 999984
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-29 Score=258.81 Aligned_cols=175 Identities=24% Similarity=0.245 Sum_probs=155.3
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
.|+.|+.+++++.+..++...++..|+++|.++|+.+.+|+|++++|+||||||++|++|++..+...
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------ 227 (1108)
T 3l9o_A 160 LPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------ 227 (1108)
T ss_dssp CSSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT------------
T ss_pred CCCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC------------
Confidence 46789999999988888888888899999999999999999999999999999999999999876332
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
.+++|++||++|+.|+++.++.+.. .+..+
T Consensus 228 ----------------------------------------------~rvlvl~PtraLa~Q~~~~l~~~~~----~Vgll 257 (1108)
T 3l9o_A 228 ----------------------------------------------QRVIYTSPIKALSNQKYRELLAEFG----DVGLM 257 (1108)
T ss_dssp ----------------------------------------------CEEEEEESSHHHHHHHHHHHHHHTS----SEEEE
T ss_pred ----------------------------------------------CeEEEEcCcHHHHHHHHHHHHHHhC----CccEE
Confidence 5799999999999999999998765 56667
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
+|+.... .+++|+|+||++|.+++.++...+.++++|||||||+|.+++|...++.++..+ +...|+++
T Consensus 258 tGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l----~~~~qvl~ 326 (1108)
T 3l9o_A 258 TGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL----PDKVRYVF 326 (1108)
T ss_dssp CSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS----CTTSEEEE
T ss_pred eCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhc----CCCceEEE
Confidence 7877633 458999999999999999888778999999999999999999999999999987 56799999
Q ss_pred EeecCCCC
Q psy12758 299 FSATFPKE 306 (308)
Q Consensus 299 ~SATl~~~ 306 (308)
||||+|+.
T Consensus 327 lSATipn~ 334 (1108)
T 3l9o_A 327 LSATIPNA 334 (1108)
T ss_dssp EECSCSSC
T ss_pred EcCCCCCH
Confidence 99999874
No 36
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=3.4e-28 Score=252.57 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=142.4
Q ss_pred HCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 78 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
..|| +||++|.++||.+++|+|++++||||||||++|++|++..+..
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------------------------- 120 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------------------------- 120 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------------------------------
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------------------------------
Confidence 4688 6999999999999999999999999999999998888876511
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCch---hHhHHhhcCC
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNV---GDQMRDLDRG 234 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~ 234 (308)
++++||++||++|+.|+++.++.++ ..++++..++||.+. ..+...+..+
T Consensus 121 --------------------------~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g 173 (1104)
T 4ddu_A 121 --------------------------GKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEED 173 (1104)
T ss_dssp --------------------------TCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTS
T ss_pred --------------------------CCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCC
Confidence 1679999999999999999999987 778999999999987 6666777665
Q ss_pred -CeEEEECcHHHHHHHHcCCcCCCCCceEEechhh----------hccc-CCCHHH-HHHHHHhcC-------CCCCCCc
Q psy12758 235 -CHLLVATPGRLVDMLERGKIGLANCRFLVLDEAD----------RMLD-MGFEPQ-IRCIVQENG-------MPRTGDR 294 (308)
Q Consensus 235 -~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad----------~ll~-~~f~~~-l~~i~~~l~-------~~~~~~~ 294 (308)
++|+|+||++|.+++.. +.++++++||||||| +|++ +||..+ ++.++..++ .....++
T Consensus 174 ~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~ 251 (1104)
T 4ddu_A 174 DYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPG 251 (1104)
T ss_dssp CCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCC
T ss_pred CCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCc
Confidence 99999999999988875 667899999999995 4556 899888 888888763 1112578
Q ss_pred eEEEEeec-CCCCC
Q psy12758 295 QTLMFSAT-FPKEI 307 (308)
Q Consensus 295 q~i~~SAT-l~~~v 307 (308)
|+++|||| .|+.+
T Consensus 252 q~ll~SAT~~p~~~ 265 (1104)
T 4ddu_A 252 ILVVSSATAKPRGI 265 (1104)
T ss_dssp EEEEECBSSCCCSS
T ss_pred eEEEEcCCCCcHHH
Confidence 99999999 67665
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=6.8e-28 Score=233.83 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=135.7
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
++..+|+++|.++++.++.|+|+++++|||+|||++|++|+++.+.....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------------------------------ 52 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------------------------------ 52 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------------------------------
Confidence 45668999999999999999999999999999999999999998865431
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
...+++||++||++|+.|+.+.++.++...++++..++|+.....+...+..+++|+
T Consensus 53 -----------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 109 (556)
T 4a2p_A 53 -----------------------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDII 109 (556)
T ss_dssp -----------------------SCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEE
T ss_pred -----------------------cCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEE
Confidence 012679999999999999999999999888999999999998777777776779999
Q ss_pred EECcHHHHHHHHcCCc-CCCCCceEEechhhhcccCCCHHHH-HHHH-HhcCCCCCCCceEEEEeecCCC
Q psy12758 239 VATPGRLVDMLERGKI-GLANCRFLVLDEADRMLDMGFEPQI-RCIV-QENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~-~l~~~~~lViDEad~ll~~~f~~~l-~~i~-~~l~~~~~~~~q~i~~SATl~~ 305 (308)
|+||++|.+++..+.+ .+.++++|||||||++.++++...+ ..++ ..+. ......|++++|||++.
T Consensus 110 v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 110 VVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN-SASQLPQILGLTASVGV 178 (556)
T ss_dssp EECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC-C---CCEEEEEESCCCC
T ss_pred EECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc-ccCCCCeEEEEeCCccc
Confidence 9999999999998877 7899999999999999988754333 2222 2221 12346899999999854
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.95 E-value=1.6e-27 Score=230.92 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=142.5
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
.+|+++|.++++.++.|+|++++++||+|||++|++|+++.+.....
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------------------------- 49 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------------------------------- 49 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---------------------------------
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---------------------------------
Confidence 37999999999999999999999999999999999999998866431
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEEC
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~T 241 (308)
...+++||++||++|+.|+.++++.++...++++..++|+.....+...+..+++|+|+|
T Consensus 50 --------------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T 109 (555)
T 3tbk_A 50 --------------------GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILT 109 (555)
T ss_dssp --------------------SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEEC
T ss_pred --------------------CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEEC
Confidence 012679999999999999999999999988999999999998777777777789999999
Q ss_pred cHHHHHHHHcCCc-CCCCCceEEechhhhcccCCC-HHHHHHHHH-hcCCCCCCCceEEEEeecCCC
Q psy12758 242 PGRLVDMLERGKI-GLANCRFLVLDEADRMLDMGF-EPQIRCIVQ-ENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 242 P~~L~~~l~~~~~-~l~~~~~lViDEad~ll~~~f-~~~l~~i~~-~l~~~~~~~~q~i~~SATl~~ 305 (308)
|++|..++..+.+ .+.++++|||||||++.+.+. ...+...+. .+........|++++|||++.
T Consensus 110 ~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 110 PQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred HHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 9999999988877 788999999999999998753 232323333 232333356899999999864
No 39
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=2.7e-28 Score=242.04 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=138.6
Q ss_pred HCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 78 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
.+|| .||++|..++|.+++|+ |++|+||+|||++|.+|++...+..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g------------------------------- 124 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG------------------------------- 124 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------------------------
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------------------------
Confidence 5899 99999999999999999 9999999999999999998543321
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
+.++||+||++||.|+++++..++...++++.+++||.+...+ .+..+|||
T Consensus 125 ---------------------------~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dI 175 (844)
T 1tf5_A 125 ---------------------------KGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADI 175 (844)
T ss_dssp ---------------------------SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSE
T ss_pred ---------------------------CCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCE
Confidence 5699999999999999999999999999999999999876443 33457999
Q ss_pred EEECcHHH-HHHHHcC------CcCCCCCceEEechhhhcc-cCC---------------CHHHHHHHHHhcCC-----C
Q psy12758 238 LVATPGRL-VDMLERG------KIGLANCRFLVLDEADRML-DMG---------------FEPQIRCIVQENGM-----P 289 (308)
Q Consensus 238 lV~TP~~L-~~~l~~~------~~~l~~~~~lViDEad~ll-~~~---------------f~~~l~~i~~~l~~-----~ 289 (308)
+||||++| .++|... .+.++.++++||||||.|| |++ |..++..|+..++. .
T Consensus 176 v~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~v 255 (844)
T 1tf5_A 176 TYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTY 255 (844)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCC
T ss_pred EEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCccccccee
Confidence 99999999 7777654 3567899999999999998 775 67889999988732 0
Q ss_pred CCCCceEE-----------------EEeecCC
Q psy12758 290 RTGDRQTL-----------------MFSATFP 304 (308)
Q Consensus 290 ~~~~~q~i-----------------~~SATl~ 304 (308)
.+..+|++ +||||+|
T Consensus 256 d~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 256 DIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp CSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred ccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 12478998 9999976
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=3.2e-28 Score=238.62 Aligned_cols=176 Identities=19% Similarity=0.301 Sum_probs=142.2
Q ss_pred CccCCCCCHHHHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
+++++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. .
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----~------------- 84 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----D------------- 84 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----S-------------
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----C-------------
Confidence 34568999999999998 69999999999999999999999999999999999999999742 0
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
.++||++|+++|+.|..+.++.+ ++++..++|
T Consensus 85 --------------------------------------------g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~ 116 (591)
T 2v1x_A 85 --------------------------------------------GFTLVICPLISLMEDQLMVLKQL----GISATMLNA 116 (591)
T ss_dssp --------------------------------------------SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCS
T ss_pred --------------------------------------------CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeC
Confidence 56899999999999999988886 678888888
Q ss_pred CCchhHhHHh------hcCCCeEEEECcHHHH------HHHHcCCcCCCCCceEEechhhhcccCC--CHHHHHH--HHH
Q psy12758 221 GSNVGDQMRD------LDRGCHLLVATPGRLV------DMLERGKIGLANCRFLVLDEADRMLDMG--FEPQIRC--IVQ 284 (308)
Q Consensus 221 g~~~~~~~~~------l~~~~~IlV~TP~~L~------~~l~~~~~~l~~~~~lViDEad~ll~~~--f~~~l~~--i~~ 284 (308)
+......... ....++|+|+||++|. +++.+ ...+.++++|||||||++.++| |.+.+.. ++.
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~ 195 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 195 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHH
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHH
Confidence 8776544322 2457899999999874 23332 3457789999999999999988 7776654 232
Q ss_pred hcCCCCCCCceEEEEeecCCCCC
Q psy12758 285 ENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 285 ~l~~~~~~~~q~i~~SATl~~~v 307 (308)
.. .++.|+++||||+++.+
T Consensus 196 ~~----~~~~~ii~lSAT~~~~v 214 (591)
T 2v1x_A 196 RQ----FPNASLIGLTATATNHV 214 (591)
T ss_dssp HH----CTTSEEEEEESSCCHHH
T ss_pred Hh----CCCCcEEEEecCCCHHH
Confidence 22 23689999999998653
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=4.3e-27 Score=234.92 Aligned_cols=180 Identities=18% Similarity=0.175 Sum_probs=142.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q psy12758 72 ITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVL 151 (308)
Q Consensus 72 l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~ 151 (308)
+..+|..+||.+|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.....
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----------------------- 58 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----------------------- 58 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT-----------------------
T ss_pred CCCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc-----------------------
Confidence 346788899999999999999999999999999999999999999999988765431
Q ss_pred ccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh
Q psy12758 152 APTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL 231 (308)
Q Consensus 152 ~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 231 (308)
....++||++||++|+.|+.+++++++...++++..++||.....+...+
T Consensus 59 ------------------------------~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 108 (696)
T 2ykg_A 59 ------------------------------GQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI 108 (696)
T ss_dssp ------------------------------TCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH
T ss_pred ------------------------------CCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh
Confidence 01156899999999999999999999988899999999998776666666
Q ss_pred cCCCeEEEECcHHHHHHHHcCCc-CCCCCceEEechhhhcccCC-CHHHHHHHHH-hcCCCCCCCceEEEEeecCC
Q psy12758 232 DRGCHLLVATPGRLVDMLERGKI-GLANCRFLVLDEADRMLDMG-FEPQIRCIVQ-ENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 232 ~~~~~IlV~TP~~L~~~l~~~~~-~l~~~~~lViDEad~ll~~~-f~~~l~~i~~-~l~~~~~~~~q~i~~SATl~ 304 (308)
..+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.. +...+...+. .+........|++++|||..
T Consensus 109 ~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 109 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred ccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 66899999999999999998876 78999999999999998664 2222222222 22222245689999999986
No 42
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=202.13 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=124.6
Q ss_pred HHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 76 IALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
........|+++|.++++.+++++++++.+|||+|||++|+++++..+.....
T Consensus 26 ~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--------------------------- 78 (216)
T 3b6e_A 26 ASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--------------------------- 78 (216)
T ss_dssp TCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred cCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc---------------------------
Confidence 33445669999999999999999999999999999999999999887654310
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHH-HHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCC
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQ-IYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRG 234 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~q-i~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~ 234 (308)
.....+++|++|+++|+.| +.+.++.+... ++++..++|+.........+..+
T Consensus 79 -------------------------~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~ 132 (216)
T 3b6e_A 79 -------------------------ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKS 132 (216)
T ss_dssp -------------------------TTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHH
T ss_pred -------------------------ccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccC
Confidence 0112678999999999999 77788887655 67888888887766555555557
Q ss_pred CeEEEECcHHHHHHHHcCC------cCCCCCceEEechhhhcccCCCHHHHH-HHHHhc---------CCCCCCCceEEE
Q psy12758 235 CHLLVATPGRLVDMLERGK------IGLANCRFLVLDEADRMLDMGFEPQIR-CIVQEN---------GMPRTGDRQTLM 298 (308)
Q Consensus 235 ~~IlV~TP~~L~~~l~~~~------~~l~~~~~lViDEad~ll~~~f~~~l~-~i~~~l---------~~~~~~~~q~i~ 298 (308)
++|+|+||++|..++.+.. ..+.++++|||||||++.+.++...+. .++... ..+..+..++++
T Consensus 133 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (216)
T 3b6e_A 133 CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILG 212 (216)
T ss_dssp CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE
T ss_pred CCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEE
Confidence 8999999999999987753 557889999999999999877666543 332211 111224689999
Q ss_pred Eeec
Q psy12758 299 FSAT 302 (308)
Q Consensus 299 ~SAT 302 (308)
+|||
T Consensus 213 lSAT 216 (216)
T 3b6e_A 213 LTAS 216 (216)
T ss_dssp EECC
T ss_pred eecC
Confidence 9998
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=6.8e-28 Score=233.43 Aligned_cols=175 Identities=21% Similarity=0.260 Sum_probs=140.9
Q ss_pred CccCCCCCHHHHHHHHH-CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 62 QFDDIQMTEIITNNIAL-ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~-~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
+|++++|++.+.+.|++ .||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++.. .
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~-------------- 65 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N-------------- 65 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S--------------
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C--------------
Confidence 69999999999999998 89999999999999999999999999999999999999998742 1
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
..+||++|+++|+.|+.+.++.+ ++.+..+++
T Consensus 66 --------------------------------------------g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~ 97 (523)
T 1oyw_A 66 --------------------------------------------GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNS 97 (523)
T ss_dssp --------------------------------------------SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECT
T ss_pred --------------------------------------------CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeC
Confidence 45789999999999988888775 577788888
Q ss_pred CCchhHhHH---hh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCC--CHHHHHHH---HHhcCCCCC
Q psy12758 221 GSNVGDQMR---DL-DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMG--FEPQIRCI---VQENGMPRT 291 (308)
Q Consensus 221 g~~~~~~~~---~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~--f~~~l~~i---~~~l~~~~~ 291 (308)
+........ .+ ...++|+|+||++|........+...++++|||||||++.++| |...+..+ ...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~----- 172 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF----- 172 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-----
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-----
Confidence 776554432 22 4568999999999963222222335788999999999999987 66665544 3332
Q ss_pred CCceEEEEeecCCCC
Q psy12758 292 GDRQTLMFSATFPKE 306 (308)
Q Consensus 292 ~~~q~i~~SATl~~~ 306 (308)
++.+++++|||.++.
T Consensus 173 ~~~~~i~lSAT~~~~ 187 (523)
T 1oyw_A 173 PTLPFMALTATADDT 187 (523)
T ss_dssp TTSCEEEEESCCCHH
T ss_pred CCCCEEEEeCCCCHH
Confidence 358899999999864
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=1.3e-26 Score=234.97 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=136.9
Q ss_pred HCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 78 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
..|+..|+++|.++|+.++.|+|++++++||+|||++|++|+++.+.....
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----------------------------- 293 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----------------------------- 293 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-----------------------------
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-----------------------------
Confidence 468999999999999999999999999999999999999999998865421
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
...+++||++||++|+.|+.+.++.++...++++..++|+.....+...+..+++|
T Consensus 294 ------------------------~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~I 349 (797)
T 4a2q_A 294 ------------------------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDI 349 (797)
T ss_dssp ------------------------SCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSE
T ss_pred ------------------------cCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCE
Confidence 01267999999999999999999999988899999999999887777777778999
Q ss_pred EEECcHHHHHHHHcCCc-CCCCCceEEechhhhcccCCCHHH-HHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 238 LVATPGRLVDMLERGKI-GLANCRFLVLDEADRMLDMGFEPQ-IRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 238 lV~TP~~L~~~l~~~~~-~l~~~~~lViDEad~ll~~~f~~~-l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+|+||++|.+++.++.+ .+.++++|||||||++.+.+.... +..++...........|++++|||.+
T Consensus 350 vv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 350 IVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 99999999999998777 788999999999999988753332 22333221111234689999999985
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=5.1e-27 Score=243.43 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=140.9
Q ss_pred HHH-HHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccc
Q psy12758 74 NNI-ALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLA 152 (308)
Q Consensus 74 ~~L-~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (308)
+.+ ..+||. | ++|.++||.+++|+|++++||||||||+ |.+|++..+...+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~------------------------- 99 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKG------------------------- 99 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTS-------------------------
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcC-------------------------
Confidence 444 358999 9 9999999999999999999999999998 9999998775432
Q ss_pred cchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCC----ceEEEecCCchhHh-
Q psy12758 153 PTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQL----RPCVVYGGSNVGDQ- 227 (308)
Q Consensus 153 pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~----~~~~~~gg~~~~~~- 227 (308)
+++||++||++|+.|+++.++.++...++ ++..++||.....+
T Consensus 100 --------------------------------~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~ 147 (1054)
T 1gku_B 100 --------------------------------KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKE 147 (1054)
T ss_dssp --------------------------------CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHH
T ss_pred --------------------------------CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHH
Confidence 67999999999999999999999988888 88999999987663
Q ss_pred --HHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCC-------CCCCceEEE
Q psy12758 228 --MRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMP-------RTGDRQTLM 298 (308)
Q Consensus 228 --~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~-------~~~~~q~i~ 298 (308)
...+.+ ++|+|+||++|.+++.+ ++++++|||||||+|++ |...++.++..++.. .+..+|+++
T Consensus 148 ~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l 220 (1054)
T 1gku_B 148 NFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCL 220 (1054)
T ss_dssp HHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEE
T ss_pred HHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEE
Confidence 444555 99999999999998765 67999999999999999 568888888876421 124679999
Q ss_pred EeecCCCC
Q psy12758 299 FSATFPKE 306 (308)
Q Consensus 299 ~SATl~~~ 306 (308)
||||++..
T Consensus 221 ~SAT~t~~ 228 (1054)
T 1gku_B 221 MVSTATAK 228 (1054)
T ss_dssp EECCCCSC
T ss_pred EEecCCCc
Confidence 99999875
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.94 E-value=5.7e-27 Score=232.15 Aligned_cols=146 Identities=16% Similarity=0.095 Sum_probs=115.8
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
+|. .|+++|..++|.++.|+ |+.++||||||++|++|++...+..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------------------------- 115 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------------------------- 115 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS--------------------------------
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC--------------------------------
Confidence 564 99999999999999998 9999999999999999998654321
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
+.++|++|||+||.|+++++..++...++++.+++||.+.. .+.+..++||+
T Consensus 116 --------------------------~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIv 167 (853)
T 2fsf_A 116 --------------------------KGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAYAADIT 167 (853)
T ss_dssp --------------------------SCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEE
T ss_pred --------------------------CcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEE
Confidence 56999999999999999999999999999999999998754 34445579999
Q ss_pred EECcHHH-HHHHHcCC------cCCCCCceEEechhhhcc-cCC---------------CHHHHHHHHHhcC
Q psy12758 239 VATPGRL-VDMLERGK------IGLANCRFLVLDEADRML-DMG---------------FEPQIRCIVQENG 287 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~~~~~lViDEad~ll-~~~---------------f~~~l~~i~~~l~ 287 (308)
||||++| .++|..+. ..+++++++||||||.|| |++ |...+..|+..++
T Consensus 168 vgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 168 YGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp EEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------------------
T ss_pred EECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 9999999 78887653 567899999999999999 553 6678888888874
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=1e-26 Score=230.84 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=139.6
Q ss_pred HCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 78 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 78 ~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
.+|+ .||++|..++|.++.|+ |++++||+|||++|.+|++...+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g------------------------------- 152 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG------------------------------- 152 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-------------------------------
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-------------------------------
Confidence 4798 99999999999999998 9999999999999999997654322
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
..++|++||++||.|+++++..+....++++.+++||.+... +.+..+|||
T Consensus 153 ---------------------------~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DI 203 (922)
T 1nkt_A 153 ---------------------------NGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDE--RRVAYNADI 203 (922)
T ss_dssp ---------------------------SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSE
T ss_pred ---------------------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCE
Confidence 459999999999999999999999999999999999987543 334447999
Q ss_pred EEECcHHH-HHHHHcC------CcCCCCCceEEechhhhcc-cC---------------CCHHHHHHHHHhcCCC-----
Q psy12758 238 LVATPGRL-VDMLERG------KIGLANCRFLVLDEADRML-DM---------------GFEPQIRCIVQENGMP----- 289 (308)
Q Consensus 238 lV~TP~~L-~~~l~~~------~~~l~~~~~lViDEad~ll-~~---------------~f~~~l~~i~~~l~~~----- 289 (308)
+||||++| .++|..+ .+.++.+.++||||||.|| |+ +|...+..|+..++..
T Consensus 204 vygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~v 283 (922)
T 1nkt_A 204 TYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEV 283 (922)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEE
T ss_pred EEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCccccccee
Confidence 99999999 8888765 3567899999999999999 43 5888999999998310
Q ss_pred CCCCceEE-----------------EEeecCCC
Q psy12758 290 RTGDRQTL-----------------MFSATFPK 305 (308)
Q Consensus 290 ~~~~~q~i-----------------~~SATl~~ 305 (308)
.++.+|++ +||||+|.
T Consensus 284 Dek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 284 DLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp ETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred ccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 01578999 99999874
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-25 Score=230.97 Aligned_cols=156 Identities=22% Similarity=0.235 Sum_probs=136.3
Q ss_pred HHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 77 ALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 77 ~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
...+|. |+++|.++++.+.+|++++++||||||||++|.+|++..+...
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g------------------------------ 129 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------------------------ 129 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT------------------------------
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC------------------------------
Confidence 445775 9999999999999999999999999999999999998876322
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCe
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 236 (308)
.+++|++||++|+.|+++.+..+.. ++..++|+.... ..++
T Consensus 130 ----------------------------~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~ 170 (1010)
T 2xgj_A 130 ----------------------------QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAG 170 (1010)
T ss_dssp ----------------------------CEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCS
T ss_pred ----------------------------CeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCC
Confidence 5799999999999999999988765 566778877643 2579
Q ss_pred EEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 237 LLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 237 IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
|+|+||++|.+++.++...+.++++|||||||+|.+++++..++.++..+ +.+.|++++|||+|+.
T Consensus 171 IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l----~~~~~il~LSATi~n~ 236 (1010)
T 2xgj_A 171 CLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL----PDKVRYVFLSATIPNA 236 (1010)
T ss_dssp EEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS----CTTCEEEEEECCCTTH
T ss_pred EEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc----CCCCeEEEEcCCCCCH
Confidence 99999999999998888888999999999999999999999999999887 4678999999999863
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=8.9e-26 Score=232.03 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=134.7
Q ss_pred HHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccch
Q psy12758 76 IALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTR 155 (308)
Q Consensus 76 L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~ 155 (308)
..-.|+.+|+++|.++|+.++.|+|++++++||+|||++|++|+++.+.....
