Query psy12760
Match_columns 199
No_of_seqs 151 out of 1237
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:57:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 100.0 3.7E-28 8.1E-33 246.2 15.6 136 59-194 946-1089(1163)
2 KOG0996|consensus 99.9 2.7E-22 6E-27 199.2 14.2 122 73-194 1090-1218(1293)
3 KOG0018|consensus 99.9 2E-22 4.3E-27 199.0 12.3 124 70-194 945-1074(1141)
4 TIGR02169 SMC_prok_A chromosom 99.9 9.4E-21 2E-25 188.3 16.1 135 58-193 954-1096(1164)
5 KOG0964|consensus 99.8 9E-19 2E-23 172.1 11.5 125 70-194 965-1120(1200)
6 KOG0933|consensus 99.7 7.7E-18 1.7E-22 166.0 9.3 113 81-194 993-1105(1174)
7 TIGR02168 SMC_prok_B chromosom 99.7 1.7E-16 3.7E-21 157.2 15.5 125 69-193 980-1111(1179)
8 KOG0979|consensus 99.7 1.7E-15 3.6E-20 149.8 14.5 165 14-193 792-983 (1072)
9 KOG0250|consensus 98.5 5.4E-07 1.2E-11 91.0 11.1 78 111-192 927-1010(1074)
10 TIGR03185 DNA_S_dndD DNA sulfu 98.1 7.6E-05 1.6E-09 72.6 14.0 69 118-192 502-572 (650)
11 PRK03918 chromosome segregatio 98.1 0.0001 2.2E-09 73.1 15.0 70 117-191 739-808 (880)
12 PRK02224 chromosome segregatio 98.0 0.00011 2.4E-09 73.1 14.3 66 119-191 735-801 (880)
13 COG0419 SbcC ATPase involved i 97.8 0.00016 3.5E-09 72.8 11.1 77 112-191 758-835 (908)
14 PRK10869 recombination and rep 97.8 0.00048 1E-08 66.2 13.4 72 119-190 371-449 (553)
15 TIGR00634 recN DNA repair prot 97.6 0.0015 3.3E-08 62.6 13.7 37 154-190 421-459 (563)
16 PF02463 SMC_N: RecF/RecN/SMC 97.1 0.00031 6.6E-09 58.4 2.1 24 171-194 136-159 (220)
17 PHA02562 46 endonuclease subun 97.0 0.0061 1.3E-07 57.5 10.8 63 117-188 423-485 (562)
18 PF13166 AAA_13: AAA domain 96.2 0.092 2E-06 51.2 13.1 35 153-190 485-519 (712)
19 PRK01156 chromosome segregatio 96.1 0.025 5.5E-07 56.7 8.9 29 163-191 793-821 (895)
20 PF13514 AAA_27: AAA domain 96.0 0.093 2E-06 54.3 12.6 70 119-192 977-1046(1111)
21 PF13558 SbcCD_C: Putative exo 95.0 0.035 7.5E-07 40.9 4.0 26 166-191 27-53 (90)
22 COG0497 RecN ATPase involved i 95.0 0.66 1.4E-05 45.2 13.5 38 154-191 412-451 (557)
23 PRK04778 septation ring format 94.7 0.068 1.5E-06 51.6 6.0 94 35-131 430-527 (569)
24 PRK00064 recF recombination pr 93.8 2.3 4.9E-05 38.8 13.8 70 117-190 192-292 (361)
25 COG4694 Uncharacterized protei 93.5 0.99 2.2E-05 44.3 11.2 24 170-193 528-551 (758)
26 TIGR00618 sbcc exonuclease Sbc 92.0 0.94 2E-05 46.7 9.5 27 163-189 942-968 (1042)
27 TIGR00611 recf recF protein. A 92.0 5.1 0.00011 36.7 13.4 70 118-191 199-295 (365)
28 PRK14079 recF recombination pr 91.9 4.4 9.6E-05 36.8 12.7 67 117-187 189-279 (349)
29 PRK10246 exonuclease subunit S 91.7 1.8 3.9E-05 44.9 11.2 35 154-188 930-966 (1047)
30 COG1122 CbiO ABC-type cobalt t 91.4 0.058 1.3E-06 46.7 0.0 23 167-189 134-156 (235)
31 COG1136 SalX ABC-type antimicr 89.8 0.17 3.7E-06 43.9 1.5 21 167-187 138-158 (226)
32 COG1120 FepC ABC-type cobalami 89.6 0.22 4.9E-06 44.0 2.2 21 167-187 134-154 (258)
33 TIGR00606 rad50 rad50. This fa 89.6 2 4.2E-05 45.6 9.4 70 120-190 1139-1218(1311)
34 TIGR02168 SMC_prok_B chromosom 89.2 1.8 3.8E-05 43.8 8.4 53 80-132 998-1050(1179)
35 cd03275 ABC_SMC1_euk Eukaryoti 87.3 0.29 6.3E-06 41.8 1.3 32 159-190 143-174 (247)
36 cd03239 ABC_SMC_head The struc 85.7 1.4 3.1E-05 36.0 4.6 30 157-189 83-112 (178)
37 COG4717 Uncharacterized conser 85.7 16 0.00034 37.8 12.5 62 125-192 861-922 (984)
38 COG3840 ThiQ ABC-type thiamine 84.9 0.46 1E-05 41.0 1.3 18 168-185 126-143 (231)
39 COG2884 FtsE Predicted ATPase 84.7 0.5 1.1E-05 40.8 1.4 18 167-184 133-150 (223)
40 COG4604 CeuD ABC-type enteroch 84.3 0.24 5.2E-06 43.2 -0.6 21 167-187 131-151 (252)
41 COG1126 GlnQ ABC-type polar am 83.9 0.43 9.4E-06 41.7 0.7 23 167-189 132-154 (240)
42 PF00005 ABC_tran: ABC transpo 83.8 0.88 1.9E-05 34.4 2.3 20 168-187 105-124 (137)
43 COG1135 AbcC ABC-type metal io 83.2 0.73 1.6E-05 42.2 1.9 26 163-188 133-158 (339)
44 COG1124 DppF ABC-type dipeptid 83.2 0.65 1.4E-05 41.0 1.5 20 168-187 138-157 (252)
45 COG0488 Uup ATPase components 82.9 0.57 1.2E-05 45.3 1.2 21 167-187 435-455 (530)
46 COG1121 ZnuC ABC-type Mn/Zn tr 82.1 0.9 2E-05 40.1 2.0 21 167-187 135-155 (254)
47 cd03235 ABC_Metallic_Cations A 82.1 1 2.2E-05 37.1 2.2 21 168-188 129-149 (213)
48 COG1101 PhnK ABC-type uncharac 81.5 0.82 1.8E-05 40.3 1.5 21 167-189 144-164 (263)
49 TIGR00960 3a0501s02 Type II (G 81.3 0.99 2.1E-05 37.3 1.9 20 169-188 136-155 (216)
50 COG1116 TauB ABC-type nitrate/ 81.0 0.83 1.8E-05 40.3 1.4 19 169-187 128-146 (248)
51 cd03261 ABC_Org_Solvent_Resist 80.9 0.99 2.1E-05 37.8 1.8 21 168-188 133-153 (235)
52 TIGR02211 LolD_lipo_ex lipopro 80.4 1.1 2.4E-05 37.0 1.9 20 169-188 139-158 (221)
53 cd03225 ABC_cobalt_CbiO_domain 80.4 1.2 2.7E-05 36.5 2.2 20 169-188 132-151 (211)
54 PRK04863 mukB cell division pr 80.2 3.1 6.7E-05 45.0 5.5 24 168-191 1362-1385(1486)
55 cd03259 ABC_Carb_Solutes_like 80.1 1.1 2.4E-05 36.9 1.8 20 169-188 128-147 (213)
56 COG4619 ABC-type uncharacteriz 80.0 0.96 2.1E-05 38.7 1.4 17 167-183 129-145 (223)
57 KOG0062|consensus 80.0 0.89 1.9E-05 44.2 1.4 20 166-185 477-496 (582)
58 cd03293 ABC_NrtD_SsuB_transpor 79.7 1.3 2.8E-05 36.7 2.1 19 170-188 130-148 (220)
59 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.5 1.1 2.3E-05 37.0 1.6 20 169-188 138-157 (218)
60 cd03237 ABC_RNaseL_inhibitor_d 79.5 1.2 2.6E-05 38.3 1.9 21 168-188 112-132 (246)
61 cd03278 ABC_SMC_barmotin Barmo 79.4 1.4 3E-05 36.6 2.2 24 166-189 108-131 (197)
62 COG1123 ATPase components of v 79.4 1.2 2.5E-05 43.4 2.0 22 167-188 425-446 (539)
63 cd03242 ABC_RecF RecF is a rec 79.3 7.1 0.00015 33.8 6.7 31 154-188 170-200 (270)
64 cd03256 ABC_PhnC_transporter A 79.2 1.4 3E-05 36.9 2.1 21 168-188 141-161 (241)
65 TIGR02673 FtsE cell division A 79.0 1.3 2.8E-05 36.4 1.9 20 169-188 135-154 (214)
66 cd03268 ABC_BcrA_bacitracin_re 78.8 1.2 2.5E-05 36.6 1.5 21 168-188 123-143 (208)
67 COG3839 MalK ABC-type sugar tr 78.3 1.2 2.5E-05 40.9 1.6 16 169-184 131-146 (338)
68 cd03269 ABC_putative_ATPase Th 78.1 1.3 2.9E-05 36.3 1.7 21 168-188 125-145 (210)
69 cd03276 ABC_SMC6_euk Eukaryoti 78.1 1.9 4.2E-05 35.8 2.7 26 165-190 103-128 (198)
70 TIGR01184 ntrCD nitrate transp 78.0 1.4 3.1E-05 37.0 1.9 20 169-188 112-131 (230)
71 cd03226 ABC_cobalt_CbiO_domain 77.9 1.6 3.4E-05 35.8 2.1 21 168-188 123-143 (205)
72 PRK13643 cbiO cobalt transport 77.6 1.6 3.5E-05 38.1 2.2 21 168-188 141-161 (288)
73 cd03219 ABC_Mj1267_LivG_branch 77.6 1.5 3.2E-05 36.7 1.8 21 168-188 140-160 (236)
74 cd03265 ABC_DrrA DrrA is the A 77.5 1.5 3.2E-05 36.3 1.9 20 169-188 129-148 (220)
75 PRK10982 galactose/methyl gala 77.3 1.6 3.5E-05 40.9 2.2 23 166-188 386-408 (491)
76 PRK13409 putative ATPase RIL; 77.3 1.5 3.3E-05 42.6 2.1 22 167-188 449-470 (590)
77 KOG0058|consensus 77.1 1.4 2.9E-05 44.2 1.7 14 170-183 603-616 (716)
78 TIGR01166 cbiO cobalt transpor 77.0 1.7 3.6E-05 35.2 2.0 20 169-188 125-144 (190)
79 TIGR02315 ABC_phnC phosphonate 76.9 1.7 3.7E-05 36.4 2.1 21 168-188 142-162 (243)
80 cd03245 ABCC_bacteriocin_expor 76.9 1.8 4E-05 35.7 2.2 21 168-188 137-157 (220)
81 TIGR00972 3a0107s01c2 phosphat 76.7 1.8 3.9E-05 36.6 2.1 21 168-188 141-161 (247)
82 cd03292 ABC_FtsE_transporter F 76.5 1.7 3.7E-05 35.6 1.9 20 169-188 134-153 (214)
83 TIGR02770 nickel_nikD nickel i 76.5 1.8 3.8E-05 36.3 2.0 21 168-188 122-142 (230)
84 cd03260 ABC_PstB_phosphate_tra 76.5 1.8 3.8E-05 36.0 2.0 20 169-188 139-158 (227)
85 COG1118 CysA ABC-type sulfate/ 76.4 1.4 3.1E-05 40.4 1.6 21 169-189 135-155 (345)
86 PRK13649 cbiO cobalt transport 76.3 1.8 4E-05 37.4 2.1 21 168-188 142-162 (280)
87 PRK11629 lolD lipoprotein tran 76.3 1.7 3.7E-05 36.4 1.9 20 169-188 143-162 (233)
88 cd03252 ABCC_Hemolysin The ABC 76.3 1.9 4.1E-05 36.1 2.2 21 168-188 135-155 (237)
89 PRK11247 ssuB aliphatic sulfon 76.2 1.7 3.8E-05 37.5 2.0 21 168-188 130-150 (257)
90 PRK13548 hmuV hemin importer A 76.1 1.9 4.1E-05 37.0 2.1 21 168-188 131-151 (258)
91 COG3842 PotA ABC-type spermidi 76.1 1.1 2.4E-05 41.3 0.8 20 168-187 133-152 (352)
92 PRK10938 putative molybdenum t 76.0 1.8 3.9E-05 40.4 2.2 22 167-188 131-152 (490)
93 cd03218 ABC_YhbG The ABC trans 75.9 1.8 3.9E-05 36.0 1.9 21 168-188 130-150 (232)
94 PRK14247 phosphate ABC transpo 75.9 1.9 4.1E-05 36.5 2.1 21 168-188 143-163 (250)
95 PRK11831 putative ABC transpor 75.8 1.8 3.9E-05 37.3 2.0 21 168-188 140-160 (269)
96 TIGR02323 CP_lyasePhnK phospho 75.7 1.9 4E-05 36.6 2.0 21 168-188 145-165 (253)
97 TIGR03269 met_CoM_red_A2 methy 75.7 1.9 4E-05 40.7 2.2 21 168-188 165-185 (520)
98 PRK13638 cbiO cobalt transport 75.5 2 4.3E-05 37.0 2.1 21 168-188 133-153 (271)
99 PRK13538 cytochrome c biogenes 75.4 1.8 3.9E-05 35.6 1.8 21 168-188 126-146 (204)
100 cd03264 ABC_drug_resistance_li 75.3 1.9 4.1E-05 35.4 1.9 21 168-188 127-147 (211)
101 PRK14250 phosphate ABC transpo 75.3 2.1 4.6E-05 36.2 2.2 21 168-188 128-148 (241)
102 COG4608 AppF ABC-type oligopep 75.3 1.8 4E-05 38.5 1.9 23 167-189 105-127 (268)
103 cd03301 ABC_MalK_N The N-termi 75.2 2 4.4E-05 35.2 2.0 20 169-188 128-147 (213)
104 cd03263 ABC_subfamily_A The AB 75.2 1.8 3.9E-05 35.7 1.8 20 169-188 131-150 (220)
105 cd03298 ABC_ThiQ_thiamine_tran 75.1 2.1 4.5E-05 35.2 2.1 19 170-188 127-145 (211)
106 cd03277 ABC_SMC5_euk Eukaryoti 75.1 2.3 4.9E-05 35.9 2.3 23 168-190 123-145 (213)
107 PRK11264 putative amino-acid A 75.1 2 4.4E-05 36.2 2.1 21 168-188 141-161 (250)
108 cd03266 ABC_NatA_sodium_export 75.1 1.7 3.8E-05 35.8 1.6 21 168-188 133-153 (218)
109 TIGR02633 xylG D-xylose ABC tr 75.0 1.9 4.2E-05 40.4 2.1 22 167-188 399-420 (500)
110 PRK10584 putative ABC transpor 74.9 2 4.3E-05 35.7 1.9 20 169-188 144-163 (228)
111 PRK11000 maltose/maltodextrin 74.9 1.9 4.1E-05 39.4 2.0 21 168-188 130-150 (369)
112 PRK09700 D-allose transporter 74.7 2 4.3E-05 40.5 2.1 23 166-188 404-426 (510)
113 COG0410 LivF ABC-type branched 74.7 1.7 3.7E-05 38.1 1.5 20 167-186 132-151 (237)
114 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 74.7 2 4.3E-05 36.0 1.9 21 168-188 139-159 (224)
115 TIGR03864 PQQ_ABC_ATP ABC tran 74.7 2 4.3E-05 36.1 1.9 21 168-188 129-149 (236)
116 cd03257 ABC_NikE_OppD_transpor 74.6 2.1 4.6E-05 35.4 2.0 21 168-188 142-162 (228)
117 PRK13651 cobalt transporter AT 74.6 2.1 4.6E-05 38.0 2.1 22 168-189 162-183 (305)
118 PRK15134 microcin C ABC transp 74.5 2 4.3E-05 40.7 2.1 22 167-188 152-173 (529)
119 PRK14242 phosphate transporter 74.4 2.3 4.9E-05 36.0 2.2 21 168-188 146-166 (253)
120 PRK10636 putative ABC transpor 74.3 1.8 4E-05 42.3 1.8 21 168-188 427-447 (638)
121 TIGR01187 potA spermidine/putr 74.3 2 4.4E-05 38.4 2.0 20 169-188 98-117 (325)
122 PRK13549 xylose transporter AT 74.3 2 4.4E-05 40.4 2.0 22 167-188 401-422 (506)
123 TIGR03258 PhnT 2-aminoethylpho 74.0 2.1 4.5E-05 39.2 2.0 21 168-188 134-154 (362)
124 PRK15079 oligopeptide ABC tran 74.0 2.1 4.5E-05 38.6 2.0 20 169-188 159-178 (331)
125 cd03297 ABC_ModC_molybdenum_tr 74.0 2.3 5E-05 35.1 2.1 21 168-188 128-148 (214)
126 COG4181 Predicted ABC-type tra 73.8 2 4.4E-05 36.9 1.7 20 168-187 143-162 (228)
127 cd03214 ABC_Iron-Siderophores_ 73.7 2.5 5.4E-05 34.1 2.2 21 168-188 94-114 (180)
128 cd03254 ABCC_Glucan_exporter_l 73.6 2.4 5.2E-05 35.2 2.1 21 168-188 136-156 (229)
129 TIGR01288 nodI ATP-binding ABC 73.6 2.1 4.6E-05 37.7 1.8 21 168-188 132-152 (303)
130 PRK14272 phosphate ABC transpo 73.6 2.4 5.1E-05 35.8 2.1 21 168-188 145-165 (252)
131 PRK15134 microcin C ABC transp 73.6 2.2 4.9E-05 40.3 2.2 22 167-188 421-442 (529)
132 PRK10908 cell division protein 73.5 2.4 5.1E-05 35.2 2.0 20 169-188 135-154 (222)
133 COG4559 ABC-type hemin transpo 73.5 2.3 5.1E-05 37.4 2.1 21 167-187 131-151 (259)
134 cd03224 ABC_TM1139_LivF_branch 73.5 2.2 4.7E-05 35.2 1.8 21 168-188 129-149 (222)
135 PRK11614 livF leucine/isoleuci 73.4 2.2 4.8E-05 35.7 1.9 21 168-188 134-154 (237)
136 cd03262 ABC_HisP_GlnQ_permease 73.4 2.4 5.1E-05 34.7 2.0 20 169-188 133-152 (213)
137 PRK13631 cbiO cobalt transport 73.3 2.4 5.2E-05 37.9 2.2 21 168-188 173-193 (320)
138 TIGR03410 urea_trans_UrtE urea 73.3 2.3 4.9E-05 35.4 1.9 21 168-188 128-148 (230)
139 PRK15439 autoinducer 2 ABC tra 73.3 2.4 5.2E-05 40.1 2.3 23 166-188 398-420 (510)
140 PRK13641 cbiO cobalt transport 73.2 2.5 5.5E-05 36.9 2.2 21 168-188 142-162 (287)
141 TIGR01189 ccmA heme ABC export 73.2 2.2 4.9E-05 34.8 1.8 21 168-188 124-144 (198)
142 PRK13543 cytochrome c biogenes 73.1 2.3 5E-05 35.2 1.9 21 168-188 134-154 (214)
143 cd03296 ABC_CysA_sulfate_impor 73.0 2.3 5E-05 35.7 1.9 20 169-188 134-153 (239)
144 cd03240 ABC_Rad50 The catalyti 73.0 3.3 7.2E-05 34.4 2.8 23 168-190 112-134 (204)
145 PRK11701 phnK phosphonate C-P 73.0 2.6 5.7E-05 35.9 2.2 21 168-188 148-168 (258)
146 PRK11124 artP arginine transpo 72.9 2.4 5.1E-05 35.7 1.9 20 169-188 139-158 (242)
147 PRK11288 araG L-arabinose tran 72.9 2.2 4.8E-05 40.1 1.9 23 166-188 391-413 (501)
148 cd03294 ABC_Pro_Gly_Bertaine T 72.9 2.5 5.5E-05 36.5 2.2 20 169-188 158-177 (269)
149 cd03231 ABC_CcmA_heme_exporter 72.9 2.3 5.1E-05 34.9 1.9 21 168-188 122-142 (201)
150 TIGR02314 ABC_MetN D-methionin 72.9 2.2 4.8E-05 38.8 1.9 21 168-188 137-157 (343)
151 PRK14273 phosphate ABC transpo 72.8 2.6 5.7E-05 35.7 2.2 21 168-188 147-167 (254)
152 TIGR01277 thiQ thiamine ABC tr 72.7 2.6 5.6E-05 34.8 2.1 19 170-188 127-145 (213)
153 PRK11022 dppD dipeptide transp 72.6 2.5 5.4E-05 37.9 2.1 21 168-188 150-170 (326)
154 PRK14249 phosphate ABC transpo 72.6 2.6 5.7E-05 35.7 2.2 22 167-188 143-164 (251)
155 PRK11308 dppF dipeptide transp 72.6 2.6 5.7E-05 37.8 2.2 20 169-188 152-171 (327)
156 cd03248 ABCC_TAP TAP, the Tran 72.6 2.6 5.7E-05 34.9 2.1 20 169-188 148-167 (226)
157 PRK11650 ugpC glycerol-3-phosp 72.6 2.2 4.8E-05 38.8 1.8 20 169-188 132-151 (356)
158 cd03258 ABC_MetN_methionine_tr 72.5 2.4 5.3E-05 35.3 1.9 21 168-188 137-157 (233)
159 PRK14245 phosphate ABC transpo 72.5 2.6 5.7E-05 35.7 2.1 21 168-188 143-163 (250)
160 cd03249 ABC_MTABC3_MDL1_MDL2 M 72.4 2.6 5.6E-05 35.3 2.1 21 168-188 136-156 (238)
161 PRK10771 thiQ thiamine transpo 72.4 2.7 5.8E-05 35.2 2.1 19 170-188 128-146 (232)
162 TIGR01188 drrA daunorubicin re 72.4 2.4 5.2E-05 37.3 1.9 21 168-188 121-141 (302)
163 PRK13637 cbiO cobalt transport 72.4 2.6 5.7E-05 36.8 2.2 21 168-188 141-161 (287)
164 PRK11248 tauB taurine transpor 72.4 2.4 5.2E-05 36.4 1.9 20 169-188 126-145 (255)
165 PRK15112 antimicrobial peptide 72.2 2.5 5.5E-05 36.3 2.0 20 169-188 147-166 (267)
166 PRK11432 fbpC ferric transport 72.2 2.5 5.4E-05 38.5 2.0 20 169-188 134-153 (351)
167 PRK13646 cbiO cobalt transport 72.2 2.7 5.8E-05 36.7 2.2 22 168-189 142-163 (286)
168 PRK11153 metN DL-methionine tr 72.2 2.4 5.3E-05 38.2 1.9 21 168-188 137-157 (343)
169 PRK11144 modC molybdate transp 72.0 2.6 5.7E-05 38.1 2.1 20 169-188 126-145 (352)
