RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12758
(308 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 139 bits (351), Expect = 1e-40
Identities = 120/246 (48%), Positives = 153/246 (62%), Gaps = 46/246 (18%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122
FD++++ I NNI LA Y +PTP+QK AIP I+ RD+MACAQTGSGKTAAFL+PI+N
Sbjct: 23 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 82
Query: 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182
+ + + K
Sbjct: 83 LVCQDLNQQRYS----------------------------------------------KT 96
Query: 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242
+P L+LAPTRELA QI E++KF+ + LR CVVYGG++ Q+R++ GCHLLVATP
Sbjct: 97 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATP 156
Query: 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302
GRLVD +E+ KI L C+++VLDEADRMLDMGFEPQIR I++E+ MP +RQTLMFSAT
Sbjct: 157 GRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT 216
Query: 303 FPKEIQ 308
FPKEIQ
Sbjct: 217 FPKEIQ 222
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 138 bits (349), Expect = 1e-40
Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 62/247 (25%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGR-DVMACAQTGSGKTAAFLVPILN 121
F+++ +++ I N I ++KPT +Q IP+ ++ +++A A+TGSGKTA+F +P++
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 122 QMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRK 181
+ E + ++L PTRELA Q+ DE + L+
Sbjct: 66 LVNENNGIEA-----------------IILTPTRELAIQVADEIESLKGNKNLK------ 102
Query: 182 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241
+YGG + Q++ L + +++V T
Sbjct: 103 ---------------------------------IAKIYGGKAIYPQIKAL-KNANIVVGT 128
Query: 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301
PGR++D + RG + L N ++ +LDEAD ML+MGF + I+ + D++ L+FSA
Sbjct: 129 PGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNA--CNK--DKRILLFSA 184
Query: 302 TFPKEIQ 308
T P+EI
Sbjct: 185 TMPREIL 191
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 118 bits (297), Expect = 8e-33
Identities = 68/246 (27%), Positives = 99/246 (40%), Gaps = 58/246 (23%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122
FDD+ ++E + I ++KP+ +Q+ AI I G DV+A AQ+G+GKTA F + IL Q
Sbjct: 14 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 73
Query: 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182
+ LVLAPTRELA QI
Sbjct: 74 IE----------------LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH----- 112
Query: 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242
+ G + + + H++V TP
Sbjct: 113 ---------------------------------ACIGGTNVRAEVQKLQMEAPHIIVGTP 139
Query: 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302
GR+ DML R + + VLDEAD ML GF+ QI I Q+ + + Q ++ SAT
Sbjct: 140 GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK--LNS--NTQVVLLSAT 195
Query: 303 FPKEIQ 308
P ++
Sbjct: 196 MPSDVL 201
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 115 bits (289), Expect = 1e-31
Identities = 70/252 (27%), Positives = 106/252 (42%), Gaps = 59/252 (23%)
Query: 57 LPLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFL 116
+ + P FD + + E + I ++KP+ +Q+ AI II GRDV+A +Q+G+GKTA F
Sbjct: 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 72
Query: 117 VPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRP 176
+ +L + + L+LAPTRELA QI ++
Sbjct: 73 ISVLQCLD----------------IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQC 116
Query: 177 CVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCH 236
G+ +R LD G H
Sbjct: 117 HACIGGTNV---------------------------------------GEDIRKLDYGQH 137
Query: 237 LLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQT 296
++ TPGR+ DM+ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 138 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY--LPP--ATQV 193
Query: 297 LMFSATFPKEIQ 308
++ SAT P EI
Sbjct: 194 VLISATLPHEIL 205
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 112 bits (281), Expect = 1e-30
Identities = 61/248 (24%), Positives = 101/248 (40%), Gaps = 60/248 (24%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122
F D + + I ++ P+ VQ IP I G DV+ A++G GKTA F++ L Q
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182
+ LV+ TRELA QI E ++F+
Sbjct: 63 LE----------------PVTGQVSVLVMCHTRELAFQISKEYERFSK------------ 94
Query: 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDR-GCHLLVAT 241
Y ++ V +GG ++ L + H++V T
Sbjct: 95 --------------------------YMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 128