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------------------------- 293 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------------------- 293 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---------------------------
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---------------------------
Confidence 34457899999999999999999999999999999999999999887644321
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCC
Q psy12758 156 ELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGC 235 (308)
Q Consensus 156 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 235 (308)
....++||++||++|+.|++++++.++...++++..++|+.....+...+..++
T Consensus 294 --------------------------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 347 (936)
T 4a2w_A 294 --------------------------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS 347 (936)
T ss_dssp --------------------------SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHC
T ss_pred --------------------------cCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCC
Confidence 012679999999999999999999999888999999999998777666666679
Q ss_pred eEEEECcHHHHHHHHcCCc-CCCCCceEEechhhhcccCCC-HHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 236 HLLVATPGRLVDMLERGKI-GLANCRFLVLDEADRMLDMGF-EPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~~~~-~l~~~~~lViDEad~ll~~~f-~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+|+|+||++|.+++.++.+ .+.++++|||||||++...+. ...+..++...........|++++|||.+
T Consensus 348 ~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred CEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 9999999999999998776 788999999999999988753 22233333321111234689999999985
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1.5e-25 Score=240.48 Aligned_cols=178 Identities=17% Similarity=0.243 Sum_probs=144.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccc
Q psy12758 68 MTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFP 146 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (308)
|.....++|...+|.+++|+|.++++.++.+ +|++++||||||||++|.+|+++.+.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~------------------ 972 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE------------------ 972 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC------------------
Confidence 4567788888889999999999999999765 789999999999999999999998876532
Q ss_pred cccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHH-hhhcCCCceEEEecCCchh
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKK-FAYRSQLRPCVVYGGSNVG 225 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~~~~~~~gg~~~~ 225 (308)
.+++|++|+++|+.|+++.++. ++...++++..++|+....
T Consensus 973 --------------------------------------~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~ 1014 (1724)
T 4f92_B 973 --------------------------------------GRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014 (1724)
T ss_dssp --------------------------------------CCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH
T ss_pred --------------------------------------CEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcc
Confidence 5689999999999999999875 5566789999988887644
Q ss_pred HhHHhhcCCCeEEEECcHHHHHHHHcCC--cCCCCCceEEechhhhcccCCCHHHHHHHHHhcC---CCCCCCceEEEEe
Q psy12758 226 DQMRDLDRGCHLLVATPGRLVDMLERGK--IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENG---MPRTGDRQTLMFS 300 (308)
Q Consensus 226 ~~~~~l~~~~~IlV~TP~~L~~~l~~~~--~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~---~~~~~~~q~i~~S 300 (308)
... ..+++|+|+||++|..++++.. ..++++++||+||+|.+.+ .++..++.++.++. ...+.+.|+|++|
T Consensus 1015 ~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lS 1090 (1724)
T 4f92_B 1015 LKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALS 1090 (1724)
T ss_dssp HHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEE
T ss_pred hhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 332 2357999999999988887643 3378999999999998876 46777777665442 1224578999999
Q ss_pred ecCCC
Q psy12758 301 ATFPK 305 (308)
Q Consensus 301 ATl~~ 305 (308)
||+|+
T Consensus 1091 ATl~N 1095 (1724)
T 4f92_B 1091 SSLSN 1095 (1724)
T ss_dssp SCBTT
T ss_pred CCCCC
Confidence 99985
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.1e-25 Score=193.30 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=124.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccc
Q psy12758 69 TEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLG 148 (308)
Q Consensus 69 ~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (308)
++.+.+.+...+...++++|.++++.+.+|++++++|+||||||++|.++++..+.....
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------------------- 106 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------------------- 106 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------------------
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------------------
Confidence 333333333334456799999999999999999999999999999999999887655421
Q ss_pred cccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhh-cCCCceEEEecCCchhHh
Q psy12758 149 LVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAY-RSQLRPCVVYGGSNVGDQ 227 (308)
Q Consensus 149 li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~ 227 (308)
....+++++.|+++++.|+.+.+..... ..+..+..- ....
T Consensus 107 ---------------------------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~-----~~~~ 148 (235)
T 3llm_A 107 ---------------------------------AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYS-----VRFE 148 (235)
T ss_dssp ---------------------------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEE-----ETTE
T ss_pred ---------------------------------CCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEe-----echh
Confidence 0115678888899988888777755432 222222211 1111
Q ss_pred HHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhc-ccCCCH-HHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 228 MRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRM-LDMGFE-PQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 228 ~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~l-l~~~f~-~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
......+++|+|+|||+|.+++.. .++++++|||||||.+ ++.+|. ..++.++... ++.|+++||||++.
T Consensus 149 ~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-----~~~~~il~SAT~~~ 220 (235)
T 3llm_A 149 SILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-----PEVRIVLMSATIDT 220 (235)
T ss_dssp EECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-----TTSEEEEEECSSCC
T ss_pred hccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-----CCCeEEEEecCCCH
Confidence 111124689999999999999877 3899999999999997 787776 4667777663 36899999999986
Q ss_pred C
Q psy12758 306 E 306 (308)
Q Consensus 306 ~ 306 (308)
+
T Consensus 221 ~ 221 (235)
T 3llm_A 221 S 221 (235)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=2.3e-25 Score=229.52 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=134.3
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.+| .|+++|.++|+.+++|+|++++||||||||++|++|+...+...
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------------------------- 82 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------------------------- 82 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT--------------------------------
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC--------------------------------
Confidence 455 48999999999999999999999999999999999988754321
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
.+++|++|+++|+.|+++.++.+.. ++++..++|+.... ..++|+
T Consensus 83 --------------------------~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~~-------~~~~Il 127 (997)
T 4a4z_A 83 --------------------------TKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQIN-------PDANCL 127 (997)
T ss_dssp --------------------------CEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEEC-------TTSSEE
T ss_pred --------------------------CeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCccC-------CCCCEE
Confidence 5689999999999999999888653 57788888887643 347999
Q ss_pred EECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 239 VATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
|+||++|.+++.+....+.++++|||||||++.+++|...++.++..+ +.+.|++++|||+|+
T Consensus 128 V~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l----~~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 128 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML----PQHVKFILLSATVPN 190 (997)
T ss_dssp EEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS----CTTCEEEEEECCCTT
T ss_pred EECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc----ccCCCEEEEcCCCCC
Confidence 999999999998888778999999999999999999999999999887 567999999999985
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=1.1e-24 Score=233.89 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=139.2
Q ss_pred CCCCCCcHHHHHHHhhHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 79 ARYDKPTPVQKYAIPVII-SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~-~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
.||++++++|.+++|.++ +++|++++||||||||++|.+|+++.+.+......
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~-------------------------- 128 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG-------------------------- 128 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS--------------------------
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc--------------------------
Confidence 389999999999999987 46899999999999999999999999876532100
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
.....+.++||++|+++|+.|+++.++......++++..++|+.....+. ..+++|
T Consensus 129 ---------------------~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~I 184 (1724)
T 4f92_B 129 ---------------------TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQI 184 (1724)
T ss_dssp ---------------------SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSE
T ss_pred ---------------------cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCE
Confidence 01112367999999999999999999998888999999999988754322 246899
Q ss_pred EEECcHHHHHHHHcCCc--CCCCCceEEechhhhcccCCCHHHHHHHHHhcCC---CCCCCceEEEEeecCCC
Q psy12758 238 LVATPGRLVDMLERGKI--GLANCRFLVLDEADRMLDMGFEPQIRCIVQENGM---PRTGDRQTLMFSATFPK 305 (308)
Q Consensus 238 lV~TP~~L~~~l~~~~~--~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~---~~~~~~q~i~~SATl~~ 305 (308)
+|+||+++..++.+... .++++++|||||+|.+-| .++..++.++.++.. ..+.+.|+|++|||+|+
T Consensus 185 lVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N 256 (1724)
T 4f92_B 185 IVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN 256 (1724)
T ss_dssp EEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT
T ss_pred EEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC
Confidence 99999999777765432 378999999999996655 688888777654310 11457899999999985
No 54
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=5.3e-24 Score=190.30 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
.+|+++|.++++.++.+++.+++++||+|||++++.++...+....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~---------------------------------- 157 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE---------------------------------- 157 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS----------------------------------
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC----------------------------------
Confidence 3899999999999999888999999999999999888776553221
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEEC
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~T 241 (308)
.++||++||++|+.|+.++++++.......+..++||..... ....+++|+|+|
T Consensus 158 -----------------------~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T 211 (282)
T 1rif_A 158 -----------------------GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGT 211 (282)
T ss_dssp -----------------------SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEEC
T ss_pred -----------------------CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEc
Confidence 368999999999999999999987766677888888765433 233568999999
Q ss_pred cHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 242 P~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
|+++... ....+.+++++|+||||++.+ ..++.++..+ ...+|++++|||.++..
T Consensus 212 ~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~----~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 212 WQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL----NNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp HHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC----TTCCEEEEECSSCCTTS
T ss_pred hHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh----hcCCeEEEEeCCCCCcc
Confidence 9876433 233467889999999999974 4677777765 34789999999998753
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=1.9e-24 Score=215.80 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=128.8
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.....
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------------------------------- 52 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--------------------------------- 52 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---------------------------------
Confidence 37999999999999999999999999999999999999988755420
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCHHhHHHH-HHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEE
Q psy12758 162 YDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQI-YDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVA 240 (308)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi-~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~ 240 (308)
.....++||++|+++|+.|+ .++++.++.. ++++..++|+.....+...+...++|+|+
T Consensus 53 -------------------~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~ 112 (699)
T 4gl2_A 53 -------------------ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIIS 112 (699)
T ss_dssp -------------------HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEE
T ss_pred -------------------cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEE
Confidence 01125689999999999999 9999998865 58899999998877766666678999999
Q ss_pred CcHHHHHHH------HcCCcCCCCCceEEechhhhcccCC-CHHHHHHHHHhc---------CCCCCCCceEEEEeecCC
Q psy12758 241 TPGRLVDML------ERGKIGLANCRFLVLDEADRMLDMG-FEPQIRCIVQEN---------GMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 241 TP~~L~~~l------~~~~~~l~~~~~lViDEad~ll~~~-f~~~l~~i~~~l---------~~~~~~~~q~i~~SATl~ 304 (308)
||++|.+.+ ....+.+.++++|||||||++...+ +...+..++... .....+..|++++|||.+
T Consensus 113 Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~ 192 (699)
T 4gl2_A 113 TAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPG 192 (699)
T ss_dssp EHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCC
T ss_pred CHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEeccccc
Confidence 999999988 4455778899999999999987654 333333332210 011124579999999987
Q ss_pred C
Q psy12758 305 K 305 (308)
Q Consensus 305 ~ 305 (308)
.
T Consensus 193 ~ 193 (699)
T 4gl2_A 193 V 193 (699)
T ss_dssp C
T ss_pred c
Confidence 6
No 56
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=6.1e-23 Score=194.32 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=131.1
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|+++|.++++.++.+ ++++.++||+|||++++++++..+....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~----------------------------------- 52 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYG----------------------------------- 52 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSC-----------------------------------
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCC-----------------------------------
Confidence 6899999999999999 9999999999999999999988765221
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
.++||++|+++|+.|+.++++++......++..++|+........ +...++|+|+||
T Consensus 53 ----------------------~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~ 109 (494)
T 1wp9_A 53 ----------------------GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSK-AWARAKVIVATP 109 (494)
T ss_dssp ----------------------SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECH
T ss_pred ----------------------CeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhh-hccCCCEEEecH
Confidence 679999999999999999999887544558888888877654433 334689999999
Q ss_pred HHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 243 ~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
++|...+.++.+.+.++++||+||||++.+......+...+... ....+++++|||.+.
T Consensus 110 ~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~----~~~~~~l~lTaTp~~ 168 (494)
T 1wp9_A 110 QTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ----AKNPLVIGLTASPGS 168 (494)
T ss_dssp HHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH----CSSCCEEEEESCSCS
T ss_pred HHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc----CCCCeEEEEecCCCC
Confidence 99999998888888999999999999998765444444444443 346789999999874
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.8e-23 Score=209.83 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=128.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHhhHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy12758 70 EIITNNIALARYDKPTPVQKYAIPVIISG------RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKK 143 (308)
Q Consensus 70 ~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g------~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~ 143 (308)
+.+.+.+..++| .||++|.++|+.++++ +|++++|+||||||++|++|+++.+...
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----------------- 417 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----------------- 417 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------------
Confidence 344455678999 9999999999999876 5999999999999999999999876432
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCc
Q psy12758 144 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSN 223 (308)
Q Consensus 144 ~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~ 223 (308)
.+++|++||++|+.|+++.++.+....++++..++|+..
T Consensus 418 -----------------------------------------~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~ 456 (780)
T 1gm5_A 418 -----------------------------------------FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATT 456 (780)
T ss_dssp -----------------------------------------SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSC
T ss_pred -----------------------------------------CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCC
Confidence 679999999999999999999999888999999999987
Q ss_pred hhHhH---HhhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEE
Q psy12758 224 VGDQM---RDLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299 (308)
Q Consensus 224 ~~~~~---~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~ 299 (308)
..... ..+.. .++|+|+||+.|.+ .+.+.+++++||||+|++.... + ..+. ......|+++|
T Consensus 457 ~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q-----r---~~l~-~~~~~~~vL~m 522 (780)
T 1gm5_A 457 PSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ-----R---EALM-NKGKMVDTLVM 522 (780)
T ss_dssp HHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-------------CCCC-SSSSCCCEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH-----H---HHHH-HhCCCCCEEEE
Confidence 76543 33444 49999999987754 4568899999999999863221 1 1111 11346899999
Q ss_pred eecCCC
Q psy12758 300 SATFPK 305 (308)
Q Consensus 300 SATl~~ 305 (308)
|||.++
T Consensus 523 SATp~p 528 (780)
T 1gm5_A 523 SATPIP 528 (780)
T ss_dssp ESSCCC
T ss_pred eCCCCH
Confidence 999653
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.89 E-value=1.4e-23 Score=199.78 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=113.7
Q ss_pred CCCCCcHHHHHHHhhHhcCCCE-EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 80 RYDKPTPVQKYAIPVIISGRDV-MACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 80 ~~~~pt~iQ~~~ip~i~~g~d~-lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
|+.+|+|+|+ +||.+++|+|+ +++||||||||++|++|++..+...+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~------------------------------- 48 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR------------------------------- 48 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT-------------------------------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC-------------------------------
Confidence 7899999985 79999999887 99999999999999999998775432
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
++++|++|||+|+.|+++.+.. +.+. +....... ....+..|.
T Consensus 49 --------------------------~~~lvl~Ptr~La~Q~~~~l~g------~~v~--~~~~~~~~---~~~~~~~i~ 91 (451)
T 2jlq_A 49 --------------------------LRTLILAPTRVVAAEMEEALRG------LPIR--YQTPAVKS---DHTGREIVD 91 (451)
T ss_dssp --------------------------CCEEEEESSHHHHHHHHHHTTT------SCEE--ECCTTCSC---CCCSSCCEE
T ss_pred --------------------------CcEEEECCCHHHHHHHHHHhcC------ceee--eeeccccc---cCCCCceEE
Confidence 6789999999999999887742 2221 11111100 112346799
Q ss_pred EECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 239 VATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 239 V~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
++|++.|...+.+. ..++++++|||||||++ +.++...+..+..... ..++|+++||||+|.++
T Consensus 92 ~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~ 155 (451)
T 2jlq_A 92 LMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE---MGEAAAIFMTATPPGST 155 (451)
T ss_dssp EEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH---TTSCEEEEECSSCTTCC
T ss_pred EEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc---CCCceEEEEccCCCccc
Confidence 99999998877655 45889999999999977 5444444444433321 34689999999999865
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.88 E-value=5.2e-23 Score=198.30 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=128.2
Q ss_pred CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHH
Q psy12758 81 YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160 (308)
Q Consensus 81 ~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q 160 (308)
...|+++|.++++.+++++|++++++||+|||++|+.++...+....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--------------------------------- 157 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--------------------------------- 157 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS---------------------------------
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC---------------------------------
Confidence 34899999999999999999999999999999999999887664321
Q ss_pred HHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEE
Q psy12758 161 IYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVA 240 (308)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~ 240 (308)
.++||++||++|+.|+.+.++++....+.++..++|+.....+ +..+++|+|+
T Consensus 158 ------------------------~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~ 210 (510)
T 2oca_A 158 ------------------------GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVG 210 (510)
T ss_dssp ------------------------SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEE
T ss_pred ------------------------CeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEE
Confidence 4799999999999999999998877767788888888776554 4567899999
Q ss_pred CcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 241 TPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 241 TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
||+.|.. .....++++++|||||||++.. ..+..++..+ ....+++++|||.++..
T Consensus 211 T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~----~~~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 211 TWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGL----NNCMFKFGLSGSLRDGK 266 (510)
T ss_dssp EHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC----TTCCEEEEEESCGGGCS
T ss_pred eHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc----ccCcEEEEEEeCCCCCc
Confidence 9996543 3335578899999999999876 5577777766 44679999999997653
No 60
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=1.2e-22 Score=201.48 Aligned_cols=130 Identities=20% Similarity=0.140 Sum_probs=114.1
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
+|| .||++|..++|.++.|+ |++++||+|||++|.+|++...+..
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-------------------------------- 120 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-------------------------------- 120 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC--------------------------------
Confidence 799 99999999999999998 9999999999999999997544321
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEE
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLL 238 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Il 238 (308)
..++|++||++||.|.++++..+....++++.+++||.+.. .+.+..++||+
T Consensus 121 --------------------------~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIv 172 (997)
T 2ipc_A 121 --------------------------KGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPA--ERRKAYLADVT 172 (997)
T ss_dssp --------------------------SCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHH--HHHHHHTSSEE
T ss_pred --------------------------CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHHcCCCEE
Confidence 45899999999999999999999999999999999998743 34444579999
Q ss_pred EECcHHH-HHHHHcCC------cCCC---CCceEEechhhhcc
Q psy12758 239 VATPGRL-VDMLERGK------IGLA---NCRFLVLDEADRML 271 (308)
Q Consensus 239 V~TP~~L-~~~l~~~~------~~l~---~~~~lViDEad~ll 271 (308)
||||++| .++|..+. +.++ ++.++||||||.||
T Consensus 173 yGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 173 YVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999 89987763 4577 89999999999987
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.88 E-value=6.3e-24 Score=208.94 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=124.8
Q ss_pred CccC-CCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy12758 62 QFDD-IQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140 (308)
Q Consensus 62 ~f~~-l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 140 (308)
.|+. +++++.+.++|... +..|+|+|+.++|.+++|+|++++|+||||||++|++|+++.+...+
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~------------- 215 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR------------- 215 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-------------
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC-------------
Confidence 4555 67788777777554 58999999999999999999999999999999999999999876532
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec
Q psy12758 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG 220 (308)
Q Consensus 141 ~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g 220 (308)
+++||++|||+|+.|+++.++. ..+. +.+
T Consensus 216 --------------------------------------------~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~ 244 (618)
T 2whx_A 216 --------------------------------------------LRTLILAPTRVVAAEMEEALRG------LPIR-YQT 244 (618)
T ss_dssp --------------------------------------------CCEEEEESSHHHHHHHHHHTTT------SCEE-ECC
T ss_pred --------------------------------------------CeEEEEcChHHHHHHHHHHhcC------Ccee-Eec
Confidence 6788999999999998887762 2222 111
Q ss_pred CCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 221 GSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 221 g~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+. .. ..-..+..+.+.|.+.+...+... ..++++++|||||||++ +.+|...+..++..+. ..++|+++||
T Consensus 245 ~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~---~~~~q~il~S 315 (618)
T 2whx_A 245 PA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE---MGEAAAIFMT 315 (618)
T ss_dssp TT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH---HTSCEEEEEC
T ss_pred cc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhc---ccCccEEEEE
Confidence 11 00 001123457788888887766554 34899999999999998 7778888888887762 2478999999
Q ss_pred ecCCCCC
Q psy12758 301 ATFPKEI 307 (308)
Q Consensus 301 ATl~~~v 307 (308)
||+|..+
T Consensus 316 AT~~~~~ 322 (618)
T 2whx_A 316 ATPPGST 322 (618)
T ss_dssp SSCTTCC
T ss_pred CCCchhh
Confidence 9999875
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=5.8e-21 Score=199.45 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=129.9
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHhhHhc----CC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 66 IQMTEIITNNIA-LARYDKPTPVQKYAIPVIIS----GR--DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 66 l~l~~~l~~~L~-~~~~~~pt~iQ~~~ip~i~~----g~--d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
++.+....+.+. ..+|+ ||++|.++|+.+++ |+ |++++++||+|||++|+++++..+...
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g------------ 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH------------ 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC------------
Confidence 345666666664 46775 79999999999986 65 999999999999999999988754321
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
.+++|++||++|+.|+++.++.+....++++..+
T Consensus 653 ----------------------------------------------~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l 686 (1151)
T 2eyq_A 653 ----------------------------------------------KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMI 686 (1151)
T ss_dssp ----------------------------------------------CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEE
T ss_pred ----------------------------------------------CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5799999999999999999998888778888888
Q ss_pred ecCCchhHh---HHhhcC-CCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCc
Q psy12758 219 YGGSNVGDQ---MRDLDR-GCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDR 294 (308)
Q Consensus 219 ~gg~~~~~~---~~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~ 294 (308)
.|....... ...+.. .++|+|+||+.|. ..+.++++++|||||||++ ......++..+ ..+.
T Consensus 687 ~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l----~~~~ 752 (1151)
T 2eyq_A 687 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHKERIKAM----RANV 752 (1151)
T ss_dssp STTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHHHHHHHH----HTTS
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHHHHHHHh----cCCC
Confidence 877665443 333444 5999999997653 3466899999999999995 23445555554 3468
Q ss_pred eEEEEeecCCC
Q psy12758 295 QTLMFSATFPK 305 (308)
Q Consensus 295 q~i~~SATl~~ 305 (308)
++++||||.++
T Consensus 753 ~vl~lSATp~p 763 (1151)
T 2eyq_A 753 DILTLTATPIP 763 (1151)
T ss_dssp EEEEEESSCCC
T ss_pred CEEEEcCCCCh
Confidence 99999999754
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.86 E-value=1.9e-22 Score=197.97 Aligned_cols=145 Identities=20% Similarity=0.167 Sum_probs=114.3
Q ss_pred CcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHH
Q psy12758 84 PTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYD 163 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~ 163 (308)
+...|..+++.+..++|++++|+||||||++|.+|+++. +
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g------------------------------------ 257 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----G------------------------------------ 257 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----T------------------------------------
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----C------------------------------------
Confidence 345556666666688999999999999999999998751 1
Q ss_pred HHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcH
Q psy12758 164 EAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPG 243 (308)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 243 (308)
.+++|++|||+||.|+++.+.+.. +..+...+|+.. +..+++|+|+||+
T Consensus 258 ---------------------~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPG 306 (666)
T 3o8b_A 258 ---------------------YKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYG 306 (666)
T ss_dssp ---------------------CCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHH
T ss_pred ---------------------CeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcH
Confidence 468999999999999988665543 455666677654 3567899999999
Q ss_pred HHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCce--EEEEeecCCCCC
Q psy12758 244 RLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQ--TLMFSATFPKEI 307 (308)
Q Consensus 244 ~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q--~i~~SATl~~~v 307 (308)
+| +.+..+.++++++||||||| +++.+|...+..|+..++ ..+| ++++|||+|..+
T Consensus 307 rL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~----~~~~~llil~SAT~~~~i 364 (666)
T 3o8b_A 307 KF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAE----TAGARLVVLATATPPGSV 364 (666)
T ss_dssp HH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTT----TTTCSEEEEEESSCTTCC
T ss_pred HH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhh----hcCCceEEEECCCCCccc
Confidence 97 56777888999999999995 778889888999998873 3344 777899998754
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.84 E-value=2.4e-20 Score=177.95 Aligned_cols=137 Identities=22% Similarity=0.146 Sum_probs=111.9
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|+++|.++++.++.+++++++++||+|||++|+.++... .
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~----------------------------------- 133 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S----------------------------------- 133 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----C-----------------------------------
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----C-----------------------------------
Confidence 6999999999999999999999999999999999988753 1
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCc-eEEEecCCchhHhHHhhcCCCeEEEEC
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLR-PCVVYGGSNVGDQMRDLDRGCHLLVAT 241 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~T 241 (308)
.++||++|+++|+.|+.++++.+ +++ +..++|+... .++|+|+|
T Consensus 134 ----------------------~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T 178 (472)
T 2fwr_A 134 ----------------------TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVST 178 (472)
T ss_dssp ----------------------SCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEE
T ss_pred ----------------------CCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEE
Confidence 56899999999999999988884 567 6666666542 47899999
Q ss_pred cHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 242 P~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
|+++...+..- .+++++|||||||++.+.+|.. ++..+ ...+++++|||.++
T Consensus 179 ~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-----~~~~~l~lSATp~~ 230 (472)
T 2fwr_A 179 YDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-----IAPFRLGLTATFER 230 (472)
T ss_dssp HHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-----CCSEEEEEESCCCC
T ss_pred cHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-----CCCeEEEEecCccC
Confidence 99998766421 2468999999999999988754 44543 25789999999873
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.84 E-value=1.8e-23 Score=207.20 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=106.9
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHhhHh------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCC
Q psy12758 75 NIALARYD-----KPTPVQK-----YAIPVII------SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGY 138 (308)
Q Consensus 75 ~L~~~~~~-----~pt~iQ~-----~~ip~i~------~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~ 138 (308)
+|..+||. .||++|+ ++||.++ +|+|++++|+||||||++|++|+++.+...+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~----------- 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR----------- 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT-----------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----------
Confidence 56677888 9999999 9999988 8999999999999999999999998875432
Q ss_pred CCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE
Q psy12758 139 PSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 218 (308)
Q Consensus 139 ~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 218 (308)
++++|++||++|+.|+++.++.+. +. ..