170 PRK14258 phosphate ABC transpo 72.0 2.8 6E-05 35.9 2.2 21 168-188 147-167 (261)
171 PRK14268 phosphate ABC transpo 72.0 2.6 5.7E-05 36.0 2.0 21 168-188 151-171 (258)
172 TIGR03608 L_ocin_972_ABC putat 72.0 2.7 5.8E-05 34.2 2.0 20 169-188 132-151 (206)
173 PRK14254 phosphate ABC transpo 72.0 2.7 5.9E-05 36.7 2.2 21 168-188 177-197 (285)
174 PRK14241 phosphate transporter 71.9 2.7 5.9E-05 35.8 2.1 22 167-188 144-165 (258)
175 PRK13645 cbiO cobalt transport 71.8 2.7 5.8E-05 36.6 2.1 21 168-188 147-167 (289)
176 PRK14239 phosphate transporter 71.7 2.9 6.3E-05 35.3 2.2 21 168-188 145-165 (252)
177 COG4148 ModC ABC-type molybdat 71.7 2 4.4E-05 39.3 1.3 14 170-183 127-140 (352)
178 PRK14274 phosphate ABC transpo 71.6 2.8 6.1E-05 35.7 2.2 21 168-188 152-172 (259)
179 TIGR02142 modC_ABC molybdenum 71.6 2.6 5.7E-05 38.1 2.0 20 169-188 129-148 (354)
180 PRK13634 cbiO cobalt transport 71.6 2.8 6.1E-05 36.7 2.2 21 168-188 142-162 (290)
181 cd03295 ABC_OpuCA_Osmoprotecti 71.5 2.5 5.4E-05 35.6 1.8 21 168-188 132-152 (242)
182 PRK10762 D-ribose transporter 71.5 2.5 5.4E-05 39.8 1.9 22 167-188 391-412 (501)
183 PRK14255 phosphate ABC transpo 71.4 2.9 6.4E-05 35.3 2.2 21 168-188 145-165 (252)
184 PRK11300 livG leucine/isoleuci 71.4 2.7 5.9E-05 35.5 2.0 21 168-188 150-170 (255)
185 PRK14270 phosphate ABC transpo 71.3 3 6.4E-05 35.3 2.2 21 168-188 144-164 (251)
186 PRK09452 potA putrescine/sperm 71.3 2.5 5.4E-05 38.9 1.9 20 169-188 142-161 (375)
187 PRK14267 phosphate ABC transpo 71.2 2.7 5.8E-05 35.6 1.9 21 168-188 146-166 (253)
188 PRK10261 glutathione transport 71.2 2.7 5.8E-05 40.9 2.1 22 167-188 459-480 (623)
189 cd03234 ABCG_White The White s 71.1 3.1 6.7E-05 34.7 2.2 21 168-188 140-160 (226)
190 TIGR03265 PhnT2 putative 2-ami 71.0 2.6 5.7E-05 38.3 1.9 21 168-188 131-151 (353)
191 COG3638 ABC-type phosphate/pho 70.9 2.1 4.6E-05 37.9 1.2 25 163-187 139-163 (258)
192 PRK14262 phosphate ABC transpo 70.9 2.8 6.1E-05 35.4 2.0 21 168-188 143-163 (250)
193 TIGR03411 urea_trans_UrtD urea 70.8 2.8 6E-05 35.2 1.9 21 168-188 140-160 (242)
194 PRK14235 phosphate transporter 70.8 3.1 6.7E-05 35.8 2.2 21 168-188 160-180 (267)
195 PRK10744 pstB phosphate transp 70.7 3.2 6.9E-05 35.5 2.3 21 168-188 153-173 (260)
196 PRK09700 D-allose transporter 70.6 2.6 5.7E-05 39.6 1.9 21 168-188 142-162 (510)
197 PRK11147 ABC transporter ATPas 70.5 2.5 5.5E-05 41.2 1.8 21 168-188 437-457 (635)
198 PRK10895 lipopolysaccharide AB 70.5 2.9 6.2E-05 35.1 1.9 21 168-188 134-154 (241)
199 TIGR02324 CP_lyasePhnL phospho 70.5 3.1 6.8E-05 34.4 2.1 21 168-188 146-166 (224)
200 PRK11607 potG putrescine trans 70.5 2.8 6E-05 38.6 1.9 21 168-188 146-166 (377)
201 TIGR03269 met_CoM_red_A2 methy 70.3 2.7 5.8E-05 39.7 1.9 22 167-188 423-444 (520)
202 TIGR02203 MsbA_lipidA lipid A 70.3 3.6 7.7E-05 39.0 2.7 27 154-186 458-484 (571)
203 cd03272 ABC_SMC3_euk Eukaryoti 70.3 2.9 6.4E-05 35.0 1.9 23 167-189 154-176 (243)
204 PRK09473 oppD oligopeptide tra 70.2 2.9 6.3E-05 37.6 2.0 21 168-188 158-178 (330)
205 PRK15064 ABC transporter ATP-b 70.1 2.9 6.3E-05 39.6 2.0 21 168-188 435-455 (530)
206 PRK10982 galactose/methyl gala 70.1 2.8 6E-05 39.3 1.9 21 168-188 131-151 (491)
207 PRK13547 hmuV hemin importer A 70.1 3.1 6.8E-05 36.2 2.1 21 168-188 142-162 (272)
208 PRK09493 glnQ glutamine ABC tr 70.0 3 6.5E-05 35.0 2.0 20 169-188 134-153 (240)
209 PRK13549 xylose transporter AT 69.9 2.7 5.9E-05 39.6 1.8 21 168-188 140-160 (506)
210 PRK15093 antimicrobial peptide 69.8 3.1 6.7E-05 37.3 2.1 21 168-188 155-175 (330)
211 COG0444 DppD ABC-type dipeptid 69.8 2.9 6.3E-05 38.1 1.9 21 168-188 150-170 (316)
212 PRK14240 phosphate transporter 69.8 3.4 7.3E-05 34.9 2.2 21 168-188 143-163 (250)
213 PRK11819 putative ABC transpor 69.7 2.8 6.1E-05 40.1 1.9 21 168-188 160-180 (556)
214 cd03253 ABCC_ATM1_transporter 69.7 3.3 7.1E-05 34.5 2.1 20 169-188 135-154 (236)
215 PRK09544 znuC high-affinity zi 69.7 3 6.5E-05 35.8 1.9 21 168-188 117-137 (251)
216 TIGR02769 nickel_nikE nickel i 69.7 3.1 6.8E-05 35.7 2.0 21 168-188 147-167 (265)
217 PRK15439 autoinducer 2 ABC tra 69.6 2.9 6.3E-05 39.5 1.9 21 168-188 137-157 (510)
218 PRK11174 cysteine/glutathione 69.6 2.5 5.3E-05 40.4 1.4 15 170-184 484-498 (588)
219 PRK13541 cytochrome c biogenes 69.6 3.1 6.7E-05 33.9 1.9 21 168-188 120-140 (195)
220 PRK14244 phosphate ABC transpo 69.4 3.1 6.8E-05 35.2 1.9 21 168-188 146-166 (251)
221 PRK03695 vitamin B12-transport 69.4 3.4 7.4E-05 35.2 2.1 21 168-188 123-143 (248)
222 TIGR03005 ectoine_ehuA ectoine 69.4 3.2 6.9E-05 35.2 2.0 20 169-188 144-163 (252)
223 PRK14269 phosphate ABC transpo 69.4 3.5 7.5E-05 34.9 2.2 21 168-188 139-159 (246)
224 TIGR03719 ABC_ABC_ChvD ATP-bin 69.3 2.9 6.3E-05 39.9 1.9 21 168-188 158-178 (552)
225 PRK10419 nikE nickel transport 69.3 3.6 7.9E-05 35.5 2.3 21 168-188 148-168 (268)
226 PRK15056 manganese/iron transp 69.3 3.4 7.4E-05 35.6 2.2 21 168-188 139-159 (272)
227 PRK10575 iron-hydroxamate tran 69.2 3.5 7.5E-05 35.4 2.2 20 169-188 145-164 (265)
228 cd00267 ABC_ATPase ABC (ATP-bi 69.2 3.4 7.3E-05 32.4 2.0 18 172-189 81-98 (157)
229 cd03244 ABCC_MRP_domain2 Domai 69.2 3.5 7.7E-05 34.0 2.2 21 168-188 136-156 (221)
230 COG0488 Uup ATPase components 69.1 2.9 6.2E-05 40.5 1.8 21 166-186 148-168 (530)
231 cd03251 ABCC_MsbA MsbA is an e 69.1 3.5 7.7E-05 34.3 2.2 20 169-188 136-155 (234)
232 TIGR03719 ABC_ABC_ChvD ATP-bin 68.9 3 6.6E-05 39.8 1.9 21 168-188 440-460 (552)
233 PRK14253 phosphate ABC transpo 68.9 3.6 7.9E-05 34.7 2.2 21 168-188 142-162 (249)
234 cd03233 ABC_PDR_domain1 The pl 68.7 3.5 7.6E-05 34.0 2.0 21 168-188 115-135 (202)
235 PRK14248 phosphate ABC transpo 68.7 3.6 7.8E-05 35.3 2.2 21 168-188 161-181 (268)
236 cd03270 ABC_UvrA_I The excisio 68.7 3.7 8.1E-05 34.6 2.2 22 168-189 134-155 (226)
237 TIGR01186 proV glycine betaine 68.6 3.1 6.8E-05 38.2 1.9 21 168-188 126-146 (363)
238 PRK10619 histidine/lysine/argi 68.4 3.6 7.9E-05 35.0 2.1 21 168-188 149-169 (257)
239 cd03267 ABC_NatA_like Similar 68.4 3.2 7E-05 35.0 1.8 20 169-188 151-170 (236)
240 TIGR02633 xylG D-xylose ABC tr 68.3 3.1 6.8E-05 39.0 1.8 21 168-188 138-158 (500)
241 PRK11231 fecE iron-dicitrate t 68.2 3.8 8.2E-05 34.8 2.2 21 168-188 135-155 (255)
242 PRK11147 ABC transporter ATPas 68.1 3.2 7E-05 40.5 2.0 22 167-188 152-173 (635)
243 TIGR01978 sufC FeS assembly AT 68.1 3.5 7.6E-05 34.4 2.0 18 171-188 144-161 (243)
244 PRK10762 D-ribose transporter 67.9 3.1 6.8E-05 39.1 1.8 21 168-188 138-158 (501)
245 PRK13540 cytochrome c biogenes 67.9 3.7 7.9E-05 33.6 2.0 20 169-188 125-144 (200)
246 PRK10938 putative molybdenum t 67.8 3.2 7E-05 38.8 1.8 22 167-188 397-418 (490)
247 PRK15177 Vi polysaccharide exp 67.8 3.1 6.8E-05 34.7 1.6 21 168-188 101-121 (213)
248 TIGR03740 galliderm_ABC gallid 67.8 3.1 6.8E-05 34.5 1.6 21 168-188 121-141 (223)
249 PRK09984 phosphonate/organopho 67.8 3.9 8.4E-05 34.9 2.2 21 168-188 149-169 (262)
250 cd03229 ABC_Class3 This class 67.6 3.7 8E-05 33.0 1.9 17 172-188 101-117 (178)
251 COG1123 ATPase components of v 67.6 3.9 8.3E-05 39.9 2.3 21 168-188 151-171 (539)
252 PLN03073 ABC transporter F fam 67.4 3.5 7.7E-05 41.2 2.1 21 168-188 624-644 (718)
253 PRK14251 phosphate ABC transpo 67.4 3.7 7.9E-05 34.7 1.9 21 168-188 144-164 (251)
254 PRK14265 phosphate ABC transpo 67.4 4 8.6E-05 35.4 2.2 21 168-188 158-178 (274)
255 PRK14259 phosphate ABC transpo 67.3 3.9 8.4E-05 35.3 2.1 21 168-188 151-171 (269)
256 PRK13633 cobalt transporter AT 67.3 4 8.6E-05 35.4 2.2 20 169-188 142-161 (280)
257 TIGR02868 CydC thiol reductant 67.3 2.9 6.3E-05 39.3 1.4 15 170-184 469-483 (529)
258 cd03299 ABC_ModC_like Archeal 67.2 4 8.8E-05 34.3 2.2 19 170-188 128-146 (235)
259 cd03247 ABCC_cytochrome_bd The 67.1 4.1 8.9E-05 32.7 2.1 20 169-188 96-115 (178)
260 PRK10253 iron-enterobactin tra 67.1 4.1 9E-05 34.9 2.2 21 168-188 140-160 (265)
261 PRK14238 phosphate transporter 66.9 4.1 8.8E-05 35.2 2.2 21 168-188 164-184 (271)
262 cd03223 ABCD_peroxisomal_ALDP 66.9 4.3 9.2E-05 32.5 2.1 20 168-187 88-107 (166)
263 TIGR03873 F420-0_ABC_ATP propo 66.9 4.2 9E-05 34.6 2.2 21 168-188 134-154 (256)
264 PRK10070 glycine betaine trans 66.9 3.8 8.3E-05 38.1 2.1 21 168-188 161-181 (400)
265 PRK11288 araG L-arabinose tran 66.9 3.5 7.7E-05 38.7 1.9 21 168-188 137-157 (501)
266 PRK10261 glutathione transport 66.9 3.8 8.2E-05 39.9 2.1 22 167-188 164-185 (623)
267 cd03230 ABC_DR_subfamily_A Thi 66.8 3.9 8.5E-05 32.7 1.9 17 172-188 96-112 (173)
268 KOG0056|consensus 66.7 2.8 6E-05 41.2 1.2 14 171-184 674-687 (790)
269 PRK14256 phosphate ABC transpo 66.7 4.2 9.2E-05 34.4 2.2 21 168-188 145-165 (252)
270 PRK10636 putative ABC transpor 66.6 3.2 7E-05 40.6 1.6 22 167-188 145-166 (638)
271 PRK14243 phosphate transporter 66.6 4.1 8.9E-05 35.0 2.1 21 168-188 148-168 (264)
272 PRK10851 sulfate/thiosulfate t 66.5 3.8 8.2E-05 37.3 2.0 21 168-188 133-153 (353)
273 PRK15064 ABC transporter ATP-b 66.4 3.7 8.1E-05 38.9 2.0 21 168-188 152-172 (530)
274 PRK14266 phosphate ABC transpo 66.3 4.4 9.5E-05 34.2 2.2 21 168-188 143-163 (250)
275 PRK10418 nikD nickel transport 66.2 4.2 9.1E-05 34.6 2.1 21 168-188 137-157 (254)
276 PRK13650 cbiO cobalt transport 66.2 4.2 9.1E-05 35.3 2.1 20 169-188 138-157 (279)
277 PRK13539 cytochrome c biogenes 66.2 3.9 8.5E-05 33.7 1.8 20 169-188 125-144 (207)
278 PRK13647 cbiO cobalt transport 66.2 4.1 8.8E-05 35.3 2.0 21 168-188 135-155 (274)
279 PRK13409 putative ATPase RIL; 66.1 3.7 8E-05 40.0 1.9 22 167-188 208-229 (590)
280 PRK14275 phosphate ABC transpo 66.1 4 8.7E-05 35.7 2.0 21 168-188 179-199 (286)
281 cd03274 ABC_SMC4_euk Eukaryoti 65.9 5.9 0.00013 33.2 2.9 31 160-190 116-146 (212)
282 TIGR03771 anch_rpt_ABC anchore 65.9 4.2 9E-05 34.0 2.0 21 168-188 110-130 (223)
283 cd03273 ABC_SMC2_euk Eukaryoti 65.9 4.6 9.9E-05 34.4 2.3 22 168-189 163-184 (251)
284 cd03238 ABC_UvrA The excision 65.8 4.7 0.0001 33.2 2.2 21 168-188 84-104 (176)
285 PRK11819 putative ABC transpor 65.7 3.9 8.4E-05 39.2 2.0 20 168-187 442-461 (556)
286 PRK13652 cbiO cobalt transport 65.7 4.6 9.9E-05 35.0 2.3 20 169-188 135-154 (277)
287 PRK13639 cbiO cobalt transport 65.6 4.2 9E-05 35.2 2.0 21 168-188 134-154 (275)
288 PRK09580 sufC cysteine desulfu 65.6 4.4 9.5E-05 34.0 2.1 18 171-188 145-162 (248)
289 cd03271 ABC_UvrA_II The excisi 65.5 4.4 9.5E-05 35.6 2.1 22 167-188 165-186 (261)
290 PRK13632 cbiO cobalt transport 65.4 4.6 0.0001 34.8 2.2 20 169-188 140-159 (271)
291 cd03232 ABC_PDR_domain2 The pl 65.3 4.2 9.1E-05 33.2 1.8 18 171-188 108-125 (192)
292 PRK13642 cbiO cobalt transport 65.2 4.7 0.0001 35.0 2.2 21 168-188 137-157 (277)
293 cd03369 ABCC_NFT1 Domain 2 of 65.2 4.9 0.00011 32.9 2.2 21 168-188 122-142 (207)
294 KOG0055|consensus 65.1 3.5 7.5E-05 43.8 1.6 14 170-183 1125-1138(1228)
295 PRK14261 phosphate ABC transpo 65.0 4.3 9.4E-05 34.4 1.9 21 168-188 146-166 (253)
296 PRK09536 btuD corrinoid ABC tr 65.0 4.2 9.2E-05 37.9 2.0 20 168-187 136-155 (402)
297 PRK13644 cbiO cobalt transport 64.9 4.6 0.0001 35.0 2.1 20 169-188 134-153 (274)
298 cd03279 ABC_sbcCD SbcCD and ot 64.9 5.4 0.00012 33.1 2.4 23 167-189 119-141 (213)
299 cd03246 ABCC_Protease_Secretio 64.8 4.4 9.6E-05 32.4 1.9 17 172-188 97-113 (173)
300 COG1132 MdlB ABC-type multidru 64.8 3.4 7.3E-05 39.4 1.3 16 170-185 464-479 (567)
301 cd03250 ABCC_MRP_domain1 Domai 64.4 5.3 0.00011 32.6 2.3 20 169-188 125-144 (204)
302 PRK10247 putative ABC transpor 64.2 4.9 0.00011 33.5 2.1 21 168-188 134-154 (225)
303 cd03217 ABC_FeS_Assembly ABC-t 64.1 4.8 0.0001 33.0 2.0 19 170-188 103-121 (200)
304 cd03290 ABCC_SUR1_N The SUR do 64.1 5 0.00011 33.1 2.1 21 168-188 137-157 (218)
305 PRK14236 phosphate transporter 64.1 5 0.00011 34.6 2.2 21 168-188 165-185 (272)
306 PRK14271 phosphate ABC transpo 63.6 5 0.00011 34.8 2.1 21 168-188 160-180 (276)
307 PRK13546 teichoic acids export 63.4 5.1 0.00011 34.8 2.1 21 168-188 140-160 (264)
308 cd03213 ABCG_EPDR ABCG transpo 63.3 5.1 0.00011 32.8 2.0 18 171-188 111-128 (194)
309 TIGR02982 heterocyst_DevA ABC 62.9 4.7 0.0001 33.4 1.7 19 170-188 140-158 (220)
310 PRK14264 phosphate ABC transpo 62.8 5.3 0.00012 35.3 2.1 21 168-188 197-217 (305)
311 PRK14260 phosphate ABC transpo 62.7 5.3 0.00011 34.1 2.1 21 168-188 147-167 (259)
312 PRK11176 lipid transporter ATP 62.6 5 0.00011 38.2 2.1 15 170-184 479-493 (582)
313 cd03222 ABC_RNaseL_inhibitor T 62.5 5.2 0.00011 32.9 1.9 17 172-188 72-88 (177)
314 CHL00131 ycf16 sulfate ABC tra 62.2 5.5 0.00012 33.6 2.0 18 171-188 151-168 (252)
315 KOG0057|consensus 61.8 4.3 9.3E-05 39.8 1.4 14 170-183 486-499 (591)
316 cd03228 ABCC_MRP_Like The MRP 61.6 5.3 0.00012 31.9 1.8 17 172-188 97-113 (171)
317 PRK14237 phosphate transporter 61.4 6.1 0.00013 34.0 2.2 21 168-188 160-180 (267)
318 cd03215 ABC_Carb_Monos_II This 61.3 5.1 0.00011 32.3 1.6 17 172-188 105-121 (182)
319 cd03216 ABC_Carb_Monos_I This 61.3 5.8 0.00012 31.6 1.9 18 171-188 82-99 (163)
320 COG5293 Predicted ATPase [Gene 61.0 85 0.0019 30.6 9.8 86 77-163 374-483 (591)
321 COG5265 ATM1 ABC-type transpor 60.9 4.4 9.6E-05 38.8 1.3 14 171-184 399-412 (497)
322 TIGR02204 MsbA_rel ABC transpo 60.8 5.5 0.00012 37.8 2.0 16 170-185 475-490 (576)
323 PRK13640 cbiO cobalt transport 60.6 6.2 0.00013 34.3 2.1 20 169-188 141-160 (282)
324 PRK13635 cbiO cobalt transport 60.6 6.2 0.00013 34.3 2.1 21 168-188 137-157 (279)
325 PF02183 HALZ: Homeobox associ 60.5 30 0.00065 22.6 4.9 28 83-110 13-40 (45)
326 PRK14257 phosphate ABC transpo 60.3 6.2 0.00013 35.5 2.1 20 168-187 222-241 (329)
327 PRK13545 tagH teichoic acids e 60.2 6 0.00013 38.6 2.2 21 168-188 140-160 (549)
328 PRK13636 cbiO cobalt transport 60.1 6.4 0.00014 34.3 2.1 22 167-188 137-158 (283)
329 TIGR00968 3a0106s01 sulfate AB 60.0 6.2 0.00013 33.2 2.0 20 169-188 128-147 (237)
330 TIGR03796 NHPM_micro_ABC1 NHPM 59.2 5.1 0.00011 39.3 1.5 17 170-186 614-630 (710)
331 TIGR01194 cyc_pep_trnsptr cycl 58.9 5.6 0.00012 38.0 1.7 17 170-186 469-485 (555)
332 COG4136 ABC-type uncharacteriz 58.8 5 0.00011 33.9 1.2 17 167-183 130-146 (213)
333 cd03236 ABC_RNaseL_inhibitor_d 58.8 6.4 0.00014 34.0 1.9 21 168-188 136-156 (255)
334 cd03300 ABC_PotA_N PotA is an 58.6 6.8 0.00015 32.8 2.0 19 170-188 129-147 (232)
335 PRK13648 cbiO cobalt transport 58.6 7.2 0.00016 33.5 2.2 20 169-188 140-159 (269)
336 TIGR00958 3a01208 Conjugate Tr 58.3 5.2 0.00011 39.5 1.4 16 170-185 616-631 (711)
337 TIGR03415 ABC_choXWV_ATP choli 58.3 6.3 0.00014 36.5 1.9 21 168-188 161-181 (382)
338 PRK13536 nodulation factor exp 57.6 6.7 0.00014 35.5 1.9 21 168-188 169-189 (340)
339 cd03291 ABCC_CFTR1 The CFTR su 57.4 7.7 0.00017 34.1 2.2 20 169-188 157-176 (282)
340 PRK13537 nodulation ABC transp 57.3 6.7 0.00015 34.7 1.8 21 168-188 135-155 (306)