Query: 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLD-MGFEPQIRCIVQENGMPRTGDRQTLMFS 300
PGR++ + + L + + +LDE D+ML+ + ++ I + P ++Q +MFS
Sbjct: 129 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM--TPH--EKQVMMFS 184
Query: 301 ATFPKEIQ 308
AT KEI+
Sbjct: 185 ATLSKEIR 192
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 111 bits (279), Expect = 3e-30
Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 60/246 (24%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122
FDD+++ E + + +++P+ +Q+ AI II G DV+A AQ+G+GKT F + L +
Sbjct: 12 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 71
Query: 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182
+ P L+LAPTRE
Sbjct: 72 I----------------DTSVKAPQALMLAPTRE-------------------------- 89
Query: 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242
+ G + + R ++V TP
Sbjct: 90 --------------LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTP 135
Query: 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302
GR+ D ++R + + +LDEAD ML GF+ QI I +P Q ++ SAT
Sbjct: 136 GRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL--LPP--TTQVVLLSAT 191
Query: 303 FPKEIQ 308
P ++
Sbjct: 192 MPNDVL 197
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 109 bits (274), Expect = 3e-29
Identities = 35/257 (13%), Positives = 67/257 (26%), Gaps = 73/257 (28%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122
+D + E + +P +QK I+ A A TG GKT+ L L
Sbjct: 25 PEDFLLKEFV--EFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLF- 81
Query: 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182
V+ PT L Q + +K+A ++ + +
Sbjct: 82 ------------------LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLI-- 121
Query: 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242
Y + + +++ T
Sbjct: 122 ----------------GYYHGRIPKREKENFMQNLRN---------------FKIVITTT 150
Query: 243 GRLVDMLERGKIGLANCRFLVLDEADRMLD-----------MGFEPQIRCIVQENGMPRT 291
L L + F+ +D+ D +L +GF ++
Sbjct: 151 QFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEA--- 203
Query: 292 GDRQTLMFSATFPKEIQ 308
++ +AT K +
Sbjct: 204 -RGCLMVSTATAKKGKK 219
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 105 bits (263), Expect = 4e-28
Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 58/247 (23%)
Query: 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILN 121
+F+D + + I ++KP+P+Q+ +IP+ +SGRD++A A+ G+GK+ A+L+P+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 122 QMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRK 181
++ KK +V+ PTRELA Q+ +
Sbjct: 64 RLD----------------LKKDNIQAMVIVPTRELALQVSQICIQV------------- 94
Query: 182 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241
+ + GG+N+ D + LD H+++AT
Sbjct: 95 -------------------------SKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIAT 129
Query: 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301
PGR++D++++G + + + +VLDEAD++L F + I+ +P+ +RQ L++SA
Sbjct: 130 PGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT--LPK--NRQILLYSA 185
Query: 302 TFPKEIQ 308
TFP +Q
Sbjct: 186 TFPLSVQ 192
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 95.5 bits (236), Expect = 4e-24
Identities = 33/228 (14%), Positives = 57/228 (25%), Gaps = 61/228 (26%)
Query: 81 YDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPS 140
Y + P Q+ I ++SGRD + TG GK+ + +P L
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN----------------- 65
Query: 141 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQI 200
L +V++P L D
Sbjct: 66 -----GLTVVVSPLISLMKDQVD------------------------------------- 83
Query: 201 YDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCR 260
+ + + + LL P RL+ + N
Sbjct: 84 --QLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141
Query: 261 FLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEIQ 308
L +DEA + G + + R + +AT +
Sbjct: 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTR 189
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 91.6 bits (226), Expect = 1e-22
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 59/246 (23%)
Query: 63 FDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQ 122
F+D + + I A ++KP+P+Q+ AIPV I+GRD++A A+ G+GKTAAF++P L +
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 123 MYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKK 182
+ + ++ PTRELA Q + +
Sbjct: 63 VKPKLNKIQAL----------------IMVPTRELALQTSQVVRTLGKHCGIS------- 99
Query: 183 VFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATP 242