T Consensus 271 ----------------------------------------------~~~lilaPTr~La~Q~~~~l~~~~----i~--~~ 298 (673)
T 2wv9_A 271 ----------------------------------------------LRTAVLAPTRVVAAEMAEALRGLP----VR--YL 298 (673)
T ss_dssp ----------------------------------------------CCEEEEESSHHHHHHHHHHTTTSC----CE--EC
T ss_pred ----------------------------------------------CcEEEEccHHHHHHHHHHHHhcCC----ee--ee
Confidence 678889999999999888776442 11 00
Q ss_pred ecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEE
Q psy12758 219 YGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLM 298 (308)
Q Consensus 219 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~ 298 (308)
.+... ..-..+.-+-+.+.+.+...+... ..++++++|||||||++ +..+...+..+...+. ..++|+++
T Consensus 299 ~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~vl~ 368 (673)
T 2wv9_A 299 TPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVE---AGEAAAIF 368 (673)
T ss_dssp CC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH---TTSCEEEE
T ss_pred ccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhcc---ccCCcEEE
Confidence 00000 000011123334444444433333 46899999999999998 3323333444433331 24789999
Q ss_pred EeecCCCCCC
Q psy12758 299 FSATFPKEIQ 308 (308)
Q Consensus 299 ~SATl~~~v~ 308 (308)
||||++..++
T Consensus 369 ~SAT~~~~i~ 378 (673)
T 2wv9_A 369 MTATPPGTSD 378 (673)
T ss_dssp ECSSCTTCCC
T ss_pred EcCCCChhhh
Confidence 9999998763
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=4.9e-20 Score=160.70 Aligned_cols=138 Identities=22% Similarity=0.153 Sum_probs=108.3
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.|+++|.++++.++.+++++++++||+|||++++.++... .
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~----------------------------------- 133 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----S----------------------------------- 133 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----C-----------------------------------
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----C-----------------------------------
Confidence 7899999999999999999999999999999998876542 1
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCc-eEEEecCCchhHhHHhhcCCCeEEEEC
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLR-PCVVYGGSNVGDQMRDLDRGCHLLVAT 241 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~IlV~T 241 (308)
.+++|++|+++|+.|+.+.++.+ +++ +..+.|+.. ...+|+|+|
T Consensus 134 ----------------------~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T 178 (237)
T 2fz4_A 134 ----------------------TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVST 178 (237)
T ss_dssp ----------------------SCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEE
T ss_pred ----------------------CCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEe
Confidence 45889999999999998888873 566 666666543 246899999
Q ss_pred cHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCC
Q psy12758 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKE 306 (308)
Q Consensus 242 P~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~ 306 (308)
|+.+......- ...+++|||||||++.+..| +.++..+ ...+++++|||.++.
T Consensus 179 ~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~-----~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 179 YDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMS-----IAPFRLGLTATFERE 231 (237)
T ss_dssp HHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTC-----CCSEEEEEEESCC--
T ss_pred HHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhc-----cCCEEEEEecCCCCC
Confidence 99987765521 24688999999999987655 3455554 257899999998753
No 67
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.81 E-value=2.7e-21 Score=183.42 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=93.2
Q ss_pred hHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhc
Q psy12758 94 VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQ 173 (308)
Q Consensus 94 ~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~ 173 (308)
.+++|+|++++|+||||||++|++|+++.+...+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~---------------------------------------------- 37 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR---------------------------------------------- 37 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT----------------------------------------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC----------------------------------------------
Confidence 4678999999999999999999999999775542
Q ss_pred CCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc--
Q psy12758 174 LRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER-- 251 (308)
Q Consensus 174 ~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-- 251 (308)
++++|++||++|+.|+++.++.+. +....+.. -.|+||+++.+++.+
T Consensus 38 -----------~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~--------------~~v~Tp~~l~~~l~~~~ 86 (440)
T 1yks_A 38 -----------LRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAF--------------SAHGSGREVIDAMCHAT 86 (440)
T ss_dssp -----------CCEEEEESSHHHHHHHHHHTTTSC------EEEESSCC--------------CCCCCSSCCEEEEEHHH
T ss_pred -----------CeEEEEcchHHHHHHHHHHHhcCC------eEEecccc--------------eeccCCccceeeecccc
Confidence 678999999999999988877432 11111100 036677665543322
Q ss_pred ------CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 252 ------GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 252 ------~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
....++++++|||||||++ +.+|...+..+...+. ..++|+++||||+++.+
T Consensus 87 l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~---~~~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 87 LTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR---ANESATILMTATPPGTS 144 (440)
T ss_dssp HHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH---TTSCEEEEECSSCTTCC
T ss_pred hhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc---cCCceEEEEeCCCCchh
Confidence 2234789999999999998 4444444444433321 24689999999998765
No 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.80 E-value=4.8e-20 Score=175.68 Aligned_cols=139 Identities=21% Similarity=0.236 Sum_probs=95.6
Q ss_pred HhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhh
Q psy12758 92 IPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 92 ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
...+.+|++++++||||||||++|++|+++.+...+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-------------------------------------------- 50 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-------------------------------------------- 50 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT--------------------------------------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC--------------------------------------------
Confidence 445667899999999999999999999998876432
Q ss_pred hcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHc
Q psy12758 172 SQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLER 251 (308)
Q Consensus 172 ~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 251 (308)
+++||++|||+|+.|+++.++. +.+....+.... .-..+..+.+.|.+.+...+..
T Consensus 51 -------------~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~ 106 (459)
T 2z83_A 51 -------------LRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMS 106 (459)
T ss_dssp -------------CCEEEEECSHHHHHHHHHHTTT------SCEEECC-------------CCCSEEEEEHHHHHHHHHS
T ss_pred -------------CcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhc
Confidence 5688899999999998887762 222111111100 0112345778888888776655
Q ss_pred CCcCCCCCceEEechhhh-----cccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCCC
Q psy12758 252 GKIGLANCRFLVLDEADR-----MLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEIQ 308 (308)
Q Consensus 252 ~~~~l~~~~~lViDEad~-----ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v~ 308 (308)
. ..++++++|||||||+ ++..+|...+ .. ..++|+++||||+|.+++
T Consensus 107 ~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~~------~~~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 107 P-NRVPNYNLFVMDEAHFTDPASIAARGYIATK---VE------LGEAAAIFMTATPPGTTD 158 (459)
T ss_dssp C-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---HH------TTSCEEEEECSSCTTCCC
T ss_pred c-ccccCCcEEEEECCccCCchhhHHHHHHHHH---hc------cCCccEEEEEcCCCcchh
Confidence 4 4588999999999998 4444432221 11 247899999999998763
No 69
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.79 E-value=2.7e-19 Score=169.20 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=97.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcCCc
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRP 176 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~ 176 (308)
.|+|+++++|||||||++|++|+++.+...+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g------------------------------------------------- 31 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR------------------------------------------------- 31 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-------------------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 4789999999999999999999997765442
Q ss_pred cccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCC
Q psy12758 177 CVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGL 256 (308)
Q Consensus 177 ~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l 256 (308)
.+++|++||++|+.|+++.++ ++.+....|+... .-..+..+.+.|.+.+...+.. ...+
T Consensus 32 --------~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~ 91 (431)
T 2v6i_A 32 --------LRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRV 91 (431)
T ss_dssp --------CCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCC
T ss_pred --------CCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-Cccc
Confidence 578999999999999887765 3444433333221 1112345677899988776665 4558
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCCCC
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEI 307 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~~v 307 (308)
+++++|||||||++ +.++...+..+.... . ..++|+++||||+++.+
T Consensus 92 ~~l~~vViDEaH~~-~~~~~~~~~~l~~~~-~--~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 92 PNYNLYIMDEAHFL-DPASVAARGYIETRV-S--MGDAGAIFMTATPPGTT 138 (431)
T ss_dssp CCCSEEEEESTTCC-SHHHHHHHHHHHHHH-H--TTSCEEEEEESSCTTCC
T ss_pred cCCCEEEEeCCccC-CccHHHHHHHHHHHh-h--CCCCcEEEEeCCCCcch
Confidence 99999999999997 544444544444432 1 34789999999998765
No 70
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.78 E-value=4.2e-19 Score=172.88 Aligned_cols=148 Identities=19% Similarity=0.049 Sum_probs=98.2
Q ss_pred CCcHHHHHHHhh----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~----i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|+|.|.+++.. +..|+|++++||||+|||++|++|++.. ..+++|++||++|+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------------~~~v~i~~pt~~l~ 60 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------------KPKVLFVVRTHNEF 60 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------------CSEEEEEESSGGGH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------------CCeEEEEcCCHHHH
Confidence 689999997764 4578999999999999999999999971 14688888888888
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhH--------------------------------HHHHHHHHH
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELA--------------------------------TQIYDEAKK 206 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~--------------------------------~qi~~~~~~ 206 (308)
.|+.++++++...... ++.++.-...+| ....+.++.
T Consensus 61 ~q~~~~~~~l~~~~~~-----------~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~ 129 (551)
T 3crv_A 61 YPIYRDLTKIREKRNI-----------TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKK 129 (551)
T ss_dssp HHHHHHHTTCCCSSCC-----------CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCc-----------cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHH
Confidence 8888777766322111 111111100000 011111111
Q ss_pred hhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCC-CCCceEEechhhhccc
Q psy12758 207 FAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGL-ANCRFLVLDEADRMLD 272 (308)
Q Consensus 207 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l-~~~~~lViDEad~ll~ 272 (308)
.+. ..+.+.....+.....+||+|+||++|.+...+..+.+ ....++||||||+|.+
T Consensus 130 ~G~---------~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 130 DGL---------QDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHH---------HHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCC---------cCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 110 12344455556666789999999999998765554433 4677899999999998
No 71
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.78 E-value=2.8e-19 Score=180.01 Aligned_cols=178 Identities=19% Similarity=0.189 Sum_probs=124.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCC
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYP 139 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~ 139 (308)
.+|+++++++.+.+.|...+ ..|+++|+++|+.++.+ ++++++||||||||+ ++|++.......
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~------------ 136 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP------------ 136 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG------------
T ss_pred CCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc------------
Confidence 47999999999999999888 89999999999887755 689999999999999 566662211100
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEe
Q psy12758 140 SRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVY 219 (308)
Q Consensus 140 ~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 219 (308)
...+.+++|++|+++|+.|+++.+.... +..+...+
T Consensus 137 -----------------------------------------~~~g~~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~v 172 (773)
T 2xau_A 137 -----------------------------------------HLENTQVACTQPRRVAAMSVAQRVAEEM---DVKLGEEV 172 (773)
T ss_dssp -----------------------------------------GGGTCEEEEEESCHHHHHHHHHHHHHHT---TCCBTTTE
T ss_pred -----------------------------------------cCCCceEEecCchHHHHHHHHHHHHHHh---CCchhhee
Confidence 0012557888899999988877654432 22222222
Q ss_pred cCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhh-cccCCC-HHHHHHHHHhcCCCCCCCceEE
Q psy12758 220 GGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADR-MLDMGF-EPQIRCIVQENGMPRTGDRQTL 297 (308)
Q Consensus 220 gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~-ll~~~f-~~~l~~i~~~l~~~~~~~~q~i 297 (308)
|+..... .......+|+|+|||++...+.... .+.++++|||||+|. +++..+ ...++.+.... ++.|++
T Consensus 173 G~~i~~~--~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iI 244 (773)
T 2xau_A 173 GYSIRFE--NKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-----PDLKII 244 (773)
T ss_dssp EEEETTE--EECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEE
T ss_pred cceeccc--cccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCccccccchHHHHHHHHHHHHhC-----CCceEE
Confidence 2110000 1112467899999999998776653 488999999999995 666432 23445555442 368999
Q ss_pred EEeecCCC
Q psy12758 298 MFSATFPK 305 (308)
Q Consensus 298 ~~SATl~~ 305 (308)
++|||++.
T Consensus 245 l~SAT~~~ 252 (773)
T 2xau_A 245 IMSATLDA 252 (773)
T ss_dssp EEESCSCC
T ss_pred EEeccccH
Confidence 99999963
No 72
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=2.9e-19 Score=175.31 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCCcHHHHHHHhhHhc----C-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchH
Q psy12758 82 DKPTPVQKYAIPVIIS----G-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRE 156 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~----g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~ 156 (308)
..|+++|.++++.++. | ++++++++||||||++++. ++..+........
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~------------------------- 230 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRT------------------------- 230 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSS-------------------------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccc-------------------------
Confidence 3799999999999876 5 6699999999999999654 5555544321000
Q ss_pred HHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHH-HHHHHhhhcCCCceEEEecCCchhHhHHhhcCCC
Q psy12758 157 LATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIY-DEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGC 235 (308)
Q Consensus 157 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~-~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 235 (308)
.....+++||++||++|+.|+. +.++.+. .....+.++ ....+.
T Consensus 231 -----------------------~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~----~~~~~~~~~--------~~~~~~ 275 (590)
T 3h1t_A 231 -----------------------GDYRKPRILFLADRNVLVDDPKDKTFTPFG----DARHKIEGG--------KVVKSR 275 (590)
T ss_dssp -----------------------CSSSCCCEEEEEC-----------CCTTTC----SSEEECCC----------CCSSC
T ss_pred -----------------------cccCCCeEEEEeCCHHHHHHHHHHHHHhcc----hhhhhhhcc--------CCCCCC
Confidence 0012267888888888888887 6665543 222233222 233568
Q ss_pred eEEEECcHHHHHHHHc----CCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 236 HLLVATPGRLVDMLER----GKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 236 ~IlV~TP~~L~~~l~~----~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
+|+|+||++|...+.. ..+....+++||+||||++...+ ...++.++..++ ..++++||||..+
T Consensus 276 ~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-----~~~~l~lTATP~~ 343 (590)
T 3h1t_A 276 EIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-----PAFQIGMTATPLR 343 (590)
T ss_dssp SEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-----TSEEEEEESSCSC
T ss_pred cEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-----cceEEEecccccc
Confidence 9999999999887652 23446788999999999997653 245677777762 4789999999764
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.76 E-value=1.3e-18 Score=178.92 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=115.8
Q ss_pred CCCcHHHHHHHhhHhc--------------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccc
Q psy12758 82 DKPTPVQKYAIPVIIS--------------GRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPL 147 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~--------------g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (308)
..|+++|.+|++.++. +++.+++++||||||+++ ++++..+...+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~-------------------- 328 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD-------------------- 328 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------------------
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------------------
Confidence 3599999999999875 378999999999999997 66665442211
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQ 227 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~ 227 (308)
...++|||+|+++|+.|+.+.++.+... .+.++.+....
T Consensus 329 -----------------------------------~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l 367 (1038)
T 2w00_A 329 -----------------------------------FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGL 367 (1038)
T ss_dssp -----------------------------------TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHH
T ss_pred -----------------------------------CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHH
Confidence 0156899999999999998888887643 12345555555
Q ss_pred HHhh-cCCCeEEEECcHHHHHHHHcCC--cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 228 MRDL-DRGCHLLVATPGRLVDMLERGK--IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 228 ~~~l-~~~~~IlV~TP~~L~~~l~~~~--~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
...+ ..+++|+|+||++|..++.... ..++...+||+||||++... .....|...+ ++.++++||||..
T Consensus 368 ~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~-----p~a~~lgfTATP~ 439 (1038)
T 2w00_A 368 KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQKNLKKKF-----KRYYQFGFTGTPI 439 (1038)
T ss_dssp HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHHHHHHHC-----SSEEEEEEESSCC
T ss_pred HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHHHHHHhC-----CcccEEEEeCCcc
Confidence 5555 3578999999999999887543 23567889999999998743 3456677765 2579999999986
Q ss_pred C
Q psy12758 305 K 305 (308)
Q Consensus 305 ~ 305 (308)
.
T Consensus 440 ~ 440 (1038)
T 2w00_A 440 F 440 (1038)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.70 E-value=1.1e-17 Score=162.47 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=87.9
Q ss_pred CCCCCCcHHHHHHHhh----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc
Q psy12758 79 ARYDKPTPVQKYAIPV----IISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPT 154 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~----i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt 154 (308)
.|| .|+++|.+++.. +..|++++++||||+|||++|++|++.. ..+++|++||
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------------~~~~~~~~~t 60 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------------KKKVLIFTRT 60 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------------TCEEEEEESC
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------------CCcEEEEcCC
Confidence 577 899999998654 5688999999999999999999998763 1479999999
Q ss_pred hHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhH-H---------HHHHHHHHhhhcCC---CceEEEecC
Q psy12758 155 RELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELA-T---------QIYDEAKKFAYRSQ---LRPCVVYGG 221 (308)
Q Consensus 155 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~-~---------qi~~~~~~~~~~~~---~~~~~~~gg 221 (308)
++|+.|+.+++.++.... ..... .. .+|+.+... . .+.......+.... +....-..+
T Consensus 61 ~~l~~q~~~~~~~l~~~~----~~l~g---r~--~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~ 131 (540)
T 2vl7_A 61 HSQLDSIYKNAKLLGLKT----GFLIG---KS--ASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVD 131 (540)
T ss_dssp HHHHHHHHHHHGGGTCCE----EEC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCcE----EEecC---Cc--cccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcC
Confidence 999999998887752111 00000 00 112211100 0 00000000000000 000000122
Q ss_pred CchhHhHHhhcCCCeEEEECcHHHHHHHHcCCc-------CCCCCceEEechhhhccc
Q psy12758 222 SNVGDQMRDLDRGCHLLVATPGRLVDMLERGKI-------GLANCRFLVLDEADRMLD 272 (308)
Q Consensus 222 ~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-------~l~~~~~lViDEad~ll~ 272 (308)
.+.....+.....+||+|+|++.|.+...++.+ .+.+..++||||||+|.+
T Consensus 132 ~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 132 YCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp -------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred CChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 333344455556789999999999875543322 245678999999999943
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.69 E-value=3.7e-17 Score=161.76 Aligned_cols=135 Identities=15% Similarity=0.090 Sum_probs=101.2
Q ss_pred HHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHHh
Q psy12758 91 AIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 91 ~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~~ 170 (308)
.....+.|++++++||||||||+ ++++.+...
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-------------------------------------------- 179 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-------------------------------------------- 179 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------------------------------------------
T ss_pred HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------------------------------------------
Confidence 33455689999999999999998 455555433
Q ss_pred hhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHH
Q psy12758 171 RSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLE 250 (308)
Q Consensus 171 ~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 250 (308)
..++|++|||+||.|+++.++.. ++++..++|+....-. .-....+++++|++.+.
T Consensus 180 --------------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~---- 235 (677)
T 3rc3_A 180 --------------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS---- 235 (677)
T ss_dssp --------------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC----
T ss_pred --------------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh----
Confidence 33588899999999999998775 6778888887654110 00113678888875432
Q ss_pred cCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 251 RGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 251 ~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
....++++||||||++++.+|+..++.++..+. ....|++++|||.+
T Consensus 236 ----l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~---~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 236 ----VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC---AEEVHLCGEPAAID 282 (677)
T ss_dssp ----SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC---EEEEEEEECGGGHH
T ss_pred ----hcccCCEEEEecceecCCccchHHHHHHHHccC---ccceEEEeccchHH
Confidence 246779999999999999999999999988873 24689999999953
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.61 E-value=1.8e-15 Score=145.21 Aligned_cols=149 Identities=18% Similarity=0.185 Sum_probs=103.5
Q ss_pred CCCcHHHHHHHhhH----hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 82 DKPTPVQKYAIPVI----ISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i----~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
..++|+|.+++..+ ..+++++++.+||+|||+.++..+. .+.....
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~----------------------------- 85 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENE----------------------------- 85 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTC-----------------------------
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCC-----------------------------
Confidence 36899999999876 3578999999999999999755443 3332211
Q ss_pred HHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeE
Q psy12758 158 ATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHL 237 (308)
Q Consensus 158 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 237 (308)
...+||+|| ..|+.|..+++++++. +.++..++|+... ......+|
T Consensus 86 --------------------------~~~~LIv~P-~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~i 131 (500)
T 1z63_A 86 --------------------------LTPSLVICP-LSVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDI 131 (500)
T ss_dssp --------------------------CSSEEEEEC-STTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSE
T ss_pred --------------------------CCCEEEEcc-HHHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcE
Confidence 145888888 4588888888888764 3455555555421 12235799
Q ss_pred EEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCC
Q psy12758 238 LVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFP 304 (308)
Q Consensus 238 lV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~ 304 (308)
+|+||+++..... +....+++||+||||++.+.+. .....+..+ ...+.+++|||.-
T Consensus 132 vi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l-----~~~~~l~LTaTP~ 188 (500)
T 1z63_A 132 ILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL-----KSKYRIALTGTPI 188 (500)
T ss_dssp EEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS-----CEEEEEEECSSCS
T ss_pred EEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh-----ccCcEEEEecCCC
Confidence 9999999865433 2234678999999999987642 334444444 2357899999963
No 77
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.58 E-value=3.5e-15 Score=146.88 Aligned_cols=72 Identities=26% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCcHHHHHHHh----hHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIP----VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip----~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
+|++.|.+.+. .+.+|+|++++||||||||++|++|++..+...+ .+++|++||++|+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------------~kvli~t~T~~l~ 64 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------------LKVLYLVRTNSQE 64 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------------CEEEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC------------------CeEEEECCCHHHH
Confidence 68999988875 4568999999999999999999999999886542 4799999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy12758 159 TQIYDEAKKFAYRS 172 (308)
Q Consensus 159 ~q~~~~~~~~~~~~ 172 (308)
.|+.++++++....
T Consensus 65 ~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 65 EQVIKELRSLSSTM 78 (620)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999986543
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.51 E-value=2.2e-14 Score=147.86 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=103.4
Q ss_pred CCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHH
Q psy12758 82 DKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELAT 159 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~ 159 (308)
..|+|+|.+++..++.. .+++++++||+|||+.++..+...+.....
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~------------------------------- 200 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA------------------------------- 200 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-------------------------------
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-------------------------------
Confidence 37999999999888864 589999999999999998777665543321
Q ss_pred HHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHH--hhcCCCeE
Q psy12758 160 QIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMR--DLDRGCHL 237 (308)
Q Consensus 160 q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~I 237 (308)
.++|||||+ .|+.|..+++.+.. ++++..+.|+........ ......+|
T Consensus 201 -------------------------~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dI 251 (968)
T 3dmq_A 201 -------------------------ERVLIIVPE-TLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQL 251 (968)
T ss_dssp -------------------------CCEEEECCT-TTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSE
T ss_pred -------------------------CeEEEEeCH-HHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCE
Confidence 458888998 88888888876554 555555544332211111 11235799
Q ss_pred EEECcHHHHHHHHc-CCcCCCCCceEEechhhhcccCCCHH-HHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 238 LVATPGRLVDMLER-GKIGLANCRFLVLDEADRMLDMGFEP-QIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 238 lV~TP~~L~~~l~~-~~~~l~~~~~lViDEad~ll~~~f~~-~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+|+|++.|...... ..+...++++|||||||++...+... ....++..+. ...++++++|||.
T Consensus 252 vI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~---~~~~~~L~LTATP 316 (968)
T 3dmq_A 252 VICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA---EHVPGVLLLTATP 316 (968)
T ss_dssp EEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH---TTCSSEEESCSSC
T ss_pred EEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh---hcCCcEEEEEcCC
Confidence 99999877532111 11234578899999999997654211 1122222221 1245699999996
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.43 E-value=2.3e-12 Score=127.57 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=104.4
Q ss_pred CCcHHHHHHHhhHh---------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccc
Q psy12758 83 KPTPVQKYAIPVII---------SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAP 153 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~---------~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~p 153 (308)
.++|+|.+++..+. .++..|+..+||+|||+..+..+...+...+. .
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~----------------------- 110 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-C----------------------- 110 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-S-----------------------
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-c-----------------------
Confidence 67899999998764 45689999999999999987766654432211 0
Q ss_pred chHHHHHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHh--HHh-
Q psy12758 154 TRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQ--MRD- 230 (308)
Q Consensus 154 t~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~- 230 (308)
.....++|||+|+ .|+.|..+++.++... .+.+..++||...... ...