341 TIGR03797 NHPM_micro_ABC2 NHPM 57.0 5.7 0.00012 38.8 1.4 16 170-185 587-602 (686)
342 KOG0055|consensus 56.7 5.8 0.00013 42.1 1.5 14 171-184 489-502 (1228)
343 cd03241 ABC_RecN RecN ATPase i 56.6 10 0.00022 32.9 2.8 22 168-189 167-188 (276)
344 PRK14252 phosphate ABC transpo 56.4 8.3 0.00018 33.0 2.2 21 168-188 158-178 (265)
345 PF04949 Transcrip_act: Transc 55.8 19 0.00041 29.7 4.0 69 58-126 87-156 (159)
346 COG2274 SunT ABC-type bacterio 55.7 6.3 0.00014 39.5 1.5 17 170-186 608-624 (709)
347 KOG0054|consensus 55.5 6.1 0.00013 42.5 1.4 13 171-183 643-655 (1381)
348 TIGR02857 CydD thiol reductant 55.4 6.5 0.00014 37.0 1.5 16 170-185 457-472 (529)
349 PRK14263 phosphate ABC transpo 54.9 8.9 0.00019 32.9 2.2 20 168-187 146-165 (261)
350 TIGR03522 GldA_ABC_ATP gliding 54.5 8.1 0.00018 34.0 1.9 20 168-187 130-149 (301)
351 PRK13657 cyclic beta-1,2-gluca 54.2 6.8 0.00015 37.5 1.4 15 170-184 470-484 (588)
352 COG4172 ABC-type uncharacteriz 53.9 7.9 0.00017 37.2 1.8 20 168-187 154-173 (534)
353 PTZ00265 multidrug resistance 53.8 7.2 0.00016 42.1 1.7 15 170-184 1357-1371(1466)
354 PF05377 FlaC_arch: Flagella a 53.7 50 0.0011 22.7 5.2 40 88-128 13-52 (55)
355 COG4598 HisP ABC-type histidin 53.2 7.7 0.00017 33.7 1.4 22 168-189 149-170 (256)
356 PF12532 DUF3732: Protein of u 52.7 1.2E+02 0.0025 25.5 8.5 72 113-191 16-91 (193)
357 PRK10790 putative multidrug tr 52.4 7.6 0.00016 37.2 1.4 15 170-184 475-489 (592)
358 KOG4253|consensus 52.4 1.4E+02 0.003 25.0 8.5 40 73-112 35-86 (175)
359 COG1245 Predicted ATPase, RNas 52.3 9.2 0.0002 37.2 1.9 20 168-187 452-471 (591)
360 COG1137 YhbG ABC-type (unclass 51.6 11 0.00024 33.0 2.2 20 169-188 137-156 (243)
361 PHA00728 hypothetical protein 51.4 38 0.00083 27.2 5.0 21 168-188 62-82 (151)
362 COG1125 OpuBA ABC-type proline 51.3 9.5 0.0002 34.5 1.7 21 168-188 132-152 (309)
363 cd07591 BAR_Rvs161p The Bin/Am 51.2 94 0.002 26.6 7.8 62 73-135 2-63 (224)
364 TIGR03375 type_I_sec_LssB type 51.1 8.2 0.00018 37.8 1.4 17 170-186 600-616 (694)
365 TIGR01193 bacteriocin_ABC ABC- 50.7 8.5 0.00018 37.8 1.5 16 170-185 610-625 (708)
366 PRK11160 cysteine/glutathione 50.6 8.5 0.00018 37.0 1.4 17 170-186 474-490 (574)
367 PLN03073 ABC transporter F fam 50.1 9.9 0.00021 38.1 1.9 22 167-188 340-361 (718)
368 PLN03232 ABC transporter C fam 50.0 8.1 0.00017 41.7 1.3 13 171-183 740-752 (1495)
369 cd03221 ABCF_EF-3 ABCF_EF-3 E 49.9 12 0.00025 29.3 1.9 17 172-188 71-87 (144)
370 TIGR01192 chvA glucan exporter 49.9 12 0.00025 36.2 2.3 18 170-187 470-487 (585)
371 TIGR01842 type_I_sec_PrtD type 49.7 9.1 0.0002 36.3 1.5 17 170-186 453-469 (544)
372 cd03288 ABCC_SUR2 The SUR doma 49.4 12 0.00027 31.8 2.1 20 169-188 154-173 (257)
373 COG4618 ArpD ABC-type protease 48.8 9.6 0.00021 37.3 1.5 14 170-183 471-484 (580)
374 PLN03130 ABC transporter C fam 48.5 9.1 0.0002 41.8 1.4 14 170-183 739-752 (1622)
375 COG1131 CcmA ABC-type multidru 48.4 12 0.00025 33.2 1.9 21 167-187 132-152 (293)
376 PF13175 AAA_15: AAA ATPase do 47.8 1.9E+02 0.0041 25.5 9.6 26 165-190 335-360 (415)
377 TIGR00954 3a01203 Peroxysomal 47.8 12 0.00027 36.7 2.1 18 170-187 581-598 (659)
378 PF11014 DUF2852: Protein of u 47.4 96 0.0021 24.4 6.6 42 74-117 65-107 (115)
379 PLN03211 ABC transporter G-25; 47.2 13 0.00028 36.8 2.1 20 169-188 204-223 (659)
380 TIGR00630 uvra excinuclease AB 47.1 13 0.00028 38.6 2.2 22 167-188 483-504 (924)
381 PRK14246 phosphate ABC transpo 46.7 14 0.00031 31.6 2.1 21 168-188 150-170 (257)
382 COG1117 PstB ABC-type phosphat 46.5 14 0.0003 32.7 2.0 19 170-188 148-166 (253)
383 PRK10789 putative multidrug tr 46.1 13 0.00029 35.5 2.0 18 170-187 450-467 (569)
384 PLN03232 ABC transporter C fam 46.0 13 0.00028 40.2 2.1 15 170-184 1370-1384(1495)
385 PRK10522 multidrug transporter 45.2 14 0.00031 35.0 2.1 17 170-186 448-464 (547)
386 PF03961 DUF342: Protein of un 44.7 1.5E+02 0.0032 27.8 8.7 36 75-110 326-362 (451)
387 KOG0063|consensus 43.6 11 0.00023 36.6 0.9 20 168-187 453-472 (592)
388 cd03289 ABCC_CFTR2 The CFTR su 42.8 17 0.00037 31.9 2.0 20 169-188 136-155 (275)
389 KOG0066|consensus 42.6 13 0.00027 36.4 1.2 18 168-185 701-718 (807)
390 TIGR01846 type_I_sec_HlyB type 42.3 14 0.00029 36.3 1.4 17 170-186 592-608 (694)
391 PF05384 DegS: Sensor protein 41.9 1.4E+02 0.003 24.6 7.1 49 79-128 24-72 (159)
392 COG4161 ArtP ABC-type arginine 41.5 14 0.0003 31.7 1.2 15 171-185 141-155 (242)
393 TIGR00957 MRP_assoc_pro multi 41.4 17 0.00036 39.4 2.1 15 170-184 1420-1434(1522)
394 PTZ00243 ABC transporter; Prov 41.2 16 0.00034 39.8 1.8 15 170-184 1444-1458(1560)
395 PF04201 TPD52: Tumour protein 40.7 2.1E+02 0.0046 23.8 8.5 55 77-131 24-82 (162)
396 KOG0927|consensus 40.2 14 0.00031 36.4 1.2 20 167-186 505-524 (614)
397 PF02183 HALZ: Homeobox associ 40.2 1E+02 0.0023 20.0 5.6 32 81-112 4-35 (45)
398 COG4172 ABC-type uncharacteriz 39.4 19 0.0004 34.7 1.8 24 165-188 420-443 (534)
399 PRK09343 prefoldin subunit bet 38.3 1.9E+02 0.004 22.4 7.8 44 94-138 76-119 (121)
400 KOG0064|consensus 38.1 19 0.00042 35.7 1.7 16 171-186 612-627 (728)
401 TIGR00957 MRP_assoc_pro multi 38.0 18 0.00039 39.2 1.7 17 170-186 759-775 (1522)
402 KOG2483|consensus 37.7 23 0.0005 31.0 2.0 78 5-109 60-139 (232)
403 COG4026 Uncharacterized protei 37.0 2.5E+02 0.0053 25.0 8.2 23 82-104 135-157 (290)
404 PRK00349 uvrA excinuclease ABC 36.8 21 0.00046 37.1 1.9 23 167-189 485-507 (943)
405 TIGR00955 3a01204 The Eye Pigm 36.6 23 0.00049 34.5 2.0 19 169-187 164-182 (617)
406 PF06295 DUF1043: Protein of u 36.1 2.1E+02 0.0045 22.3 7.2 42 94-135 30-74 (128)
407 PF06013 WXG100: Proteins of 1 35.9 1.3E+02 0.0029 20.0 6.5 59 76-134 4-67 (86)
408 PRK05771 V-type ATP synthase s 35.8 2.4E+02 0.0051 27.8 8.9 48 79-126 212-259 (646)
409 TIGR01271 CFTR_protein cystic 35.3 23 0.0005 38.4 1.9 15 170-184 1352-1366(1490)
410 cd03227 ABC_Class2 ABC-type Cl 35.0 31 0.00067 27.3 2.2 21 170-190 76-96 (162)
411 PTZ00265 multidrug resistance 35.0 21 0.00046 38.7 1.6 20 168-187 576-595 (1466)
412 TIGR00956 3a01205 Pleiotropic 34.9 24 0.00052 38.0 2.0 21 168-188 206-226 (1394)
413 PRK00349 uvrA excinuclease ABC 34.5 26 0.00057 36.4 2.1 22 167-188 826-847 (943)
414 PF11172 DUF2959: Protein of u 34.1 2.8E+02 0.006 23.9 7.9 42 74-115 55-97 (201)
415 TIGR00630 uvra excinuclease AB 34.1 27 0.00058 36.3 2.1 22 167-188 824-845 (924)
416 COG4175 ProV ABC-type proline/ 33.8 28 0.0006 32.5 1.9 21 167-187 160-180 (386)
417 COG4988 CydD ABC-type transpor 33.8 22 0.00049 34.9 1.4 16 170-185 455-470 (559)
418 PF08946 Osmo_CC: Osmosensory 33.7 1E+02 0.0023 20.4 4.1 28 87-114 10-37 (46)
419 COG4525 TauB ABC-type taurine 33.6 26 0.00057 30.8 1.7 22 167-188 128-149 (259)
420 TIGR02680 conserved hypothetic 33.4 30 0.00065 37.2 2.4 20 168-187 1244-1263(1353)
421 TIGR03642 cas_csx13 CRISPR-ass 33.4 31 0.00067 27.3 2.0 13 171-183 96-108 (124)
422 COG4987 CydC ABC-type transpor 33.4 28 0.00061 34.2 2.0 17 170-186 473-489 (573)
423 PF07526 POX: Associated with 33.4 1.9E+02 0.0041 23.2 6.5 46 90-140 71-116 (140)
424 cd07599 BAR_Rvs167p The Bin/Am 33.2 2.7E+02 0.0058 23.2 7.8 52 82-134 2-53 (216)
425 PLN03130 ABC transporter C fam 33.2 22 0.00048 38.9 1.4 15 170-184 1373-1387(1622)
426 PF05377 FlaC_arch: Flagella a 32.6 1.7E+02 0.0036 20.1 6.1 36 92-128 3-38 (55)
427 PF07673 DUF1602: Protein of u 32.6 16 0.00035 23.4 0.2 11 15-25 13-23 (39)
428 PRK14127 cell division protein 32.6 1.3E+02 0.0028 23.3 5.2 38 75-112 22-60 (109)
429 PF04977 DivIC: Septum formati 31.7 1.7E+02 0.0037 19.9 5.7 32 82-113 17-48 (80)
430 PHA03041 virion core protein; 31.5 2.2E+02 0.0048 23.4 6.6 47 81-127 99-145 (153)
431 PTZ00243 ABC transporter; Prov 31.5 32 0.00069 37.6 2.3 19 169-187 780-798 (1560)
432 PF06193 Orthopox_A5L: Orthopo 31.3 3.1E+02 0.0068 22.9 7.8 49 80-128 112-160 (166)
433 TIGR01257 rim_protein retinal- 30.9 28 0.00062 39.5 1.8 23 166-188 1056-1078(2272)
434 COG1245 Predicted ATPase, RNas 30.8 30 0.00066 33.8 1.8 20 167-186 209-228 (591)
435 PF10073 DUF2312: Uncharacteri 30.7 1.9E+02 0.0041 21.1 5.5 33 80-112 2-34 (74)
436 KOG3856|consensus 30.7 1.2E+02 0.0026 24.3 4.9 37 78-114 6-42 (135)
437 PF04111 APG6: Autophagy prote 30.2 3.7E+02 0.008 24.2 8.6 17 180-196 241-257 (314)
438 PRK13694 hypothetical protein; 29.8 2E+02 0.0044 21.4 5.6 35 78-112 8-42 (83)
439 TIGR01271 CFTR_protein cystic 29.3 36 0.00079 36.9 2.2 18 170-187 547-564 (1490)
440 PF10079 DUF2317: Uncharacteri 29.2 3.4E+02 0.0073 26.6 8.6 42 98-139 461-502 (542)
441 cd08327 CARD_RAIDD Caspase act 29.1 2.5E+02 0.0053 21.0 6.9 28 6-33 3-30 (94)
442 KOG0060|consensus 29.0 32 0.00068 34.3 1.6 16 171-186 570-585 (659)
443 smart00574 POX domain associat 27.1 2.9E+02 0.0062 22.5 6.5 44 92-140 73-116 (140)
444 COG0178 UvrA Excinuclease ATPa 27.1 1.3E+02 0.0027 31.5 5.4 61 100-185 433-495 (935)
445 PRK12765 flagellar capping pro 26.5 2.9E+02 0.0063 27.3 7.7 46 85-130 535-583 (595)
446 PHA01750 hypothetical protein 26.5 1.9E+02 0.0041 20.8 4.8 11 99-109 45-55 (75)
447 COG3750 Uncharacterized protei 26.4 2.6E+02 0.0055 20.8 5.6 32 79-110 11-42 (85)
448 COG4778 PhnL ABC-type phosphon 26.3 23 0.0005 30.5 0.1 18 170-187 151-168 (235)
449 PLN03140 ABC transporter G fam 26.0 44 0.00094 36.4 2.1 19 170-188 1018-1036(1470)
450 PF06005 DUF904: Protein of un 24.9 2.6E+02 0.0057 19.9 9.0 19 79-97 15-33 (72)
451 PRK10535 macrolide transporter 24.8 49 0.0011 32.5 2.1 19 170-188 143-161 (648)
452 COG4178 ABC-type uncharacteriz 24.6 45 0.00098 33.1 1.8 16 171-186 515-530 (604)
453 TIGR02584 cas_NE0113 CRISPR-as 24.5 57 0.0012 28.2 2.2 14 171-184 124-137 (209)
454 KOG4010|consensus 24.0 3.1E+02 0.0068 23.6 6.4 100 80-186 42-145 (208)
455 PF09623 Cas_NE0113: CRISPR-as 23.4 57 0.0012 28.3 2.0 15 171-185 118-132 (224)
456 PHA02109 hypothetical protein 23.4 2.6E+02 0.0056 23.9 5.8 58 60-117 166-228 (233)
457 PRK00888 ftsB cell division pr 23.2 3.4E+02 0.0073 20.5 8.6 31 82-112 27-57 (105)
458 PF03904 DUF334: Domain of unk 23.2 3.4E+02 0.0074 23.9 6.7 74 33-107 8-82 (230)
459 PF08663 HalX: HalX domain; I 22.6 1.3E+02 0.0028 21.5 3.4 25 81-105 35-59 (71)
460 PF10046 BLOC1_2: Biogenesis o 22.5 3.3E+02 0.0071 20.2 6.1 27 73-99 26-52 (99)
461 PF10234 Cluap1: Clusterin-ass 22.5 5.6E+02 0.012 22.9 8.2 23 113-135 220-242 (267)
462 PRK00635 excinuclease ABC subu 22.1 53 0.0011 36.7 1.9 22 167-188 472-493 (1809)
463 PRK10803 tol-pal system protei 21.9 1.9E+02 0.0041 25.3 5.0 51 65-115 40-94 (263)
464 TIGR01257 rim_protein retinal- 21.8 54 0.0012 37.4 1.9 19 169-187 2068-2086(2272)
465 PF08580 KAR9: Yeast cortical 21.8 4.1E+02 0.0088 26.9 7.8 48 87-134 240-288 (683)
466 PRK15326 type III secretion sy 21.6 3.4E+02 0.0073 20.0 6.2 40 73-112 36-75 (80)
467 PRK00635 excinuclease ABC subu 21.4 59 0.0013 36.3 2.1 21 167-187 805-825 (1809)
468 KOG4025|consensus 21.3 1.9E+02 0.0042 24.5 4.6 28 117-144 159-186 (207)
469 KOG0061|consensus 21.3 53 0.0011 32.3 1.6 17 170-186 169-185 (613)
470 PF06705 SF-assemblin: SF-asse 21.3 5.2E+02 0.011 22.0 7.8 44 86-129 89-132 (247)
471 PF09178 DUF1945: Domain of un 20.9 47 0.001 22.3 0.8 16 161-176 20-35 (51)
472 PF04568 IATP: Mitochondrial A 20.8 2.9E+02 0.0062 21.1 5.2 23 89-111 72-98 (100)
473 PF15079 DUF4546: Domain of un 20.5 3.6E+02 0.0079 22.9 6.1 21 114-134 85-105 (205)
474 PRK03947 prefoldin subunit alp 20.4 3.7E+02 0.008 20.8 6.0 31 82-112 6-36 (140)
475 COG1422 Predicted membrane pro 20.3 5.6E+02 0.012 22.0 8.0 28 102-129 97-124 (201)
476 COG1127 Ttg2A ABC-type transpo 20.0 67 0.0015 28.7 1.8 21 168-188 142-162 (263)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.95 E-value=3.7e-28 Score=246.20 Aligned_cols=136 Identities=28% Similarity=0.449 Sum_probs=124.7
Q ss_pred CCCCCCccchh-hhhcCCCCchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 59 KWRSPVSGSDV-TAAVRPTPELPVRDYAKRSKEMQAVLAT-------LNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQEC 130 (199)
Q Consensus 59 ~lr~~~~~i~~-l~~~~~vN~~ai~ey~e~~er~e~L~~e-------~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~i 130 (199)
.|+..+..+.. +..+|+||+.|+++|++..++|++|..+ +++|.+.|++++++++.+|+.+|+.||.+|+.+
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~i 1025 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEI 1025 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655 5779999999999999999888876655 457888999999999999999999999999999
Q ss_pred HhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhcHh
Q psy12760 131 YQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYWLW 194 (199)
Q Consensus 131 F~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~~~ 194 (199)
|+.|++||+|+|.+.+++|||++||+|.|+||||.+++++.|||||||++|||||||||+|+|-
T Consensus 1026 f~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~Pa 1089 (1163)
T COG1196 1026 FKELFGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPA 1089 (1163)
T ss_pred HHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999993
No 2
>KOG0996|consensus
Probab=99.88 E-value=2.7e-22 Score=199.22 Aligned_cols=122 Identities=42% Similarity=0.671 Sum_probs=112.8
Q ss_pred cCCCCchhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEec
Q psy12760 73 VRPTPELPVRDYAKRSK-------EMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYK 145 (199)
Q Consensus 73 ~~~vN~~ai~ey~e~~e-------r~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~l~ 145 (199)
++.+|..++.+|....+ +++.....+++.++.+++|+++|.+.|+..|.-|+.++.++|++++.||+|+|++.
T Consensus 1090 l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElV 1169 (1293)
T KOG0996|consen 1090 LREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELV 1169 (1293)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEee
Confidence 77888889888876654 44445567788999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhcHh
Q psy12760 146 EYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYWLW 194 (199)
Q Consensus 146 ~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~~~ 194 (199)
+..|||..||.+.|+||.|.|+.+..|||||||+++|||+|||++|+|-
T Consensus 1170 DslDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1170 DSLDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPT 1218 (1293)
T ss_pred ccCCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999999993
No 3
>KOG0018|consensus
Probab=99.88 E-value=2e-22 Score=198.99 Aligned_cols=124 Identities=30% Similarity=0.475 Sum_probs=112.5
Q ss_pred hhhcCCCCchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceEEEE
Q psy12760 70 TAAVRPTPELPVRDY-----AKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTF-GGKADLE 143 (199)
Q Consensus 70 l~~~~~vN~~ai~ey-----~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~-gG~a~L~ 143 (199)
+.++ .-|..|++.| ++..++++.++++.+.++..+.+++++|..+|++||++|+.+++.||+.|++ -|.|+|.