V GG+N+ D + L+ H+LV TP
Sbjct: 100 --------------------------------CMVTTGGTNLRDDILRLNETVHILVGTP 127
Query: 243 GRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSAT 302
GR++D+ R L++C ++DEAD+ML F+ I I+ +P Q+L+FSAT
Sbjct: 128 GRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF--LPP--THQSLLFSAT 183
Query: 303 FPKEIQ 308
FP ++
Sbjct: 184 FPLTVK 189
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 85.8 bits (211), Expect = 1e-20
Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 65/245 (26%)
Query: 62 QFDDIQ--MTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPI 119
+ +++ ++ + ++ P Q A+ + SG++++ T +GKT + +
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 120 LNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 179
+ + + G L + P R LA + Y+ KK+
Sbjct: 62 VREAIKGGK-------------------SLYVVPLRALAGEKYESFKKW----------- 91
Query: 180 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLV 239
+ LR + G + + C ++V
Sbjct: 92 -----------------------------EKIGLRIGISTGD---YESRDEHLGDCDIIV 119
Query: 240 ATPGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMF 299
T + ++ + LV+DE + + +V + + +
Sbjct: 120 TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK-ALRVIGL 178
Query: 300 SATFP 304
SAT P
Sbjct: 179 SATAP 183
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 85.5 bits (210), Expect = 2e-20
Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 55/247 (22%)
Query: 62 QFDDIQMTEIITNNIALARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILN 121
QF I I R+ KPT +Q+ IP + G ++ +QTG+GKT A+L+PI+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 122 QMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRK 181
++ P
Sbjct: 62 KIK---------------------------------------------------PERAEV 70
Query: 182 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVAT 241
+ ++ + K + + GG++ + L+ H+++ T
Sbjct: 71 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGT 130
Query: 242 PGRLVDMLERGKIGLANCRFLVLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSA 301
PGR+ D + + + LV+DEAD MLDMGF + I MP+ D Q L+FSA
Sbjct: 131 PGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR--MPK--DLQMLVFSA 186
Query: 302 TFPKEIQ 308
T P++++
Sbjct: 187 TIPEKLK 193
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 78.0 bits (191), Expect = 3e-17
Identities = 30/215 (13%), Positives = 55/215 (25%), Gaps = 73/215 (33%)
Query: 94 VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAP 153
+ R + G+GKT +L I+ + +RG + L+LAP
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGL--------------RT----LILAP 46
Query: 154 TRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQL 213
TR +A ++ + + R Q
Sbjct: 47 TRVVAAEMEEALRGLPIRYQTP-------------------------------------- 68
Query: 214 RPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFLVLDEADRMLDM 273
+R G ++ M I + N +++DEA
Sbjct: 69 -------------AIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPA 115
Query: 274 GFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEIQ 308
R + + + +AT P
Sbjct: 116 SI--AARGYISTRVEMG--EAAGIFMTATPPGSRD 146
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 56.7 bits (135), Expect = 3e-10
Identities = 31/226 (13%), Positives = 61/226 (26%), Gaps = 63/226 (27%)
Query: 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRK 142
+P Q+ + + TG GKT ++ ++ + G
Sbjct: 9 QPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL----------- 56
Query: 143 KVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYD 202
+LAPT+ L Q + ++
Sbjct: 57 -------MLAPTKPLVLQHAESFRRLFNLPP----------------------------- 80
Query: 203 EAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKIGLANCRFL 262
V G ++ ++VATP + + L G+I L + +
Sbjct: 81 -----------EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLI 129
Query: 263 VLDEADRMLDMGFEPQIRCIVQENGMPRTGDRQTLMFSATFPKEIQ 308
V DEA R + I + + + +A+ +
Sbjct: 130 VFDEAHRAVGNYAYVFIAREYKRQA----KNPLVIGLTASPGSTPE 171
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.1 bits (74), Expect = 0.016
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 94 VIISGRDVMACAQTGSGKTAAFLVPILNQMYERGP 128
++ G + G+GKT FL IL + R
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRL 37
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 29.5 bits (65), Expect = 0.44
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 83 KPTPVQKYAIPVIISGRDVMACAQTGSGKT 112
Q+ A+ + + TGSGKT
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKT 99
>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 533