T Consensus 111 ---------------------------~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 161 (644)
T 1z3i_X 111 ---------------------------KPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNF 161 (644)
T ss_dssp ---------------------------SCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHH
T ss_pred ---------------------------cCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHH
Confidence 0001347888885 7778888888887654 4556666666533211 111
Q ss_pred hc-----CCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 231 LD-----RGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 231 l~-----~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
+. ...+|+|+|++.+.... ..+.-..+++||+||||++-+.. ......+..+. ....+++|||-
T Consensus 162 ~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l~-----~~~rl~LTgTP 230 (644)
T 1z3i_X 162 ISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD--NQTYLALNSMN-----AQRRVLISGTP 230 (644)
T ss_dssp HCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC--HHHHHHHHHHC-----CSEEEEECSSC
T ss_pred HHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh--hHHHHHHHhcc-----cCcEEEEecCc
Confidence 11 24789999999886543 22334567899999999997653 23333344442 34678999995
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.3e-12 Score=132.25 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=105.2
Q ss_pred CCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 83 KPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.++++|.+++..+. .+++.|++.++|.|||+..+..+...+.....
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~------------------------------ 285 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ------------------------------ 285 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC------------------------------
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC------------------------------
Confidence 68899999997665 78999999999999999887666554433221
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh--------
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD-------- 230 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-------- 230 (308)
...+||||| ..++.|..+++.+++ .++++.+++|+.......+.
T Consensus 286 -------------------------~~~~LIV~P-~sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 337 (800)
T 3mwy_W 286 -------------------------NGPHIIVVP-LSTMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPR 337 (800)
T ss_dssp -------------------------CSCEEEECC-TTTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-
T ss_pred -------------------------CCCEEEEEC-chHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHHHhhcccc
Confidence 034688888 677888888887776 34566666666554444332
Q ss_pred ----hcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 231 ----LDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 231 ----l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
....++|+|+|++.+...... +.--..++|||||||++-+.+ ......+..+ .....+++|||-
T Consensus 338 ~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l-----~~~~rl~LTgTP 405 (800)
T 3mwy_W 338 AKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSF-----KVANRMLITGTP 405 (800)
T ss_dssp ----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTS-----EEEEEEEECSCC
T ss_pred ccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHh-----hhccEEEeeCCc
Confidence 123578999999998664321 112256789999999996543 2344444444 234568899995
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.31 E-value=1.2e-11 Score=121.20 Aligned_cols=132 Identities=21% Similarity=0.148 Sum_probs=103.5
Q ss_pred CCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHH
Q psy12758 79 ARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELA 158 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~ 158 (308)
.|. .|+++|.-..-.+..|+ |+.+.||+|||+++.+|++-..+..
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G-------------------------------- 116 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG-------------------------------- 116 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS--------------------------------
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC--------------------------------
Confidence 465 69999999999999888 9999999999999999998655433
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCC----------------
Q psy12758 159 TQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGS---------------- 222 (308)
Q Consensus 159 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~---------------- 222 (308)
..+.|++|+++||.|-++++..+....|+++.+++...
T Consensus 117 --------------------------~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~ 170 (822)
T 3jux_A 117 --------------------------KGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKA 170 (822)
T ss_dssp --------------------------SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHH
T ss_pred --------------------------CceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhh
Confidence 45889999999999999999999999999999988721
Q ss_pred --------------------------------chhHhHHhhcCCCeEEEECcHHH-HHHHHcCC------cCCCCCceEE
Q psy12758 223 --------------------------------NVGDQMRDLDRGCHLLVATPGRL-VDMLERGK------IGLANCRFLV 263 (308)
Q Consensus 223 --------------------------------~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~~------~~l~~~~~lV 263 (308)
......+.-.-.|||..||..-| .++|..+- .....+.+.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aI 250 (822)
T 3jux_A 171 IEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAI 250 (822)
T ss_dssp HHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEE
T ss_pred hcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEE
Confidence 00011111122489999999988 56776432 1246788999
Q ss_pred echhhhcc
Q psy12758 264 LDEADRML 271 (308)
Q Consensus 264 iDEad~ll 271 (308)
|||+|.+|
T Consensus 251 VDEvDSiL 258 (822)
T 3jux_A 251 VDEADSVL 258 (822)
T ss_dssp EETHHHHH
T ss_pred Eeccccee
Confidence 99999886
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.23 E-value=1.8e-11 Score=120.24 Aligned_cols=144 Identities=24% Similarity=0.240 Sum_probs=88.0
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchh--HHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKT--AAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKT--la~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
+++|+.+++.++.++++++.+++||||| ++++++.+..+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~----------------------------------- 195 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE----------------------------------- 195 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC-----------------------------------
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC-----------------------------------
Confidence 7999999999999999999999999999 677787776531111
Q ss_pred HHHHHHHhhhcCCccccccccccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECc
Q psy12758 163 DEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 242 (308)
+.++++++||++.+.++.+.+.......++..... .+.. .....+. .++-.+|
T Consensus 196 ---------------------~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~~~--~~~~Tih---~ll~~~~ 248 (608)
T 1w36_D 196 ---------------------RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KRIP--EDASTLH---RLLGAQP 248 (608)
T ss_dssp ---------------------CCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CSCS--CCCBTTT---SCC----
T ss_pred ---------------------CCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hccc--hhhhhhH---hhhccCC
Confidence 14577778888888887777766655444321111 0000 0000010 1222233
Q ss_pred HHHHHHHHcCCcCCCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 243 ~~L~~~l~~~~~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+.. . +.........+++||||||+ |++ .+.+..|+..+ +.+.|++++.
T Consensus 249 ~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l----~~~~~liLvG 296 (608)
T 1w36_D 249 GSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL----PDHARVIFLG 296 (608)
T ss_dssp ---------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC----CTTCEEEEEE
T ss_pred Cch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC----CCCCEEEEEc
Confidence 321 1 11112222378999999999 666 57788888876 4578998875
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.53 E-value=2e-07 Score=92.40 Aligned_cols=69 Identities=30% Similarity=0.373 Sum_probs=53.1
Q ss_pred CCCCCCcHHHHHHHhhHhc----C-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccc
Q psy12758 79 ARYDKPTPVQKYAIPVIIS----G-RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAP 153 (308)
Q Consensus 79 ~~~~~pt~iQ~~~ip~i~~----g-~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~p 153 (308)
.+| .|++.|..+|..+.. | +..++.+.||||||+.+.- ++... . ...||++|
T Consensus 5 ~~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--~-------------------~~~lvv~~ 61 (664)
T 1c4o_A 5 RGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--G-------------------RPALVLAP 61 (664)
T ss_dssp CSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--T-------------------CCEEEEES
T ss_pred CCC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--C-------------------CCEEEEec
Confidence 466 999999999886653 3 2467889999999987643 22322 1 14899999
Q ss_pred chHHHHHHHHHHHHHHh
Q psy12758 154 TRELATQIYDEAKKFAY 170 (308)
Q Consensus 154 t~~l~~q~~~~~~~~~~ 170 (308)
++.++.|++++++.|..
T Consensus 62 ~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 62 NKILAAQLAAEFRELFP 78 (664)
T ss_dssp SHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 99999999999999853
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.25 E-value=4.5e-06 Score=79.03 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=34.8
Q ss_pred HHCCCCCCcHHHHHHHhhHhcC-----CCEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 77 ALARYDKPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 77 ~~~~~~~pt~iQ~~~ip~i~~g-----~d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
.-+.|..+++-|.+++..++.. ..+++.|+.|||||... ..++..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~ 72 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST 72 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc
Confidence 3456778889999999876532 38999999999999643 4555555443
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.24 E-value=6.7e-06 Score=80.02 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=32.7
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
.+++.|.+++..++.++.+++.++.|||||... ..++..+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l 228 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLA 228 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHH
Confidence 578999999999999999999999999999753 3344433
No 86
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.16 E-value=2.9e-06 Score=83.93 Aligned_cols=66 Identities=30% Similarity=0.425 Sum_probs=50.0
Q ss_pred CCcHHHHHHHhhHhc----CC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHH
Q psy12758 83 KPTPVQKYAIPVIIS----GR-DVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTREL 157 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~----g~-d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l 157 (308)
.|+..|..+|..+.. |. ..++.+-||||||+...- ++... . ...||++|++.+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~--~-------------------~~~lvv~~~~~~ 69 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV--N-------------------KPTLVIAHNKTL 69 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--C-------------------CCEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh--C-------------------CCEEEEECCHHH
Confidence 789999888876553 43 467889999999986532 22322 1 147999999999
Q ss_pred HHHHHHHHHHHHh
Q psy12758 158 ATQIYDEAKKFAY 170 (308)
Q Consensus 158 ~~q~~~~~~~~~~ 170 (308)
+.|++++++.|..
T Consensus 70 A~~l~~el~~~~~ 82 (661)
T 2d7d_A 70 AGQLYSEFKEFFP 82 (661)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999954
No 87
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.12 E-value=1.1e-05 Score=79.25 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...++.|.+|+..++.+.-.++.||+|||||.... -++..+.... ..++++.+||+..++++
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~~-----------------~~~ilv~a~tn~A~~~l 240 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQG-----------------NGPVLVCAPSNIAVDQL 240 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTSS-----------------SCCEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHcC-----------------CCeEEEEeCcHHHHHHH
Confidence 45689999999999888889999999999998653 3444444321 24789999999999999
Q ss_pred HHHHHHH
Q psy12758 162 YDEAKKF 168 (308)
Q Consensus 162 ~~~~~~~ 168 (308)
.+.+.+.
T Consensus 241 ~~~l~~~ 247 (624)
T 2gk6_A 241 TEKIHQT 247 (624)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9988764
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2.5e-05 Score=78.88 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...++.|.+|+..++.+.-++|.||+|||||....- ++..+.... ..++++.+||+..++++
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~~-----------------~~~ILv~a~tn~A~d~l 420 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKIH-----------------KDRILVCAPSNVAVDHL 420 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHHH-----------------CCCEEEEESSHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhCC-----------------CCeEEEEcCcHHHHHHH
Confidence 356799999999998877789999999999986543 334443321 14799999999999999
Q ss_pred HHHHHHH
Q psy12758 162 YDEAKKF 168 (308)
Q Consensus 162 ~~~~~~~ 168 (308)
.+++.+.
T Consensus 421 ~~rL~~~ 427 (802)
T 2xzl_A 421 AAKLRDL 427 (802)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9998775
No 89
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.03 E-value=8.2e-06 Score=80.56 Aligned_cols=67 Identities=21% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCcHHHHHHHhhHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRD-VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d-~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...+-|.+|+..++..++ .+|+||+|||||.+..-.+ ..+...+ .++|+.+||+.-++++
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I-~~l~~~~------------------~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII-LQAVKQG------------------LKVLCCAPSNIAVDNL 249 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHH-HHHHHTT------------------CCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHH-HHHHhCC------------------CeEEEEcCchHHHHHH
Confidence 357899999999987765 6899999999998754444 4444432 3799999999999999
Q ss_pred HHHHHHH
Q psy12758 162 YDEAKKF 168 (308)
Q Consensus 162 ~~~~~~~ 168 (308)
.+++...
T Consensus 250 ~erL~~~ 256 (646)
T 4b3f_X 250 VERLALC 256 (646)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 90
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.90 E-value=4.3e-05 Score=77.04 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
..++.|.+|+..++.+.-.++.||+|||||.... -++..+.... ..++++.+||+..++++.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~-----------------~~~ilv~a~tn~A~~~l~ 417 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQG-----------------NGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTTC-----------------SSCEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHcC-----------------CCcEEEEcCcHHHHHHHH
Confidence 4689999999999888889999999999998643 4444444321 247899999999999999
Q ss_pred HHHHHH
Q psy12758 163 DEAKKF 168 (308)
Q Consensus 163 ~~~~~~ 168 (308)
+.+.+.
T Consensus 418 ~~l~~~ 423 (800)
T 2wjy_A 418 EKIHQT 423 (800)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988764
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.63 E-value=0.00051 Score=63.30 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~ 204 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHH
Confidence 789999999987765677899999999999987666665443
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.37 E-value=0.0011 Score=53.89 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+.+++.+|+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4789999999999999754
No 93
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.26 E-value=0.0044 Score=60.37 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
.++++|...+..+...+-+++..+-|+|||.+....++..+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~ 204 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHH
Confidence 479999999987755678999999999999987655555544
No 94
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.68 E-value=0.0016 Score=56.82 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=32.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHH-HHHHhh--HhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQ-KYAIPV--IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ-~~~ip~--i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|+++.-.+..++.|.+.- .. +.+ .+.+.. +..++.+++.+|+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVV-EL--PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHT-HH--HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-HH--HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 57999988887877776431 10 100 111111 234578999999999999754
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.64 E-value=0.0037 Score=49.53 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+.+++.+++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999743
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.50 E-value=0.0059 Score=59.78 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
...++-|.+++.. .+..++|.|+.|||||...+-=+...+...+ ....+++++++|+..+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~---------------~~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN---------------CSPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC---------------CCGGGEEEEESSHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC---------------CChhhEEEEeccHHHHHHH
Confidence 4678999999973 3568999999999999876555554443321 1234789999999999999
Q ss_pred HHHHHHHH
Q psy12758 162 YDEAKKFA 169 (308)
Q Consensus 162 ~~~~~~~~ 169 (308)
.+++.+..
T Consensus 71 ~~rl~~~~ 78 (647)
T 3lfu_A 71 RHRIGQLM 78 (647)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 97
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.47 E-value=0.006 Score=57.00 Aligned_cols=72 Identities=24% Similarity=0.249 Sum_probs=38.9
Q ss_pred cccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEEech
Q psy12758 187 GLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDE 266 (308)
Q Consensus 187 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViDE 266 (308)
.+|++||++++..+.+.+...... ...+.-|.|-+.++ ++......-..++|||||
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~~~~~----------------------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE 242 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANASGII----------------------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDE 242 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTTTSCC----------------------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEET
T ss_pred eEEEeCCHHHHHHHHHHhhhcCcc----------------------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeC
Confidence 578888888887776665332100 00112255654432 122222223578999999
Q ss_pred hhhcccCCCHHHHHHHHHhc
Q psy12758 267 ADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 267 ad~ll~~~f~~~l~~i~~~l 286 (308)
|- |++. ..+..++..+
T Consensus 243 ~s-m~~~---~~l~~l~~~~ 258 (446)
T 3vkw_A 243 GL-MLHT---GCVNFLVEMS 258 (446)
T ss_dssp GG-GSCH---HHHHHHHHHT
T ss_pred cc-cCCH---HHHHHHHHhC
Confidence 97 5553 4555555543
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.021 Score=51.14 Aligned_cols=42 Identities=5% Similarity=0.141 Sum_probs=25.3
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
..-++||||+|.+.+ .+.+..+++.... .....-+|+.++|+
T Consensus 132 ~~~ii~lDE~d~l~~---q~~L~~l~~~~~~-~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 132 RKTLILIQNPENLLS---EKILQYFEKWISS-KNSKLSIICVGGHN 173 (318)
T ss_dssp CEEEEEEECCSSSCC---THHHHHHHHHHHC-SSCCEEEEEECCSS
T ss_pred CceEEEEecHHHhhc---chHHHHHHhcccc-cCCcEEEEEEecCc
Confidence 445799999999983 2455556653211 12234566667775
No 99
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.40 E-value=0.023 Score=49.19 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=26.5
Q ss_pred CCceEEechhhhcccC-----C-CHHHHHHHHHhcCCCCCCCceEEEEeecC
Q psy12758 258 NCRFLVLDEADRMLDM-----G-FEPQIRCIVQENGMPRTGDRQTLMFSATF 303 (308)
Q Consensus 258 ~~~~lViDEad~ll~~-----~-f~~~l~~i~~~l~~~~~~~~q~i~~SATl 303 (308)
...+|+|||+|.|+.. . -...++.+...+....+...+++++.+|-
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn 175 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC
Confidence 3568999999998532 1 23334444454433333455676666664
No 100
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.35 E-value=0.031 Score=50.12 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.8
Q ss_pred cHHHHHHHhhHh----cCC---CEEEEccCCCchhHHhH
Q psy12758 85 TPVQKYAIPVII----SGR---DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 85 t~iQ~~~ip~i~----~g~---d~lv~a~TGsGKTla~l 116 (308)
.|+|.+++..+. +|+ -+++.||.|+|||....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 577777765544 443 48999999999998654
No 101
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.25 E-value=0.012 Score=52.34 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCC--C-EEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGR--D-VMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~--d-~lv~a~TGsGKTla~ 115 (308)
.|.+|+++--.+.+.+.|... +..|+ + +++.+|+|+|||...
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~---------------l~~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSI---------------TSKGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHH---------------HHTTCCCSEEEECSSTTSSHHHHH
T ss_pred CCCCHHHHhCcHHHHHHHHHH---------------HHcCCCCeEEEeeCcCCCCHHHHH
Confidence 367899998888777666421 11232 3 466667999999864
No 102
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.22 E-value=0.018 Score=51.28 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++.+++.+|+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999754
No 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.079 Score=43.35 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=27.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh--cCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~--~g~d~lv~a~TGsGKTla~ 115 (308)
|.+|+++.-.+..++.|... +. ....+++.+++|+|||...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGY---------------VERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHH---------------HHTTCCCCEEEECSTTSSHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHH---------------HhCCCCCeEEEECCCCCCHHHHH
Confidence 45777776566555555321 11 2246999999999999753
No 104
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.19 E-value=0.056 Score=48.16 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh----cCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII----SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~----~g~d~lv~a~TGsGKTla~ 115 (308)
|.+|+++.-.+.+++.+.. .+.... ...++++.+++|+|||...
T Consensus 25 p~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5689998777777776642 121221 2258999999999999854
No 105
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.00 E-value=0.0085 Score=53.54 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh-----cCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII-----SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~-----~g~d~lv~a~TGsGKTla~ 115 (308)
.+|+++.-.+.+++.|.+.=. .+. ..|.+. ..+.+++.+|+|+|||...
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 579999888888888865311 011 112221 2367999999999999854
No 106
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.00 E-value=0.0087 Score=50.25 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.++.+++.+|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.98 E-value=0.012 Score=58.17 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=53.5
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
.+++-|.+++... +..++|.|+.|||||.+..-=+...+...+ ....++++++.|+..+.++.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~---------------~~~~~IL~lTfT~~Aa~em~ 64 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG---------------YQARHIAAVTFTNKAAREMK 64 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC---------------CCGGGEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC---------------CCHHHeEEEeccHHHHHHHH
Confidence 4689999999753 678999999999999976655555554422 11247899999999999999
Q ss_pred HHHHHH
Q psy12758 163 DEAKKF 168 (308)
Q Consensus 163 ~~~~~~ 168 (308)
+++.+.
T Consensus 65 ~Rl~~~ 70 (673)
T 1uaa_A 65 ERVGQT 70 (673)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 108
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.038 Score=49.51 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
|.+|+++--.+.+.+.|...-+.. -...++++.+|+|+|||...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 568999877888888776542111 12235999999999999854
No 109
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.93 E-value=0.021 Score=48.83 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=30.6
Q ss_pred CCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~--~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|+++.-.+.+++.|.+.- +..|..+.... +...+.+++.+|+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 47888877777777775420 11121111111 123468999999999999754
No 110
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.91 E-value=0.038 Score=51.66 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++.+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999754
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.89 E-value=0.018 Score=57.33 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHH
Q psy12758 82 DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQI 161 (308)
Q Consensus 82 ~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~ 161 (308)
..+++-|.+++.. .+..++|.|+.|||||.+..-=+...+...+ ....++++++.|+..+.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~---------------~~p~~IL~vTFTnkAA~Em 72 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH---------------VAPWNILAITFTNKAAREM 72 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC---------------CCGGGEEEEESSHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC---------------CCHHHeEEEeccHHHHHHH
Confidence 4679999999876 3568999999999999876555555443321 1234789999999999999
Q ss_pred HHHHHHHH
Q psy12758 162 YDEAKKFA 169 (308)
Q Consensus 162 ~~~~~~~~ 169 (308)
.+++.+..
T Consensus 73 ~~Rl~~~l 80 (724)
T 1pjr_A 73 RERVQSLL 80 (724)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.81 E-value=0.014 Score=61.65 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHH
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIY 162 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~ 162 (308)
+.|+-|.++|..- +++++|.|..|||||.+.+-=++..+..... +....++++++.|+..+..+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-------------~~~~~~il~~Tft~~aa~e~~ 74 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-------------PIDVDRLLVVTFTNASAAEMK 74 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-------------CCCGGGEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-------------CCCccceEEEeccHHHHHHHH
Confidence 5799999999764 8899999999999999876666666543210 112357899999999999999
Q ss_pred HHHHHH
Q psy12758 163 DEAKKF 168 (308)
Q Consensus 163 ~~~~~~ 168 (308)
+++.+.
T Consensus 75 ~ri~~~ 80 (1232)
T 3u4q_A 75 HRIAEA 80 (1232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888774
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.79 E-value=0.03 Score=50.54 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.++.+++.+|+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3478999999999999754
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.72 E-value=0.023 Score=55.74 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHH
Q psy12758 83 KPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpi 119 (308)
.+|.-|.+++..+..- .-.++.|.-|.|||.+.-+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~ 213 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI 213 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH
Confidence 6789999999887762 357999999999996654443
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.72 E-value=0.015 Score=47.59 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|+=.++.++.|+|||...+-
T Consensus 3 g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHH
Confidence 55578999999999987543
No 116
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.03 Score=53.44 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCCCccCCCCCHHHHHHHHHC----------CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 59 LPPQFDDIQMTEIITNNIALA----------RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~----------~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
.|.+|+++.-.+..++.|... ||..+-. ...-..+.+++.+|+|+|||....
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~------~~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGK------DGSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT------TSTTSCSEEEEECSTTSSHHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCc------cCCCCCcEEEEECCCCCCHHHHHH
Confidence 467899988777776666432 2221100 000023689999999999998653
No 117
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.67 E-value=0.12 Score=43.70 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=21.5
Q ss_pred EEECcHHHHHHHHcCCcCCCCCceEEechhhhc
Q psy12758 238 LVATPGRLVDMLERGKIGLANCRFLVLDEADRM 270 (308)
Q Consensus 238 lV~TP~~L~~~l~~~~~~l~~~~~lViDEad~l 270 (308)
.+.+...+...+..... -.+.++||||||+.+
T Consensus 70 ~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp EESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred ccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 35566667776665322 245789999999964
No 118
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.44 E-value=0.036 Score=45.74 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llp 118 (308)
|+=.++.++.|+|||.+.+--
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHH
Confidence 455688999999999875533
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.35 E-value=0.033 Score=48.95 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.++++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 120
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.33 E-value=0.042 Score=51.39 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHH-HHh-hHhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKY-AIP-VIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~-~ip-~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+|++++=.+.+.+.|...-. .|+... .+. .....+.+++.+|+|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4689999777777777754310 011100 000 1122378999999999999754
No 121
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.097 Score=45.99 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=28.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~ 115 (308)
.|.+|+++.-.+.+++.|... +..| .++++.||+|+|||...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHY---------------VKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHH---------------HHHTCCCEEEEESCTTSSHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHH---------------HHcCCCCeEEEECcCCCCHHHHH
Confidence 456788876666666655431 1223 36999999999999754
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.30 E-value=0.05 Score=45.01 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
|+=.++.++.|+|||.-.+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp CEEEEEEECTTSCHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 5667899999999996433
No 123
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.27 E-value=0.1 Score=42.72 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=54.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+.+.++.. ++.+..++|+.+..++...+ ....+|+|+| +.+. ..+++.+++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCC
Confidence 56999999999999999888765 57888999998776655443 3468899999 3444 446788888
Q ss_pred eEEec
Q psy12758 261 FLVLD 265 (308)
Q Consensus 261 ~lViD 265 (308)
++|.=
T Consensus 125 ~VI~~ 129 (191)
T 2p6n_A 125 HVINY 129 (191)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88763
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.14 E-value=0.022 Score=47.98 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=18.4
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHH
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIV 283 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~ 283 (308)
.+.++|+||||+.+ +....+++..+.
