BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12760
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens
GN=SMC4 PE=1 SV=2
Length = 1288
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + +++ YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1103 YLQRVAELDKITYERDSFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1162
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1163 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1210
>sp|Q9ERA5|SMC4_MICAR Structural maintenance of chromosomes protein 4 (Fragment)
OS=Microtus arvalis GN=SMC4 PE=2 SV=1
Length = 1243
Score = 107 bits (266), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1058 YLQRVAELDKITSERDNFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1117
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1118 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1165
>sp|Q8CG47|SMC4_MOUSE Structural maintenance of chromosomes protein 4 OS=Mus musculus
GN=Smc4 PE=1 SV=1
Length = 1286
Score = 107 bits (266), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1101 YLQRVAELDKITSERDNFRQAYEDLRKQRLNEFMAGFYVITNKLKENYQMLTLGGDAELE 1160
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1161 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1208
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + +++ YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1097 YLQRVAELDEITNERDSFRRAYEDLRKQRLNEFMAGFNIITNKLKENYQMLTLGGDAELE 1156
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1157 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1204
>sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes protein 4 OS=Dictyostelium
discoideum GN=smc4 PE=3 SV=1
Length = 1415
Score = 104 bits (259), Expect = 4e-22, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 68/110 (61%)
Query: 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD 141
++Y R E + + YE R EF F I +++E YQM+T GG A+
Sbjct: 1200 QEYHSRKAEFDEIEKERDNLSKRYESLRKNRLDEFMAGFTIITMKLKEIYQMITLGGDAE 1259
Query: 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
LE + DP+ +GI + VRPP+KSWK+I LSGGEKTL+SLALVFALH+Y
Sbjct: 1260 LEIIDREDPFQEGISFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHY 1309
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 103 bits (256), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 68 DVTAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRV 127
D A R EL Y R E+ +V + Y++ +R EF F I ++
Sbjct: 1042 DSIAEYRSKVEL----YNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAGFNTISLKL 1097
Query: 128 QECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFA 187
+E YQM+T GG A+LE + DP+++G+ + VRPP+KSWK+I LSGGEKTL+SLALVFA
Sbjct: 1098 KEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFA 1157
Query: 188 LHYY 191
LH+Y
Sbjct: 1158 LHHY 1161
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis
elegans GN=smc-4 PE=1 SV=1
Length = 1549
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 58/80 (72%)
Query: 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDC 171
R +EF + F IGK + ++MLT GG A LEY + DP+ QGI ++VRP +K+WK I
Sbjct: 1218 RLEEFHSAFEFIGKHLVAVFKMLTDGGDAKLEYIDKDDPFRQGISFMVRPAKKAWKQIQF 1277
Query: 172 LSGGEKTLASLALVFALHYY 191
LSGGEKTL+SLAL+FALH +