Score = 29.5 bits (66), Expect = 0.58
Identities = 5/54 (9%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 43 NQPSGGRNSTDTFLL----PLPPQFDDIQMTEIITNNIALARYDKPTPVQKYAI 92
+ + +L + + N+ + Y+K ++K
Sbjct: 478 SNYIENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIFT 531
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.5 bits (62), Expect = 1.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 78 LARYDKPTPVQKYAIPVIISGRDVMACAQTGSGKTA 113
L + P Y +P +++G + G+GK+
Sbjct: 9 LEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSM 44
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 28.2 bits (62), Expect = 1.2
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 27/91 (29%)
Query: 83 KPTPVQKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRG 137
+P Q AI ++ G + TG+GKT ++ + + PT
Sbjct: 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTF-----TISNVIAQVNKPT------ 59
Query: 138 YPSRKKVFPLGLVLAPTRELATQIYDEAKKF 168
LV+A + LA Q+Y E K+F
Sbjct: 60 -----------LVIAHNKTLAGQLYSELKEF 79
>d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces
lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]}
Length = 269
Score = 27.9 bits (61), Expect = 1.6
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 195 ELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLVATPGRLVDMLERGKI 254
E++ ++++ FA S C + G + C + + E +
Sbjct: 1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGV 60
Query: 255 GLANCRFLVLDEADRMLDMGF 275
G FL LD ++++ + F
Sbjct: 61 G-DVTGFLALDNTNKLIVLSF 80
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 27.9 bits (61), Expect = 1.7
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 29/97 (29%)
Query: 80 RYDKPTPV--QKYAIPVIISG-----RDVMACAQTGSGKTAAFLVPILNQMYERGPLPTP 132
RY P+P Q AI ++ R V TG+GKT + ++ E P
Sbjct: 3 RYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTV-----TMAKVIEALGRPA- 56
Query: 133 PAGRGYPSRKKVFPLGLVLAPTRELATQIYDEAKKFA 169
LVLAP + LA Q+ E ++
Sbjct: 57 ----------------LVLAPNKILAAQLAAEFRELF 77
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 1.8
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 92 IPVIISGRDVMACAQTGSGKTAAFLVPILNQMYERG 127
+P R ++ TG+GK+ L + RG
Sbjct: 44 MPRDAEPRHLLVNGATGTGKS-VLLRELAYTGLLRG 78
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 27.2 bits (59), Expect = 2.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 149 LVLAPTRELATQIYDEAKKFA 169
+++AP + A +++DE +F
Sbjct: 18 VLIAPDMQNALRLHDEISQFT 38
Score = 27.2 bits (59), Expect = 2.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 188 LVLAPTRELATQIYDEAKKFA 208
+++AP + A +++DE +F
Sbjct: 18 VLIAPDMQNALRLHDEISQFT 38
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 26.9 bits (58), Expect = 3.3
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 21/116 (18%)
Query: 101 VMACAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQ 160
+MA A GSGKT I M E+ P + L + T + A +
Sbjct: 29 IMAGA--GSGKTRVLTHRIAYLMAEKHVAP-----------WNI----LAITFTNKAARE 71
Query: 161 IYDEAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELA----TQIYDEAKKFAYRSQ 212
+ + + + + + ++ + I D + +
Sbjct: 72 MRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKT 127
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 25.2 bits (54), Expect = 6.1
Identities = 15/106 (14%), Positives = 22/106 (20%), Gaps = 22/106 (20%)
Query: 104 CAQTGSGKTAAFLVPILNQMYERGPLPTPPAGRGYPSRKKVFPLGLVLAPTRELATQIYD 163
A TGSGK+ Q Y+ LVL P+
Sbjct: 14 HAPTGSGKSTKVPAAYAAQGYKV----------------------LVLNPSVAATLGFGA 51
Query: 164 EAKKFAYRSQLRPCVVRKKVFPLGLVLAPTRELATQIYDEAKKFAY 209
K VR + + + +
Sbjct: 52 YMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDI 97
>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId:
1905]}
Length = 260
Score = 25.4 bits (54), Expect = 9.2
Identities = 26/142 (18%), Positives = 38/142 (26%), Gaps = 23/142 (16%)
Query: 124 YERGPLPTP---PAGRG-YPSRKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVV 179
YERGP PT A RG Y + + L + IY P
Sbjct: 3 YERGPAPTNASIEASRGPYATSQTSVS---SLVASGFGGGTIY------------YPTST 47
Query: 180 RKKVFPLGLVLAPTRELATQIYDEAKKFAYRSQLRPCVVYGGSNVGDQMRDLDRGCHLLV 239
F ++ + I + A + VV+ + RG LL
Sbjct: 48 ADGTFGAVVISPGFTAYQSSIAWLGPRLAS----QGFVVFTIDTNTTLDQPDSRGRQLLS 103
Query: 240 ATPGRLVDMLERGKIGLANCRF 261
A R ++
Sbjct: 104 ALDYLTQRSSVRTRVDATRLGV 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,141,192
Number of extensions: 54145
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 42
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)