T Consensus 945 l~~~-~Pn~kA~~~~d~v~~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Ltnt~g~AyL~ 1023 (1141)
T KOG0018|consen 945 LNRI-APNLKALERLDEVRFQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELTNTEGQAYLG 1023 (1141)
T ss_pred HHHh-CcchHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec
Confidence 4456 5566776655 5566788889999999999999999999999999999999999999999983 3899999
Q ss_pred eccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhcHh
Q psy12760 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYWLW 194 (199)
Q Consensus 144 l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~~~ 194 (199)
++|+++||..||.+.++||||+.++++.|||||||++||||+||++.|+|-
T Consensus 1024 ~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~Pa 1074 (1141)
T KOG0018|consen 1024 LENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPA 1074 (1141)
T ss_pred CCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999883
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.85 E-value=9.4e-21 Score=188.30 Aligned_cols=135 Identities=23% Similarity=0.448 Sum_probs=119.6
Q ss_pred CCCCCCCccchh-hhhcCCCCchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 58 SKWRSPVSGSDV-TAAVRPTPELPVRDYAKRSKEMQAVL-------ATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQE 129 (199)
Q Consensus 58 ~~lr~~~~~i~~-l~~~~~vN~~ai~ey~e~~er~e~L~-------~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~ 129 (199)
..++..++++.. +..++++|..|+++|+++.++|+.+. ..++.+.+.|+.|++++...|..+|+.|+.+|+.
T Consensus 954 ~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~ 1033 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNE 1033 (1164)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544 66799999999999999888766655 5556788899999999999999999999999999
Q ss_pred HHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhcH
Q psy12760 130 CYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYWL 193 (199)
Q Consensus 130 iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~~ 193 (199)
+|+.|+ ||.|.|.+++++||+..||.|.|.|||+...++..||||||++++||++||+|.++|
T Consensus 1034 ~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~ 1096 (1164)
T TIGR02169 1034 IFAELS-GGTGELILENPDDPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKP 1096 (1164)
T ss_pred HHHHHh-CCeEEEEecCCCCcccCCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCC
Confidence 999999 999999999999999999999999999988899999999999999999999998877
No 5
>KOG0964|consensus
Probab=99.78 E-value=9e-19 Score=172.06 Aligned_cols=125 Identities=19% Similarity=0.231 Sum_probs=103.9
Q ss_pred hhhcCCCCchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEE
Q psy12760 70 TAAVRPTPELPVRDYAKRSKEMQ-------AVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADL 142 (199)
Q Consensus 70 l~~~~~vN~~ai~ey~e~~er~e-------~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L 142 (199)
+..+++||..|+++|....++.+ +|....++|.+.|..|++++.++...+|.+|.++|+++|+.|.|||.|.|
T Consensus 965 lk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LVp~G~a~i 1044 (1200)
T KOG0964|consen 965 LKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLVPGGTALI 1044 (1200)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCceee
Confidence 44589999999999976655554 45555678999999999999999999999999999999999999999976
Q ss_pred EeccCC--------CC-C-------------CcceEEEEECCCC--cccccccCCcchHHHHHHHHHHHHHHhcHh
Q psy12760 143 EYKEYS--------DP-Y-------------AQGIKYVVRPPRK--SWKSIDCLSGGEKTLASLALVFALHYYWLW 194 (199)
Q Consensus 143 ~l~~~e--------dp-~-------------~~GI~I~V~p~gk--~~~~l~~LSGGEKSlaaLalIfAL~~~~~~ 194 (199)
.+...+ |. . ..||.|+|.|.++ ....+.+|||||||++|||||||+|++.|-
T Consensus 1045 im~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaIQrcDPA 1120 (1200)
T KOG0964|consen 1045 IMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDPA 1120 (1200)
T ss_pred hhhccccccccccccccccccccccccchhhccceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCc
Confidence 653211 11 1 2489999999864 456888999999999999999999999984
No 6
>KOG0933|consensus
Probab=99.73 E-value=7.7e-18 Score=165.99 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEE
Q psy12760 81 VRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVR 160 (199)
Q Consensus 81 i~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~ 160 (199)
.+.|.+++.+.+.+...+.+|++.|+.+|+++++.+..++.+||..|..||+.|+||..|+|...+..+ +..|++++|.
T Consensus 993 E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~-~~dGLEvkV~ 1071 (1174)
T KOG0933|consen 993 EEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKT-VLDGLEVKVK 1071 (1174)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCc-cccceEEEEE
Confidence 345555666666677777799999999999999999999999999999999999999999998776655 5669999999
Q ss_pred CCCCcccccccCCcchHHHHHHHHHHHHHHhcHh
Q psy12760 161 PPRKSWKSIDCLSGGEKTLASLALVFALHYYWLW 194 (199)
Q Consensus 161 p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~~~ 194 (199)
++|-...++..|||||||++||||||||..|+|-
T Consensus 1072 ~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPA 1105 (1174)
T KOG0933|consen 1072 FGGIWKESLSELSGGQRSLVALSLILAMLKFKPA 1105 (1174)
T ss_pred eCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCC
Confidence 9877778999999999999999999999999994
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.71 E-value=1.7e-16 Score=157.18 Aligned_cols=125 Identities=24% Similarity=0.319 Sum_probs=115.6
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhc----CCceEE
Q psy12760 69 VTAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEF---DTNFVKIGKRVQECYQMLT----FGGKAD 141 (199)
Q Consensus 69 ~l~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F---~~~f~~In~~fs~iF~~L~----~gG~a~ 141 (199)
.++.++++|+.|++.|..+..++++|..+++.+.+.|.++++....+| ..+|..|+.+|+.+|..|| +||.+.
T Consensus 980 aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~ 1059 (1179)
T TIGR02168 980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAE 1059 (1179)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 355688999999999999999999999999999999999999999999 9999999999997777776 799999
Q ss_pred EEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhcH
Q psy12760 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYWL 193 (199)
Q Consensus 142 L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~~ 193 (199)
|.+++++|||..|+.|.|.|+++....+..||||||+++++|++||++.+.|
T Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~ 1111 (1179)
T TIGR02168 1060 LRLTDPEDLLEAGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKP 1111 (1179)
T ss_pred EEeCCCCcccccCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999888899999999999999999999987776
No 8
>KOG0979|consensus
Probab=99.65 E-value=1.7e-15 Score=149.77 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=130.2
Q ss_pred hhhhhhhccc-cchhhHHHHHhHhhhccCCcccccCCCCCCC------C--CCCCCCCCCccchh--------hhhcCCC
Q psy12760 14 KKRRAIVTRP-CSITSWMAVLSISDILSNSSIHTTPRSANTM------A--PASKWRSPVSGSDV--------TAAVRPT 76 (199)
Q Consensus 14 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~--p~~~lr~~~~~i~~--------l~~~~~v 76 (199)
+|--|--+++ |++.+|+-+ +|.++... + ....+++..++++. ..++-.+
T Consensus 792 ~k~~a~~~~~~~~~~t~~~~--------------~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ 857 (1072)
T KOG0979|consen 792 KKKEAAEKRKEQSLQTLKRE--------------IMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENV 857 (1072)
T ss_pred HHHHHHhcccchhHHHhhhc--------------cccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3444556777 999999753 23333333 1 12556666666644 2237789
Q ss_pred CchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCC
Q psy12760 77 PELPVRDYAKRSKEMQAVLAT-------LNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSD 149 (199)
Q Consensus 77 N~~ai~ey~e~~er~e~L~~e-------~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~ed 149 (199)
|..++++|+.+.+++..|... ++.+++.+.++++.|.+.+.+.+.+||.+|+++|+.+.+.|++.|.. ++.|
T Consensus 858 ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~-~~~D 936 (1072)
T KOG0979|consen 858 NEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEV-NPLD 936 (1072)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEecc-Cccc
Confidence 999999999999888887655 45788899999999999999999999999999999999999999975 6777
Q ss_pred CCCcceEEEEECC-CCccccc--ccCCcchHHHHHHHHHHHHHHhcH
Q psy12760 150 PYAQGIKYVVRPP-RKSWKSI--DCLSGGEKTLASLALVFALHYYWL 193 (199)
Q Consensus 150 p~~~GI~I~V~p~-gk~~~~l--~~LSGGEKSlaaLalIfAL~~~~~ 193 (199)
.-..||.|.|+|+ +..++.+ +.+||||||++++-|++|||.+.|
T Consensus 937 ydkwgI~ImVkFR~s~~L~~L~sh~QSGGERSVSTiLYLlALQ~l~~ 983 (1072)
T KOG0979|consen 937 YDKWGIMIMVKFRDSEGLKVLDSHRQSGGERSVSTILYLLALQELTP 983 (1072)
T ss_pred HhHhceEEEEEEccCcccccccccccCCcchHHHHHHHHHHHhhccC
Confidence 6667999999999 4456555 579999999999999999999987
No 9
>KOG0250|consensus
Probab=98.54 E-value=5.4e-07 Score=90.99 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--CCceEEEEeccCCCCCCcceEEEE-ECCC-Cc--ccccccCCcchHHHHHHHH
Q psy12760 111 KRQKEFDTNFVKIGKRVQECYQMLT--FGGKADLEYKEYSDPYAQGIKYVV-RPPR-KS--WKSIDCLSGGEKTLASLAL 184 (199)
Q Consensus 111 kr~~~F~~~f~~In~~fs~iF~~L~--~gG~a~L~l~~~edp~~~GI~I~V-~p~g-k~--~~~l~~LSGGEKSlaaLal 184 (199)
.|...|...=..++......|..++ .|.++.+..++++. .++|.| .|++ +. ..+++.|||||||++++||
T Consensus 927 ~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg~l~~~~e~k----tl~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~l 1002 (1074)
T KOG0250|consen 927 SREQKYQKFRKLLTRRATEEFDALLGKRGFSGKLEFDHEEK----TLSISVKLPTSGNEKAVRDTRGLSGGERSFSTVCL 1002 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeeccccc----ccchhhccCCCCcccccccccccCcccchHHHHHH
Confidence 3344444455556666667788887 56678898887664 567777 5553 33 6788999999999999999
Q ss_pred HHHHHHhc
Q psy12760 185 VFALHYYW 192 (199)
Q Consensus 185 IfAL~~~~ 192 (199)
++|||...
T Consensus 1003 llsLW~~m 1010 (1074)
T KOG0250|consen 1003 LLSLWEVM 1010 (1074)
T ss_pred HHHHhHhh
Confidence 99999864
No 10
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.08 E-value=7.6e-05 Score=72.62 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCc--eEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhc
Q psy12760 118 TNFVKIGKRVQECYQMLTFGG--KADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYW 192 (199)
Q Consensus 118 ~~f~~In~~fs~iF~~L~~gG--~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~ 192 (199)
.....+...++.+|+.|.... ...+.++. + ...+.+.-+++...+...||||||++.++||++||.++.
T Consensus 502 ~~~~~le~~~~~~f~~l~~k~~~~~~v~id~-~-----~~~~~l~~~~g~~~~~~~lS~Ge~~~~~la~~~al~~~~ 572 (650)
T TIGR03185 502 RKLQQLEEEITKSFKKLMRKHNLISRLKIDP-E-----TFAVSLYDNNGKHIDKERLSAGERQILAIALLWGLAKVS 572 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcccCceeEEEEcC-C-----ceeEEEEcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345567788889999998532 24455432 2 233444443344557889999999999999999998753
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.07 E-value=0.0001 Score=73.08 Aligned_cols=70 Identities=27% Similarity=0.387 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHh
Q psy12760 117 DTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 117 ~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~ 191 (199)
..+++.|+..++.+|+.+..|+...+.+..++ ..+.+.+..+| ...++..|||||+..++||+.+||..+
T Consensus 739 ~~~~~~l~~~~~~if~~l~~~~~~~~~l~~~~----~~~~i~~l~~g-~~~~~~~lS~G~~~~~~la~rlal~~~ 808 (880)
T PRK03918 739 ERALSKVGEIASEIFEELTEGKYSGVRVKAEE----NKVKLFVVYQG-KERPLTFLSGGERIALGLAFRLALSLY 808 (880)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEEEecCC----CceEEEEeCCC-CcCChhhCCHhHHHHHHHHHHHHHHHH
Confidence 34677888888999999986554444543221 24566665544 345778999999999999998887644
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.03 E-value=0.00011 Score=73.11 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhhcCC-ceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHh
Q psy12760 119 NFVKIGKRVQECYQMLTFG-GKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 119 ~f~~In~~fs~iF~~L~~g-G~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~ 191 (199)
....+...|+.+|+.++.+ +...|.+++ + .+|.+ +.++|+. .++..||||||...+|||.+|+..+
T Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~---~~i~~-~~~~g~~-~~~~~lS~G~~~~~~lalr~a~~~~ 801 (880)
T PRK02224 735 NVETLERMLNETFDLVYQNDAYSHIELDG--E---YELTV-YQKDGEP-LEPEQLSGGERALFNLSLRCAIYRL 801 (880)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeeEEEecC--C---cceee-eCCCCCc-cChhhcCccHHHHHHHHHHHHHHHH
Confidence 3566777899999988754 456776632 2 25554 3445544 3668999999999999999998764
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00016 Score=72.80 Aligned_cols=77 Identities=31% Similarity=0.345 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceEEEE-eccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHH
Q psy12760 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLE-YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 112 r~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~-l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
+...+....+.+...++.+|..+..++. .+. .....+ ...|..+.|.-++. +.++..|||||+.+++|||-+||..
T Consensus 758 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~-~r~~~~LSGGE~~~~sLalrLALs~ 834 (908)
T COG0419 758 RADILRNLLAQIEAEANEILSKLSLNRY-DLRRLTIRKD-GNGGLVVVVYDGGE-VRPIKTLSGGERFLASLALRLALSD 834 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHhc-cccceEEEEecCCC-ccccccCCchHHHHHHHHHHHHHHH
Confidence 4666777888899999999999986543 221 001111 11145555554444 7899999999999999999999987
Q ss_pred h
Q psy12760 191 Y 191 (199)
Q Consensus 191 ~ 191 (199)
+
T Consensus 835 ~ 835 (908)
T COG0419 835 L 835 (908)
T ss_pred H
Confidence 5
No 14
>PRK10869 recombination and repair protein; Provisional
Probab=97.77 E-value=0.00048 Score=66.24 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhc-CCceEEEEeccCCCC-CC---cceEEEEEC-CCCcccccc-cCCcchHHHHHHHHHHHHHH
Q psy12760 119 NFVKIGKRVQECYQMLT-FGGKADLEYKEYSDP-YA---QGIKYVVRP-PRKSWKSID-CLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 119 ~f~~In~~fs~iF~~L~-~gG~a~L~l~~~edp-~~---~GI~I~V~p-~gk~~~~l~-~LSGGEKSlaaLalIfAL~~ 190 (199)
+...+.+.+....+.|. +++...+.+.....+ .. ..|++.+.+ ||...+++. .+||||+++++||+.+++..
T Consensus 371 aA~~l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~ 449 (553)
T PRK10869 371 YAKELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITAR 449 (553)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhcc
Confidence 33444444444445554 455555555322211 12 358888886 477888874 79999999999999999864
No 15
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.58 E-value=0.0015 Score=62.62 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=30.8
Q ss_pred ceEEEEEC-CCCccccc-ccCCcchHHHHHHHHHHHHHH
Q psy12760 154 GIKYVVRP-PRKSWKSI-DCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 154 GI~I~V~p-~gk~~~~l-~~LSGGEKSlaaLalIfAL~~ 190 (199)
.|++.+.+ ||...+++ ..+||||++++++|..+++..
T Consensus 421 ~v~f~~~~n~g~~~~pl~~~lSgGe~~rv~la~~l~~~~ 459 (563)
T TIGR00634 421 QVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSS 459 (563)
T ss_pred EEEEEEecCCCCCCCChhhhcCHhHHHHHHHHHHHhhCC
Confidence 48888877 58777877 589999999999998888753
No 16
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.06 E-value=0.00031 Score=58.41 Aligned_cols=24 Identities=54% Similarity=0.706 Sum_probs=20.3
Q ss_pred cCCcchHHHHHHHHHHHHHHhcHh
Q psy12760 171 CLSGGEKTLASLALVFALHYYWLW 194 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL~~~~~~ 194 (199)
.||||||++++|||+||++++.|.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~ 159 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPS 159 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--
T ss_pred cccccccccccccccccccccccc
Confidence 699999999999999999999875
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.04 E-value=0.0061 Score=57.51 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHH
Q psy12760 117 DTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 117 ~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL 188 (199)
...+..++..+.+++..+. + .+.+..++ |+...+...|....+...||||||.+++||+.||+
T Consensus 423 ~~~l~~~n~~~~~~L~~l~--~--~~~~~~~~-----~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~ 485 (562)
T PHA02562 423 KKYIPYFNKQINHYLQIME--A--DYNFTLDE-----EFNETIKSRGREDFSYASFSQGEKARIDLALLFTW 485 (562)
T ss_pred HHHHHHHHHHHHHHHHHhh--e--eEEEEech-----hhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHH
Confidence 3455666667777666663 2 33333222 44444555555444678999999999999999985
No 18
>PF13166 AAA_13: AAA domain
Probab=96.24 E-value=0.092 Score=51.16 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=25.7
Q ss_pred cceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHH
Q psy12760 153 QGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 153 ~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
.|..|.. +|+ ......||-|||+.+|+|+.||...
T Consensus 485 ~~y~l~~--~~~-~~~~~~LSEGEk~~iAf~yFla~l~ 519 (712)
T PF13166_consen 485 KGYKLQR--KGG-SKPAKILSEGEKRAIAFAYFLAELK 519 (712)
T ss_pred CeEEEEE--CCC-CcccCccCHHHHHHHHHHHHHHHHh
Confidence 3555544 332 2344899999999999999999876
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=96.13 E-value=0.025 Score=56.74 Aligned_cols=29 Identities=41% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCcccccccCCcchHHHHHHHHHHHHHHh
Q psy12760 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 163 gk~~~~l~~LSGGEKSlaaLalIfAL~~~ 191 (199)
+....++..|||||+..+|||+.+|+..+
T Consensus 793 ~~~~~~~~~lS~G~~~~~~la~rlala~~ 821 (895)
T PRK01156 793 GGMVEGIDSLSGGEKTAVAFALRVAVAQF 821 (895)
T ss_pred CCccCccccCCHhHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999998654
No 20
>PF13514 AAA_27: AAA domain
Probab=96.04 E-value=0.093 Score=54.33 Aligned_cols=70 Identities=26% Similarity=0.194 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhc
Q psy12760 119 NFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYW 192 (199)
Q Consensus 119 ~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~ 192 (199)
....|....+.+|+.|+.|....|.++.+.+ +..+.|..+++...++..||+|=+--.-||+.||+....
T Consensus 977 ~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~----~~~l~~~~~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~ 1046 (1111)
T PF13514_consen 977 RQPPVLARASEYFSRLTGGRYSRLRVDEDGD----KPVLVVVRADGERVPVEELSRGTRDQLYLALRLALAELL 1046 (1111)
T ss_pred hhHHHHHHHHHHHHHHhCCCCceeeeccccC----cccceEEecCCeEeeHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3467777888999999988778887765322 333445545555678899999999999999999998754
No 21
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=95.02 E-value=0.035 Score=40.92 Aligned_cols=26 Identities=46% Similarity=0.402 Sum_probs=20.6
Q ss_pred ccccccCCcchH-HHHHHHHHHHHHHh
Q psy12760 166 WKSIDCLSGGEK-TLASLALVFALHYY 191 (199)
Q Consensus 166 ~~~l~~LSGGEK-SlaaLalIfAL~~~ 191 (199)
......+||||| ..+++++..|+...
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~ 53 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAAL 53 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHH
Confidence 356789999999 88999999888754
No 22
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.66 Score=45.21 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=31.6
Q ss_pred ceEEEEECC-CCccccc-ccCCcchHHHHHHHHHHHHHHh
Q psy12760 154 GIKYVVRPP-RKSWKSI-DCLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 154 GI~I~V~p~-gk~~~~l-~~LSGGEKSlaaLalIfAL~~~ 191 (199)
-|++.+++. |.+.+++ +.-||||=|+..||+-.++...
T Consensus 412 ~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~ 451 (557)
T COG0497 412 KVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRK 451 (557)
T ss_pred eEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhcc
Confidence 677888774 7788887 5899999999999998887665
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.66 E-value=0.068 Score=51.62 Aligned_cols=94 Identities=9% Similarity=0.085 Sum_probs=68.5
Q ss_pred HhhhccCCcccccCCCCCCCCCCCCCCCCCccchh-hhhcCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 35 ISDILSNSSIHTTPRSANTMAPASKWRSPVSGSDV-TAAVRPTPELPVR-DYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~p~~~lr~~~~~i~~-l~~~~~vN~~ai~-ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
+-..+-++.+|-+|...-+++. .....++.+.. +.. ||||+.|++ +|++..++++.|..+..++.+....+.+..