Sbjct: 1278 LSGGEKTLSSLALIFALHMF 1297
>sp|P41004|SMC4_SCHPO Structural maintenance of chromosomes protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cut3 PE=1 SV=2
Length = 1324
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/110 (43%), Positives = 68/110 (61%)
Query: 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD 141
++ KR + Q+ L S+R EF F I +++E YQ++T GG A+
Sbjct: 1140 KEAEKRDSDYQSELQKRTDLKKVVTDLQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAE 1199
Query: 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
LE + DP+++G+ + V PP+KSWK+I LSGGEKTL+SLALVFALH Y
Sbjct: 1200 LELVDSLDPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFALHNY 1249
>sp|Q12267|SMC4_YEAST Structural maintenance of chromosomes protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1 SV=1
Length = 1418
Score = 91.7 bits (226), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 81 VRDYAKRSKEMQAVLATLNTYCTGYEQCLS-------KRQKEFDTNFVKIGKRVQECYQM 133
+ +YA+R E + LN ++ KR EF F I ++E YQM
Sbjct: 1225 LEEYARRLAEFKRRKLDLNNAVQKRDEVKEQLGILKKKRFDEFMAGFNIISMTLKEMYQM 1284
Query: 134 LTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+T GG A+LE + DP+++G+ + V PP+KSW++I LSGGEKTL+SLALVFALH Y
Sbjct: 1285 ITMGGNAELELVDSLDPFSEGVTFSVMPPKKSWRNITNLSGGEKTLSSLALVFALHKY 1342
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 OS=Caenorhabditis elegans
GN=dpy-27 PE=1 SV=1
Length = 1469
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEY---SDPYAQGIKYVVRPPRKSWKS 168
R EF +G Q YQ++T GG A L++ E +DP+ GIK+ VRP +KSWK
Sbjct: 1182 RFNEFSEALAFLGTTTQMLYQLITNGGDASLKFVEEGKSTDPFDGGIKFSVRPAKKSWKL 1241
Query: 169 IDCLSGGEKTLASLALVFALHYY 191
I+ LSGGEKTLASL VFA+H+Y
Sbjct: 1242 IENLSGGEKTLASLCFVFAMHHY 1264
>sp|O94383|SMC1_SCHPO Structural maintenance of chromosomes protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm1 PE=1 SV=2
Length = 1228
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLT------FGGKADLEYKEYSDPYAQGIKYVVRPPRK 164
KR ++F F I +++ Y+ LT GG A L + +PY GIK+ PP K
Sbjct: 1065 KRLQKFQAAFSHISEQIDPIYKELTKSPAFPLGGTAYLTLDDLDEPYLGGIKFHAMPPMK 1124
Query: 165 SWKSIDCLSGGEKTLASLALVFALHYY 191
++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1125 RFRDMDQLSGGEKTMAALALLFAIHSY 1151
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 88 SKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT------FGGKAD 141
S+E +A + KR + F F I + + Y+ LT GG A
Sbjct: 1019 SQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYKQLTKSNTHPLGGTAY 1078
Query: 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
L + DP+ GIKY PP K ++ ++ LSGGEKT+A+LAL+F++H Y
Sbjct: 1079 LNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIHSY 1128
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 106 EQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKS 165
E+ +K++K F F +I K ++ + L+ GGKA + DP++ G++ V+P K
Sbjct: 992 EETENKKRKVFLEAFNQINKSLKRIFSFLSPGGKAQMFLDNPEDPFSGGVQLTVKPRGKD 1051
Query: 166 WKSIDCLSGGEKTLASLALVFALHYY 191
+ ++ +SGGEKTLA+L+L+FAL Y
Sbjct: 1052 VQYLEAMSGGEKTLAALSLIFALQEY 1077
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1 SV=1
Length = 1225
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLT---------FGGKADLEYKEYSDPYAQGIKYVVRP 161