T Consensus 100 ~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 100 TNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp TTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred cCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 46789999999954 444556666665
No 125
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.11 E-value=0.048 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPIL 120 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil 120 (308)
|+=.++.++.|+|||.+.+--+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~ 50 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR 50 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34346788889999987554433
No 126
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.82 E-value=0.32 Score=38.36 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=54.6
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+.+.+... ++.+..++|+.+..+....+ ....+|+|+|. . ....+++.+++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcCC
Confidence 57899999999999999888775 67888999998776554433 34578999994 2 33456788888
Q ss_pred eEEech
Q psy12758 261 FLVLDE 266 (308)
Q Consensus 261 ~lViDE 266 (308)
++|.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 127
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.78 E-value=0.068 Score=47.41 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++++++.+|+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 579999999999999754
No 128
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.77 E-value=0.43 Score=42.70 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ 115 (308)
|.+|+++--.+.+++.|... +..+ +-+++.|++|+|||...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~---------------l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHH---------------HHHTCCCSEEEEESCTTSSHHHHH
T ss_pred CCchhhccCcHHHHHHHHHH---------------HHhCCCCeEEEEECCCCCCHHHHH
Confidence 45787776566666655431 1122 34799999999999764
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.56 E-value=0.077 Score=47.93 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999754
No 130
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.51 E-value=0.13 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPIL 120 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil 120 (308)
.|+=.++.++.|+|||.+.+--+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~ 41 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVR 41 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH
Confidence 355567788889999987554443
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.39 E-value=0.15 Score=45.91 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.24 E-value=0.049 Score=49.02 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++.+++.+++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999854
No 133
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=93.29 E-value=0.31 Score=40.43 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=54.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++-+..+.+.+... ++.+..++|+.+...+...+ ....+|+|+|. +....+++.+++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccCc
Confidence 57999999999999998888775 67888999998877665444 34578999994 233557788888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8773
No 134
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.06 E-value=0.35 Score=38.20 Aligned_cols=71 Identities=8% Similarity=0.181 Sum_probs=53.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+...++.. ++.+..++|+.+..++...+ ....+|+|+|. . ....+++.+++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccCC
Confidence 57999999999999998888764 57788899998776654433 34678999994 2 33456677888
Q ss_pred eEEec
Q psy12758 261 FLVLD 265 (308)
Q Consensus 261 ~lViD 265 (308)
++|.-
T Consensus 101 ~Vi~~ 105 (165)
T 1fuk_A 101 LVINY 105 (165)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 87754
No 135
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.00 E-value=0.51 Score=37.68 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=53.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.+... ++.+..++|+.....+...+ ....+|+|+|. +....+++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhCC
Confidence 57999999999999999888775 67888899998776654433 34679999995 223446677788
Q ss_pred eEEec
Q psy12758 261 FLVLD 265 (308)
Q Consensus 261 ~lViD 265 (308)
++|.-
T Consensus 102 ~Vi~~ 106 (172)
T 1t5i_A 102 IAFNY 106 (172)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 87753
No 136
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.96 E-value=0.89 Score=44.63 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=65.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.++|+..+..+.+.++.. ++++..++|+.....+...+ ....+|+|||- +-...+++.+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCCC
Confidence 57999999999999998888775 57788889887766555443 24589999995 234557788999
Q ss_pred eEEechhhhcccCCCHHHHHHHHHhcC
Q psy12758 261 FLVLDEADRMLDMGFEPQIRCIVQENG 287 (308)
Q Consensus 261 ~lViDEad~ll~~~f~~~l~~i~~~l~ 287 (308)
++|+-++|...-..-...+.+.+.+..
T Consensus 516 lVi~~d~d~~G~p~s~~~~iQr~GRag 542 (661)
T 2d7d_A 516 LVAILDADKEGFLRSERSLIQTIGRAA 542 (661)
T ss_dssp EEEETTTTCCTTTTSHHHHHHHHHTTT
T ss_pred EEEEeCcccccCCCCHHHHHHHhCccc
Confidence 999999986532222333444444443
No 137
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.82 E-value=0.33 Score=45.15 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
+-+++.+++|+|||....
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997653
No 138
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.59 E-value=0.29 Score=39.14 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=53.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..++..+... ++.+..++|+.+..++...+ ....+|+|+|. +....+++..++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCC
Confidence 57999999999999998888764 67888999998876655443 34678999994 233456788888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 139
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.52 E-value=0.38 Score=38.96 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=44.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.++++..+..+.+.++.. ++.+..++|+.+..++...+ ....+|||+|. .+ ...+++.+++
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~~ 116 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISNVK 116 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBS
T ss_pred CeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCcccCC
Confidence 67999999999999998888764 67888899987655443332 34678999994 22 3445677888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.09 E-value=0.41 Score=40.02 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpi 119 (308)
.|.-+++.+++|+|||...+--+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46778999999999998644333
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.06 E-value=0.12 Score=40.13 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=17.4
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
...+.++++.+++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 445689999999999999753
No 142
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.98 E-value=0.3 Score=40.37 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=17.0
Q ss_pred hcCCCEEEEccCCCchhHHhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~ll 117 (308)
..|.-+++.+++|+|||.....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHH
Confidence 3467789999999999975433
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.86 E-value=0.34 Score=45.24 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
.|.-+++.|++|+|||...+--+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999755444433
No 144
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.71 E-value=0.15 Score=39.62 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=17.7
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
...+.++++.+++|||||...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346689999999999999865
No 145
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.54 E-value=0.93 Score=41.81 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=54.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||.++++.-+..+++.+... ++.+..++|+....++...+ ....+|||+|. +-...+++.+++
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~ 370 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIK 370 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCC
Confidence 34899999999999998888764 67888999998876655443 34678999995 334567788999
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 146
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.37 E-value=0.99 Score=39.72 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=53.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++-+..+++.+... ++.+..++|+.....+...+ ....+|+|+|. +....+++.+++
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v~ 98 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQVD 98 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCcccccee
Confidence 57999999999999888877654 68889999998877665544 34678999994 233457788888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.19 E-value=0.16 Score=42.70 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=19.0
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHH
Q psy12758 95 IISGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~llpi 119 (308)
+..|.-+.+.+|+|+|||.....-+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3456789999999999998654433
No 148
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.09 E-value=1.3 Score=39.77 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=54.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.+... ++.+..++|+....++...+ ....+|+|+|. +-...+++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCC
Confidence 56999999999999999988875 57788999998876655443 34678999995 334557788898
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 149
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.89 E-value=0.44 Score=45.68 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999754
No 150
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.43 E-value=2.1 Score=38.10 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=57.2
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+....++...+ ....+|+|+|. +-...+++.+++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 313 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVS 313 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCC
Confidence 56899999999999999888775 57788999998776554433 34578999995 334567788999
Q ss_pred eEEechhhh
Q psy12758 261 FLVLDEADR 269 (308)
Q Consensus 261 ~lViDEad~ 269 (308)
++|.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 988755543
No 151
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.35 E-value=2.1 Score=42.00 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh---c-CCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL---D-RGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.++|+..+..+.+.+... ++++..++|+.....+...+ . ...+|+|||- . -...+++.+++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~-l~~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----L-LREGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----C-CCTTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----h-hhcCccCCCCC
Confidence 57999999999999998888775 57788888887766554443 2 4589999994 2 24557788999
Q ss_pred eEEechhhhc
Q psy12758 261 FLVLDEADRM 270 (308)
Q Consensus 261 ~lViDEad~l 270 (308)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9998888765
No 152
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.17 E-value=0.13 Score=47.92 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=35.9
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++.+-.+...+.|.+. -+.+|--++...++ -.+.+++.+|+|||||+..
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 6899999888888887643 12244333333222 2478999999999999854
No 153
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.45 E-value=3.5 Score=39.10 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=56.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.++|+.-+..+++.++.... .++.+..++|+.....+...+ ....+|||||. +-...+++.+++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v~ 412 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNVH 412 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTCC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCcccCC
Confidence 5689999999999999988887643 357788899998876655443 35689999995 333557788888
Q ss_pred eEEech
Q psy12758 261 FLVLDE 266 (308)
Q Consensus 261 ~lViDE 266 (308)
++|.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887543
No 154
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.00 E-value=2.5 Score=37.71 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=54.7
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+....++...+ ....+|+|+|. .-...+++.+++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCcccCC
Confidence 57999999999999999888764 57788899998766554433 34678999994 223457788888
Q ss_pred eEEechh
Q psy12758 261 FLVLDEA 267 (308)
Q Consensus 261 ~lViDEa 267 (308)
++|.-+.
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8886543
No 155
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.81 E-value=1.2 Score=40.37 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=53.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+....++...+ ....+|+|+|. .+. ..+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v~ 346 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNVK 346 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccCC
Confidence 56999999999999999888764 67888999998876654433 34678999994 444 456788888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.70 E-value=0.2 Score=46.10 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++.|=-+..++.|.+. -+.+|--++...+ .-.+.+++.+|+|||||+..
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 6899987666677777543 1122322222221 12379999999999999854
No 157
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.69 E-value=0.5 Score=41.94 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhc-----CCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIIS-----GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~-----g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++=.+.+++.|.+.= . .|.+ .|.+.. .+.+++.+|+|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 58999987777777775421 0 0111 122222 368999999999999754
No 158
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.62 E-value=2.4 Score=37.20 Aligned_cols=71 Identities=14% Similarity=0.273 Sum_probs=52.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+.+...+...+ ....+|+|+|. .+.. .+++.+++
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~~ 308 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDLN 308 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccCC
Confidence 56899999999999999888775 57788899988766554333 34678999994 3332 35677888
Q ss_pred eEEec
Q psy12758 261 FLVLD 265 (308)
Q Consensus 261 ~lViD 265 (308)
++|.-
T Consensus 309 ~Vi~~ 313 (367)
T 1hv8_A 309 CVINY 313 (367)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88754
No 159
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.56 E-value=0.18 Score=44.39 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=32.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHh-hHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIP-VIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip-~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++-.+.+++.|.+.- ..|-........ .+..++.+++.+|+|+|||+..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 57999987777777775420 000000000011 1234578999999999999854
No 160
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.43 E-value=0.15 Score=44.48 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=32.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHHHhhH-hcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQ-KYAIPVI-ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ-~~~ip~i-~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+|+++.=.+..++.|.+.- .. +.. .+.+..+ ..++.+++.+|+|+|||...
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i-~~--~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMV-IL--PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHT-HH--HHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-Hh--hhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 357999877777777775431 00 000 0000011 13578999999999999854
No 161
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.33 E-value=0.3 Score=45.14 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=33.2
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHH
Q psy12758 96 ISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q 160 (308)
....++++.|+||||||... -.++..++..+ ..++|+-|..++...
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g------------------~~viv~Dpkge~~~~ 96 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLL-RELAYTGLLRG------------------DRMVIVDPNGDMLSK 96 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHHTT------------------CEEEEEEETTHHHHH
T ss_pred cCcceEEEECCCCCCHHHHH-HHHHHHHHHCC------------------CcEEEEeCCCchhHH
Confidence 34579999999999999974 44555554432 357888888888653
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.92 E-value=0.47 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++.+++.+++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999754
No 163
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.86 E-value=5.1 Score=38.26 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.++|+..+..+++.++.... .++.+..++|+.....+...+ ....+|||||. . -...+++.+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~-~~~GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-hhcCCCcccCC
Confidence 5689999999999999998887643 357788899998876654443 34689999995 3 33457788898
Q ss_pred eEEech
Q psy12758 261 FLVLDE 266 (308)
Q Consensus 261 ~lViDE 266 (308)
++|.-.
T Consensus 362 ~VI~~~ 367 (579)
T 3sqw_A 362 EVLQIG 367 (579)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 888544
No 164
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.82 E-value=2 Score=39.76 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=17.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
.|.=+++.|++|+|||...+--+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456799999999999754443333
No 165
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.56 E-value=0.53 Score=39.93 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~--~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+|+++.-.+.+++.|.+.- +..|..++... ....+.+++.+|+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 357999987787777765420 11111111100 111357999999999999754
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.26 E-value=0.76 Score=40.23 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
|.+|+++--.+..++.|... ++.. ...-...+.+++.+++|+|||...
T Consensus 8 p~~~~~~ig~~~~~~~l~~~-------l~~~-~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVY-------LEAA-KARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHH-------HHHH-HHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cccHHHhhCHHHHHHHHHHH-------HHHH-HccCCCCCcEEEECCCCCCHHHHH
Confidence 45788876666666665421 1100 000012378999999999999754
No 167
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=87.25 E-value=3.2 Score=38.37 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=46.1
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEE
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGKIGLANCRFLV 263 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lV 263 (308)
.+++|.||+++-+..+++.++.. ++++..++|... ....+.. ....+|||+|. . -...+++. ++++|
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v-~e~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----I-AEMGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C--------CCCSEEEESS-----S-TTCCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----h-hheeeccC-ceEEE
Confidence 67999999999999999988875 577888888432 2222333 34579999995 2 33456677 88876
No 168
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.22 E-value=0.25 Score=46.27 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCccCCCCCHHHHHHHHHCC---CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALAR---YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~---~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++.+=-+.+++.|.+.= +.+|--++..- +.-.+.+++.+|+|||||+..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 68999987777888776531 12222222211 112479999999999999754
No 169
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.13 E-value=1.6 Score=41.43 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=53.2
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
..+||.++|++-+..+++.++.. ++.+..++|+.+.......+ ....+|+|+|. .-...+++.+++
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~ 306 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVR 306 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCcc
Confidence 56899999999999999988775 67888899998876554332 34689999995 223456677888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 307 ~VI~ 310 (523)
T 1oyw_A 307 FVVH 310 (523)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 170
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.11 E-value=1.2 Score=38.43 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHCCCCCCcHHHHH-HHhhHhcCC-----CEEEEccCCCchhHHhH
Q psy12758 71 IITNNIALARYDKPTPVQKY-AIPVIISGR-----DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 71 ~l~~~L~~~~~~~pt~iQ~~-~ip~i~~g~-----d~lv~a~TGsGKTla~l 116 (308)
.+.+-|+.+||. +++.. ++..++.|+ .+++.+|.|||||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888889986 66633 355666653 49999999999998765
No 171
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=86.93 E-value=0.12 Score=41.25 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=48.2
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+.+.++.. ++.+..++|+.........+ ....+|||+|. .+. ..+++.+++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~~ 100 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDVS 100 (170)
Confidence 57899999999999988888765 56778888887665544333 23568999993 222 334455666
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 101 ~Vi~ 104 (170)
T 2yjt_D 101 HVFN 104 (170)
Confidence 6654
No 172
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.79 E-value=0.83 Score=43.28 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 72 ITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 72 l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+...+. ..+..-..+=..++-.+..|.++++.+|+|+|||...
T Consensus 16 l~~~l~-~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLE-KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHH-TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHH-hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344444 3454444555566667788999999999999999753
No 173
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.74 E-value=2.5 Score=39.82 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=32.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 169 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~ 169 (308)
.|....+.+-||||||+...- ++.. .. ...+|++++...+.++++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~---~~------------------~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER---HA------------------GPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH---SS------------------SCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH---hC------------------CCEEEEeCCHHHHHHHHHHHHhhC
Confidence 456788999999999975322 1111 11 135677777777777777776653
No 174
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.67 E-value=0.9 Score=40.81 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.++++++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999854
No 175
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.45 E-value=0.66 Score=44.11 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=25.1
Q ss_pred HHHHHCCCCCCcHHHHHHHh-hHhcCCCEEEEccCCCchhHH
Q psy12758 74 NNIALARYDKPTPVQKYAIP-VIISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 74 ~~L~~~~~~~pt~iQ~~~ip-~i~~g~d~lv~a~TGsGKTla 114 (308)
..|.+.|.- ++.+..-+. .+..|..+++.+|||||||..
T Consensus 237 ~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 334455532 233333333 355788999999999999974
No 176
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.35 E-value=8.7 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 99 RDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~llpil~~l 123 (308)
..+++..++|.|||.+.+--++..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999877666654
No 177
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.10 E-value=1.8 Score=39.09 Aligned_cols=70 Identities=6% Similarity=0.154 Sum_probs=53.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+....++...+ ....+|+|+|. +-...+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 46899999999999988888764 57788899998876554433 34678999995 334557788888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.05 E-value=4.9 Score=37.34 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
.-+++.+++|+|||....
T Consensus 101 ~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 457899999999998653
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.83 E-value=0.9 Score=41.06 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=26.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+++++++++++.+.+ + ....+.-+++.+|||||||...
T Consensus 102 ~~~~l~~lg~~~~l~~-----------------l-~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 102 KVLTMEELGMGEVFKR-----------------V-SDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SCCCTTTTTCCHHHHH-----------------H-HHCSSEEEEEECSTTSCHHHHH
T ss_pred CCCCHHHcCChHHHHH-----------------H-HhCCCCEEEEECCCCCCHHHHH
Confidence 4578899998763321 1 2234557899999999999753
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.67 E-value=0.56 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
.+.+++.+++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999754
No 181
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=85.67 E-value=1.7 Score=42.05 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=53.8
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCC
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANC 259 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~ 259 (308)
...+||.|+|+.-+.++++.++.. ++.+..++|+.+...+...+ ....+|||+|- .....+++.++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCcccc
Confidence 357899999999999999988774 67888999998876654433 34678999994 22345667788
Q ss_pred ceEEe
Q psy12758 260 RFLVL 264 (308)
Q Consensus 260 ~~lVi 264 (308)
+++|.
T Consensus 337 ~~VI~ 341 (591)
T 2v1x_A 337 RFVIH 341 (591)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88773
No 182
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=85.54 E-value=0.69 Score=37.67 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=30.0
Q ss_pred CcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 84 PTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 84 pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
.++-|..++..++.. +-.++.+.-|++||...+--++....+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~ 78 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE 78 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh
Confidence 346688888888654 457788999999999875555544433
No 183
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=85.52 E-value=1.9 Score=38.77 Aligned_cols=70 Identities=6% Similarity=0.067 Sum_probs=52.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+....++...+ ....+|+|+|. +-...+++.+++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 57999999999999999988875 57788899998776554433 34578999994 223446677888
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 184
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.21 E-value=1.1 Score=40.72 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ll 117 (308)
.|.-+++.+++|+|||...+-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~ 93 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA 93 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 356789999999999975443
No 185
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.58 E-value=0.74 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.8
Q ss_pred hcCCCEEEEccCCCchhHHh
Q psy12758 96 ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~ 115 (308)
..+..+++.+++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34679999999999999754
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.53 E-value=0.19 Score=45.38 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=31.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHh-----cCCCEEEEccCCCchhHHhH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVII-----SGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~-----~g~d~lv~a~TGsGKTla~l 116 (308)
+.+|++++-.+.+++.|...= .. + .-.|.++ ..+.+++.+|+|+|||+..-
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v-~~--~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAV-IL--P---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHT-HH--H---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HH--H---HhCHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 368999876666777765431 00 0 0111222 23689999999999998643
No 187
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=84.53 E-value=6.4 Score=36.39 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=47.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEE
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGKIGLANCRFLV 263 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lV 263 (308)
.++||.+++++-+.++++.++.. ++++..++|.... ...+.+ ....+|||+|. .+ ...+++.. +++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEEE
Confidence 47999999999999999888764 5777888876543 222333 34679999994 33 34566777 6665
No 188
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.52 E-value=1.2 Score=46.73 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.+++|++++++-+..+++.++... .+.++..++|+.+..+..+.+ ....+|||||. +-...+++.+++
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~v~ 884 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTAN 884 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccCCc
Confidence 678999999999999999888763 356788899998766554333 34689999995 334557789999
Q ss_pred eEEechhhhcccCCCHHHHHHHHHhcC
Q psy12758 261 FLVLDEADRMLDMGFEPQIRCIVQENG 287 (308)
Q Consensus 261 ~lViDEad~ll~~~f~~~l~~i~~~l~ 287 (308)
++|+..+|.+ + ..++.+...+..
T Consensus 885 ~VIi~~~~~~---~-l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 885 TIIIERADHF---G-LAQLHQLRGRVG 907 (1151)
T ss_dssp EEEETTTTSS---C-HHHHHHHHTTCC
T ss_pred EEEEeCCCCC---C-HHHHHHHHhccC
Confidence 9998888753 2 234455555543
No 189
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.32 E-value=0.9 Score=42.00 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla 114 (308)
+.++++++++......|.. + ....|.-+++.+|||||||..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~------------l--~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRR------------L--IKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHH------------H--HTSSSEEEEEECSTTSCHHHH
T ss_pred CCCHHHcCCCHHHHHHHHH------------H--HHhcCCeEEEECCCCCCHHHH
Confidence 4567777776654333321 1 112445689999999999974
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.27 E-value=0.28 Score=44.72 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh-HhcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPV-IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~-i~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+|+++.=.+.+++.|...-. .|.. ..+.+.. ....+.+++.+|+|+|||...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVI-LPSL-RPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH-HHHH-CTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHH-Hhcc-CHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4678888767777776654310 0000 0000000 113478999999999999865
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.22 E-value=0.77 Score=41.02 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=28.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
+|+++--.+...+++... ...+-.....++.+++.+|+|+|||...-
T Consensus 42 ~~~~ivG~~~~~~~l~~l--------~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVV--------LEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp EETTEESCHHHHHHHHHH--------HHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred chhhccChHHHHHHHHHH--------HHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 388876666666655321 11111111224689999999999998643
No 192
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.15 E-value=0.8 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+.+++.+++|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999854
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.01 E-value=1.3 Score=36.14 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=26.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC---CCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG---RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g---~d~lv~a~TGsGKTla~ 115 (308)
|..|+++--.+..++.|... +..+ +.+++.+++|+|||...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHH---------------HHHTCCCSEEEEECSTTSCHHHHH
T ss_pred CccHHHHhCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHH
Confidence 45677776566666555321 1123 36899999999999754
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.82 E-value=1.4 Score=39.66 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHH-HHh-hHhcCCCEEEEccCCCchhHHhH
Q psy12758 60 PPQFDDIQMTEIITNNIALARYDKPTPVQKY-AIP-VIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~-~ip-~i~~g~d~lv~a~TGsGKTla~l 116 (308)
+.+|+++.=.+.+++.|.+.= . .+.... .+. .....+.+++.+|+|+|||...-
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIV-V--WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHT-H--HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-H--HHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 456777765666666654321 0 000000 000 11234789999999999998653
No 195
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.78 E-value=0.6 Score=41.34 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~ 115 (308)
.|.+|+++.-.+.+++.|... +..+ .++++.+|+|+|||...
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKT---------------LKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHH---------------TTCTTCCCEEEECSTTSSHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHH---------------HhcCCCCEEEEECCCCCCHHHHH
Confidence 467888876555555555432 2223 46999999999999764
No 196
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.76 E-value=2.2 Score=36.76 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++.+++.+|+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 197
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.52 E-value=5.1 Score=36.34 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=51.7
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec--------CCchhHhHHhh----cCCCeEEEECcHHHHHHHHcC
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG--------GSNVGDQMRDL----DRGCHLLVATPGRLVDMLERG 252 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~ 252 (308)
.++||.+++++.+..+.+.++.. ++++..++| +.+..++...+ ...++|||+|. . -..
T Consensus 362 ~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~-~~~ 431 (494)
T 1wp9_A 362 SKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----V-GEE 431 (494)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----G-GGG
T ss_pred CeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----c-ccc
Confidence 67999999999999988888776 678888888 55554443332 34578999994 2 334
Q ss_pred CcCCCCCceEEechhh
Q psy12758 253 KIGLANCRFLVLDEAD 268 (308)
Q Consensus 253 ~~~l~~~~~lViDEad 268 (308)
.+++..++++|+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 5678888888865443
No 198
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.52 E-value=0.85 Score=40.26 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 89 KYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 89 ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
..+.-.+..++++++.+|+|+|||...
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 344445567899999999999999754
No 199
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.37 E-value=0.79 Score=50.44 Aligned_cols=24 Identities=38% Similarity=0.322 Sum_probs=19.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~ 121 (308)
|+.+++.+|+|+|||...+-.+.+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999876544443
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.31 E-value=1.4 Score=36.49 Aligned_cols=33 Identities=30% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 83 ~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
--+.-|..++..+..|.-+.+.+|+|+|||..+
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 334556778888888998999999999999754
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.25 E-value=1.6 Score=39.03 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=17.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
.|.=+++.|++|+|||...+--+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456899999999999755443333
No 202
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.25 E-value=0.26 Score=42.82 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=27.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHH-HHHHhhH--hcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQ-KYAIPVI--ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ-~~~ip~i--~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++-.+.+.+.|.+.= . .|+. ..++..+ .-.+.+++.+|+|+|||...
T Consensus 7 ~~~~di~g~~~~~~~l~~~i-~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI-L--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHH-T--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 57999988888888776531 1 1111 1122111 11245999999999999754
No 203
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.33 E-value=0.44 Score=44.36 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=32.8
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++.+=-+..++.|.+. -+.+|--++...+ .-.+.+++.+|+|||||+..
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 6899998666676666542 1122222222211 12378999999999999864
No 204
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.28 E-value=0.42 Score=40.53 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhhHh--cCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~--~~~pt~iQ~~~ip~i~--~g~d~lv~a~TGsGKTla~ 115 (308)
.+|+++.-.+.....+...- |..+ .++..+- -.+.+++.+|+|+|||...
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 58999877777766665431 1111 1221111 1245999999999999754
No 205
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.94 E-value=0.84 Score=38.27 Aligned_cols=25 Identities=44% Similarity=0.557 Sum_probs=22.2
Q ss_pred cccccccchHHHHHHHHHHHHHHhh
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
+++|++||++|+.|+++.++++...