T Consensus 430 ikr~l~k~~lpgip~~y~~~~~--~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I 506 (569)
T PRK04778 430 IKRYLEKSNLPGLPEDYLEMFF--EVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLI 506 (569)
T ss_pred HHHHHHHcCCCCCcHHHHHHHH--HHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777766444333 33444555544 445 999999999 999999999999999988877655555432
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q psy12760 113 --QKEFDTNFVKIGKRVQECY 131 (199)
Q Consensus 113 --~~~F~~~f~~In~~fs~iF 131 (199)
..+|..+|+.|+.+|..--
T Consensus 507 qy~nRfr~~~~~V~~~f~~Ae 527 (569)
T PRK04778 507 QYANRYRSDNEEVAEALNEAE 527 (569)
T ss_pred HHHhccCCCCHHHHHHHHHHH
Confidence 8899999999999999543
No 24
>PRK00064 recF recombination protein F; Reviewed
Probab=93.84 E-value=2.3 Score=38.78 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCc-eEEEEeccCC------------------------------CCCCcceEEEEECCCCc
Q psy12760 117 DTNFVKIGKRVQECYQMLTFGG-KADLEYKEYS------------------------------DPYAQGIKYVVRPPRKS 165 (199)
Q Consensus 117 ~~~f~~In~~fs~iF~~L~~gG-~a~L~l~~~e------------------------------dp~~~GI~I~V~p~gk~ 165 (199)
..+++.++..|+++|+.+..+. ...+.+.... -|.-+.+.+.+ .|
T Consensus 192 ~~~~~~L~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHrdDl~~~~--~g-- 267 (361)
T PRK00064 192 LEYLERLAPLAAKTHQEISPEFELASLSYQSSVEDDAEKIEEDLLEALAKNRERDRARGRTLVGPHRDDLRFRI--NG-- 267 (361)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcchhHHHHHHHHHHHHhHHHHHhcCCCCCCcchhceEEEE--CC--
Confidence 3478899999999999986432 4455443220 01111233333 23
Q ss_pred ccccccCCcchHHHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
......+|+||+..+++|+.+|-..
T Consensus 268 ~~~~~~~S~Gq~~~~~lal~la~~~ 292 (361)
T PRK00064 268 LPAADFGSTGQQKLLLLALKLAEAE 292 (361)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHH
Confidence 3455689999999999999998543
No 25
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=0.99 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=20.0
Q ss_pred ccCCcchHHHHHHHHHHHHHHhcH
Q psy12760 170 DCLSGGEKTLASLALVFALHYYWL 193 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL~~~~~ 193 (199)
+.||-|||+..|++|.+|=.+-+|
T Consensus 528 n~LSEGekt~iaf~yflakL~enp 551 (758)
T COG4694 528 NTLSEGEKTFIAFLYFLAKLKENP 551 (758)
T ss_pred ccccccchhHHHHHHHHHHHHhCc
Confidence 469999999999999988766555
No 26
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.03 E-value=0.94 Score=46.70 Aligned_cols=27 Identities=48% Similarity=0.557 Sum_probs=22.6
Q ss_pred CCcccccccCCcchHHHHHHHHHHHHH
Q psy12760 163 RKSWKSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 163 gk~~~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
+....++..|||||+.+++||+.+++.
T Consensus 942 ~~~~r~~~~lSgGe~~~~~la~al~ls 968 (1042)
T TIGR00618 942 TGSVRPSATLSGGETFLASLSLALALA 968 (1042)
T ss_pred CCCcCCcccCCHHHHHHHHHHHHHHHH
Confidence 344567789999999999999999983
No 27
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.99 E-value=5.1 Score=36.72 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCc-eEEEEeccC----CC----------------------CCCcceEEEEECCCCcccccc
Q psy12760 118 TNFVKIGKRVQECYQMLTFGG-KADLEYKEY----SD----------------------PYAQGIKYVVRPPRKSWKSID 170 (199)
Q Consensus 118 ~~f~~In~~fs~iF~~L~~gG-~a~L~l~~~----ed----------------------p~~~GI~I~V~p~gk~~~~l~ 170 (199)
.+++.++..|+.+|..+..+. ...+..... .+ |.-+.+.+.+ .|.. --.
T Consensus 199 ~~~~~l~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~L~~~~~~d~~~g~T~~GPHRdDl~~~~--~g~~--~~~ 274 (365)
T TIGR00611 199 EFIEKLEPEAQKAHQLLLPELESLSLFYRGELWDKETDYAEALARNFERDLERGYTLVGPHRDDLRFRL--NGLP--VED 274 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEEeCchHHHHHHHHHHHHHhHHHHHHcCCCCCCcchhceEEEE--CCEE--HHH
Confidence 378888999999999986443 455555421 01 2223444444 2221 124
Q ss_pred cCCcchHHHHHHHHHHHHHHh
Q psy12760 171 CLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL~~~ 191 (199)
.+|+||+..+++|+.+|-..+
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~ 295 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGEL 295 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHH
Confidence 799999999999999987543
No 28
>PRK14079 recF recombination protein F; Provisional
Probab=91.86 E-value=4.4 Score=36.76 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEeccC--CC----------------------CCCcceEEEEECCCCcccccccC
Q psy12760 117 DTNFVKIGKRVQECYQMLTFGGKADLEYKEY--SD----------------------PYAQGIKYVVRPPRKSWKSIDCL 172 (199)
Q Consensus 117 ~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~--ed----------------------p~~~GI~I~V~p~gk~~~~l~~L 172 (199)
...++.++..++++|+.+..+....+..... .+ |.-+.+.+.+ .|+. --..+
T Consensus 189 ~~~~~~l~~~~~~~~~~l~~~~~l~l~y~~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHRdD~~~~~--~g~~--~~~~~ 264 (349)
T PRK14079 189 RRALTRLSELAREAYAELGSRKPLRLELSESTAPEGYLAALEARRAEELARGATVVGPHRDDLVLTL--EGRP--AHRYA 264 (349)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCcEEEEEecCcCHHHHHHHHHHhhHHHHHcCCCCCCCchhceEEEE--CCEe--hHHhC
Confidence 3478899999999999984223344433221 01 1122333333 2322 22479
Q ss_pred CcchHHHHHHHHHHH
Q psy12760 173 SGGEKTLASLALVFA 187 (199)
Q Consensus 173 SGGEKSlaaLalIfA 187 (199)
|+||+..+++|+.+|
T Consensus 265 S~Gqqr~~~lal~la 279 (349)
T PRK14079 265 SRGEARTVALALRLA 279 (349)
T ss_pred ChhHHHHHHHHHHHH
Confidence 999999999999998
No 29
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.71 E-value=1.8 Score=44.88 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=26.7
Q ss_pred ceEEEEEC--CCCcccccccCCcchHHHHHHHHHHHH
Q psy12760 154 GIKYVVRP--PRKSWKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 154 GI~I~V~p--~gk~~~~l~~LSGGEKSlaaLalIfAL 188 (199)
|+++.|.- .+....+...|||||+.+++||+.+++
T Consensus 930 ~l~~~~~d~~~~~~~r~~~~LSgGe~~~~~la~al~~ 966 (1047)
T PRK10246 930 ALELEVVDTWQADAVRDTRTLSGGESFLVSLALALAL 966 (1047)
T ss_pred CCceeeeehhccCCCCCcccCCHHHHHHHHHHHHHHh
Confidence 66655543 234456788999999999999999997
No 30
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.37 E-value=0.058 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.5
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
.+...||||||+++|||=++|+.
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcC
Confidence 45678999999999999999986
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.76 E-value=0.17 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.0
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+...+||||||+++|+|=-++
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHh
Confidence 345799999999999986554
No 32
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.65 E-value=0.22 Score=43.97 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+.+++||||||+++-+|-.+|
T Consensus 134 r~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 134 RPVDELSGGERQRVLIARALA 154 (258)
T ss_pred CcccccChhHHHHHHHHHHHh
Confidence 456789999999999997776
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.57 E-value=2 Score=45.58 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhcCCceE-EEEeccCCCC-----C--CcceEEEE-ECCCCc-ccccccCCcchHHHHHHHHHHHHH
Q psy12760 120 FVKIGKRVQECYQMLTFGGKA-DLEYKEYSDP-----Y--AQGIKYVV-RPPRKS-WKSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 120 f~~In~~fs~iF~~L~~gG~a-~L~l~~~edp-----~--~~GI~I~V-~p~gk~-~~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
.+.||..+.++|...+.|-.+ .+.+ .++.. . ...-.+.+ .|.|.. ......||||||.+++|.+.+||.
T Consensus 1139 ~~~~n~~~~~~w~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala 1217 (1311)
T TIGR00606 1139 MEEINKIIRDLWRSTYRGQDIEYIEI-RSDADENVSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALA 1217 (1311)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHhhc-CCCCChHHHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHH
Confidence 678999999999999965432 2333 22211 0 11222333 344422 233368999999988777777665
Q ss_pred H
Q psy12760 190 Y 190 (199)
Q Consensus 190 ~ 190 (199)
.
T Consensus 1218 ~ 1218 (1311)
T TIGR00606 1218 E 1218 (1311)
T ss_pred H
Confidence 4
No 34
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.17 E-value=1.8 Score=43.80 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQ 132 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~ 132 (199)
...+|+.+.+.++.|...+.++.+.+..+.+++.+.|..++++++..|..+|.
T Consensus 998 l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFP 1050 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777766677777777777777776664
No 35
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=87.25 E-value=0.29 Score=41.81 Aligned_cols=32 Identities=56% Similarity=0.952 Sum_probs=26.0
Q ss_pred EECCCCcccccccCCcchHHHHHHHHHHHHHH
Q psy12760 159 VRPPRKSWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 159 V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
..|+++....+..||||||.+++||..++...
T Consensus 143 ~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 143 KNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 34556666777899999999999999999753
No 36
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.70 E-value=1.4 Score=36.02 Aligned_cols=30 Identities=53% Similarity=0.759 Sum_probs=22.1
Q ss_pred EEEECCCCcccccccCCcchHHHHHHHHHHHHH
Q psy12760 157 YVVRPPRKSWKSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 157 I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
+..-|.|+.. .+ ||||||.+++++..++.+
T Consensus 83 ~~~~~~~~~~-~~--LS~Ge~~r~~Laral~~~ 112 (178)
T cd03239 83 YFLVLQGKVE-QI--LSGGEKSLSALALIFALQ 112 (178)
T ss_pred eEEecCCcCc-cc--CCHHHHHHHHHHHHHHHh
Confidence 4454555443 33 999999999999998864
No 37
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=16 Score=37.79 Aligned_cols=62 Identities=29% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhc
Q psy12760 125 KRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYW 192 (199)
Q Consensus 125 ~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~ 192 (199)
..-+.+|..|+.|-.-.+....++| .|.|.-..+.......||-|=|=-.=+|+.||+.+..
T Consensus 861 ~~A~~~F~hlT~G~Yt~Iy~~e~~d------~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~ 922 (984)
T COG4717 861 QEASEFFMHLTDGRYTGIYTQEDKD------SIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEV 922 (984)
T ss_pred HHHHHHHhhccCCceeeeecccCCc------eeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 4456889999976666665543332 5667766666677789999999999999999998753
No 38
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=84.88 E-value=0.46 Score=40.96 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.8
Q ss_pred ccccCCcchHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALV 185 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalI 185 (199)
-..+||||||+++|||=-
T Consensus 126 LP~~LSGGqRQRvALARc 143 (231)
T COG3840 126 LPGELSGGQRQRVALARC 143 (231)
T ss_pred CccccCchHHHHHHHHHH
Confidence 345899999999999853
No 39
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=84.69 E-value=0.5 Score=40.81 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=14.9
Q ss_pred cccccCCcchHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLAL 184 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLal 184 (199)
.-..+|||||++.+|+|=
T Consensus 133 ~lP~~LSGGEQQRvaIAR 150 (223)
T COG2884 133 ALPSQLSGGEQQRVAIAR 150 (223)
T ss_pred cCccccCchHHHHHHHHH
Confidence 344689999999999984
No 40
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.35 E-value=0.24 Score=43.16 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=18.2
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+.+++||||||+++=+|.++|
T Consensus 131 ryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 131 RYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HhHHhcccchhhhhhhheeee
Confidence 467899999999999998876
No 41
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.88 E-value=0.43 Score=41.75 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.0
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....+||||||+++|+|=-+|+.
T Consensus 132 ~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 132 AYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred hCccccCcHHHHHHHHHHHHcCC
Confidence 34469999999999999877764
No 42
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=83.78 E-value=0.88 Score=34.44 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=16.7
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||.+++||..++
T Consensus 105 ~~~~LS~Ge~~rl~la~al~ 124 (137)
T PF00005_consen 105 RASSLSGGEKQRLALARALL 124 (137)
T ss_dssp CGGGSCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 34799999999999998664
No 43
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.19 E-value=0.73 Score=42.21 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=19.9
Q ss_pred CCcccccccCCcchHHHHHHHHHHHH
Q psy12760 163 RKSWKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 163 gk~~~~l~~LSGGEKSlaaLalIfAL 188 (199)
++.-....+||||||+++|+|=-+|.
T Consensus 133 dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 133 DKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred hhhccCchhcCcchhhHHHHHHHHhc
Confidence 34444557999999999999976664
No 44
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.15 E-value=0.65 Score=41.02 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.9
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
..++|||||++++|+|=-++
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 138 RPHELSGGQRQRIAIARALI 157 (252)
T ss_pred CchhcChhHHHHHHHHHHhc
Confidence 44689999999999985443
No 45
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=82.94 E-value=0.57 Score=45.31 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+++..||||||.++.||.++.
T Consensus 435 ~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 435 KPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred CchhhcCHhHHHHHHHHHHhc
Confidence 566789999999999998874
No 46
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=82.13 E-value=0.9 Score=40.13 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+.+..|||||++++-||--||
T Consensus 135 r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 135 RQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred CcccccCcHHHHHHHHHHHhc
Confidence 567899999999999987655
No 47
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=82.09 E-value=1 Score=37.15 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|..++.
T Consensus 129 ~~~~LSgG~~qrv~la~al~~ 149 (213)
T cd03235 129 QIGELSGGQQQRVLLARALVQ 149 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999987764
No 48
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=81.46 E-value=0.82 Score=40.29 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=15.9
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
+++..||||||+ |++|++|..
T Consensus 144 ~~iglLSGGQRQ--alsL~MAtl 164 (263)
T COG1101 144 DRIGLLSGGQRQ--ALSLLMATL 164 (263)
T ss_pred ChhhhccchHHH--HHHHHHHhc
Confidence 466789999998 566677654
No 49
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.28 E-value=0.99 Score=37.26 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|-.|+.
T Consensus 136 ~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999987764
No 50
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=81.05 E-value=0.83 Score=40.30 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=15.8
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
..+||||+|+++|||=-+|
T Consensus 128 P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 128 PHQLSGGMRQRVAIARALA 146 (248)
T ss_pred ccccChHHHHHHHHHHHHh
Confidence 3689999999999986554
No 51
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.93 E-value=0.99 Score=37.82 Aligned_cols=21 Identities=43% Similarity=0.392 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.++.
T Consensus 133 ~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 133 YPAELSGGMKKRVALARALAL 153 (235)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 52
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=80.39 E-value=1.1 Score=37.01 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|-.++.
T Consensus 139 ~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 139 PSELSGGERQRVAIARALVN 158 (221)
T ss_pred hhhCCHHHHHHHHHHHHHhC
Confidence 36899999999999988764
No 53
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=80.36 E-value=1.2 Score=36.48 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.9
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+.++||..|+.
T Consensus 132 ~~~LSgG~~qrv~laral~~ 151 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAM 151 (211)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 46899999999999987763
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.23 E-value=3.1 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred ccccCCcchHHHHHHHHHHHHHHh
Q psy12760 168 SIDCLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~~~ 191 (199)
....||||||+.++++++.|...|
T Consensus 1362 ~~~~lSgGE~~~~~~~~l~a~l~~ 1385 (1486)
T PRK04863 1362 ESGALSTGEAIGTGMSILVMVVQS 1385 (1486)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHH
Confidence 357899999999999999994444
No 55
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.08 E-value=1.1 Score=36.90 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|..++.
T Consensus 128 ~~~LSgG~~qrl~la~al~~ 147 (213)
T cd03259 128 PHELSGGQQQRVALARALAR 147 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999987764
No 56
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=80.02 E-value=0.96 Score=38.67 Aligned_cols=17 Identities=53% Similarity=0.640 Sum_probs=14.4
Q ss_pred cccccCCcchHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLA 183 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLa 183 (199)
+++..||||||+++||+
T Consensus 129 k~it~lSGGE~QriAli 145 (223)
T COG4619 129 KNITELSGGEKQRIALI 145 (223)
T ss_pred chhhhccchHHHHHHHH
Confidence 45678999999999876
No 57
>KOG0062|consensus
Probab=80.01 E-value=0.89 Score=44.19 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=17.0
Q ss_pred ccccccCCcchHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALV 185 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalI 185 (199)
.+++..||||||+.+++|-+
T Consensus 477 ~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 477 LQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred hccccccCCcchhHHHHHHH
Confidence 46688999999999999854
No 58
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.70 E-value=1.3 Score=36.72 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.8
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||+.+++|..++.
T Consensus 130 ~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 130 HQLSGGMRQRVALARALAV 148 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc
Confidence 5899999999999988775
No 59
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.46 E-value=1.1 Score=37.01 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.9
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+.++||-.++.
T Consensus 138 ~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 138 PSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhhcCHHHHHHHHHHHHHcc
Confidence 35899999999999987764
No 60
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=79.46 E-value=1.2 Score=38.25 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.++||..++.
T Consensus 112 ~~~~LSgGe~qrv~iaraL~~ 132 (246)
T cd03237 112 EVPELSGGELQRVAIAACLSK 132 (246)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 61
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=79.36 E-value=1.4 Score=36.61 Aligned_cols=24 Identities=50% Similarity=0.796 Sum_probs=20.1
Q ss_pred ccccccCCcchHHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
......||||||.++++|..+++.
T Consensus 108 ~~~~~~LS~G~kqrl~la~~l~~~ 131 (197)
T cd03278 108 VQRLSLLSGGEKALTALALLFAIF 131 (197)
T ss_pred ccchhhcCHHHHHHHHHHHHHHHh
Confidence 345678999999999999988763
No 62
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.36 E-value=1.2 Score=43.38 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.9
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+..++||||||+++|+|--+|+
T Consensus 425 ryP~elSGGQrQRvaIARALa~ 446 (539)
T COG1123 425 RYPHELSGGQRQRVAIARALAL 446 (539)
T ss_pred cCchhcCcchhHHHHHHHHHhc
Confidence 3457999999999999998875
No 63
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.29 E-value=7.1 Score=33.79 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=22.7
Q ss_pred ceEEEEECCCCcccccccCCcchHHHHHHHHHHHH
Q psy12760 154 GIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 154 GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL 188 (199)
-+.+.+.+ ....+.+|+||+..+++|..+|.
T Consensus 170 ~l~~~vd~----~~~~~~lS~Gq~~~~~la~~la~ 200 (270)
T cd03242 170 DLLFFLND----KPAADFGSQGQQRTLALALKLAE 200 (270)
T ss_pred heEEEECC----EeHHHhCChHHHHHHHHHHHHHH
Confidence 45555543 22467899999999999998874
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.25 E-value=1.4 Score=36.90 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 141 ~~~~LS~G~~qrv~la~al~~ 161 (241)
T cd03256 141 RADQLSGGQQQRVAIARALMQ 161 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999987764
No 65
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=78.96 E-value=1.3 Score=36.41 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+.+++|-.++.
T Consensus 135 ~~~LS~G~~qrl~la~al~~ 154 (214)
T TIGR02673 135 PEQLSGGEQQRVAIARAIVN 154 (214)
T ss_pred hhhCCHHHHHHHHHHHHHhC
Confidence 35899999999999988764
No 66
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=78.79 E-value=1.2 Score=36.62 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 123 ~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 123 KVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred hHhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 67
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=78.30 E-value=1.2 Score=40.92 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=13.8
Q ss_pred cccCCcchHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLAL 184 (199)
Q Consensus 169 l~~LSGGEKSlaaLal 184 (199)
..+||||||+++|++=
T Consensus 131 P~~LSGGQrQRVAlaR 146 (338)
T COG3839 131 PLQLSGGQRQRVALAR 146 (338)
T ss_pred cccCChhhHHHHHHHH
Confidence 3589999999999974
No 68
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.12 E-value=1.3 Score=36.28 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 125 ~~~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 125 RVEELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred cHhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988775
No 69
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=78.06 E-value=1.9 Score=35.78 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=21.4
Q ss_pred cccccccCCcchHHHHHHHHHHHHHH
Q psy12760 165 SWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 165 ~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
..+....||||||..+++|..+|++.
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~ 128 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWE 128 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhc
Confidence 34567799999999999999988653
No 70
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=78.04 E-value=1.4 Score=36.96 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|-.++.
T Consensus 112 ~~~LSgG~~qrv~la~al~~ 131 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALSI 131 (230)
T ss_pred hhhCCHHHHHHHHHHHHHHc
Confidence 46899999999999988764
No 71
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=77.91 E-value=1.6 Score=35.81 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.++.
T Consensus 123 ~~~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 123 HPLSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred CchhCCHHHHHHHHHHHHHHh
Confidence 345899999999999987764
No 72
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.64 E-value=1.6 Score=38.14 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.|+.
T Consensus 141 ~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 141 SPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred CcccCCHHHHHHHHHHHHHHh
Confidence 446899999999999998876
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=77.59 E-value=1.5 Score=36.68 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.+++|..++.
T Consensus 140 ~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 140 PAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 74
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.52 E-value=1.5 Score=36.34 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.8
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
+..||||||.++++|-.++.
T Consensus 129 ~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 46899999999999877663
No 75
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=77.28 E-value=1.6 Score=40.87 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.2
Q ss_pred ccccccCCcchHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL 188 (199)
.+....||||||++++||-.++.
T Consensus 386 ~~~~~~LSgGq~qrv~la~al~~ 408 (491)
T PRK10982 386 RTQIGSLSGGNQQKVIIGRWLLT 408 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHhc
Confidence 34667999999999999988764
No 76
>PRK13409 putative ATPase RIL; Provisional
Probab=77.25 E-value=1.5 Score=42.63 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.3
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..||||||++++||-.++.
T Consensus 449 ~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 449 KNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred CCcccCCHHHHHHHHHHHHHhc
Confidence 3456899999999999988764
No 77
>KOG0058|consensus
Probab=77.09 E-value=1.4 Score=44.22 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
.+||||||++.|+|
T Consensus 603 ~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIA 616 (716)
T ss_pred ccccchHHHHHHHH
Confidence 48999999999997
No 78
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=76.98 E-value=1.7 Score=35.23 Aligned_cols=20 Identities=45% Similarity=0.713 Sum_probs=16.8
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|..++.
T Consensus 125 ~~~LS~G~~qrv~laral~~ 144 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVAM 144 (190)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 36899999999999987763
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=76.93 E-value=1.7 Score=36.39 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 142 ~~~~LSgG~~qrv~la~al~~ 162 (243)
T TIGR02315 142 RADQLSGGQQQRVAIARALAQ 162 (243)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 80
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=76.87 E-value=1.8 Score=35.67 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 137 ~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhc
Confidence 356899999999999988774
No 81
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=76.74 E-value=1.8 Score=36.61 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.|+.