KR++ F+ F + + Y+ LT GG A L ++ +P+ GIKY P
Sbjct: 1059 KRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATP 1118
Query: 162 PRKSWKSIDCLSGGEKTLASLALVFALHYY 191
P K +K ++ LSGGEKT+A+LAL+FA++ Y
Sbjct: 1119 PLKRFKDMEYLSGGEKTVAALALLFAINSY 1148
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQTKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus
GN=Smc1a PE=1 SV=1
Length = 1233
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
>sp|Q5H054|SMC_XANOR Chromosome partition protein Smc OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=smc PE=3 SV=2
Length = 1167
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 44 IHTTPRSANTMAPASKWRSPVSGSD-VTAAVRPTPELPVRDY---AKRSKEMQAVLATLN 99
++ P SAN PA +W + V D + P +++Y A+RS+ + A LN
Sbjct: 937 VNGLPESAN---PA-EWEATVGQIDGRMRRLEPVNLAAIQEYGEAAQRSEYLDAQNLDLN 992
Query: 100 TYCTGYEQCLSKRQKE----FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGI 155
T E+ + K +E F F ++ VQ Y L GG A LE D G+
Sbjct: 993 TALETLEEAIRKIDRETRGRFKDTFDRVNSGVQALYPRLFGGGHAYLELTG-EDLLDTGV 1051
Query: 156 KYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
+ RPP K SI LSGGEK + ++ALVFA+
Sbjct: 1052 TIMARPPGKRVSSISLLSGGEKAMTAVALVFAI 1084
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc PE=3
SV=1
Length = 1199
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQML--TFGGKADLEYKEYSDPYAQGIKYVVRPP 162
Y Q +S+ QK F+K RV E Y+ + GG L + DP++ G+ P
Sbjct: 1042 YLQLISEVQKRKKETFMKTYDRVAENYEQIYGEIGGNGKLSLENEEDPFSGGLLIDASPM 1101
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALH 189
K +++D +SGGEK+L +LA +FA+
Sbjct: 1102 NKQLQNLDVMSGGEKSLTALAFLFAIQ 1128
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y S++ + + NT E+ + K F+ FV+I + ++ L GG+A+L
Sbjct: 1001 YKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELR 1060
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
+ +D G++ + +PP K ++++ LSGGE+ L ++AL+F++
Sbjct: 1061 LTDPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSI 1105
>sp|B9E1H0|SMC_CLOK1 Chromosome partition protein Smc OS=Clostridium kluyveri (strain NBRC
12016) GN=smc PE=3 SV=1
Length = 1185
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 83 DYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADL 142
D K +E++ V+ + K + F NFVK+ K + ++ L GG ADL
Sbjct: 1018 DLIKSKQELKKVIDAMT----------EKMKGVFKENFVKLKKNFNDTFRELFKGGSADL 1067
Query: 143 EYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
+ D I V+PP K ++I+ +SGGEK L+++AL+FA+
Sbjct: 1068 VLTK-GDELTGNIDITVQPPGKKLQNINLMSGGEKGLSAIALLFAM 1112
>sp|B8GZ28|SMC_CAUCN Chromosome partition protein Smc OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=smc PE=1 SV=1
Length = 1147
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 68 DVTAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCT----GYEQCLSKRQKEFDTNFVKI 123
D V E ++YA R + M++ A L+ T G E+ ++ ++ F I
Sbjct: 939 DAIGPVNLRAEEEAQEYAGRLETMRSERADLSGAVTKLRAGIEELNAEGRERLLAAFDVI 998
Query: 124 GKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLA 183
Q +Q L GG+A+L+ E DP G++ PP K S+ +SGGE+ L + A
Sbjct: 999 NANFQTLFQALFGGGQAELKLIESDDPLEAGLEIFACPPGKRMASMSLMSGGEQALTASA 1058
Query: 184 LVFAL 188
L+F +
Sbjct: 1059 LIFGV 1063