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~ 124 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEG 124 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999998543
No 206
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.92 E-value=0.5 Score=39.00 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=26.1
Q ss_pred CceEEechhhhcccCC--CHHHHHHHHHhcCCCCCCCceEEEEeec
Q psy12758 259 CRFLVLDEADRMLDMG--FEPQIRCIVQENGMPRTGDRQTLMFSAT 302 (308)
Q Consensus 259 ~~~lViDEad~ll~~~--f~~~l~~i~~~l~~~~~~~~q~i~~SAT 302 (308)
-.+|||||||.++... ..+.+ +++..+...+....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 4479999999985432 11122 3455554444556788887654
No 207
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=81.89 E-value=2.9 Score=41.11 Aligned_cols=68 Identities=6% Similarity=0.052 Sum_probs=47.9
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceE
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGKIGLANCRFL 262 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~l 262 (308)
..++||.+|+++-+..+++.++.. ++++..++|. ......+.+ ....+|||+|- .+. ..+++. ++++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcEE
Confidence 357899999999999998888765 6788888884 222223333 34679999994 333 445677 7776
Q ss_pred E
Q psy12758 263 V 263 (308)
Q Consensus 263 V 263 (308)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 208
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=81.83 E-value=3 Score=41.70 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=55.1
Q ss_pred ccccccccCCHHhHHHHHHHHHHhh-------hcCCCceEEEecCCchhHhHHhhc---------CCCeEEEECcHHHHH
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFA-------YRSQLRPCVVYGGSNVGDQMRDLD---------RGCHLLVATPGRLVD 247 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~l~---------~~~~IlV~TP~~L~~ 247 (308)
...+||.+|+++-+..+++.+.... ...++.+..++|+....++.+.+. ....|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4678999999999999988887632 224788899999998877766553 2458999995
Q ss_pred HHHcCCcCCCCCceEE
Q psy12758 248 MLERGKIGLANCRFLV 263 (308)
Q Consensus 248 ~l~~~~~~l~~~~~lV 263 (308)
.+. ..+++.++++||
T Consensus 378 iae-~GidIp~v~~VI 392 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVV 392 (773)
T ss_dssp HHH-HTCCCTTEEEEE
T ss_pred HHH-hCcCcCCeEEEE
Confidence 333 446678888776
No 209
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.78 E-value=0.67 Score=41.02 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
..++++.+++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999754
No 210
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=81.64 E-value=2 Score=37.21 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.|.+|+++.-.+.+++.|... +.. -...++++.||+|+|||...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 456899887778787777643 111 11236999999999999754
No 211
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.56 E-value=3 Score=38.38 Aligned_cols=66 Identities=6% Similarity=-0.033 Sum_probs=46.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceE
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGKIGLANCRFL 262 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~l 262 (308)
.+++|.+|+++-+..+++.++.. ++++..++|+... .....+ ....+|||+|- .+. ..+++. +.++
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcEE
Confidence 57999999999999999988876 6788888887322 222222 35689999994 444 445565 5555
No 212
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.11 E-value=0.5 Score=40.76 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=31.7
Q ss_pred CCCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhhHh--cCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVII--SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~--~~~pt~iQ~~~ip~i~--~g~d~lv~a~TGsGKTla~ 115 (308)
+.+|+++.-.+.+.+.+...- |..+ .++..+- -.+.+++.+|+|+|||...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 368999988887777775431 1111 1121111 1245999999999999754
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.99 E-value=0.49 Score=43.96 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++.|=-+.+.+.|.+. -+.+|--++..-+ .-.+.+++.+|+|||||+..
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 5899987666677666542 1122222222211 12378999999999999864
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=80.88 E-value=0.73 Score=36.91 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+-+++.+|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999844
No 215
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.82 E-value=4.9 Score=37.56 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=46.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec--------CCchhHhHHhh---c--CCCeEEEECcHHHHHHHHc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG--------GSNVGDQMRDL---D--RGCHLLVATPGRLVDMLER 251 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l~~ 251 (308)
.++||.+++++.+..+.+.++.......+++..++| +.+..++...+ . ...+|||+|. +-.
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~~~ 463 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------VAD 463 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------CTT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------hhh
Confidence 678999999999999999998876544555655554 44444433322 3 3578999995 234
Q ss_pred CCcCCCCCceEEe
Q psy12758 252 GKIGLANCRFLVL 264 (308)
Q Consensus 252 ~~~~l~~~~~lVi 264 (308)
..+++.+++++|.
T Consensus 464 ~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 464 EGIDIAECNLVIL 476 (555)
T ss_dssp CCEETTSCSEEEE
T ss_pred cCCccccCCEEEE
Confidence 5577888888875
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.75 E-value=0.83 Score=42.36 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA---RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~---~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++.+=-+.+.+.|.+. -+.+|--++...++ -.+.+++.+|+|||||+..
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 6899987556666666542 12344333333221 2378999999999999854
No 217
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.70 E-value=1.1 Score=40.50 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred hHhcCCCEEEEccCCCchhHH
Q psy12758 94 VIISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 94 ~i~~g~d~lv~a~TGsGKTla 114 (308)
.+..|..+++.++||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 355789999999999999974
No 218
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=80.63 E-value=1.1 Score=40.50 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=19.7
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778876 677789999999875
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.36 E-value=1.2 Score=39.17 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.+..+++.+++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4579999999999999754
No 220
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.29 E-value=1.3 Score=39.58 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.8
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4555678876 677889999999886
No 221
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.29 E-value=2.4 Score=37.54 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=29.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCC--CEEEEccCCCchhHHhH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGR--DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~--d~lv~a~TGsGKTla~l 116 (308)
.|.+|++.--.+.+++.|.. .+..|+ ++++.+|+|+|||....
T Consensus 20 rp~~~~~~~g~~~~~~~L~~---------------~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRK---------------FVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHH---------------HHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHH---------------HHhcCCCceEEEECCCCCCHHHHHH
Confidence 46678887556666665542 122343 48999999999997654
No 222
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.26 E-value=6.5 Score=34.43 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEeecCCC
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPK 305 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SATl~~ 305 (308)
..+.+++||||||.|-.. ....++..+-.| +..-++++.++-|.
T Consensus 80 ~~~~kvviIdead~lt~~----a~naLLk~LEep--~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ----AANAFLKALEEP--PEYAVIVLNTRRWH 123 (305)
T ss_dssp SSSSEEEEETTGGGBCHH----HHHHTHHHHHSC--CTTEEEEEEESCGG
T ss_pred cCCceEEEeccHHHhCHH----HHHHHHHHHhCC--CCCeEEEEEECChH
Confidence 456789999999998543 334444444232 23444555555544
No 223
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.19 E-value=1.2 Score=40.11 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=19.4
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455678876 577889999999975
No 224
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.16 E-value=1.3 Score=39.85 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.4
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHhH
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAFL 116 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~l 116 (308)
..+..++.|.| +++-++||||||....
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 36677788976 5778899999998763
No 225
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=79.79 E-value=2.9 Score=43.87 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=45.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccchHHHHHHHHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 169 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~pt~~l~~q~~~~~~~~~ 169 (308)
.|. .+|.|.-|||||.+..-=++..+...+.. .+ ........++|+++=|+.-+..+.+++++..
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~------~~-~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGS------AA-FPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSS------SS-CSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcc------cc-cCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 444 49999999999998777777776543210 00 0112345689999999999999999887753
No 226
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.75 E-value=0.19 Score=53.40 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
++-++||+|||=.-+|..-+..+...+..+ .+++-+|+.+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~----~~~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRA----REGRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTT----SSSSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHH----cCCCEEEEec
Confidence 455679999999888887677777777654 2345555544
No 227
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.56 E-value=1.4 Score=40.50 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=21.1
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHhH
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAFL 116 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~l 116 (308)
.+..++.|.| +++-++||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6677888976 5777899999999863
No 228
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=79.53 E-value=1.3 Score=39.96 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36777888976 577789999999986
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.38 E-value=4.1 Score=44.99 Aligned_cols=27 Identities=33% Similarity=0.255 Sum_probs=20.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
.|+++++.+++|||||...+.-+.+.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999987655554443
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=79.29 E-value=0.87 Score=36.19 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.4
Q ss_pred hcCCCEEEEccCCCchhHHhH
Q psy12758 96 ISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~l 116 (308)
..++.+++.+++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998543
No 231
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.10 E-value=0.97 Score=40.31 Aligned_cols=20 Identities=50% Similarity=0.865 Sum_probs=17.6
Q ss_pred HhcCCCEEEEccCCCchhHH
Q psy12758 95 IISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla 114 (308)
+..|..+.+.++||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45789999999999999983
No 232
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.97 E-value=1.5 Score=39.23 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788976 677889999999876
No 233
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=78.86 E-value=1.5 Score=39.45 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=19.5
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556678876 577789999999875
No 234
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.81 E-value=1.5 Score=39.83 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556778876 677889999999876
No 235
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=78.79 E-value=1.5 Score=39.54 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=19.4
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455678865 677889999999886
No 236
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=78.79 E-value=3.4 Score=35.78 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=49.3
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCC
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANC 259 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~ 259 (308)
..++||.+++++.+..+++.++ ++..++|+....++.+.+ ....+|+|+|. .+. ..+++.++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~ 285 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPLV 285 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCCB
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccCC
Confidence 3678999999998887766554 466778887766554433 34679999994 444 45678889
Q ss_pred ceEEech
Q psy12758 260 RFLVLDE 266 (308)
Q Consensus 260 ~~lViDE 266 (308)
+++|.-.
T Consensus 286 ~~Vi~~~ 292 (337)
T 2z0m_A 286 EKVINFD 292 (337)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 9888643
No 237
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.71 E-value=1.5 Score=39.77 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.5
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455678876 677889999999986
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=78.68 E-value=1 Score=36.74 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+-+++.+|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 239
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.67 E-value=1.3 Score=40.71 Aligned_cols=26 Identities=38% Similarity=0.518 Sum_probs=19.6
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHhH
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAFL 116 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~l 116 (308)
.+..++.|.| +++-++||||||....
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 4455678865 6778899999998763
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.60 E-value=0.98 Score=38.84 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.5
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..|.-+.+.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999753
No 241
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.49 E-value=2 Score=38.97 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=19.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
.+.++++.++||+|||...-.-+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999998654444333
No 242
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=78.38 E-value=1.5 Score=39.61 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=19.4
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445678865 677889999999886
No 243
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=78.28 E-value=3 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEccCCCchhHHhHHHHHHHHHh
Q psy12758 102 MACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 102 lv~a~TGsGKTla~llpil~~l~~ 125 (308)
+|.|..|||||.+.+-=+...+.+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~ 28 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRR 28 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCChHHHHHHHHHHHHHh
Confidence 688999999999776655555443
No 244
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=78.26 E-value=1.1 Score=42.33 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhh--HhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALARYDKPTPVQKYAIPV--IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~--i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++=.+..++.|.+.= ..|... .+.+.. +...+.+++.+|+|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i-~~~l~~-~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMV-ELPLRH-PALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHT-HHHHHC-HHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHH-HHHhhC-HHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 47888765555566664421 111000 011111 123468999999999999854
No 245
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.21 E-value=1.5 Score=39.56 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=19.5
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455678876 577889999999886
No 246
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.19 E-value=1.5 Score=39.89 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=19.3
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455778876 577789999999875
No 247
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.09 E-value=1.5 Score=39.58 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.5
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 35566778976 577789999999986
No 248
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=78.08 E-value=1.5 Score=39.48 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=19.7
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556678865 677889999999986
No 249
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.86 E-value=1.5 Score=39.56 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=19.9
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556778876 567789999999885
No 250
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=77.83 E-value=1.8 Score=38.92 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=45.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.++.. ++.+..++|+....++...+ ....+|||+|. +-...+++.+++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v~ 350 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQVS 350 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCCC
Confidence 46899999999999988887664 57788899988766554433 23578999995 223446677777
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7774
No 251
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.82 E-value=2.6 Score=48.45 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHHhh---HhcCCCEEEEccCCCchhHHhHH
Q psy12758 68 MTEIITNNIALARYDKPTPVQ-KYAIPV---IISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ-~~~ip~---i~~g~d~lv~a~TGsGKTla~ll 117 (308)
|...+.+.+.++|+. |++.+ .+++.. +...+.+++.||||||||.++-+
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 456677778888885 45544 444433 44568899999999999998753
No 252
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=77.73 E-value=1.1 Score=36.38 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.++.+++.+++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999864
No 253
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=77.70 E-value=1.8 Score=36.27 Aligned_cols=29 Identities=48% Similarity=0.714 Sum_probs=24.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhhcC
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYRSQL 174 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~~~~ 174 (308)
.+++|++||++|+.|+++.++++......
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 131 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRL 131 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCc
Confidence 46899999999999999999998655433
No 254
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.64 E-value=1.5 Score=39.80 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=19.2
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 4455678876 677889999999875
No 255
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.36 E-value=2 Score=35.74 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=18.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
|.-+++.|++|+|||.-.+--+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999999999975543333333
No 256
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.25 E-value=1.5 Score=39.70 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=19.9
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556778875 677889999999875
No 257
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.12 E-value=1.6 Score=40.31 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=21.0
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| +++-++||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36677888976 577789999999986
No 258
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=77.01 E-value=6.3 Score=38.69 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=54.2
Q ss_pred ccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhH---hHHhhc---CCCeEEEECcHHHHHHHHcCCcCCCCC
Q psy12758 186 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGD---QMRDLD---RGCHLLVATPGRLVDMLERGKIGLANC 259 (308)
Q Consensus 186 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~---~~~~IlV~TP~~L~~~l~~~~~~l~~~ 259 (308)
..+|++.++.-+..+++.++.. ++.+..+||+..... +.+... ...+|||||- . -...+++ ++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i-~e~GlDi-~v 390 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----A-IGMGLNL-SI 390 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----G-GGSSCCC-CB
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----H-HHCCcCc-Cc
Confidence 3467789998888888888764 678999999998763 334444 4479999995 3 3455678 89
Q ss_pred ceEEechhhhc
Q psy12758 260 RFLVLDEADRM 270 (308)
Q Consensus 260 ~~lViDEad~l 270 (308)
+++|.-.....
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998777654
No 259
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.93 E-value=3.5 Score=34.24 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHhhHhcC----CCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 70 EIITNNIALARYDKPTPVQKYAIPVIISG----RDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 70 ~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g----~d~lv~a~TGsGKTla~llpil~~l 123 (308)
..|.+-|+-.|+. +... ...+..++.+ +.+++.+|.|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3567777766653 2222 4445555555 35999999999999765 4444444
No 260
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.74 E-value=1.4 Score=40.01 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=20.2
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667778976 567789999999886
No 261
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.57 E-value=1.7 Score=39.73 Aligned_cols=26 Identities=38% Similarity=0.518 Sum_probs=19.8
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHhH
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAFL 116 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~l 116 (308)
.+..++.|.| +++-++||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4455678865 6778899999998863
No 262
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=76.49 E-value=1.6 Score=39.91 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=18.1
Q ss_pred hhHhcCCC--EEEEccCCCchhHHh
Q psy12758 93 PVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 93 p~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..++.|.| +++-++||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34667866 677889999999886
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=76.21 E-value=1.7 Score=35.68 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+-+++.+|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999854
No 264
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=76.20 E-value=1.7 Score=39.25 Aligned_cols=19 Identities=47% Similarity=0.574 Sum_probs=16.2
Q ss_pred cCCC--EEEEccCCCchhHHh
Q psy12758 97 SGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d--~lv~a~TGsGKTla~ 115 (308)
.|.+ +++-++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999876
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=76.19 E-value=1.2 Score=35.98 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.5
Q ss_pred hcCCCEEEEccCCCchhHHh
Q psy12758 96 ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~ 115 (308)
..|.-+++.+++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999754
No 266
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.05 E-value=1.9 Score=40.11 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=19.3
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678876 677889999999886
No 267
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.94 E-value=1.3 Score=39.42 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-+++.+|||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999754
No 268
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=75.88 E-value=1.6 Score=42.71 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=49.5
Q ss_pred ccccccccCCHHhHHHHHHHHHHh--hhcCCCceEEEecC--------CchhHhHHhh----cCCCeEEEECcHHHHHHH
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKF--AYRSQLRPCVVYGG--------SNVGDQMRDL----DRGCHLLVATPGRLVDML 249 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~~~l----~~~~~IlV~TP~~L~~~l 249 (308)
..++||.++++..+..+.+.++.. ....++++..++|+ .+..++...+ ....+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 478999999999999999998875 22336888889988 6665554433 24578999995 3
Q ss_pred HcCCcCCCCCceEE
Q psy12758 250 ERGKIGLANCRFLV 263 (308)
Q Consensus 250 ~~~~~~l~~~~~lV 263 (308)
-...+++.+++++|
T Consensus 474 ~~~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AEEGLDIKECNIVI 487 (699)
T ss_dssp CCTTSCCCSCCCCE
T ss_pred cccCCccccCCEEE
Confidence 34456778888877
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=75.85 E-value=1.3 Score=36.17 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.2
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..|+-+++++++|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346788999999999999743
No 270
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.83 E-value=1.3 Score=39.29 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=15.2
Q ss_pred hhhcccCCCHHHHHHHHHh
Q psy12758 267 ADRMLDMGFEPQIRCIVQE 285 (308)
Q Consensus 267 ad~ll~~~f~~~l~~i~~~ 285 (308)
+|.|++.|+.++++.++..
T Consensus 218 vd~Ml~~Gl~eEv~~L~~~ 236 (316)
T 3foz_A 218 FHQMLASGFEAEVRALFAR 236 (316)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHc
Confidence 4678888888888888875
No 271
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.78 E-value=2.4 Score=40.21 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=22.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
.+.++++.+.||||||.+.-..++..+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~ 194 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYK 194 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999766655555544
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.78 E-value=1.3 Score=35.17 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
++.+++.+++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 273
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.67 E-value=2 Score=39.09 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred HHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 91 AIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 91 ~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
.+..++.|.| +++-++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5667778876 577789999999876
No 274
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.64 E-value=4.3 Score=39.01 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=25.5
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+.+-+++++||.-.-+|......+...+..+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4567899999999999987777777777765
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.52 E-value=1.4 Score=35.79 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q psy12758 99 RDVMACAQTGSGKTAA 114 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla 114 (308)
|-+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.30 E-value=0.92 Score=36.30 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.8
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..|.-+++.+++|||||...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345677899999999999843
No 277
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.23 E-value=1.6 Score=36.01 Aligned_cols=24 Identities=50% Similarity=0.696 Sum_probs=22.0
Q ss_pred ccccccccchHHHHHHHHHHHHHH
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFA 169 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~ 169 (308)
.+++|++||++|+.|+++.++++.
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999974
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=75.09 E-value=1.4 Score=34.28 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++++++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 279
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=75.00 E-value=14 Score=37.85 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=56.7
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh---cCC---CeEEEECcHHHHHHHHcCCcCCC
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL---DRG---CHLLVATPGRLVDMLERGKIGLA 257 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~~---~~IlV~TP~~L~~~l~~~~~~l~ 257 (308)
..+++|.|.+++-+..+.+.+... .++++..++|+.+..+..+.+ .++ ++|||+|. +....+++.
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~------v~~~GlDl~ 573 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE------IGSEGRNFQ 573 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC------CTTCSSCCT
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc------hhhcCCCcc
Confidence 467999999999998888877742 378899999998765554333 333 89999994 234557788
Q ss_pred CCceEEechhh
Q psy12758 258 NCRFLVLDEAD 268 (308)
Q Consensus 258 ~~~~lViDEad 268 (308)
+++++|+-+.+
T Consensus 574 ~~~~VI~~d~p 584 (968)
T 3dmq_A 574 FASHMVMFDLP 584 (968)
T ss_dssp TCCEEECSSCC
T ss_pred cCcEEEEecCC
Confidence 99999876665
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=74.94 E-value=1.4 Score=34.75 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
++-+++++++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.92 E-value=1.4 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-+++.+|||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999754
No 282
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.92 E-value=1.2 Score=38.85 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+.+++.+|+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999854
No 283
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=74.91 E-value=3.6 Score=40.34 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=49.2
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcHHHHHHHHcCCcCCCCCceEE
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLV 263 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lV 263 (308)
..++||.++|++-+.++++.++.. ++++..++|+...... ...+.+|||+|. .+.++ +++. ++++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHcc-CCCC-CcEEE
Confidence 356899999999999999888764 6888999999876542 234569999994 45544 3354 77766
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=74.82 E-value=1.6 Score=34.97 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999743
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=74.70 E-value=1.5 Score=35.42 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+|+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999854
No 286
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=74.47 E-value=1.6 Score=39.37 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
..++++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999754
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=74.43 E-value=3 Score=47.35 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---hhHhcCCCEEEEccCCCchhHHhHH
Q psy12758 68 MTEIITNNIALARYDKPTPVQ-KYAI---PVIISGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 68 l~~~l~~~L~~~~~~~pt~iQ-~~~i---p~i~~g~d~lv~a~TGsGKTla~ll 117 (308)
+...+.+++.+.|+. |++.+ .+++ ..+..++.+++.||||||||.++-+
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 345677777788875 55554 3333 3345678999999999999998643
No 288
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=74.28 E-value=1.3 Score=36.69 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+-+++.++||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567899999999998643
No 289
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.23 E-value=1.6 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
..+++.+|+|+|||...-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999997653
No 290
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.20 E-value=1.7 Score=35.98 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=16.5
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..|+-+.+.+|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346788999999999999743
No 291
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.96 E-value=1.4 Score=41.00 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=29.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHhH
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~l 116 (308)
.|+++.-.+.+++.+... + ..+-.....++.+++.+|+|+|||....
T Consensus 35 ~~~~iiG~~~~~~~l~~~-------~-~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 35 AASGLVGQENAREACGVI-------V-ELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp EETTEESCHHHHHHHHHH-------H-HHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred chhhccCHHHHHHHHHHH-------H-HHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 578876666676665421 0 0111111234689999999999998653
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=73.88 E-value=1.8 Score=33.90 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+..+++.+++|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999743
No 293
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.82 E-value=3.2 Score=35.92 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=27.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHHhhHhcC--CCEEEEccCCCchhHHhH
Q psy12758 59 LPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISG--RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 59 ~~~~f~~l~l~~~l~~~L~~~~~~~pt~iQ~~~ip~i~~g--~d~lv~a~TGsGKTla~l 116 (308)
.|.+|+++.-.+.+++.|... +..+ .++++.||+|+|||....
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQI---------------AKDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHH---------------HHSCCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHH---------------HHcCCCCeEEEECcCCCCHHHHHH
Confidence 356788776555555555331 1222 359999999999997543
No 294
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=73.68 E-value=7.3 Score=37.78 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=46.6
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEE
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGKIGLANCRFLV 263 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lV 263 (308)
.++||.++|++-+..+++.++.. ++++..++|... ....+.+ ....+|||||. .+. ..+++. ++++|
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTH-HHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHH-HHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 56899999999999999988875 577888887522 2222222 34679999995 344 445664 77763
No 295
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=73.63 E-value=2.2 Score=41.61 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=43.6
Q ss_pred ccccccccCCHHhHHHHHHHHHHhhhcCCCceEEEec--------CCchhHhHHhh---c--CCCeEEEECcHHHHHHHH
Q psy12758 184 FPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYG--------GSNVGDQMRDL---D--RGCHLLVATPGRLVDMLE 250 (308)
Q Consensus 184 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l~ 250 (308)
..++||.+++++.+..+++.++.......+++..++| +.+..++.+.+ . ...+|||+|- +.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v~ 471 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------VA 471 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------SS
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------hh
Confidence 4679999999999999999998865444477777755 65554444333 2 3578999994 33
Q ss_pred cCCcCCCCCceEEe
Q psy12758 251 RGKIGLANCRFLVL 264 (308)
Q Consensus 251 ~~~~~l~~~~~lVi 264 (308)
...+++.+++++|.
T Consensus 472 ~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 472 DEGIDIAQCNLVIL 485 (696)
T ss_dssp CCC---CCCSEEEE
T ss_pred hcCCcCccCCEEEE
Confidence 45577888888775
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.52 E-value=1.5 Score=37.32 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-++++++||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999754
No 297
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=73.17 E-value=2.4 Score=37.08 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ll 117 (308)
|+-+++.+++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46788999999999976433
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=72.92 E-value=1.6 Score=39.60 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.1
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..|.-+++.+|||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345778999999999999753
No 299
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.90 E-value=2.2 Score=35.10 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778999999999999843
No 300
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.90 E-value=1.7 Score=36.22 Aligned_cols=24 Identities=50% Similarity=0.519 Sum_probs=21.5
Q ss_pred ccccccchHHHHHHHHHHHHHHhh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
++|++||++|+.|+++.++++...
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~ 124 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDY 124 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT
T ss_pred EEEEECcHHHHHHHHHHHHHHhhh
Confidence 789999999999999999998643
No 301
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.87 E-value=0.92 Score=38.59 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhh--HhcCCCEEEEccCCCchhHHhH
Q psy12758 61 PQFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPV--IISGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~--~~~pt~iQ~~~ip~--i~~g~d~lv~a~TGsGKTla~l 116 (308)
.+|+++.-.+..++.|.+.- +..|. .+.. ....+.+++.+|+|+|||...-
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPE-----RYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHH-----HHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChH-----HHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 46888765555555554320 11111 1111 1123679999999999998653
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.84 E-value=1.7 Score=34.80 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.+..+++.+++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999854
No 303
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.33 E-value=2.1 Score=36.08 Aligned_cols=26 Identities=42% Similarity=0.519 Sum_probs=22.2
Q ss_pred ccccccchHHHHHHHHHHHHHHhhhc
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAYRSQ 173 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~~~~ 173 (308)
++|++||++|+.|+++.++++.....