T Consensus 141 ~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 141 SALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 82
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=76.53 E-value=1.7 Score=35.63 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|..++.
T Consensus 134 ~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 134 PAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred hhhcCHHHHHHHHHHHHHHc
Confidence 35899999999999988764
No 83
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=76.48 E-value=1.8 Score=36.30 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||..++.
T Consensus 122 ~~~~LS~G~~qrv~laral~~ 142 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLL 142 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhc
Confidence 446899999999999988764
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=76.48 E-value=1.8 Score=36.00 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|-.++.
T Consensus 139 ~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 139 ALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 46899999999999987764
No 85
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=76.43 E-value=1.4 Score=40.37 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.1
Q ss_pred cccCCcchHHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL~ 189 (199)
..+||||||+++|||=-+|..
T Consensus 135 P~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 135 PAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred chhcChHHHHHHHHHHHhhcC
Confidence 358999999999999888764
No 86
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.29 E-value=1.8 Score=37.38 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||..++.
T Consensus 142 ~~~~LSgG~~qrv~la~al~~ 162 (280)
T PRK13649 142 NPFELSGGQMRRVAIAGILAM 162 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456899999999999987765
No 87
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=76.26 E-value=1.7 Score=36.42 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|..++.
T Consensus 143 ~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 143 PSELSGGERQRVAIARALVN 162 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999987764
No 88
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=76.26 E-value=1.9 Score=36.07 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 135 ~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhh
Confidence 456899999999999988764
No 89
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=76.16 E-value=1.7 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 130 ~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 130 WPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988765
No 90
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=76.12 E-value=1.9 Score=36.98 Aligned_cols=21 Identities=43% Similarity=0.472 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 131 ~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 131 DYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346999999999999988874
No 91
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=76.10 E-value=1.1 Score=41.29 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.5
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
..++|||||++++|||=-+|
T Consensus 133 ~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 133 KPHQLSGGQQQRVALARALV 152 (352)
T ss_pred ChhhhChHHHHHHHHHHHhh
Confidence 45689999999999986554
No 92
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=76.03 E-value=1.8 Score=40.43 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.8
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||..|+.
T Consensus 131 ~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 131 RRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred CCcccCCHHHHHHHHHHHHHHc
Confidence 4567999999999999988874
No 93
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=75.94 E-value=1.8 Score=36.02 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 130 ~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 130 KASSLSGGERRRVEIARALAT 150 (232)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999987764
No 94
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.85 E-value=1.9 Score=36.45 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|..++.
T Consensus 143 ~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999988764
No 95
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=75.80 E-value=1.8 Score=37.32 Aligned_cols=21 Identities=43% Similarity=0.371 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.++||-.++.
T Consensus 140 ~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 140 MPSELSGGMARRAALARAIAL 160 (269)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 96
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=75.72 E-value=1.9 Score=36.56 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.+++|-.++-
T Consensus 145 ~~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhc
Confidence 456899999999999988753
No 97
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=75.69 E-value=1.9 Score=40.74 Aligned_cols=21 Identities=43% Similarity=0.351 Sum_probs=18.2
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||+++++|-.++.
T Consensus 165 ~~~~LSgGq~qrv~iA~al~~ 185 (520)
T TIGR03269 165 IARDLSGGEKQRVVLARQLAK 185 (520)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 457899999999999988874
No 98
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.49 E-value=2 Score=37.05 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 133 ~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 133 PIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred CchhCCHHHHHHHHHHHHHHc
Confidence 346899999999999987764
No 99
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.44 E-value=1.8 Score=35.57 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++-
T Consensus 126 ~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 126 PVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred ChhhcCHHHHHHHHHHHHHhc
Confidence 346899999999999887764
No 100
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.33 E-value=1.9 Score=35.44 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.|+.
T Consensus 127 ~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 127 KIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 336899999999999987764
No 101
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.31 E-value=2.1 Score=36.16 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||..++.
T Consensus 128 ~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 128 DVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988763
No 102
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=75.29 E-value=1.8 Score=38.54 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.5
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
+..++||||||+++++|=.+|+.
T Consensus 105 ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhC
Confidence 34479999999999999988874
No 103
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=75.19 E-value=2 Score=35.24 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|..++.
T Consensus 128 ~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 36899999999999987764
No 104
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=75.18 E-value=1.8 Score=35.70 Aligned_cols=20 Identities=40% Similarity=0.398 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|..|+.
T Consensus 131 ~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 46899999999999987764
No 105
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.14 E-value=2.1 Score=35.18 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=16.7
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||..+++|..++.
T Consensus 127 ~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 127 GELSGGERQRVALARVLVR 145 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 4899999999999988864
No 106
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=75.11 E-value=2.3 Score=35.86 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.1
Q ss_pred ccccCCcchHHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
....||||||+++.++.++|++.
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~ 145 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQE 145 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHh
Confidence 44689999999999998888653
No 107
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=75.11 E-value=2 Score=36.17 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||..++.
T Consensus 141 ~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 141 YPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred ChhhCChHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 108
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=75.07 E-value=1.7 Score=35.76 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|--++.
T Consensus 133 ~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 133 RVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred hhhhcCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 109
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=74.97 E-value=1.9 Score=40.36 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=18.9
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..||||||++++||..++.
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~ 420 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLT 420 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhh
Confidence 4567899999999999998874
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=74.86 E-value=2 Score=35.71 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++++|..++.
T Consensus 144 ~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 144 PAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999987764
No 111
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=74.86 E-value=1.9 Score=39.37 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 130 ~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 130 KPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 112
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=74.75 E-value=2 Score=40.46 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.2
Q ss_pred ccccccCCcchHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL 188 (199)
.+....||||||++++||-.|+.
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~ 426 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCC 426 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhc
Confidence 34567899999999999988764
No 113
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=74.72 E-value=1.7 Score=38.12 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.0
Q ss_pred cccccCCcchHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVF 186 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIf 186 (199)
+.--.|||||+++.|+|=-+
T Consensus 132 ~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 132 QRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred CcccCCChHHHHHHHHHHHH
Confidence 44568999999999998543
No 114
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=74.68 E-value=2 Score=36.01 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||..+++|..++.
T Consensus 139 ~~~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 139 PVKTYSSGMKARLAFAIATAL 159 (224)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999887764
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=74.65 E-value=2 Score=36.06 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 129 ~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 129 KVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 345899999999999988774
No 116
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=74.62 E-value=2.1 Score=35.37 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.++.
T Consensus 142 ~~~~LS~G~~qrv~laral~~ 162 (228)
T cd03257 142 YPHELSGGQRQRVAIARALAL 162 (228)
T ss_pred CchhcCHHHHHHHHHHHHHhc
Confidence 346899999999999877653
No 117
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=74.57 E-value=2.1 Score=38.00 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=18.8
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....||||||.+++||-.++..
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhC
Confidence 4568999999999999988753
No 118
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=74.49 E-value=2 Score=40.67 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.7
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~ 173 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLT 173 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhc
Confidence 3557999999999999988874
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=74.44 E-value=2.3 Score=36.05 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 146 ~~~~LSgGq~qrv~laral~~ 166 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999887764
No 120
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=74.35 E-value=1.8 Score=42.28 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||-.++.
T Consensus 427 ~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 427 ETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 446799999999999988764
No 121
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=74.33 E-value=2 Score=38.37 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.3
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||++++||-.++.
T Consensus 98 ~~~LSgGq~qRvalaraL~~ 117 (325)
T TIGR01187 98 PHQLSGGQQQRVALARALVF 117 (325)
T ss_pred hhhCCHHHHHHHHHHHHHHh
Confidence 46899999999999988764
No 122
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=74.32 E-value=2 Score=40.42 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.0
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..||||||++++||..|+.
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~ 422 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLL 422 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhh
Confidence 4567999999999999988874
No 123
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=74.00 E-value=2.1 Score=39.20 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++|||--++.
T Consensus 134 ~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 134 LPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 124
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=74.00 E-value=2.1 Score=38.60 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.6
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
..+||||||++++||-.++.
T Consensus 159 p~~LSgG~~QRv~iArAL~~ 178 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALIL 178 (331)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 46899999999999988875
No 125
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.99 E-value=2.3 Score=35.06 Aligned_cols=21 Identities=43% Similarity=0.406 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 128 ~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 128 YPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 126
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.84 E-value=2 Score=36.88 Aligned_cols=20 Identities=45% Similarity=0.501 Sum_probs=16.7
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
...+|||||++++|||=-||
T Consensus 143 yP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 143 YPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred CccccCchHHHHHHHHHHhc
Confidence 34699999999999997665
No 127
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=73.73 E-value=2.5 Score=34.10 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 94 ~~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 94 PFNELSGGERQRVLLARALAQ 114 (180)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 128
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.65 E-value=2.4 Score=35.20 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 136 ~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhc
Confidence 356899999999999988764
No 129
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=73.57 E-value=2.1 Score=37.67 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||..++.
T Consensus 132 ~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 132 RVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999987763
No 130
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.56 E-value=2.4 Score=35.83 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 145 ~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14272 145 PATGLSGGQQQRLCIARALAV 165 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 356899999999999987664
No 131
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=73.56 E-value=2.2 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.8
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~ 442 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALIL 442 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhC
Confidence 4567899999999999988874
No 132
>PRK10908 cell division protein FtsE; Provisional
Probab=73.51 E-value=2.4 Score=35.21 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|-.++.
T Consensus 135 ~~~LS~G~~qrv~laral~~ 154 (222)
T PRK10908 135 PIQLSGGEQQRVGIARAVVN 154 (222)
T ss_pred chhCCHHHHHHHHHHHHHHc
Confidence 36899999999999987764
No 133
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=73.50 E-value=2.3 Score=37.42 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....|||||++++.+|=.+|
T Consensus 131 R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 131 RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cchhhcCchHHHHHHHHHHHH
Confidence 345689999999999998887
No 134
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=73.50 E-value=2.2 Score=35.19 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 129 ~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 129 LAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999977753
No 135
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=73.37 E-value=2.2 Score=35.72 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 134 ~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 134 RAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred chhhCCHHHHHHHHHHHHHHh
Confidence 345899999999999988764
No 136
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=73.35 E-value=2.4 Score=34.75 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|..++.
T Consensus 133 ~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 133 PAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred ccccCHHHHHHHHHHHHHhc
Confidence 46899999999999887764
No 137
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.34 E-value=2.4 Score=37.95 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~ 193 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAI 193 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999988875
No 138
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=73.33 E-value=2.3 Score=35.44 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 128 ~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999887764
No 139
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=73.27 E-value=2.4 Score=40.07 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.4
Q ss_pred ccccccCCcchHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL 188 (199)
.+....||||||++++||..++.
T Consensus 398 ~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 398 EQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred cCccccCCcHHHHHHHHHHHHhh
Confidence 34567999999999999988764
No 140
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.23 E-value=2.5 Score=36.88 Aligned_cols=21 Identities=38% Similarity=0.300 Sum_probs=18.2
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 142 ~~~~LSgGq~qrl~laral~~ 162 (287)
T PRK13641 142 SPFELSGGQMRRVAIAGVMAY 162 (287)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456899999999999988875
No 141
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=73.22 E-value=2.2 Score=34.76 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 124 ~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 124 PAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred ChhhcCHHHHHHHHHHHHHhc
Confidence 346899999999999877664
No 142
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.07 E-value=2.3 Score=35.23 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||..+++|..++.
T Consensus 134 ~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 134 LVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 143
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.05 E-value=2.3 Score=35.72 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.++.
T Consensus 134 ~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 134 PAQLSGGQRQRVALARALAV 153 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 46899999999999987765
No 144
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=72.98 E-value=3.3 Score=34.44 Aligned_cols=23 Identities=48% Similarity=0.469 Sum_probs=18.3
Q ss_pred ccccCCcchHHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
....|||||+.++++|+.+|+..
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~ 134 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAE 134 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHH
Confidence 45689999999998887776643
No 145
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=72.96 E-value=2.6 Score=35.88 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.|+.
T Consensus 148 ~~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 148 LPTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred CCccCCHHHHHHHHHHHHHhc
Confidence 446899999999999987763
No 146
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=72.95 E-value=2.4 Score=35.68 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|-.|+.
T Consensus 139 ~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 139 PLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999987764
No 147
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=72.92 E-value=2.2 Score=40.11 Aligned_cols=23 Identities=30% Similarity=0.214 Sum_probs=19.3
Q ss_pred ccccccCCcchHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL 188 (199)
.+....||||||+++++|..++.
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHcc
Confidence 34667999999999999998763
No 148
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.87 E-value=2.5 Score=36.46 Aligned_cols=20 Identities=40% Similarity=0.448 Sum_probs=16.8
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.++.
T Consensus 158 ~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 158 PDELSGGMQQRVGLARALAV 177 (269)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 35899999999999987763
No 149
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=72.86 E-value=2.3 Score=34.86 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 122 ~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 122 PVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 150
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=72.86 E-value=2.2 Score=38.76 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||++++||--||.
T Consensus 137 ~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 137 YPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred ChhhCCHHHHHHHHHHHHHHh
Confidence 346899999999999988774
No 151
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.79 E-value=2.6 Score=35.73 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 147 ~~~~LSgG~~qrv~laral~~ 167 (254)
T PRK14273 147 NALSLSGGQQQRLCIARTLAI 167 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456899999999999887763
No 152
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=72.70 E-value=2.6 Score=34.78 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.8
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||..+++|..++.
T Consensus 127 ~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 127 EQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 4899999999999988764
No 153
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=72.64 E-value=2.5 Score=37.90 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||++++||--++.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~ 170 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIAC 170 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHh
Confidence 346899999999999988875
No 154
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.64 E-value=2.6 Score=35.67 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||.+++||-.++.
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhc
Confidence 3556899999999999988864
No 155
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=72.60 E-value=2.6 Score=37.85 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.5
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
..+||||||++++||.-++.
T Consensus 152 p~~LSgGq~QRv~iArAL~~ 171 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALML 171 (327)
T ss_pred CccCCHHHHHHHHHHHHHHc
Confidence 46899999999999988775
No 156
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=72.58 E-value=2.6 Score=34.94 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.++.
T Consensus 148 ~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhc
Confidence 56899999999999987763
No 157
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=72.55 E-value=2.2 Score=38.83 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.9
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||++++||--++.
T Consensus 132 ~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 132 PRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999987763
No 158
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.53 E-value=2.4 Score=35.32 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.|+.
T Consensus 137 ~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 137 YPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999987763
No 159
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.51 E-value=2.6 Score=35.66 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 143 ~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999987763
No 160
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=72.43 E-value=2.6 Score=35.26 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 136 ~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhc
Confidence 346899999999999988764
No 161
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=72.40 E-value=2.7 Score=35.20 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.4
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||..+++|..++.
T Consensus 128 ~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 128 GQLSGGQRQRVALARCLVR 146 (232)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 5899999999999987664
No 162
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=72.39 E-value=2.4 Score=37.27 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.2
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||+++++|.-|+-
T Consensus 121 ~~~~LSgG~~qrv~la~al~~ 141 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIH 141 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999877653
No 163
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.37 E-value=2.6 Score=36.81 Aligned_cols=21 Identities=43% Similarity=0.393 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 141 ~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 141 SPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 446899999999999988765
No 164
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=72.37 E-value=2.4 Score=36.38 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+.+++|..++.
T Consensus 126 ~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 126 IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 46899999999999988764
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=72.23 E-value=2.5 Score=36.34 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+.++||..++.
T Consensus 147 ~~~LS~G~~qrv~laral~~ 166 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALIL 166 (267)
T ss_pred chhcCHHHHHHHHHHHHHHh
Confidence 46899999999999988764
No 166
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=72.22 E-value=2.5 Score=38.51 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++|||--++.
T Consensus 134 ~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 134 VDQISGGQQQRVALARALIL 153 (351)
T ss_pred hhhCCHHHHHHHHHHHHHHc
Confidence 46899999999999987764
No 167
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.22 E-value=2.7 Score=36.69 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....||||||.+++||-.++..
T Consensus 142 ~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 142 SPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHhC
Confidence 4568999999999999888753
No 168
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=72.17 E-value=2.4 Score=38.21 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 137 ~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 137 YPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 346899999999999987764
No 169
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=72.01 E-value=2.6 Score=38.12 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||++++||-.++.
T Consensus 126 ~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 126 PGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 46899999999999987764
No 170
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.00 E-value=2.8 Score=35.94 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 147 ~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 147 SALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999988763
No 171
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.00 E-value=2.6 Score=35.96 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 151 ~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 456899999999999988765
No 172
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=71.98 E-value=2.7 Score=34.25 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=16.9
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|-.++.
T Consensus 132 ~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 132 IYELSGGEQQRVALARAILK 151 (206)
T ss_pred hhhCCHHHHHHHHHHHHHHc
Confidence 46799999999999887763
No 173
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.97 E-value=2.7 Score=36.73 Aligned_cols=21 Identities=33% Similarity=0.224 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 177 ~~~~LSgGe~qrv~LAraL~~ 197 (285)
T PRK14254 177 SGLDLSGGQQQRLCIARAIAP 197 (285)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999988763
No 174
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=71.94 E-value=2.7 Score=35.78 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.0
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||..+++|-.++.
T Consensus 144 ~~~~~LS~G~~qrv~laral~~ 165 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAV 165 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhc
Confidence 3456899999999999987764
No 175
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=71.77 E-value=2.7 Score=36.63 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 147 ~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 147 SPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred ChhhCCHHHHHHHHHHHHHHh
Confidence 456899999999999987764
No 176
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=71.67 E-value=2.9 Score=35.28 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 145 ~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14239 145 SALGLSGGQQQRVCIARVLAT 165 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999987763
No 177
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=71.66 E-value=2 Score=39.26 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=12.5
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
..||||||+.+|++
T Consensus 127 ~~LSGGEkQRVAIG 140 (352)
T COG4148 127 GTLSGGEKQRVAIG 140 (352)
T ss_pred CccCcchhhHHHHH
Confidence 46999999999986
No 178
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.65 E-value=2.8 Score=35.70 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 152 ~~~~LS~Gq~qrv~laral~~ 172 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALAT 172 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 179
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=71.56 E-value=2.6 Score=38.12 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.3
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||++++||-.++.
T Consensus 129 ~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 129 PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred hhhCCHHHHHHHHHHHHHHc
Confidence 46899999999999988764
No 180
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=71.56 E-value=2.8 Score=36.69 Aligned_cols=21 Identities=38% Similarity=0.350 Sum_probs=18.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 142 ~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 142 SPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456899999999999988875
No 181
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.53 E-value=2.5 Score=35.61 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.+++|-.++.
T Consensus 132 ~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999887663
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=71.49 E-value=2.5 Score=39.77 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.8
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||+++++|-.++.
T Consensus 391 ~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 391 QAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhh
Confidence 4567899999999999988764
No 183
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.39 E-value=2.9 Score=35.31 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||..++.
T Consensus 145 ~~~~LS~Gq~qrv~laral~~ 165 (252)
T PRK14255 145 SALSLSGGQQQRVCIARVLAV 165 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456999999999999987764
No 184
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=71.39 E-value=2.7 Score=35.52 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 150 ~~~~LS~G~~qrv~la~al~~ 170 (255)
T PRK11300 150 QAGNLAYGQQRRLEIARCMVT 170 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999987764
No 185
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.34 E-value=3 Score=35.34 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||..++.
T Consensus 144 ~~~~LS~G~~qrv~laral~~ 164 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAV 164 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988763
No 186
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=71.27 E-value=2.5 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+++|||--++.
T Consensus 142 p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 142 PHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 36899999999999987764
No 187
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.20 E-value=2.7 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.++||-.++.
T Consensus 146 ~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14267 146 YPSNLSGGQRQRLVIARALAM 166 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 188
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=71.15 E-value=2.7 Score=40.94 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.8
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 459 ~~~~~LSgGqrQRv~iAraL~~ 480 (623)
T PRK10261 459 RYPHEFSGGQRQRICIARALAL 480 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHhc
Confidence 3557999999999999988874
No 189
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=71.10 E-value=3.1 Score=34.67 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 140 ~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHh
Confidence 456899999999999988775
No 190
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=70.97 E-value=2.6 Score=38.32 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++|||--++.
T Consensus 131 ~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 131 YPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 191
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=70.93 E-value=2.1 Score=37.93 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCcccccccCCcchHHHHHHHHHHH
Q psy12760 163 RKSWKSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 163 gk~~~~l~~LSGGEKSlaaLalIfA 187 (199)
.+.++..+.|||||++++|+|=.++
T Consensus 139 ~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 139 DKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred HHHHHHhccCCcchhHHHHHHHHHh
Confidence 3567788899999999999996543
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.88 E-value=2.8 Score=35.38 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..|+.
T Consensus 143 ~~~~LS~Gq~qr~~la~al~~ 163 (250)
T PRK14262 143 PGTRLSGGQQQRLCIARALAV 163 (250)
T ss_pred ChhhcCHHHHHHHHHHHHHhC
Confidence 456899999999999988764
No 193
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=70.81 E-value=2.8 Score=35.19 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 140 ~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 140 LAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999987764
No 194
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=70.79 E-value=3.1 Score=35.82 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 160 ~~~~LSgGq~qrv~laral~~ 180 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAV 180 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456899999999999988764
No 195
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=70.71 E-value=3.2 Score=35.48 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 153 ~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 153 SGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHC
Confidence 446899999999999988764
No 196
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=70.56 E-value=2.6 Score=39.64 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 142 ~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 142 KVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 197
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=70.52 E-value=2.5 Score=41.16 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||-.++.
T Consensus 437 ~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 437 PVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred hhhhCCHHHHHHHHHHHHHhc
Confidence 345799999999999987764
No 198
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=70.51 E-value=2.9 Score=35.14 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 134 ~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 134 MGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999987753
No 199
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=70.49 E-value=3.1 Score=34.43 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 146 ~~~~LS~G~~qrl~laral~~ 166 (224)
T TIGR02324 146 PPATFSGGEQQRVNIARGFIA 166 (224)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 356899999999999987763
No 200
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=70.48 E-value=2.8 Score=38.60 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++|||--++.