>sp|P73340|SMC_SYNY3 Chromosome partition protein Smc OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=smc PE=3 SV=1
Length = 1200
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKR-------SKEMQAVLATLNTYCTGYEQCLSKRQ 113
RS +G A+ P L +++Y K S+++Q + E + R+
Sbjct: 994 RSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTIAGERTELLLRIENFTTLRR 1053
Query: 114 KEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLS 173
+ F F + K Q + L+ G L+ + DP+ G+ V P K + + +S
Sbjct: 1054 RSFQDAFDAVNKNFQIIFAELS-DGDGYLQLDDAEDPFNGGLNLVAHPKGKPVRRLSSMS 1112
Query: 174 GGEKTLASLALVFALHYY 191
GGEK+L +L+ +FAL Y
Sbjct: 1113 GGEKSLTALSFIFALQRY 1130
>sp|Q7NG51|SMC_GLOVI Chromosome partition protein Smc OS=Gloeobacter violaceus (strain PCC
7421) GN=smc PE=3 SV=1
Length = 1165
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 72 AVRPTPELPVRDY---AKRSKEMQAVLATL----NTYCTGYEQCLSKRQKEFDTNFVKIG 124
A+ P L + +Y A+R E+ LATL + E C + ++ F F +
Sbjct: 965 ALEPVNMLAIEEYDRTAERQGELSEKLATLQRERSELLLRIEDCDTLKRSAFMQAFDAVN 1024
Query: 125 KRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLAL 184
Q + L+ G L ++ +P+A G+ V P K + ++ +SGGEK+L +L+
Sbjct: 1025 THFQSLFAELS-DGDGHLALEDPDNPFAGGLTLVAHPRGKQVRRLEAMSGGEKSLTALSF 1083
Query: 185 VFALHYY 191
+FAL Y
Sbjct: 1084 IFALQRY 1090
>sp|Q604U6|SMC_METCA Chromosome partition protein Smc OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=smc PE=3 SV=2
Length = 1169
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKE----FDTNFVKIGKRVQECYQMLTFG 137
R ++ +++ LATL EQ + K +E F F KI Q + L G
Sbjct: 985 RYLEEQDRDLTESLATL-------EQAIEKIDRECRARFKETFEKINAGFQRMFPKLFGG 1037
Query: 138 GKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
GKA LE E ++ + G+ + +PP K SI LSGGEK L + ALVFA+
Sbjct: 1038 GKAALELTE-NNLLSAGVSVMAQPPGKRNSSIHLLSGGEKALTAAALVFAI 1087
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSID 170
+++ F F I + E + L+ GG A L + DP++ G++ +P K K I+
Sbjct: 1008 EKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIE 1067
Query: 171 CLSGGEKTLASLALVFALHYY 191
+SGGEK L +LA VFA+ +
Sbjct: 1068 AMSGGEKALTALAFVFAIQKF 1088
>sp|Q5N0D2|SMC_SYNP6 Chromosome partition protein Smc OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=smc PE=3 SV=2
Length = 1195
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 72 AVRPTPELPVRDYAK---RSKEMQAVLATLNTYCTGY----EQCLSKRQKEFDTNFVKIG 124
A+ P L + +Y + R +E+ L T+ T E + R++ F +F I
Sbjct: 999 AMEPVNMLALEEYERTQARLEELSEKLTTIEAERTELLLRIENFTTLRRRAFMESFEAID 1058
Query: 125 KRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLAL 184
+ QE + L+ G L+ DP++ G+ + P K + + +SGGEK+L +L+
Sbjct: 1059 RNFQEIFAHLS-DGDGSLQLDNPEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSF 1117
Query: 185 VFALHYY 191
+FAL Y
Sbjct: 1118 IFALQRY 1124
>sp|Q6N1B7|SMC_RHOPA Chromosome partition protein Smc OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=smc PE=3 SV=2
Length = 1154
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 107 QCLSKRQKE-FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKS 165
Q L+K +E +F + + + L GG+A+L+ E DP G+ + +PP K
Sbjct: 985 QSLNKEARERLLASFDVVNGHFKRLFTTLFGGGEAELKLIESDDPLEAGLDIIAKPPGKK 1044
Query: 166 WKSIDCLSGGEKTLASLALVFAL 188
+S+ LSGGE+ L ++AL+FA+
Sbjct: 1045 PQSLSLLSGGEQALTAMALIFAV 1067