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 58999999999999999999865443
No 304
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.05 E-value=1.9 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.5
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+-.|+=+++.+|+|+|||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446788899999999999854
No 305
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.98 E-value=2.2 Score=35.33 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.9
Q ss_pred ccccccccchHHHHHHHHHHHHHHhh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
.+++|++||++|+.|+++.++++...
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~ 123 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKN 123 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998644
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=71.95 E-value=1.9 Score=34.95 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+++.+++|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 307
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.92 E-value=1.9 Score=35.21 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=16.8
Q ss_pred hHhcCCCEEEEccCCCchhHHh
Q psy12758 94 VIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 94 ~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+..|.=+.+.+|+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999754
No 308
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.57 E-value=1.6 Score=34.54 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ll 117 (308)
.|.=+.+.+++|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456688999999999986543
No 309
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=71.46 E-value=9.2 Score=35.59 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=49.3
Q ss_pred ccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCce
Q psy12758 186 LGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCRF 261 (308)
Q Consensus 186 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~ 261 (308)
..+|+....+-+..+.+.+... +.++..++|+.........+ ....+|+|+|+. .+.. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~----~~~~-GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG----VFST-GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH----HHHH-SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC----hhhc-ccccccCcE
Confidence 3445555566666666666654 34788889988765543322 346789999973 3343 357889999
Q ss_pred EEechhh
Q psy12758 262 LVLDEAD 268 (308)
Q Consensus 262 lViDEad 268 (308)
+|+..++
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988777
No 310
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=71.31 E-value=1.9 Score=33.84 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.+++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=71.24 E-value=2 Score=34.08 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.++.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999853
No 312
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=70.41 E-value=2.1 Score=33.34 Aligned_cols=16 Identities=6% Similarity=-0.128 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.++.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 313
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.81 E-value=0.65 Score=49.39 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
+++-+++|+||+=.-+|..-+..+...+..+ .+++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~----~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKA----AKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHH----HTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHH----hCCCEEEEEc
Confidence 4566789999999999988777777777665 2345555544
No 314
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=69.73 E-value=2.4 Score=39.96 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=45.2
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHh---h-cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRD---L-DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++.+..+++.+.. .+..+.+++|+....++... + ....+|||+|- .+ ...+++.+++
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l-~~GiDip~v~ 427 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VI-ARGIDVSQVN 427 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCC
T ss_pred CcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hh-hcCCCccCCC
Confidence 5789999999999988887765 35778888888765443322 2 34578999995 33 3456788898
Q ss_pred eEEec
Q psy12758 261 FLVLD 265 (308)
Q Consensus 261 ~lViD 265 (308)
++|..
T Consensus 428 ~VI~~ 432 (508)
T 3fho_A 428 LVVNY 432 (508)
T ss_dssp EEEC-
T ss_pred EEEEE
Confidence 88853
No 315
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=69.68 E-value=5.8 Score=36.81 Aligned_cols=67 Identities=6% Similarity=0.033 Sum_probs=44.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh-cCCCeEEEECcHHHHHHHHcCCcCCCCCceEE
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL-DRGCHLLVATPGRLVDMLERGKIGLANCRFLV 263 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lV 263 (308)
.++||.+++++-+..+++.++.. ++++..++|... ....... ....+|||+|- .+. ..+++.+ +++|
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHH-HHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 57999999999999999988875 677888887522 2222233 34578999994 333 3456666 5555
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=69.68 E-value=1.9 Score=33.94 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|.-+++.+++|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 557899999999999754
No 317
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=69.63 E-value=4 Score=39.18 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhc
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQMYER 126 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l~~~ 126 (308)
..+++|.+.||||||.+.-..+++.++..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~ 242 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKS 242 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTC
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 35899999999999998766666665443
No 318
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.06 E-value=3.3 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhHH
Q psy12758 101 VMACAQTGSGKTAAFLV 117 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ll 117 (308)
.++.++.|||||+....
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 58999999999996543
No 319
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=69.04 E-value=8 Score=34.37 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=15.9
Q ss_pred CEEEEccCCCchhHHhHHHHH
Q psy12758 100 DVMACAQTGSGKTAAFLVPIL 120 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil 120 (308)
-+.+.+++|+|||...+-.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999986544433
No 320
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.73 E-value=2.2 Score=42.88 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=33.6
Q ss_pred CCccCCCCCHHHHHHHHHCC---CCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALAR---YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~---~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++.-+.+.+.|.+.= ..+|..++..- +...+.+++.+|+|+|||+..
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 58999998888888886541 11221111100 112368999999999999754
No 321
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=68.70 E-value=9.1 Score=35.75 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=34.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEE--------ecCCchhHhHHhh---c--CCCeEEEECcHHHHHHHHc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV--------YGGSNVGDQMRDL---D--RGCHLLVATPGRLVDMLER 251 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~--------~gg~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l~~ 251 (308)
.++||.++++..+..+.+.++......++++..+ +|+.+..++...+ . ...+|||+|- . -.
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~-~~ 464 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V-AD 464 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----c-hh
Confidence 5788999999999888888876533233444433 3445444433332 2 3478999995 2 33
Q ss_pred CCcCCCCCceEEec
Q psy12758 252 GKIGLANCRFLVLD 265 (308)
Q Consensus 252 ~~~~l~~~~~lViD 265 (308)
..+++.+++++|.=
T Consensus 465 ~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 465 EGIDIVQCNLVVLY 478 (556)
T ss_dssp --------CEEEEE
T ss_pred cCCCchhCCEEEEe
Confidence 45678889888853
No 322
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.65 E-value=2.4 Score=37.76 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.0
Q ss_pred hhhcccCCCHHHHHHHHHh
Q psy12758 267 ADRMLDMGFEPQIRCIVQE 285 (308)
Q Consensus 267 ad~ll~~~f~~~l~~i~~~ 285 (308)
+|.|++.|+.+.++.++..
T Consensus 224 vd~M~~~Gl~~Ev~~L~~~ 242 (323)
T 3crm_A 224 FRQMLEQGFIAEVEALHAR 242 (323)
T ss_dssp HHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHCCHHHHHHHHHhc
Confidence 5778888888888888754
No 323
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.47 E-value=29 Score=34.89 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+++++.+++|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999854
No 324
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=67.97 E-value=3 Score=33.53 Aligned_cols=25 Identities=52% Similarity=0.627 Sum_probs=22.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~ 170 (308)
.+++|++||++|+.|+++.++++..
T Consensus 73 ~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 73 PRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CcEEEEECCHHHHHHHHHHHHHHhh
Confidence 4689999999999999999998853
No 325
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=67.55 E-value=1.1 Score=41.69 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.+++|.|+++.-+..+++.+... +..+..++|+.....+...+ ....+|||||. .+. ..+++.+++
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~v~ 403 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCccccCC
Confidence 56899999999998888887765 56777888887765554433 23578999994 333 445677887
Q ss_pred eEE
Q psy12758 261 FLV 263 (308)
Q Consensus 261 ~lV 263 (308)
++|
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 776
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.49 E-value=3.6 Score=33.53 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=21.4
Q ss_pred cHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 85 TPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 85 t~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..+... ..+..|.-+++.++.|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 33556778999999999999754
No 327
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=67.46 E-value=2.9 Score=34.00 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHhHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llp 118 (308)
.|.-+++.+++|+|||.....-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999765443
No 328
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.44 E-value=2.6 Score=37.80 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999754
No 329
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=67.42 E-value=19 Score=36.12 Aligned_cols=54 Identities=15% Similarity=-0.023 Sum_probs=38.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhc--CCCeEEEECc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLD--RGCHLLVATP 242 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~~IlV~TP 242 (308)
..+||.|.|++-+..+.+.++.. ++.+.+++|+....+...... ....|+|||.
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred CcEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 35899999999999888877664 678888998865433322111 1357999994
No 330
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=67.38 E-value=11 Score=36.97 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=52.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhc--------------------------------CCCceEEEecCCchhHhHHhh-
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYR--------------------------------SQLRPCVVYGGSNVGDQMRDL- 231 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l- 231 (308)
..+||.+|+++-+..++..+...... ....+..++||....++....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 67899999999999988888764321 123477889998876665443
Q ss_pred ---cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEe
Q psy12758 232 ---DRGCHLLVATPGRLVDMLERGKIGLANCRFLVL 264 (308)
Q Consensus 232 ---~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lVi 264 (308)
....+|+|+|. .-...+++..+.++|-
T Consensus 333 ~f~~g~~~vlvaT~------~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 333 GFRQRKIKVIVATP------TLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHTTCSCEEEECG------GGGGSSCCCBSEEEEC
T ss_pred HHHcCCCeEEEECh------HHhcccCCCceEEEEe
Confidence 24679999995 2334567888877653
No 331
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=67.09 E-value=3 Score=40.31 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHH
Q psy12758 100 DVMACAQTGSGKTAA 114 (308)
Q Consensus 100 d~lv~a~TGsGKTla 114 (308)
++++.+++|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 332
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=67.08 E-value=2.4 Score=38.91 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-++|.+|||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999754
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.94 E-value=2.6 Score=33.56 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-+++.+++|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999854
No 334
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.77 E-value=3.3 Score=38.68 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
..++++.+++|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999998653
No 335
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.72 E-value=3.6 Score=35.05 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.5
Q ss_pred hcCCCEEEEccCCCchhHHh
Q psy12758 96 ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~ 115 (308)
+.|+.+++.+++|||||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34899999999999999864
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=66.38 E-value=2 Score=34.05 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+++.++.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999754
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.23 E-value=2.8 Score=33.89 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-++++++.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999854
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=66.09 E-value=2.9 Score=32.39 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q psy12758 100 DVMACAQTGSGKTAA 114 (308)
Q Consensus 100 d~lv~a~TGsGKTla 114 (308)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999985
No 339
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=65.93 E-value=11 Score=37.57 Aligned_cols=75 Identities=24% Similarity=0.339 Sum_probs=38.4
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEE--------EecCCchhHhHHhh---c--CCCeEEEECcHHHHHHHHc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCV--------VYGGSNVGDQMRDL---D--RGCHLLVATPGRLVDMLER 251 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~--------~~gg~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l~~ 251 (308)
.++||.++++..+..+.+.++......++++.. ++|+.+..++...+ . ..++|||+|- . ..
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~-~~ 705 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V-AD 705 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C---
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----c-hh
Confidence 678999999999999998887753333333333 34555544443332 2 3578999994 2 33
Q ss_pred CCcCCCCCceEEec
Q psy12758 252 GKIGLANCRFLVLD 265 (308)
Q Consensus 252 ~~~~l~~~~~lViD 265 (308)
..+++..+++||.=
T Consensus 706 ~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 706 EGIDIVQCNLVVLY 719 (797)
T ss_dssp -----CCCSEEEEE
T ss_pred cCCCchhCCEEEEe
Confidence 45678889988853
No 340
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.68 E-value=3.1 Score=34.39 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpi 119 (308)
.|.-+++.+++|+|||.....-+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45778999999999998654433
No 341
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=65.48 E-value=4.3 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=18.8
Q ss_pred hHhcCCCEEEEccCCCchhHHh
Q psy12758 94 VIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 94 ~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+..|+.+++.+|+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4567889999999999999754
No 342
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=65.41 E-value=2.8 Score=33.16 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-.++.+++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4688999999999753
No 343
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=65.32 E-value=2.2 Score=35.35 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=13.1
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..|+-+.+.+|+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345777899999999999754
No 344
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=65.29 E-value=2.6 Score=34.09 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCchhHHh
Q psy12758 96 ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~ 115 (308)
..|.-+++.+++|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34677899999999999754
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=65.24 E-value=4.7 Score=32.62 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCCCceEEechhhhc--ccCCCHHHHHHHHHh
Q psy12758 256 LANCRFLVLDEADRM--LDMGFEPQIRCIVQE 285 (308)
Q Consensus 256 l~~~~~lViDEad~l--l~~~f~~~l~~i~~~ 285 (308)
..+.++||+||+..| .+..|...++.++..
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 456789999998877 455576677777653
No 346
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.99 E-value=4 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
..+++.+|+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999997543
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=64.93 E-value=2.8 Score=36.39 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=64.48 E-value=2.9 Score=38.93 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q psy12758 99 RDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~l 116 (308)
..+++.+|+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998643
No 349
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=63.92 E-value=12 Score=36.81 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=50.2
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhc-----------------------------CCCceEEEecCCchhHhHHhh----
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYR-----------------------------SQLRPCVVYGGSNVGDQMRDL---- 231 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~-----------------------------~~~~~~~~~gg~~~~~~~~~l---- 231 (308)
..+||.+++++-+..++..+...... ....+..++||....++....
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 56899999999998888887764321 122477889998877665433
Q ss_pred cCCCeEEEECcHHHHHHHHcCCcCCCCCceEEec
Q psy12758 232 DRGCHLLVATPGRLVDMLERGKIGLANCRFLVLD 265 (308)
Q Consensus 232 ~~~~~IlV~TP~~L~~~l~~~~~~l~~~~~lViD 265 (308)
....+|+|+|. .-...+++..+.+ |||
T Consensus 318 ~g~~~vlvaT~------~l~~Gvdip~~~~-VI~ 344 (720)
T 2zj8_A 318 KGIIKAVVATP------TLSAGINTPAFRV-IIR 344 (720)
T ss_dssp TTSSCEEEECS------TTGGGCCCCBSEE-EEC
T ss_pred CCCCeEEEECc------HhhccCCCCceEE-EEc
Confidence 34578999995 2234466777766 444
No 350
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=63.88 E-value=3.1 Score=37.54 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=28.7
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
.+-+++++||--.-+|......+..++..+. ..+..+++.|
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~---~~g~tvi~it 342 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELE---RLNKVIVFIT 342 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGG---GSSSEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---hCCCEEEEEe
Confidence 4667899999998888776677777777663 2244555554
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=63.75 E-value=1.8 Score=35.17 Aligned_cols=23 Identities=26% Similarity=0.056 Sum_probs=17.6
Q ss_pred hhHhcCCCEEEEccCCCchhHHh
Q psy12758 93 PVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 93 p~i~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+..+.-+.+.+++|||||...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 44455667889999999999743
No 352
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=63.62 E-value=3.4 Score=35.96 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.0
Q ss_pred ccccccchHHHHHHHHHHHHHHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~ 170 (308)
++|++||++|+.|+++.++++..
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~ 187 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGK 187 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTT
T ss_pred EEEEcCcHHHHHHHHHHHHHHHh
Confidence 78999999999999999998864
No 353
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=63.60 E-value=3.6 Score=33.63 Aligned_cols=25 Identities=52% Similarity=0.650 Sum_probs=21.9
Q ss_pred cccccccchHHHHHHHHHHHHHHhh
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
+++|++||++|+.|+++.++++...
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~ 98 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKF 98 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 3789999999999999999988643
No 354
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=63.48 E-value=2.9 Score=35.13 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=22.7
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.+-++|++||--.-+|......+..++..+
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 456789999999888877666666666654
No 355
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.47 E-value=3.6 Score=34.51 Aligned_cols=27 Identities=56% Similarity=0.835 Sum_probs=23.8
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYRS 172 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~~ 172 (308)
.+++|++||++|+.|+++.++++....
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~ 127 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT 127 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC
Confidence 579999999999999999999986543
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=63.43 E-value=8.2 Score=35.59 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
++-+++.+++|+|||....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999997543
No 357
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=63.41 E-value=4.9 Score=39.72 Aligned_cols=26 Identities=42% Similarity=0.572 Sum_probs=20.9
Q ss_pred HHHhhHhcCCC--EEEEccCCCchhHHh
Q psy12758 90 YAIPVIISGRD--VMACAQTGSGKTAAF 115 (308)
Q Consensus 90 ~~ip~i~~g~d--~lv~a~TGsGKTla~ 115 (308)
..+..++.|.| ++.-++||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36778889976 566789999999875
No 358
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.23 E-value=4.5 Score=32.34 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.3
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 359
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=63.18 E-value=2.9 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHhHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLV 117 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ll 117 (308)
.|.-+.+.+|+|+|||.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999975433
No 360
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=62.93 E-value=3.3 Score=32.89 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 361
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.64 E-value=3 Score=34.00 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.7
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+++|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455678999999999974
No 362
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.62 E-value=3.6 Score=32.60 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 363
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=62.62 E-value=3.6 Score=38.26 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999854
No 364
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=62.58 E-value=3.2 Score=38.99 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCccCCCCCHHHHHHHHHC--CCCCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALA--RYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~--~~~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|+++.=.+..++.|... .+..|..++... +.-.+.+++.+|+|+|||+..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 5799987666666666542 122222111110 011257999999999999864
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=62.44 E-value=4 Score=32.01 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999754
No 366
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.36 E-value=3.9 Score=33.79 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=21.0
Q ss_pred ccccccchHHHHHHHHHHHHHHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~ 170 (308)
++|++||++|+.|+++.++++..
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGI 117 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999998854
No 367
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=61.95 E-value=3.8 Score=32.55 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.+.-+++.++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 368
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.80 E-value=13 Score=34.02 Aligned_cols=24 Identities=4% Similarity=-0.026 Sum_probs=18.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCc
Q psy12758 62 QFDDIQMTEIITNNIALARYDKPT 85 (308)
Q Consensus 62 ~f~~l~l~~~l~~~L~~~~~~~pt 85 (308)
.....|+.+..++.|.+.||.+-.
T Consensus 85 ~l~~~gi~~~~~~~L~~ag~~tv~ 108 (400)
T 3lda_A 85 KLQVNGITMADVKKLRESGLHTAE 108 (400)
T ss_dssp GGCCTTCCHHHHHHHHHTTCCBHH
T ss_pred HHHhCCCCHHHHHHHHHcCCCcHH
Confidence 456678999999999999987433
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=61.77 E-value=3.9 Score=32.83 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+++.++.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 370
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.65 E-value=4.1 Score=33.21 Aligned_cols=23 Identities=48% Similarity=0.550 Sum_probs=20.9
Q ss_pred ccccccchHHHHHHHHHHHHHHh
Q psy12758 148 GLVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 148 ~li~~pt~~l~~q~~~~~~~~~~ 170 (308)
++|++||++|+.|++++++++..
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~ 107 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSK 107 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999998854
No 371
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=61.58 E-value=14 Score=36.13 Aligned_cols=73 Identities=19% Similarity=0.122 Sum_probs=50.8
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhc--------------------------CCCceEEEecCCchhHhHHhh----cCC
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYR--------------------------SQLRPCVVYGGSNVGDQMRDL----DRG 234 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~--------------------------~~~~~~~~~gg~~~~~~~~~l----~~~ 234 (308)
..+||.+|++.-+..++..+...... .+..+..++||....++.... ...
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 56899999999999888887764321 123467789998876665433 345
Q ss_pred CeEEEECcHHHHHHHHcCCcCCCCCceEE
Q psy12758 235 CHLLVATPGRLVDMLERGKIGLANCRFLV 263 (308)
Q Consensus 235 ~~IlV~TP~~L~~~l~~~~~~l~~~~~lV 263 (308)
.+|+|+|. .-...+++..+.++|
T Consensus 323 ~~vlvaT~------~l~~Gidip~~~~VI 345 (702)
T 2p6r_A 323 IKVVVATP------TLAAGVNLPARRVIV 345 (702)
T ss_dssp CCEEEECS------TTTSSSCCCBSEEEE
T ss_pred CeEEEECc------HHhccCCCCceEEEE
Confidence 79999996 233456777777655
No 372
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.53 E-value=3.5 Score=46.84 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=18.0
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~ 115 (308)
+..++.++++||||||||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 446799999999999999754
No 373
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=61.24 E-value=3.8 Score=35.05 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.6
Q ss_pred hhHhcCCCEEEEccCCCchhHHhHHHH
Q psy12758 93 PVIISGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 93 p~i~~g~d~lv~a~TGsGKTla~llpi 119 (308)
.-+..|.-+++.+++|+|||...+.-+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 345577889999999999998654443
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.18 E-value=3.9 Score=33.30 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=61.15 E-value=4 Score=31.78 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+++++.++.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999854
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=61.09 E-value=3.5 Score=32.52 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999753
No 377
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.01 E-value=7.6 Score=42.22 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=18.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPILNQM 123 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpil~~l 123 (308)
|+-+.+.+|.|||||...+- ++...
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~ 1455 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAA 1455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHH
Confidence 36699999999999986544 44333
No 378
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.75 E-value=5 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
..++++.+|+|+|||...-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999998653
No 379
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=60.57 E-value=5.4 Score=34.37 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=18.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHH
Q psy12758 95 IISGRDVMACAQTGSGKTAAFLVP 118 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~llp 118 (308)
+..|.=+++.+++|+|||.....-
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 345677899999999999855443
No 380
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=60.55 E-value=4.3 Score=34.45 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=22.7
Q ss_pred ccccccccchHHHHHHHHHHHHHHhh
Q psy12758 146 PLGLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 146 ~~~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
.+++|++||++|+.|+++.++++...
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~ 152 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTH 152 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 36899999999999999999997543
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.51 E-value=4.4 Score=32.25 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.+.-+++.+++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 382
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.51 E-value=4.8 Score=31.74 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999754
No 383
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.46 E-value=3.8 Score=32.33 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.++.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999753
No 384
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.28 E-value=3.4 Score=33.50 Aligned_cols=18 Identities=28% Similarity=0.108 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|.-+.+.+++|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445778999999999753
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=60.16 E-value=4 Score=33.83 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+.+-+++++||--.-+|......+..++..+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4567889999999999998888888887765
No 386
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=60.06 E-value=3.7 Score=34.56 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCchhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla 114 (308)
..|.-+.+.+|+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577789999999999974
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=60.00 E-value=6.4 Score=31.83 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|.-+.+.+++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 445789999999999754
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.83 E-value=4.8 Score=31.26 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999754
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=59.67 E-value=4 Score=32.20 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.++.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 390
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=59.66 E-value=5 Score=35.28 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=16.6
Q ss_pred HhcCCCEEEEccCCCchhHH
Q psy12758 95 IISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla 114 (308)
+-.|.-+.+.+|+|+|||..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 33678899999999999974
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=59.59 E-value=4.3 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=59.49 E-value=4 Score=33.66 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.+++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999854
No 393
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.30 E-value=3.9 Score=32.45 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+++.+..|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999754
No 394
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=59.21 E-value=34 Score=35.32 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhcCCCeEEEECcH
Q psy12758 198 TQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPG 243 (308)
Q Consensus 198 ~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 243 (308)
.++.+.++.+....+-+..++..+.....+...+..++.|||+|-.
T Consensus 221 ~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESS
T ss_pred HHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCC
Confidence 4445555655544445778888888777777778888999999963
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=59.02 E-value=4.4 Score=33.15 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-+.+.+++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 396
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=58.84 E-value=4.5 Score=34.61 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.5
Q ss_pred cccccchHHHHHHHHHHHHHHh
Q psy12758 149 LVLAPTRELATQIYDEAKKFAY 170 (308)
Q Consensus 149 li~~pt~~l~~q~~~~~~~~~~ 170 (308)
+|++||++|+.|++++++++..
T Consensus 161 lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 161 LIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHTS
T ss_pred EEEECCHHHHHHHHHHHHHhcc
Confidence 5789999999999999999854
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=58.73 E-value=4.8 Score=32.93 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+..+++.++.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 398
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=58.61 E-value=9.6 Score=38.87 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=42.8
Q ss_pred cccccccccCCHHhHHHHHHHHHHhhhcCCCceEEE--------ecCCchhHhHHhh---c--CCCeEEEECcHHHHHHH
Q psy12758 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV--------YGGSNVGDQMRDL---D--RGCHLLVATPGRLVDML 249 (308)
Q Consensus 183 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~--------~gg~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l 249 (308)
...++||.++++..+..+.+.+.......++++..+ +|+.+..++...+ . ...+|||+|- .
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~- 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V- 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----c-
Confidence 347899999999999999999988643333444443 4555554444333 2 3578999994 2
Q ss_pred HcCCcCCCCCceEEech
Q psy12758 250 ERGKIGLANCRFLVLDE 266 (308)
Q Consensus 250 ~~~~~~l~~~~~lViDE 266 (308)
....+++..+++||.=+
T Consensus 704 ~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp ------CCCCSEEEEES
T ss_pred hhcCCcchhCCEEEEeC
Confidence 33456788899888643
No 399
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=58.50 E-value=4.1 Score=36.69 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHh
Q psy12758 101 VMACAQTGSGKTAAF 115 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ 115 (308)
.++.++||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 400
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=58.49 E-value=4.5 Score=33.84 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.+++|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999744
No 401
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=58.38 E-value=4.3 Score=32.64 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+.+.+++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999754
No 402
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=58.35 E-value=4.7 Score=32.42 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+-+++.++.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.26 E-value=5.1 Score=32.84 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999854
No 404
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=58.23 E-value=5.1 Score=32.11 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.7
Q ss_pred cccccccchHHHHHHHHHHHHHHhh
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYR 171 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~ 171 (308)
+++|++||++|+.|+++.++++...