T Consensus 146 ~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 146 KPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 345899999999999988775
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=70.31 E-value=2.7 Score=39.69 Aligned_cols=22 Identities=41% Similarity=0.375 Sum_probs=18.2
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 423 ~~~~~LSgGq~qrv~laral~~ 444 (520)
T TIGR03269 423 KYPDELSEGERHRVALAQVLIK 444 (520)
T ss_pred CChhhCCHHHHHHHHHHHHHhc
Confidence 3557899999999999987764
No 202
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=70.31 E-value=3.6 Score=38.95 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=18.7
Q ss_pred ceEEEEECCCCcccccccCCcchHHHHHHHHHH
Q psy12760 154 GIKYVVRPPRKSWKSIDCLSGGEKTLASLALVF 186 (199)
Q Consensus 154 GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIf 186 (199)
|++-.+...| ..||||||++.+||=.+
T Consensus 458 gldt~i~~~g------~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 458 GLDTPIGENG------VLLSGGQRQRLAIARAL 484 (571)
T ss_pred cccceecCCC------CcCCHHHHHHHHHHHHH
Confidence 5555554333 46999999999988544
No 203
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=70.27 E-value=2.9 Score=34.98 Aligned_cols=23 Identities=48% Similarity=0.878 Sum_probs=19.7
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
.....||||||+.+++|..++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~ 176 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQ 176 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHh
Confidence 35568999999999999999874
No 204
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=70.15 E-value=2.9 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||++++||--++.
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~ 178 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLC 178 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999988775
No 205
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=70.13 E-value=2.9 Score=39.61 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||..++.
T Consensus 435 ~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 435 SVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred cccccCHHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 206
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=70.12 E-value=2.8 Score=39.30 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.|+.
T Consensus 131 ~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 131 KVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred chhhCCHHHHHHHHHHHHHHh
Confidence 457899999999999988764
No 207
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=70.10 E-value=3.1 Score=36.21 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 142 ~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988874
No 208
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=70.02 E-value=3 Score=34.98 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|-.|+.
T Consensus 134 ~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 134 PSELSGGQQQRVAIARALAV 153 (240)
T ss_pred hhhcCHHHHHHHHHHHHHhc
Confidence 36899999999999988764
No 209
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=69.90 E-value=2.7 Score=39.57 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||+++++|-.|+.
T Consensus 140 ~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 140 PVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 457899999999999988764
No 210
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=69.85 E-value=3.1 Score=37.29 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+.++||--++.
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHC
Confidence 346999999999999987765
No 211
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=69.85 E-value=2.9 Score=38.14 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
-..+||||+|+++.+|.-+|+
T Consensus 150 YPhelSGGMrQRV~IAmala~ 170 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALAL 170 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhC
Confidence 336999999999999988875
No 212
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=69.82 E-value=3.4 Score=34.91 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 143 ~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 143 SALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 213
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=69.73 E-value=2.8 Score=40.09 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||-.|+.
T Consensus 160 ~~~~LSgGqkqrv~la~al~~ 180 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLE 180 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhC
Confidence 456899999999999988763
No 214
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.73 E-value=3.3 Score=34.52 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..++||-.++.
T Consensus 135 ~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 135 GLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCcCCHHHHHHHHHHHHHhc
Confidence 46899999999999987764
No 215
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=69.72 E-value=3 Score=35.79 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 117 ~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 117 PMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 356899999999999987764
No 216
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=69.72 E-value=3.1 Score=35.69 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 147 ~~~~LSgGe~qrv~laral~~ 167 (265)
T TIGR02769 147 LPRQLSGGQLQRINIARALAV 167 (265)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 446899999999999887763
No 217
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=69.63 E-value=2.9 Score=39.52 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=18.2
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||..|+.
T Consensus 137 ~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 137 SAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 456899999999999988874
No 218
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=69.59 E-value=2.5 Score=40.40 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.|||=
T Consensus 484 ~~LSGGQrQRialAR 498 (588)
T PRK11174 484 AGLSVGQAQRLALAR 498 (588)
T ss_pred CCCCHHHHHHHHHHH
Confidence 369999999999883
No 219
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=69.56 E-value=3.1 Score=33.91 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.2
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++-
T Consensus 120 ~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 120 KCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999887764
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.40 E-value=3.1 Score=35.18 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.+++|..|+.
T Consensus 146 ~~~~LS~Gq~qrv~laral~~ 166 (251)
T PRK14244 146 SAFELSGGQQQRLCIARAIAV 166 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 221
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=69.39 E-value=3.4 Score=35.17 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|..++.
T Consensus 123 ~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 123 SVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999988774
No 222
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=69.37 E-value=3.2 Score=35.18 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|..++.
T Consensus 144 ~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHc
Confidence 36899999999999987764
No 223
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.35 E-value=3.5 Score=34.89 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 139 ~~~~LS~G~~qrv~laral~~ 159 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAI 159 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 345899999999999987764
No 224
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=69.35 E-value=2.9 Score=39.89 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||-.|+.
T Consensus 158 ~~~~LSgGqkqrv~la~al~~ 178 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLS 178 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhc
Confidence 557999999999999988864
No 225
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=69.30 E-value=3.6 Score=35.46 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||..++.
T Consensus 148 ~~~~LS~Ge~qrl~laral~~ 168 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAV 168 (268)
T ss_pred CCccCChHHHHHHHHHHHHhc
Confidence 445899999999999988774
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=69.27 E-value=3.4 Score=35.64 Aligned_cols=21 Identities=43% Similarity=0.428 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||..++.
T Consensus 139 ~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 139 QIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 345799999999999987764
No 227
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=69.24 E-value=3.5 Score=35.40 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..++||-.++.
T Consensus 145 ~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 35899999999999987764
No 228
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.22 E-value=3.4 Score=32.35 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFALH 189 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL~ 189 (199)
|||||+.++++|..++..
T Consensus 81 lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 81 LSGGQRQRVALARALLLN 98 (157)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999988864
No 229
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=69.19 E-value=3.5 Score=33.97 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+.+++|-.++.
T Consensus 136 ~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhc
Confidence 446899999999999988764
No 230
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=69.08 E-value=2.9 Score=40.54 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.1
Q ss_pred ccccccCCcchHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVF 186 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIf 186 (199)
.+++..||||||..++||=.|
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHH
Confidence 467889999999999999664
No 231
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.06 E-value=3.5 Score=34.28 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=17.5
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||+.++||-.++.
T Consensus 136 ~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 136 GVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred CCcCCHHHHHHHHHHHHHhc
Confidence 46899999999999988875
No 232
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=68.94 E-value=3 Score=39.79 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 440 ~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 440 KVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred chhhCCHHHHHHHHHHHHHhh
Confidence 446899999999999987764
No 233
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.90 E-value=3.6 Score=34.69 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 142 ~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 142 HAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 446899999999999987764
No 234
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.74 E-value=3.5 Score=33.97 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 115 ~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhh
Confidence 446899999999999987765
No 235
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.69 E-value=3.6 Score=35.29 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 161 ~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred CcccCCHHHHHHHHHHHHHhC
Confidence 456899999999999988764
No 236
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=68.66 E-value=3.7 Score=34.59 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=18.5
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....||||||+.+++|-.++..
T Consensus 134 ~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 134 SAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred ccCcCCHHHHHHHHHHHHHHhC
Confidence 4468999999999999888754
No 237
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=68.58 E-value=3.1 Score=38.18 Aligned_cols=21 Identities=38% Similarity=0.349 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||--++.
T Consensus 126 ~p~~LSGGq~QRV~lARAL~~ 146 (363)
T TIGR01186 126 YPDELSGGMQQRVGLARALAA 146 (363)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 345899999999999987763
No 238
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=68.42 E-value=3.6 Score=34.99 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||..++.
T Consensus 149 ~~~~LS~G~~qrv~laral~~ 169 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAM 169 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 239
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=68.38 E-value=3.2 Score=34.97 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|..++.
T Consensus 151 ~~~LS~G~~qrl~la~al~~ 170 (236)
T cd03267 151 VRQLSLGQRMRAEIAAALLH 170 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 45799999999999988764
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=68.33 E-value=3.1 Score=38.97 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.|+.
T Consensus 138 ~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 138 PVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred chhhCCHHHHHHHHHHHHHhh
Confidence 456899999999999988775
No 241
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=68.18 E-value=3.8 Score=34.83 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|--++.
T Consensus 135 ~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 135 RLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346899999999999987765
No 242
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=68.14 E-value=3.2 Score=40.46 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.7
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..||||||++++||-.|+.
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhc
Confidence 3567999999999999988764
No 243
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=68.06 E-value=3.5 Score=34.43 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.7
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
.||||||+++++|-.++.
T Consensus 144 ~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALL 161 (243)
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 599999999999987764
No 244
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=67.94 E-value=3.1 Score=39.09 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 138 ~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 138 LVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred chhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 245
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.88 E-value=3.7 Score=33.61 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..++||-.++.
T Consensus 125 ~~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 125 CGLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred hhhcCHHHHHHHHHHHHHhc
Confidence 35799999999999988765
No 246
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=67.79 E-value=3.2 Score=38.78 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||.++++|-.++.
T Consensus 397 ~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 397 APFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred CchhhCCHHHHHHHHHHHHHhc
Confidence 4567999999999999987764
No 247
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=67.79 E-value=3.1 Score=34.67 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||..+++|..|+.
T Consensus 101 ~~~~lS~G~~qrv~la~al~~ 121 (213)
T PRK15177 101 RVSEYSVTMKTHLAFAINLLL 121 (213)
T ss_pred hHhhcCHHHHHHHHHHHHHhc
Confidence 446799999999999988764
No 248
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=67.76 E-value=3.1 Score=34.47 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 121 ~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 121 KAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred hHhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999887764
No 249
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=67.75 E-value=3.9 Score=34.92 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 149 ~~~~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQ 169 (262)
T ss_pred CccccCHHHHHHHHHHHHHhc
Confidence 345899999999999987764
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.64 E-value=3.7 Score=33.02 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=15.3
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
||||||.++++|..++.
T Consensus 101 lS~G~~qr~~la~al~~ 117 (178)
T cd03229 101 LSGGQQQRVALARALAM 117 (178)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 99999999999988764
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=67.60 E-value=3.9 Score=39.88 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
..++||||||+++.+|--+|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~ 171 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALAL 171 (539)
T ss_pred CCcccCchHHHHHHHHHHHhC
Confidence 447999999999999876664
No 252
>PLN03073 ABC transporter F family; Provisional
Probab=67.44 E-value=3.5 Score=41.18 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||..++.
T Consensus 624 ~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 624 PMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred CccccCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 253
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.39 E-value=3.7 Score=34.71 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 144 ~~~~LS~Gq~qr~~laral~~ 164 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALAV 164 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456999999999999877753
No 254
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.37 E-value=4 Score=35.38 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||..|+.
T Consensus 158 ~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 158 KGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred CcccCCHHHHHHHHHHHHHhh
Confidence 456899999999999988764
No 255
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.28 E-value=3.9 Score=35.29 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.|+.
T Consensus 151 ~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 151 SGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999887764
No 256
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=67.27 E-value=4 Score=35.44 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=17.3
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.|+.
T Consensus 142 ~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 142 PHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 46899999999999988764
No 257
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=67.26 E-value=2.9 Score=39.35 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.|+|=
T Consensus 469 ~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 469 ARLSGGERQRLALAR 483 (529)
T ss_pred CcCCHHHHHHHHHHH
Confidence 469999999999883
No 258
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.19 E-value=4 Score=34.29 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=16.3
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||..++||..++.
T Consensus 128 ~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 128 ETLSGGEQQRVAIARALVV 146 (235)
T ss_pred ccCCHHHHHHHHHHHHHHc
Confidence 5799999999999987664
No 259
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=67.08 E-value=4.1 Score=32.68 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|-.++.
T Consensus 96 ~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 96 GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 56899999999999987764
No 260
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=67.07 E-value=4.1 Score=34.93 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 140 ~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 140 SVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred CcccCChHHHHHHHHHHHHhc
Confidence 446899999999999987764
No 261
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=66.95 E-value=4.1 Score=35.21 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..++.
T Consensus 164 ~~~~LSgGe~qrv~laraL~~ 184 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLAI 184 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456899999999999988764
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=66.92 E-value=4.3 Score=32.46 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=16.8
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||.++++|-.++
T Consensus 88 ~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999987765
No 263
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=66.92 E-value=4.2 Score=34.61 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 134 ~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 134 DMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346899999999999988775
No 264
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=66.90 E-value=3.8 Score=38.13 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~ 181 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAI 181 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 335899999999999987764
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=66.88 E-value=3.5 Score=38.73 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.++.
T Consensus 137 ~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 137 PLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred chhhCCHHHHHHHHHHHHHHh
Confidence 456899999999999987764
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=66.88 E-value=3.8 Score=39.94 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.|+.
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSC 185 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhC
Confidence 3557899999999999988774
No 267
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.81 E-value=3.9 Score=32.70 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
||||||.++++|..++.
T Consensus 96 LS~G~~qrv~laral~~ 112 (173)
T cd03230 96 LSGGMKQRLALAQALLH 112 (173)
T ss_pred cCHHHHHHHHHHHHHHc
Confidence 99999999999988874
No 268
>KOG0056|consensus
Probab=66.73 E-value=2.8 Score=41.19 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=12.3
Q ss_pred cCCcchHHHHHHHH
Q psy12760 171 CLSGGEKTLASLAL 184 (199)
Q Consensus 171 ~LSGGEKSlaaLal 184 (199)
-||||||+++|+|=
T Consensus 674 kLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 674 KLSGGEKQRVAIAR 687 (790)
T ss_pred ccCCcchhhHHHHH
Confidence 49999999999973
No 269
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.70 E-value=4.2 Score=34.41 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 145 ~~~~LS~G~~qrl~laral~~ 165 (252)
T PRK14256 145 NAMELSGGQQQRLCIARTIAV 165 (252)
T ss_pred CcCcCCHHHHHHHHHHHHHhc
Confidence 456899999999999987763
No 270
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=66.64 E-value=3.2 Score=40.61 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.7
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..||||||.+++||-.|+.
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~ 166 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALIC 166 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHcc
Confidence 3567899999999999988764
No 271
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=66.63 E-value=4.1 Score=34.97 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 148 ~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 148 SGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988764
No 272
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=66.45 E-value=3.8 Score=37.28 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||--++.
T Consensus 133 ~~~~LSgGq~QRvalArAL~~ 153 (353)
T PRK10851 133 YPAQLSGGQKQRVALARALAV 153 (353)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346999999999999987753
No 273
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=66.35 E-value=3.7 Score=38.86 Aligned_cols=21 Identities=19% Similarity=0.029 Sum_probs=18.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||.+++||-.|+.
T Consensus 152 ~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhc
Confidence 467999999999999988764
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.30 E-value=4.4 Score=34.21 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|..++.
T Consensus 143 ~~~~LS~Gq~qrv~laral~~ 163 (250)
T PRK14266 143 SALGLSGGQQQRLCIARTIAV 163 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999988774
No 275
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=66.24 E-value=4.2 Score=34.59 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.++.
T Consensus 137 ~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhc
Confidence 446899999999999987764
No 276
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.23 E-value=4.2 Score=35.33 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.3
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.++.
T Consensus 138 ~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 36899999999999988765
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=66.22 E-value=3.9 Score=33.70 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=16.9
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|..++.
T Consensus 125 ~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 125 FGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred hhhcCHHHHHHHHHHHHHhc
Confidence 35899999999999887764
No 278
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.18 E-value=4.1 Score=35.33 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 135 ~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 135 PPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 345899999999999987764
No 279
>PRK13409 putative ATPase RIL; Provisional
Probab=66.10 E-value=3.7 Score=40.01 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..||||||++++||-.++.
T Consensus 208 ~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 208 RDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred CChhhCCHHHHHHHHHHHHHhc
Confidence 4567899999999999987763
No 280
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.09 E-value=4 Score=35.66 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 179 ~~~~LSgGq~qrv~LAraL~~ 199 (286)
T PRK14275 179 NALGLSGGQQQRLCVARTLAV 199 (286)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 281
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=65.91 E-value=5.9 Score=33.25 Aligned_cols=31 Identities=74% Similarity=1.104 Sum_probs=23.3
Q ss_pred ECCCCcccccccCCcchHHHHHHHHHHHHHH
Q psy12760 160 RPPRKSWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 160 ~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
..++...+....||||||.++++|..+++.+
T Consensus 116 ~L~~~~~~~~~~lS~G~~~r~~la~al~~~~ 146 (212)
T cd03274 116 QMPKKSWKNISNLSGGEKTLSSLALVFALHH 146 (212)
T ss_pred ccccccccchhhcCHHHHHHHHHHHHHHhcc
Confidence 3344444566789999999999999888753
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=65.91 E-value=4.2 Score=34.00 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 110 ~~~~LS~G~~qrv~laral~~ 130 (223)
T TIGR03771 110 PVGELSGGQRQRVLVARALAT 130 (223)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 345799999999999987664
No 283
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=65.90 E-value=4.6 Score=34.36 Aligned_cols=22 Identities=45% Similarity=0.776 Sum_probs=18.8
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....||||||+++++|..++..
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHh
Confidence 4568999999999999988763
No 284
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=65.82 E-value=4.7 Score=33.17 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 84 ~~~~LSgGq~qrl~laral~~ 104 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFS 104 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhh
Confidence 456899999999999987765
No 285
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=65.75 E-value=3.9 Score=39.15 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||+.++||..++
T Consensus 442 ~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 442 KVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred chhhCCHHHHHHHHHHHHHh
Confidence 44689999999999998775
No 286
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.75 E-value=4.6 Score=35.01 Aligned_cols=20 Identities=45% Similarity=0.537 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..++||-.++.
T Consensus 135 ~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 45899999999999987765
No 287
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.56 E-value=4.2 Score=35.22 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....|||||+.++++|-.++.
T Consensus 134 ~~~~LS~Gq~qrv~laral~~ 154 (275)
T PRK13639 134 PPHHLSGGQKKRVAIAGILAM 154 (275)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=65.55 E-value=4.4 Score=34.04 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.6
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
.||||||..++||-.++-
T Consensus 145 ~LS~G~~qrv~laral~~ 162 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVL 162 (248)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 799999999999877654
No 289
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=65.55 E-value=4.4 Score=35.58 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.4
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....|||||+++++||-.++-
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~ 186 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSK 186 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhc
Confidence 3456899999999999988775
No 290
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.36 E-value=4.6 Score=34.79 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=16.8
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||++++||-.++.
T Consensus 140 ~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 36999999999999887764
No 291
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.31 E-value=4.2 Score=33.16 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=15.8
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
.||||||.++++|-.++.
T Consensus 108 ~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred cCCHHHhHHHHHHHHHhc
Confidence 799999999999887664
No 292
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.20 E-value=4.7 Score=34.96 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 137 ~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 137 EPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999988774
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=65.18 E-value=4.9 Score=32.90 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....|||||+..+++|-.++.
T Consensus 122 ~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhh
Confidence 356899999999999988764
No 294
>KOG0055|consensus
Probab=65.12 E-value=3.5 Score=43.75 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=13.0
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
.+||||||++.|+|
T Consensus 1125 ~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIA 1138 (1228)
T ss_pred CcCCchHHHHHHHH
Confidence 58999999999997
No 295
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.04 E-value=4.3 Score=34.38 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 146 ~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14261 146 SALSLSGGQQQRLCIARTLAV 166 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999887764
No 296
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=64.99 E-value=4.2 Score=37.86 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||-.++
T Consensus 136 ~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 136 PVTSLSGGERQRVLLARALA 155 (402)
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45689999999999998776
No 297
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.94 E-value=4.6 Score=34.97 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||++++||-.++.
T Consensus 134 ~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 46899999999999987764
No 298
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=64.91 E-value=5.4 Score=33.14 Aligned_cols=23 Identities=52% Similarity=0.769 Sum_probs=19.4
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
+....||||||..+++|..+|..
T Consensus 119 ~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 119 RPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred CCccccCHHHHHHHHHHHHHHhH
Confidence 34568999999999999999854
No 299
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=64.80 E-value=4.4 Score=32.40 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.0
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
||||||.++++|-.++.
T Consensus 97 LS~G~~qrv~la~al~~ 113 (173)
T cd03246 97 LSGGQRQRLGLARALYG 113 (173)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999987764
No 300
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=64.76 E-value=3.4 Score=39.38 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.6
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..||||||++.|+|=-
T Consensus 464 ~~LSgGQrQrlaiARa 479 (567)
T COG1132 464 VNLSGGQRQRLAIARA 479 (567)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4799999999999843
No 301
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=64.40 E-value=5.3 Score=32.64 Aligned_cols=20 Identities=40% Similarity=0.227 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|-.++.
T Consensus 125 ~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 125 GINLSGGQKQRISLARAVYS 144 (204)
T ss_pred CCcCCHHHHHHHHHHHHHhc
Confidence 45799999999999988764
No 302
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=64.17 E-value=4.9 Score=33.52 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 134 ~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 134 NIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 346899999999999887764
No 303
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=64.14 E-value=4.8 Score=33.04 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=16.5
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||..+++|-.++.
T Consensus 103 ~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 5899999999999987764
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=64.11 E-value=5 Score=33.12 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 137 ~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhh
Confidence 356899999999999987764
No 305
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=64.06 E-value=5 Score=34.63 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||..++-
T Consensus 165 ~~~~LS~Gq~qrv~laral~~ 185 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAI 185 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHC
Confidence 346899999999999987763
No 306
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.57 E-value=5 Score=34.83 Aligned_cols=21 Identities=43% Similarity=0.458 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.|+.
T Consensus 160 ~~~~LSgGq~qrl~LAral~~ 180 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAV 180 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 307
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=63.36 E-value=5.1 Score=34.77 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=17.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||..++-
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~ 160 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITV 160 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhh
Confidence 446899999999999876653
No 308
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=63.27 E-value=5.1 Score=32.79 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=16.0
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
.||||||..++||-.++.
T Consensus 111 ~LS~G~~qrv~laral~~ 128 (194)
T cd03213 111 GLSGGERKRVSIALELVS 128 (194)
T ss_pred cCCHHHHHHHHHHHHHHc
Confidence 799999999999987764
No 309
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=62.88 E-value=4.7 Score=33.40 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.3
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||+.+++|-.++.