>sp|Q7ZAK1|SMC_THEEB Chromosome partition protein Smc OS=Thermosynechococcus elongatus
(strain BP-1) GN=smc PE=3 SV=1
Length = 1168
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 72 AVRPTPELPVRDYAK---RSKEMQAVLATLNTYCTGY----EQCLSKRQKEFDTNFVKIG 124
A+ P L ++++ + R KE+Q LA L T E + R + F F I
Sbjct: 969 AMEPVNMLAIQEFEETQARLKELQEKLAVLAAERTEILLRIENFTTLRHQSFREAFDAIN 1028
Query: 125 KRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLAL 184
Q + L+ G L+ + DP+A G+ V P K + + +SGGEK+L +L+
Sbjct: 1029 ANFQTIFATLS-DGDGYLQLESPEDPFAGGLNLVAHPKGKPVQRLASMSGGEKSLTALSF 1087
Query: 185 VFALHYY 191
+FAL Y
Sbjct: 1088 IFALQRY 1094
>sp|Q920F6|SMC1B_MOUSE Structural maintenance of chromosomes protein 1B OS=Mus musculus
GN=Smc1b PE=1 SV=1
Length = 1248
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F I + + Y+ L A L + +PY GI Y P
Sbjct: 1054 FEQVKRRRYDAFSQCFEHISVSIDQIYKKLCRNNSAQAFLSPENPEEPYLDGISYNCVAP 1113
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1114 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1142
>sp|P15016|YAT3_RHORU Uncharacterized protein in ATPase CF(0) subunits 3'region
(Fragment) OS=Rhodospirillum rubrum PE=4 SV=1
Length = 173
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 119 NFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKT 178
+F ++ + + L GG+A L E DP G++ + PP K +S+ LSGGE+
Sbjct: 12 SFQRVDGHFRTLFLKLFGGGRAHLTLIESDDPLEAGLEIMASPPGKRLQSLGLLSGGEQA 71
Query: 179 LASLALVFAL 188
L + AL+FA+
Sbjct: 72 LTATALLFAV 81
>sp|B8CW13|SMC_HALOH Chromosome partition protein Smc OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=smc PE=3 SV=1
Length = 1185
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 116 FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGG 175
F F+K+ ++ L GG+A L+ E + G++ V +PP K K + +SGG
Sbjct: 1035 FHEAFLKVNGEFNNTFKELFNGGQASLKLTEPENLLETGVEIVAQPPGKQLKKLSLMSGG 1094
Query: 176 EKTLASLALVFAL 188
E+ L ++ALVFA
Sbjct: 1095 ERALTAIALVFAF 1107
>sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein 1B OS=Homo sapiens
GN=SMC1B PE=1 SV=2
Length = 1235
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F + + + Y+ L A L + +PY +GI Y P
Sbjct: 1055 FEQVKKRRYDLFTQCFEHVSISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNCVAP 1114
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1115 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1143
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 101 YCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVR 160
Y E+ +K+++ F F K+ K +E Y+ + GG L + +P+ GI
Sbjct: 1012 YLQLMEELENKKKEVFMEVFNKVAKNFEEVYKEI--GGIGKLSLENEKNPFEGGILIDAS 1069
Query: 161 PPRKSWKSIDCLSGGEKTLASLALVFALH 189
P K S+D +SGGEK+L +LA +FA+
Sbjct: 1070 PRGKKLLSLDAMSGGEKSLTALAFLFAIQ 1098
>sp|A3PMS2|SMC_RHOS1 Chromosome partition protein Smc OS=Rhodobacter sphaeroides (strain
ATCC 17029 / ATH 2.4.9) GN=smc PE=3 SV=2
Length = 1151
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 118 TNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEK 177
T F ++ + L GG+A L E DP G++ + +PP K ++ LSGGE+
Sbjct: 998 TAFEQVNASFGTLFTHLFGGGEARLVMVESDDPLEAGLEIMCQPPGKKLSTLSLLSGGEQ 1057
Query: 178 TLASLALVFAL 188
TL +LAL+FA+
Sbjct: 1058 TLTALALIFAV 1068