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~ 97 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKH 97 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 3799999999999999999987543
No 405
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=57.90 E-value=4.1 Score=34.02 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.1
Q ss_pred hcCCCEEEEccCCCchhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla 114 (308)
..|.-+.+.+|+|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577888999999999974
No 406
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.81 E-value=4.8 Score=32.46 Aligned_cols=16 Identities=38% Similarity=0.250 Sum_probs=13.3
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+.+.++.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 407
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=57.71 E-value=3.5 Score=34.31 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=23.9
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+.+-++|++||--.-+|......+..++..+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4566789999999999887667777776655
No 408
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=57.64 E-value=2.2 Score=38.09 Aligned_cols=70 Identities=10% Similarity=0.232 Sum_probs=0.0
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh----cCCCeEEEECcHHHHHHHHcCCcCCCCCc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL----DRGCHLLVATPGRLVDMLERGKIGLANCR 260 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~~~ 260 (308)
.++||.+++++-+..+++.++.. ++.+..++|+....++...+ ....+|+|+|. .+. ..+++.+++
T Consensus 260 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gldi~~~~ 329 (394)
T 1fuu_A 260 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhh-cCCCcccCC
Confidence 57899999999999888887664 56677788887655444333 23568999994 232 345566676
Q ss_pred eEEe
Q psy12758 261 FLVL 264 (308)
Q Consensus 261 ~lVi 264 (308)
++|.
T Consensus 330 ~Vi~ 333 (394)
T 1fuu_A 330 LVIN 333 (394)
T ss_dssp ----
T ss_pred EEEE
Confidence 6664
No 409
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=57.50 E-value=12 Score=33.57 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=47.1
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceE-EEecCCchhHhHHhh-cCCCeEEEE----CcHHHHHHHHcCCcCCCC
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPC-VVYGGSNVGDQMRDL-DRGCHLLVA----TPGRLVDMLERGKIGLAN 258 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~-~~~gg~~~~~~~~~l-~~~~~IlV~----TP~~L~~~l~~~~~~l~~ 258 (308)
.++||.|++++-+..+++.++.. ++.+. .++|. ... .+.. ....+|+|+ |. +-...+++.+
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~------~~~~GiDip~ 319 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG------KLTRGVDLPE 319 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC------CCCCCCCCTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc------hhhccCcccc
Confidence 57999999999999999888775 56665 45553 222 4444 346899999 74 2334577888
Q ss_pred -CceEEe
Q psy12758 259 -CRFLVL 264 (308)
Q Consensus 259 -~~~lVi 264 (308)
++++|.
T Consensus 320 ~v~~VI~ 326 (414)
T 3oiy_A 320 RIKYVIF 326 (414)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 888884
No 410
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.45 E-value=5.3 Score=32.11 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-+++.++.|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 411
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=57.01 E-value=5.1 Score=32.70 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-.++.+++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4588999999999753
No 412
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.78 E-value=5.3 Score=30.88 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999754
No 413
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=56.64 E-value=6.7 Score=31.31 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=28.9
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEe
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFS 300 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~S 300 (308)
.-.++++||.+.-+|......+..++..+ ....|+|++|
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~----~~~~~~ivit 124 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKES----SKESQFIVIT 124 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHH----TTTSEEEEEC
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHh----ccCCEEEEEE
Confidence 34689999999999987666777776665 2346777766
No 414
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.61 E-value=5.2 Score=31.90 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.4
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.++.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999743
No 415
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=56.56 E-value=52 Score=26.16 Aligned_cols=29 Identities=17% Similarity=-0.057 Sum_probs=0.4
Q ss_pred hhHhcCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 93 PVIISGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 93 p~i~~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
+..+.|..+-+.+..|-|=|+.+.+|+..
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~ 43 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGN 43 (206)
T ss_dssp C----------------------------
T ss_pred cccccCCceeeeccCCCcceeeeccCCCC
Confidence 34556778889999999999999999743
No 416
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=56.25 E-value=4.4 Score=35.01 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+|+|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999974
No 417
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=56.25 E-value=27 Score=35.33 Aligned_cols=54 Identities=15% Similarity=-0.011 Sum_probs=37.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhc--CCCeEEEECc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLD--RGCHLLVATP 242 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~~IlV~TP 242 (308)
..+||.|.|.+-++.+.+.++.. ++.+.+++|.....+...... ....|+|+|.
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~----Gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKR----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN 516 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHT----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred CcEEEEECCHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 34899999999999988887774 688888988854333211111 2247999993
No 418
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=56.16 E-value=5.2 Score=33.94 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45899999999999754
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.01 E-value=4.6 Score=33.98 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.+-++|++||--.-+|......+..++..+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 345678888887777776666666666554
No 420
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=55.98 E-value=4.8 Score=38.00 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHHhhH--hcCCCEEEEccCCCchhHHh
Q psy12758 60 PPQFDDIQMTEIITNNIALAR--YDKPTPVQKYAIPVI--ISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 60 ~~~f~~l~l~~~l~~~L~~~~--~~~pt~iQ~~~ip~i--~~g~d~lv~a~TGsGKTla~ 115 (308)
+.+|+++.-.+..+..|...- +..|. .+..+ .-.+.+++.+|+|+|||+..
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHH
Confidence 358999876776666665431 11111 11111 01246999999999999854
No 421
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=55.96 E-value=4.8 Score=32.37 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|.-+++.++.|||||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 456899999999999854
No 422
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=55.88 E-value=4.6 Score=34.36 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=21.9
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.+-++|++||-=.-+|......+..++..+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 345678999988888876666666666655
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=55.80 E-value=4.4 Score=31.82 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=11.2
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=55.76 E-value=5.4 Score=32.17 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+++.++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999854
No 425
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=55.46 E-value=4.7 Score=34.57 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+|+|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999974
No 426
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=55.34 E-value=2.2 Score=42.86 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCccCCCCCHHHHHHHHHCC-C--CCCcHHHHHHHhhHhcCCCEEEEccCCCchhHHh
Q psy12758 61 PQFDDIQMTEIITNNIALAR-Y--DKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 61 ~~f~~l~l~~~l~~~L~~~~-~--~~pt~iQ~~~ip~i~~g~d~lv~a~TGsGKTla~ 115 (308)
.+|++++-.+.+.+.|.+.- + ..|..... ..+..++.+++.+|+|+|||...
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLK---FGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC---CCCCCCCCCCCBCCTTSSHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHh---cCCCCCceeEEECCCCCCHHHHH
Confidence 57888876667777776531 1 11111000 01234678999999999999854
No 427
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=55.27 E-value=5.6 Score=32.07 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.+.-+++.++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 428
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=55.14 E-value=7.6 Score=34.01 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=17.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPILN 121 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpil~ 121 (308)
.|.=+++.|++|+|||...+--+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4466899999999999754443333
No 429
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=55.12 E-value=5.7 Score=31.35 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=12.9
Q ss_pred EEEEccCCCchhHHh
Q psy12758 101 VMACAQTGSGKTAAF 115 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ 115 (308)
+++.++.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 430
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=55.01 E-value=5.6 Score=33.93 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+-++|++||.-.-+|......+..++..+
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 34568888888888776666666666665
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=54.89 E-value=5.8 Score=31.48 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHh
Q psy12758 101 VMACAQTGSGKTAAF 115 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ 115 (308)
+++.++.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 432
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=54.87 E-value=5 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+|+|+|||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999974
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=54.80 E-value=5.6 Score=33.65 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=21.9
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.+-++|++||.-.-+|......+..++..+
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455678889888888876666666666665
No 434
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=54.52 E-value=5.5 Score=32.20 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+.+.+++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999754
No 435
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=54.45 E-value=6.4 Score=32.05 Aligned_cols=26 Identities=46% Similarity=0.577 Sum_probs=22.2
Q ss_pred cccccccchHHHHHHHHHHHHHHhhh
Q psy12758 147 LGLVLAPTRELATQIYDEAKKFAYRS 172 (308)
Q Consensus 147 ~~li~~pt~~l~~q~~~~~~~~~~~~ 172 (308)
+++|++|+++|+.|+++.++++....
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHM 109 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccc
Confidence 37999999999999999999875443
No 436
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.43 E-value=5.9 Score=34.74 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|.-+.+.+++|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456888999999999753
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.28 E-value=5.9 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+..+++.++.|||||...
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999754
No 438
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=54.16 E-value=4.7 Score=31.60 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.4
Q ss_pred hcCCCEEEEccCCCchhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla 114 (308)
..|.-+.+.++.|+|||.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566678999999999973
No 439
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=54.11 E-value=5.1 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+|+|+|||.-+
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999743
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=54.09 E-value=4.4 Score=32.26 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.9
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999754
No 441
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=54.07 E-value=5.2 Score=34.23 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+++|+|||.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999843
No 442
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=54.06 E-value=6.2 Score=33.30 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+++|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 443
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.98 E-value=5.2 Score=35.02 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+++|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456789999999999754
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=53.91 E-value=4.9 Score=40.33 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.++.+++.+|+|||||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999754
No 445
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=53.77 E-value=5.3 Score=34.04 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+|+|+|||..
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567788999999999984
No 446
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=53.54 E-value=17 Score=36.53 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=37.3
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhhc--CCCeEEEECc
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLD--RGCHLLVATP 242 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~~IlV~TP 242 (308)
..+||.|.|++-++.+.+.++.. ++.+.+++|.....+...... ....|+|+|.
T Consensus 442 qpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred CCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 44899999999999988888774 677888888754333221111 2237999994
No 447
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=53.52 E-value=5.3 Score=33.95 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+|+|+|||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999974
No 448
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=53.51 E-value=8.7 Score=38.06 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q psy12758 100 DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 100 d~lv~a~TGsGKTla~l 116 (308)
.+++.+|||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998653
No 449
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=53.45 E-value=30 Score=30.95 Aligned_cols=20 Identities=45% Similarity=0.438 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12758 97 SGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~l 116 (308)
.|.-+++.+|+|+|||...+
T Consensus 60 ~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999997443
No 450
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=53.35 E-value=5.4 Score=34.26 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.+-++|++||.-.-+|......+..++..+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 455678888888777776666666666655
No 451
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.31 E-value=5.8 Score=39.26 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhH
Q psy12758 98 GRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~l 116 (308)
+.++++.+++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4789999999999998643
No 452
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.19 E-value=6 Score=45.63 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=17.1
Q ss_pred HhcCCCEEEEccCCCchhHH
Q psy12758 95 IISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla 114 (308)
+..|+.++++||||||||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 44678999999999999953
No 453
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=52.97 E-value=7 Score=33.02 Aligned_cols=29 Identities=28% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+-++|++||.-.-+|......+..++..+
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 34578899988888877667777777665
No 454
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=52.91 E-value=5.3 Score=33.63 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.9
Q ss_pred hcCCCEEEEccCCCchhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla 114 (308)
..|.-+.+.+|+|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999984
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=52.90 E-value=6 Score=32.20 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 456
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=52.58 E-value=5.7 Score=34.02 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q psy12758 97 SGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla 114 (308)
.|.-+.+.+|+|+|||.-
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 567788999999999984
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=52.52 E-value=6.3 Score=34.93 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCCceEEechhhhcccCCCHHHHHHHHHhcCCCCCCCceEEEEee
Q psy12758 256 LANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301 (308)
Q Consensus 256 l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~~~~~~~q~i~~SA 301 (308)
..+-++|++||--.-+|......+..++..+. ....++++.|-
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~---~~~~~vi~~sH 312 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYL---KKIPQVILVSH 312 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG---GGSSEEEEEES
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hcCCEEEEEEC
Confidence 35667899999999999776666666666542 22457777664
No 458
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=52.49 E-value=7.3 Score=33.33 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=21.8
Q ss_pred CCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 258 NCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 258 ~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
+-++|++||--.-+|......+..++..+
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 34578999998888877667777777665
No 459
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=52.47 E-value=6.6 Score=31.98 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
.-+.+.++.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 460
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=52.28 E-value=6.7 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 461
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=52.19 E-value=5.7 Score=34.33 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCchhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla 114 (308)
..|.-+.+.+|+|+|||.-
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567788999999999974
No 462
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=52.18 E-value=19 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=18.1
Q ss_pred CceEEechhhhccc-------CCCHHHHHHHHH
Q psy12758 259 CRFLVLDEADRMLD-------MGFEPQIRCIVQ 284 (308)
Q Consensus 259 ~~~lViDEad~ll~-------~~f~~~l~~i~~ 284 (308)
-.+|||||+|.+.. ......+..++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~ 148 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc
Confidence 45799999999973 345556666554
No 463
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=52.10 E-value=6.4 Score=31.40 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 464
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=51.99 E-value=6.8 Score=32.01 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999754
No 465
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.70 E-value=5.1 Score=33.79 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+.-+++.+++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999753
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=51.49 E-value=5.4 Score=35.04 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCchhHH
Q psy12758 96 ISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla 114 (308)
..|.-+.+.+|+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3678899999999999984
No 467
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.42 E-value=6.4 Score=39.68 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.+|||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999864
No 468
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=51.29 E-value=7.8 Score=34.04 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=17.1
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q psy12758 98 GRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~llpi 119 (308)
|.-+++.+++|+|||...+--+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4678999999999997654433
No 469
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.10 E-value=5.4 Score=41.54 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=29.1
Q ss_pred cccccchHHHHHHHHHHHHHHhhhcCCccccccccccccccccC
Q psy12758 149 LVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAP 192 (308)
Q Consensus 149 li~~pt~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 192 (308)
+|++||++|+.|+++.+++...................++|.+|
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tp 274 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT 274 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEH
T ss_pred EEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeCh
Confidence 57899999999999999997654333323333333355566555
No 470
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=50.90 E-value=9.5 Score=37.71 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q psy12758 100 DVMACAQTGSGKTAAFL 116 (308)
Q Consensus 100 d~lv~a~TGsGKTla~l 116 (308)
++++.+|+|+|||...-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999998653
No 471
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.78 E-value=7.2 Score=32.68 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
+..+++.++.|||||...
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999754
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.55 E-value=6.7 Score=35.39 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=20.9
Q ss_pred CCceEEechhhhcccC---CCHHHHHHHHHhc
Q psy12758 258 NCRFLVLDEADRMLDM---GFEPQIRCIVQEN 286 (308)
Q Consensus 258 ~~~~lViDEad~ll~~---~f~~~l~~i~~~l 286 (308)
.-.++|+||||.++.. .+.+.+..+++..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~ 293 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI 293 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHh
Confidence 3568999999999963 2455667776654
No 473
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=50.50 E-value=1e+02 Score=26.04 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=49.5
Q ss_pred cccccccCCHHhHHHHHHHHHHhhhcCCCceEEEecCCchhHhHHhh---cC--CCe-EEEECcHHHHHHHHcCCcCCCC
Q psy12758 185 PLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDL---DR--GCH-LLVATPGRLVDMLERGKIGLAN 258 (308)
Q Consensus 185 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~--~~~-IlV~TP~~L~~~l~~~~~~l~~ 258 (308)
.++||.+.++..+..+...+.... ++.+..++|+.+.......+ .. .+. ++++|- .....+++..
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~------~~g~Glnl~~ 183 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK------AGGFGINLTS 183 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC------TTCCCCCCTT
T ss_pred CeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh------hhcCCcCccc
Confidence 578999999998888888776632 56778889988765554333 22 345 566664 2234567778
Q ss_pred CceEEechh
Q psy12758 259 CRFLVLDEA 267 (308)
Q Consensus 259 ~~~lViDEa 267 (308)
++++|+=+.
T Consensus 184 a~~VI~~d~ 192 (271)
T 1z5z_A 184 ANRVIHFDR 192 (271)
T ss_dssp CSEEEECSC
T ss_pred CCEEEEECC
Confidence 888775433
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=50.46 E-value=13 Score=31.22 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=17.7
Q ss_pred CEEEEccCCCchhHHhHHHHHHH
Q psy12758 100 DVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 100 d~lv~a~TGsGKTla~llpil~~ 122 (308)
++++.++.|+|||...+--....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999998765444433
No 475
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=50.18 E-value=7 Score=31.11 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=12.6
Q ss_pred CEEEEccCCCchhHH
Q psy12758 100 DVMACAQTGSGKTAA 114 (308)
Q Consensus 100 d~lv~a~TGsGKTla 114 (308)
-+.+.+++|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 476
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=50.10 E-value=7.5 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+-+.+++|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445778999999999864
No 477
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.96 E-value=6.8 Score=39.27 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHh
Q psy12758 99 RDVMACAQTGSGKTAAF 115 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla~ 115 (308)
+.+++.+|+|||||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999764
No 478
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=49.71 E-value=9.4 Score=33.13 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHH
Q psy12758 98 GRDVMACAQTGSGKTAA 114 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla 114 (308)
|+.+++.|+.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 57899999999999974
No 479
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.46 E-value=7.6 Score=33.72 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+.+.+++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.40 E-value=10 Score=35.82 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=22.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHh
Q psy12758 95 IISGRDVMACAQTGSGKTAAFLVPILNQMYE 125 (308)
Q Consensus 95 i~~g~d~lv~a~TGsGKTla~llpil~~l~~ 125 (308)
+..|.-+.+.+++|||||.....-++.-+..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3457889999999999998665544444443
No 481
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=49.39 E-value=6.4 Score=34.24 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+++|+|||..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5777889999999999843
No 482
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=49.36 E-value=34 Score=27.00 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=11.5
Q ss_pred EEccCCCchhHHhHHHH
Q psy12758 103 ACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 103 v~a~TGsGKTla~llpi 119 (308)
....-|+|||....--.
T Consensus 7 ~s~kgG~GKTt~a~~la 23 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIA 23 (206)
T ss_dssp CCSSTTSSHHHHHHHHH
T ss_pred EeCCCCccHHHHHHHHH
Confidence 34678899997654433
No 483
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=49.34 E-value=7.6 Score=33.35 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+++.+++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 484
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=49.33 E-value=4.3 Score=32.79 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.8
Q ss_pred EEEEccCCCchhHHh
Q psy12758 101 VMACAQTGSGKTAAF 115 (308)
Q Consensus 101 ~lv~a~TGsGKTla~ 115 (308)
+++.++.|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 688999999999743
No 485
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=49.32 E-value=76 Score=29.84 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHhhHh---cCCCEEEEccCCCchhHHhHHHHHHHHH
Q psy12758 89 KYAIPVII---SGRDVMACAQTGSGKTAAFLVPILNQMY 124 (308)
Q Consensus 89 ~~~ip~i~---~g~d~lv~a~TGsGKTla~llpil~~l~ 124 (308)
..+|..+. .|+-..+.|+.|+|||...+=-|.+...
T Consensus 150 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred ceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 45565544 6888999999999999876555555443
No 486
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.80 E-value=7.9 Score=34.41 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=17.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q psy12758 97 SGRDVMACAQTGSGKTAAFLVPI 119 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~llpi 119 (308)
.|+-+++.+++|+|||...+--+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45667999999999997554433
No 487
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=48.65 E-value=50 Score=31.12 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=21.7
Q ss_pred CceEEEecCCchhHhHHhhcCCCeEEEECcH
Q psy12758 213 LRPCVVYGGSNVGDQMRDLDRGCHLLVATPG 243 (308)
Q Consensus 213 ~~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 243 (308)
-++.++..+.....+.+.+..++.|||+|-.
T Consensus 236 ~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 236 PRSLLILDDVWDSWVLKAFDSQCQILLTTRD 266 (591)
T ss_dssp TTCEEEEEEECCHHHHHTTCSSCEEEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCeEEEECCC
Confidence 3456666666666666777778899999853
No 488
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.33 E-value=7.6 Score=31.85 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+++.+|+||||+...
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999998643
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=48.09 E-value=9.3 Score=30.81 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q psy12758 97 SGRDVMACAQTGSGKTAAFL 116 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~l 116 (308)
.|+-+++.+++|+|||...+
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 46789999999999996543
No 490
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=47.75 E-value=8.9 Score=30.53 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.2
Q ss_pred CCEEEEccCCCchhHH
Q psy12758 99 RDVMACAQTGSGKTAA 114 (308)
Q Consensus 99 ~d~lv~a~TGsGKTla 114 (308)
+-+++.+++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3478899999999974
No 491
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=47.63 E-value=8.4 Score=33.83 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|.-+.+.+++|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3455788999999999754
No 492
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=47.20 E-value=5.9 Score=39.62 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=53.0
Q ss_pred cccccccCCHHhHH-----HHHHHHHHhhh-c-CCCceEEEecCCchhHhHHh---h-cCCCeEEEECcHHHHHHHHcCC
Q psy12758 185 PLGLVLAPTRELAT-----QIYDEAKKFAY-R-SQLRPCVVYGGSNVGDQMRD---L-DRGCHLLVATPGRLVDMLERGK 253 (308)
Q Consensus 185 ~~~lil~PtreL~~-----qi~~~~~~~~~-~-~~~~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~ 253 (308)
.+++|+||+.+-.. ........+.. . .++++..++|+....+.... . ....+|+|||. +-...
T Consensus 579 ~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~------vie~G 652 (780)
T 1gm5_A 579 GQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT------VIEVG 652 (780)
T ss_dssp CCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS------CCCSC
T ss_pred CcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC------CCCcc
Confidence 56888998764321 11222222332 1 25778888998765444332 2 34579999995 33455
Q ss_pred cCCCCCceEEechhhhcccCCCHHHHHHHHHhcCC
Q psy12758 254 IGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGM 288 (308)
Q Consensus 254 ~~l~~~~~lViDEad~ll~~~f~~~l~~i~~~l~~ 288 (308)
+++.+++++|+..+++. + ..++.+...+...
T Consensus 653 IDiP~v~~VIi~d~~r~---~-l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 653 IDVPRANVMVIENPERF---G-LAQLHQLRGRVGR 683 (780)
T ss_dssp SCCTTCCEEEBCSCSSS---C-TTHHHHHHHTSCC
T ss_pred ccCCCCCEEEEeCCCCC---C-HHHHHHHhcccCc
Confidence 77889999998887753 1 1345555555543
No 493
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.12 E-value=7.5 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHHh
Q psy12758 98 GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 98 g~d~lv~a~TGsGKTla~ 115 (308)
|.-+.+.+++|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345789999999999854
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=47.05 E-value=8.8 Score=31.05 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
-+.+.++.|||||...
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 495
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=46.89 E-value=11 Score=33.56 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=19.7
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHH
Q psy12758 96 ISGRDVMACAQTGSGKTAAFLVPILNQ 122 (308)
Q Consensus 96 ~~g~d~lv~a~TGsGKTla~llpil~~ 122 (308)
..|+-+++.+++|+|||...+-.+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346778999999999998655444433
No 496
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=46.77 E-value=6 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=14.8
Q ss_pred HHHHHhhHhcCCCEEEEccCCCchhHH
Q psy12758 88 QKYAIPVIISGRDVMACAQTGSGKTAA 114 (308)
Q Consensus 88 Q~~~ip~i~~g~d~lv~a~TGsGKTla 114 (308)
+...-+.-...-.+++.+.+|+|||..
T Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 11 SSGLVPRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp ----------CEEEEEEEETTSSHHHH
T ss_pred cCCccCCCCceeEEEEECCCCCCHHHH
Confidence 333333344445899999999999973
No 497
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=46.37 E-value=8.7 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q psy12758 97 SGRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 97 ~g~d~lv~a~TGsGKTla~ 115 (308)
.|+-+++.+|+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999998743
No 498
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=46.27 E-value=9.3 Score=32.65 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=20.6
Q ss_pred CCCceEEechhhhcccCCCHHHHHHHHHhc
Q psy12758 257 ANCRFLVLDEADRMLDMGFEPQIRCIVQEN 286 (308)
Q Consensus 257 ~~~~~lViDEad~ll~~~f~~~l~~i~~~l 286 (308)
.+-++|++||--.-+|......+..++..+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 344568888888777776666666666665
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.80 E-value=8.3 Score=33.05 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=13.3
Q ss_pred CEEEEccCCCchhHHh
Q psy12758 100 DVMACAQTGSGKTAAF 115 (308)
Q Consensus 100 d~lv~a~TGsGKTla~ 115 (308)
.+.+.+++|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=45.65 E-value=46 Score=29.19 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHCCCC-----CCcHHHHHHH-hhHhc----------------CCCEEEEccCCCchhHHh
Q psy12758 67 QMTEIITNNIALARYD-----KPTPVQKYAI-PVIIS----------------GRDVMACAQTGSGKTAAF 115 (308)
Q Consensus 67 ~l~~~l~~~L~~~~~~-----~pt~iQ~~~i-p~i~~----------------g~d~lv~a~TGsGKTla~ 115 (308)
..++.+++..++.|+. .+|.--...+ ..+.. |+-+++.++.|+|||...
T Consensus 91 ~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a 161 (314)
T 1ko7_A 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETA 161 (314)
T ss_dssp CCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHH
Confidence 3588888888888765 2222222222 22222 788999999999997544
Done!