>sp|P47540|SMC_MYCGE Chromosome partition protein Smc OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=smc PE=3 SV=1
Length = 982
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 115 EFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSG 174
EFD K+ + + + ++ L GG + Y + S+ GI PP K+ ++ LSG
Sbjct: 823 EFDQLIQKLNQELPKTFKYLFGGGSCQIRYTDPSNVLVSGIDVFANPPGKNIANLMLLSG 882
Query: 175 GEKTLASLALVFAL 188
GEKTL +L+++F++
Sbjct: 883 GEKTLVALSVLFSI 896
>sp|P75361|SMC_MYCPN Chromosome partition protein Smc OS=Mycoplasma pneumoniae (strain
ATCC 29342 / M129) GN=smc PE=3 SV=1
Length = 982
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 114 KEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLS 173
KEFD K+ + + + L GG + Y + + GI+ PP K+ ++ LS
Sbjct: 822 KEFDELIQKVNAELPKTFNYLFGGGSCQIRYTDTDNVLLSGIEVFANPPGKNVANLMLLS 881
Query: 174 GGEKTLASLALVFAL 188
GGEKTL +L+++F++
Sbjct: 882 GGEKTLVALSVLFSI 896
>sp|P41508|SMC_MYCHR Chromosome partition protein Smc OS=Mycoplasma hyorhinis GN=smc
PE=1 SV=2
Length = 979
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 86 KRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQE----CYQMLTFGGKAD 141
+R +E + + L T + E+ +S K +I V +Q + GGKA+
Sbjct: 788 QRYQEKKQYIEELTTAKSKIEEAISDLDKIIINKTTEIVNLVNNEFNMVFQKMFGGGKAE 847
Query: 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
+ + + +D G++ +PP K+ K++ SGGEK + +++L+FA+
Sbjct: 848 IHFTDKNDILNSGVEISAQPPGKTIKNLRLFSGGEKAIIAISLLFAI 894
>sp|Q24U48|SMC_DESHY Chromosome partition protein Smc OS=Desulfitobacterium hafniense
(strain Y51) GN=smc PE=3 SV=1
Length = 1198
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 59 KWRSPVSGSDVTAAVRPTPELPVR-DY-AKRSKEMQAVLATLNTYCTGYEQCLSKRQKEF 116
K R + G AA+ P+L R D+ + + ++++ +L ++ +S+R F
Sbjct: 987 KLRMELLGPVNQAAIEEYPKLQERYDFLSVQKQDLEEANESLQQLIAELDKTMSER---F 1043
Query: 117 DTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGE 176
+ F+ + + + ++ L GG A+L + ++ G++ + +PP K + + LSGGE
Sbjct: 1044 EEGFIAVNEAFKVVFKELFNGGYAELRLVDPTNLLDTGVEIIAQPPGKKPQLLSLLSGGE 1103
Query: 177 KTLASLALVFAL 188
+ L ++ L+FAL
Sbjct: 1104 RALTAIGLLFAL 1115
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA 493
/ Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 116 FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGG 175
F + ++ ++ Q + + GG+A LE + +D G+ +PP K +I LSGG
Sbjct: 1016 FQETYDQVNQQFQSLFPRIFGGGRATLEMTD-TDLLTAGVIVRAQPPGKRNVTIHMLSGG 1074
Query: 176 EKTLASLALVFAL 188
EK L ++ALVF+L
Sbjct: 1075 EKALTAVALVFSL 1087
>sp|Q7UQV4|SMC_RHOBA Chromosome partition protein Smc OS=Rhodopirellula baltica (strain
SH1) GN=smc PE=3 SV=2
Length = 1192
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 128 QECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFA 187
Q+ Y+ GG ADL +E DP G++ V PP K S LSGGEK L ++AL+ +
Sbjct: 1047 QKLYRKSFGGGHADLILEESDDPLEAGVEIVATPPGKPSFSNSLLSGGEKALTAVALLMS 1106
Query: 188 LHYY 191
+ Y
Sbjct: 1107 IFQY 1110
>sp|Q88WJ9|SMC_LACPL Chromosome partition protein Smc OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=smc PE=3 SV=1
Length = 1185
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 116 FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGG 175
F T F ++ ++ + GGKA+L + G+ + +PP K ++ + LSGG
Sbjct: 1032 FKTAFDQVASEFSTIFEQMFGGGKAELILTDPEHLLTSGVDIMAQPPGKKFQRLSLLSGG 1091
Query: 176 EKTLASLALVFAL 188
E+ L ++ L+FA+
Sbjct: 1092 ERALTAITLLFAI 1104
>sp|Q10970|SMC_MYCTU Chromosome partition protein Smc OS=Mycobacterium tuberculosis GN=smc
PE=3 SV=2
Length = 1205
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 116 FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGG 175
F+ FV + + + + L GG+ L E D GI+ RPP K + LSGG
Sbjct: 1047 FNDAFVDVEREFRGVFTALFPGGEGRLRLTEPDDMLTTGIEVEARPPGKKITRLSLLSGG 1106
Query: 176 EKTLASLALVFAL 188
EK L ++A++ A+
Sbjct: 1107 EKALTAVAMLVAI 1119
>sp|E1X022|SMC_BACMS Chromosome partition protein Smc OS=Bacteriovorax marinus (strain
ATCC BAA-682 / DSM 15412 / SJ) GN=smc PE=3 SV=2
Length = 1226
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 46/78 (58%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSID 170
K ++ F F ++ R ++ + ++ GG+A L+ + G+ + +PP K ++I+
Sbjct: 1075 KSKERFKIAFEEVDVRFRKVFPIIFGGGEAMLKVTGDINDSECGVDIIAKPPGKKMQNIN 1134
Query: 171 CLSGGEKTLASLALVFAL 188
+SGGEK + +++L+F++
Sbjct: 1135 LMSGGEKAMTAVSLIFSI 1152
>sp|Q1INB1|SMC_KORVE Chromosome partition protein Smc OS=Koribacter versatilis (strain
Ellin345) GN=smc PE=3 SV=1
Length = 1308
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 115 EFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSG 174
+FD F I + + ++ L GG+ ++ + + GI + PP K +++ LSG
Sbjct: 1153 KFDEAFAAINENFGKAFKKLFGGGQGFMKLTDELNSSDSGIDVIASPPGKKLQNVLLLSG 1212
Query: 175 GEKTLASLALVFALHYY 191
GEKTL + +L+ + Y
Sbjct: 1213 GEKTLTAFSLLVGIFQY 1229
>sp|Q73VM3|SMC_MYCPA Chromosome partition protein Smc OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=smc PE=3 SV=2
Length = 1196
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 116 FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGG 175
F + + + + + +L GG+ L + S+ GI+ RPP K + LSGG
Sbjct: 1040 FSEAYTDVEREFSDVFGVLFPGGEGRLRLTDPSNMLTTGIEVEARPPGKKITRLSLLSGG 1099
Query: 176 EKTLASLALVFAL 188
EK L ++A++ A+
Sbjct: 1100 EKALTAVAMLVAI 1112
>sp|C4ZJU1|SMC_THASP Chromosome partition protein Smc OS=Thauera sp. (strain MZ1T) GN=smc
PE=3 SV=2
Length = 1208
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 90 EMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEY--KEY 147
+ + +L ++T + + +++ + + ++ + L GG+A+L +E
Sbjct: 1026 QTEDLLQAIDTLEDAIRRIDRETREQLQDTYNTVNRQFGALFPQLFGGGRAELVLTGEEI 1085
Query: 148 SDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
D GI+ V +PP K SI LSGGEK L ++ALVF++
Sbjct: 1086 LDA---GIQIVAQPPGKKNASIHLLSGGEKALTAIALVFSM 1123
>sp|A9BZW2|SMC_DELAS Chromosome partition protein Smc OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=smc PE=3 SV=2
Length = 1175
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 154 GIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
G++ + +PP K ++I LSGGEK L ++ALVFA+
Sbjct: 1058 GVQVIAQPPGKKNQTIHLLSGGEKALTAIALVFAI 1092
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,533,381
Number of Sequences: 539616
Number of extensions: 2988100
Number of successful extensions: 7619
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7547
Number of HSP's gapped (non-prelim): 69
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)