T Consensus 140 ~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 140 HNLSGGQKQRVAIARALVH 158 (220)
T ss_pred hhCCHHHHHHHHHHHHHhc
Confidence 5899999999999987653
No 310
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.79 E-value=5.3 Score=35.26 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~ 217 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAV 217 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhc
Confidence 346899999999999988774
No 311
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.70 E-value=5.3 Score=34.08 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 147 ~~~~LS~G~~qrv~laral~~ 167 (259)
T PRK14260 147 SALGLSGGQQQRLCIARALAI 167 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446899999999999987763
No 312
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=62.64 E-value=5 Score=38.21 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 479 ~~LSGGqrQRi~LAR 493 (582)
T PRK11176 479 VLLSGGQRQRIAIAR 493 (582)
T ss_pred CcCCHHHHHHHHHHH
Confidence 469999999999873
No 313
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=62.51 E-value=5.2 Score=32.95 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.4
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
||||||.++++|-.++.
T Consensus 72 LSgGq~qrv~laral~~ 88 (177)
T cd03222 72 LSGGELQRVAIAAALLR 88 (177)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988764
No 314
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=62.22 E-value=5.5 Score=33.59 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.8
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
.||||||..++||-.++.
T Consensus 151 ~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 151 GFSGGEKKRNEILQMALL 168 (252)
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 499999999999988764
No 315
>KOG0057|consensus
Probab=61.79 E-value=4.3 Score=39.81 Aligned_cols=14 Identities=64% Similarity=0.662 Sum_probs=12.2
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
..||||||++++++
T Consensus 486 ~~LSGGekQrvsla 499 (591)
T KOG0057|consen 486 LMLSGGEKQRVSLA 499 (591)
T ss_pred cccccchHHHHHHH
Confidence 46999999999886
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.58 E-value=5.3 Score=31.87 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
||||||.++++|-.++.
T Consensus 97 LS~G~~~rl~la~al~~ 113 (171)
T cd03228 97 LSGGQRQRIAIARALLR 113 (171)
T ss_pred hCHHHHHHHHHHHHHhc
Confidence 99999999999987764
No 317
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=61.35 E-value=6.1 Score=33.97 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 160 ~~~~LS~G~~qrl~laral~~ 180 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAV 180 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999877764
No 318
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=61.33 E-value=5.1 Score=32.33 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=15.1
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
||||||..+++|..++.
T Consensus 105 LS~G~~qrl~la~al~~ 121 (182)
T cd03215 105 LSGGNQQKVVLARWLAR 121 (182)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 99999999999987764
No 319
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=61.30 E-value=5.8 Score=31.60 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
+||||||..+++|-.++.
T Consensus 82 qLS~G~~qrl~laral~~ 99 (163)
T cd03216 82 QLSVGERQMVEIARALAR 99 (163)
T ss_pred ecCHHHHHHHHHHHHHhc
Confidence 399999999999987654
No 320
>COG5293 Predicted ATPase [General function prediction only]
Probab=60.96 E-value=85 Score=30.57 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=43.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH---HHHHHHHHHHHHhh
Q psy12760 77 PELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLS--------------------KRQKEFDTN---FVKIGKRVQECYQM 133 (199)
Q Consensus 77 N~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~--------------------kr~~~F~~~---f~~In~~fs~iF~~ 133 (199)
|..++++|.-+.+++-.+..+.+.+...|+.+++ .....|+.- |..+-+-|......
T Consensus 374 ~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~ 453 (591)
T COG5293 374 NRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIRE 453 (591)
T ss_pred hCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788877776666555555544443333332 223333322 33333333333333
Q ss_pred hcCCceEEEEeccCCCC-CCcceEEEEECCC
Q psy12760 134 LTFGGKADLEYKEYSDP-YAQGIKYVVRPPR 163 (199)
Q Consensus 134 L~~gG~a~L~l~~~edp-~~~GI~I~V~p~g 163 (199)
+. +-.|.|.++-+... ++.|++|...-|.
T Consensus 454 ~y-d~~G~L~~~~~kng~~tfg~eI~~~~pd 483 (591)
T COG5293 454 VY-DCYGSLRVTTNKNGHLTFGAEITDAAPD 483 (591)
T ss_pred Hh-cCCCeEEEEecCCCceeeeeeeeccCCC
Confidence 32 33445555443333 5668999876553
No 321
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=4.4 Score=38.79 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=12.4
Q ss_pred cCCcchHHHHHHHH
Q psy12760 171 CLSGGEKTLASLAL 184 (199)
Q Consensus 171 ~LSGGEKSlaaLal 184 (199)
-||||||+++|+|=
T Consensus 399 klSggekqrvaiar 412 (497)
T COG5265 399 KLSGGEKQRVAIAR 412 (497)
T ss_pred eccCchHHHHHHHH
Confidence 58999999999984
No 322
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=60.79 E-value=5.5 Score=37.81 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.6
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..||||||++.++|=.
T Consensus 475 ~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 475 VTLSGGQRQRIAIARA 490 (576)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 4699999999998854
No 323
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.63 E-value=6.2 Score=34.33 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.++.
T Consensus 141 ~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 36999999999999987765
No 324
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.59 E-value=6.2 Score=34.34 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..+++|-.++.
T Consensus 137 ~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 137 EPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 345899999999999987764
No 325
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.52 E-value=30 Score=22.61 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 83 DYAKRSKEMQAVLATLNTYCTGYEQCLS 110 (199)
Q Consensus 83 ey~e~~er~e~L~~e~~~l~~~I~~L~~ 110 (199)
.|+.++.+++.|..+.+.+...+..+..
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555444443
No 326
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.34 E-value=6.2 Score=35.51 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.8
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||-.++
T Consensus 222 ~~~~LSgGqkqRl~LARAl~ 241 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIA 241 (329)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 45689999999999987665
No 327
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=60.22 E-value=6 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||..|+.
T Consensus 140 ~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 140 PVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred CcccCCHHHHHHHHHHHHHHh
Confidence 356899999999999988775
No 328
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.05 E-value=6.4 Score=34.27 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||.+++||--++.
T Consensus 137 ~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 137 KPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred CCcccCCHHHHHHHHHHHHHHc
Confidence 3567999999999999887654
No 329
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=60.04 E-value=6.2 Score=33.19 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.2
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...|||||++.+++|..++.
T Consensus 128 ~~~lS~G~~qrl~laral~~ 147 (237)
T TIGR00968 128 PNQLSGGQRQRVALARALAV 147 (237)
T ss_pred hhhCCHHHHHHHHHHHHHhc
Confidence 35899999999999988775
No 330
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=59.21 E-value=5.1 Score=39.30 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.0
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.+||=.|
T Consensus 614 ~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 614 ANLSGGQRQRLEIARAL 630 (710)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999998443
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=58.92 E-value=5.6 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.4
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.++|=.+
T Consensus 469 ~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 469 TALSTGQQKRLALICAW 485 (555)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 68999999999998543
No 332
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=58.82 E-value=5 Score=33.90 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=13.5
Q ss_pred cccccCCcchHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLA 183 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLa 183 (199)
+....||||||+++||-
T Consensus 130 ~dP~tlSGGQrARvaL~ 146 (213)
T COG4136 130 QDPATLSGGQRARVALL 146 (213)
T ss_pred cChhhcCcchHHHHHHH
Confidence 34467999999998874
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=58.80 E-value=6.4 Score=34.04 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|..|+.
T Consensus 136 ~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 136 NIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHHh
Confidence 446899999999999998874
No 334
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.65 E-value=6.8 Score=32.78 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.7
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||..++||..++-
T Consensus 129 ~~lS~G~~qrl~laral~~ 147 (232)
T cd03300 129 SQLSGGQQQRVAIARALVN 147 (232)
T ss_pred hhCCHHHHHHHHHHHHHhc
Confidence 5899999999999988764
No 335
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.63 E-value=7.2 Score=33.52 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=16.7
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|--++.
T Consensus 140 ~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred cccCCHHHHHHHHHHHHHHc
Confidence 45899999999999877664
No 336
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=58.31 E-value=5.2 Score=39.49 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=13.5
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..||||||++.|+|=.
T Consensus 616 ~~LSGGQkQRlalARA 631 (711)
T TIGR00958 616 SQLSGGQKQRIAIARA 631 (711)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 4799999999998843
No 337
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=58.30 E-value=6.3 Score=36.53 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 161 ~~~~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 161 KPGELSGGMQQRVGLARAFAM 181 (382)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 335899999999999988874
No 338
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=57.60 E-value=6.7 Score=35.51 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||+.++||.-|+.
T Consensus 169 ~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 169 RVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 456899999999999987764
No 339
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=57.39 E-value=7.7 Score=34.13 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=17.0
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|-.++.
T Consensus 157 ~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 157 GITLSGGQRARISLARAVYK 176 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhc
Confidence 46899999999999987764
No 340
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=57.32 E-value=6.7 Score=34.73 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.2
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||+.++||--++.
T Consensus 135 ~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 135 KVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred chhhCCHHHHHHHHHHHHHhC
Confidence 446899999999999877653
No 341
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=57.00 E-value=5.7 Score=38.81 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.3
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..||||||++.++|=-
T Consensus 587 ~~LSGGQrQRialARA 602 (686)
T TIGR03797 587 GTLSGGQRQRLLIARA 602 (686)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4699999999998843
No 342
>KOG0055|consensus
Probab=56.68 E-value=5.8 Score=42.12 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=12.6
Q ss_pred cCCcchHHHHHHHH
Q psy12760 171 CLSGGEKTLASLAL 184 (199)
Q Consensus 171 ~LSGGEKSlaaLal 184 (199)
+||||||+++|+|=
T Consensus 489 qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIAR 502 (1228)
T ss_pred CCChHHHHHHHHHH
Confidence 59999999999984
No 343
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.58 E-value=10 Score=32.94 Aligned_cols=22 Identities=36% Similarity=0.270 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....|||||++.+++|..+++.
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~ 188 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILA 188 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHh
Confidence 4457999999999999876654
No 344
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.40 E-value=8.3 Score=32.99 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.4
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||..++||-.++.
T Consensus 158 ~~~~LS~G~~qrv~laral~~ 178 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALAT 178 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 346899999999999987764
No 345
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.76 E-value=19 Score=29.70 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCCCCCCccchh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 58 SKWRSPVSGSDV-TAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKR 126 (199)
Q Consensus 58 ~~lr~~~~~i~~-l~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~ 126 (199)
.-+|+.+|..|. |..+|..=..+..+|++..+.|++..+++..|-..+-+|-.+-...=++-++.++++
T Consensus 87 ~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ 156 (159)
T PF04949_consen 87 EMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKE 156 (159)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 557788888887 555776666788899999999998888877655544444333333223334444443
No 346
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=55.67 E-value=6.3 Score=39.54 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=13.9
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.|||=.+
T Consensus 608 ~~LSGGQrQrlalARaL 624 (709)
T COG2274 608 ANLSGGQRQRLALARAL 624 (709)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 35999999999998543
No 347
>KOG0054|consensus
Probab=55.52 E-value=6.1 Score=42.52 Aligned_cols=13 Identities=62% Similarity=0.721 Sum_probs=12.1
Q ss_pred cCCcchHHHHHHH
Q psy12760 171 CLSGGEKTLASLA 183 (199)
Q Consensus 171 ~LSGGEKSlaaLa 183 (199)
.||||||++++||
T Consensus 643 nLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 643 NLSGGQKQRISLA 655 (1381)
T ss_pred CCcHhHHHHHHHH
Confidence 7999999999987
No 348
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=55.38 E-value=6.5 Score=37.03 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.6
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..||||||++.++|=-
T Consensus 457 ~~LSgGq~qri~laRa 472 (529)
T TIGR02857 457 AGLSGGQAQRLALARA 472 (529)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4799999999998843
No 349
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.86 E-value=8.9 Score=32.94 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=16.8
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....|||||+..++||.-|+
T Consensus 146 ~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 44689999999999987775
No 350
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=54.53 E-value=8.1 Score=33.97 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=16.7
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||..+++|.-++
T Consensus 130 ~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 130 KIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred chhhCCHHHHHHHHHHHHHh
Confidence 35689999999999987765
No 351
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=54.22 E-value=6.8 Score=37.49 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=12.8
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.++|=
T Consensus 470 ~~LSgGq~QRialAR 484 (588)
T PRK13657 470 RQLSGGERQRLAIAR 484 (588)
T ss_pred CCCCHHHHHHHHHHH
Confidence 369999999998874
No 352
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=53.94 E-value=7.9 Score=37.19 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=15.6
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
-.++||||||+.+-+|.-+|
T Consensus 154 yPHeLSGGqRQRVMIAMALa 173 (534)
T COG4172 154 YPHELSGGQRQRVMIAMALA 173 (534)
T ss_pred CCcccCcchhhHHHHHHHHc
Confidence 34799999999988776544
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=53.85 E-value=7.2 Score=42.11 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.0
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.|||=
T Consensus 1357 ~~LSGGQkQRIaIAR 1371 (1466)
T PTZ00265 1357 KSLSGGQKQRIAIAR 1371 (1466)
T ss_pred CcCCHHHHHHHHHHH
Confidence 469999999999873
No 354
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.67 E-value=50 Score=22.73 Aligned_cols=40 Identities=5% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 88 SKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQ 128 (199)
Q Consensus 88 ~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs 128 (199)
...++.++++.+.+.+.++++++..+ .++..|+.|+..++
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk-~ll~lYE~Vs~~iN 52 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVK-DLLSLYEVVSNQIN 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCC
Confidence 33445556666666666666666663 34447777666544
No 355
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=53.22 E-value=7.7 Score=33.70 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.0
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....|||||++++|+|=-+|++
T Consensus 149 YP~~LSGGQQQR~aIARaLame 170 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAME 170 (256)
T ss_pred CccccCchHHHHHHHHHHHhcC
Confidence 4458999999999999988875
No 356
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=52.65 E-value=1.2e+02 Score=25.52 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCce---EEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHH-HHHHHHHHHH
Q psy12760 113 QKEFDTNFVKIGKRVQECYQMLTFGGK---ADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKT-LASLALVFAL 188 (199)
Q Consensus 113 ~~~F~~~f~~In~~fs~iF~~L~~gG~---a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKS-laaLalIfAL 188 (199)
..++..+...||..++.+...|-.... +.+.++- ..+.+. ....+....+..+=+|+-= -.=||+.|||
T Consensus 16 ~~~~~~~l~~In~~~~~~~~~l~~e~~y~~~~~~f~~------~~ltl~-~~~~~~~~~L~~~GSgaNwl~~Hla~fLaL 88 (193)
T PF12532_consen 16 EERLESALSKINEYMSEYAKKLDFEHSYKDSPLRFDL------KELTLV-FDRKNRPIPLREMGSGANWLAYHLALFLAL 88 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCCCcccccc------ccceEE-ecCCCCeEeHHhcCChHHHHHHHHHHHHHH
Confidence 344567889999999998888863222 3333321 234442 2333333455555444433 3468999999
Q ss_pred HHh
Q psy12760 189 HYY 191 (199)
Q Consensus 189 ~~~ 191 (199)
+++
T Consensus 89 H~~ 91 (193)
T PF12532_consen 89 HEF 91 (193)
T ss_pred HHH
Confidence 988
No 357
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=52.41 E-value=7.6 Score=37.15 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 475 ~~LSGGqrQRialAR 489 (592)
T PRK10790 475 NNLSVGQKQLLALAR 489 (592)
T ss_pred CCCCHHHHHHHHHHH
Confidence 469999999999873
No 358
>KOG4253|consensus
Probab=52.40 E-value=1.4e+02 Score=25.02 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=27.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Q psy12760 73 VRPTPELPVRDYAKRSKEMQAVLATLN------------TYCTGYEQCLSKR 112 (199)
Q Consensus 73 ~~~vN~~ai~ey~e~~er~e~L~~e~~------------~l~~~I~~L~~kr 112 (199)
+..+++...++|.+..+++.+++++.+ .+.+.|++++++.
T Consensus 35 ~s~~~nkdakk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~el 86 (175)
T KOG4253|consen 35 MSRVGNKDAKKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKEL 86 (175)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777776654 4566677776666
No 359
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=52.26 E-value=9.2 Score=37.22 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.3
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
++..|||||-+.+|+|.-++
T Consensus 452 ~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 452 PVDELSGGELQRVAIAAALS 471 (591)
T ss_pred ccccCCchhHHHHHHHHHhc
Confidence 34579999999999997664
No 360
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=51.60 E-value=11 Score=32.96 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=17.4
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
-.+||||||-.+-+|=-+|.
T Consensus 137 a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 137 AYSLSGGERRRVEIARALAA 156 (243)
T ss_pred ccccccchHHHHHHHHHHhc
Confidence 35899999999999988876
No 361
>PHA00728 hypothetical protein
Probab=51.42 E-value=38 Score=27.18 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
++--|||.|-|+.-.||=||=
T Consensus 62 TMfYLsgnqisLILtAfEfar 82 (151)
T PHA00728 62 TMFYLSGNQISLILTAFEFAR 82 (151)
T ss_pred ceEEecCCchhhHHHHHHHhh
Confidence 556799999999999998873
No 362
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.33 E-value=9.5 Score=34.53 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=16.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
..++|||||++++.++=-+|.
T Consensus 132 yP~eLSGGQQQRVGv~RALAa 152 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAA 152 (309)
T ss_pred CchhcCcchhhHHHHHHHHhc
Confidence 346999999999999866653
No 363
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=51.17 E-value=94 Score=26.62 Aligned_cols=62 Identities=6% Similarity=0.052 Sum_probs=45.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12760 73 VRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT 135 (199)
Q Consensus 73 ~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~ 135 (199)
.|.+....-++|++..+++..+++...+|.+.++.-...++.-.. +-..+...|..+|.-..
T Consensus 2 ~G~~e~T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~-~q~~i~~~l~~lY~p~~ 63 (224)
T cd07591 2 TGQVERTVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTS-SQARIAETISSFYGDAG 63 (224)
T ss_pred CCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCC
Confidence 477788888999999999999999999888888777776654333 55555566665554433
No 364
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=51.06 E-value=8.2 Score=37.80 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.1
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.++|=.|
T Consensus 600 ~~LSgGQrQRlalARal 616 (694)
T TIGR03375 600 RSLSGGQRQAVALARAL 616 (694)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 46999999999998543
No 365
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=50.66 E-value=8.5 Score=37.80 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.4
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..||||||++.+||=.
T Consensus 610 ~~LSgGQrQRialARa 625 (708)
T TIGR01193 610 SSISGGQKQRIALARA 625 (708)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4699999999998743
No 366
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=50.60 E-value=8.5 Score=36.95 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.2
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.++|=.+
T Consensus 474 ~~LSgGqrqRialARal 490 (574)
T PRK11160 474 RQLSGGEQRRLGIARAL 490 (574)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999998544
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=50.14 E-value=9.9 Score=38.08 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.6
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||.+++||-.++.
T Consensus 340 ~~~~~LSgG~k~rv~LA~aL~~ 361 (718)
T PLN03073 340 KATKTFSGGWRMRIALARALFI 361 (718)
T ss_pred CchhhCCHHHHHHHHHHHHHhc
Confidence 3567899999999999988764
No 368
>PLN03232 ABC transporter C family member; Provisional
Probab=49.97 E-value=8.1 Score=41.71 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=12.2
Q ss_pred cCCcchHHHHHHH
Q psy12760 171 CLSGGEKTLASLA 183 (199)
Q Consensus 171 ~LSGGEKSlaaLa 183 (199)
.||||||+++|||
T Consensus 740 ~LSGGQkQRIaLA 752 (1495)
T PLN03232 740 NISGGQKQRVSMA 752 (1495)
T ss_pred ccCHHHHHHHHHH
Confidence 6999999999998
No 369
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=49.92 E-value=12 Score=29.29 Aligned_cols=17 Identities=47% Similarity=0.538 Sum_probs=14.9
Q ss_pred CCcchHHHHHHHHHHHH
Q psy12760 172 LSGGEKTLASLALVFAL 188 (199)
Q Consensus 172 LSGGEKSlaaLalIfAL 188 (199)
|||||+.++++|--++.
T Consensus 71 lS~G~~~rv~laral~~ 87 (144)
T cd03221 71 LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999877754
No 370
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=49.92 E-value=12 Score=36.16 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.0
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||++.++|-.+.
T Consensus 470 ~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 470 NRLSGGERQRLAIARAIL 487 (585)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 469999999999986554
No 371
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=49.68 E-value=9.1 Score=36.34 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.0
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.++|=.+
T Consensus 453 ~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 453 ATLSGGQRQRIALARAL 469 (544)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 46999999999998543
No 372
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=49.36 E-value=12 Score=31.82 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.7
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||..+++|-.++-
T Consensus 154 ~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhc
Confidence 45899999999999887753
No 373
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=48.78 E-value=9.6 Score=37.29 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.2
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
..||||||++.+||
T Consensus 471 ~~LSgGQRQRIaLA 484 (580)
T COG4618 471 ATLSGGQRQRIALA 484 (580)
T ss_pred CCCCchHHHHHHHH
Confidence 46999999999987
No 374
>PLN03130 ABC transporter C family member; Provisional
Probab=48.51 E-value=9.1 Score=41.77 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=12.6
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
..||||||+++|||
T Consensus 739 ~~LSGGQKQRIaLA 752 (1622)
T PLN03130 739 VNISGGQKQRVSMA 752 (1622)
T ss_pred CCCCHHHHHHHHHH
Confidence 36999999999987
No 375
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=48.39 E-value=12 Score=33.19 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=17.3
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+.+..||||+|..+++|.-|+
T Consensus 132 ~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 132 KKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred cchhhcCHHHHHHHHHHHHHh
Confidence 356789999999999987654
No 376
>PF13175 AAA_15: AAA ATPase domain
Probab=47.81 E-value=1.9e+02 Score=25.52 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.6
Q ss_pred cccccccCCcchHHHHHHHHHHHHHH
Q psy12760 165 SWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 165 ~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
..-++..+|.|++.++.++++++...
T Consensus 335 ~~~~l~~~g~G~~~l~~~~~~~~~~~ 360 (415)
T PF13175_consen 335 ESIPLSQRGSGEQNLIYISLLINFLR 360 (415)
T ss_pred CcCChhhcCcchHHHHHHHHHHHHHH
Confidence 35688999999999999999887653
No 377
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=47.78 E-value=12 Score=36.73 Aligned_cols=18 Identities=50% Similarity=0.715 Sum_probs=15.5
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||+++++|-.++
T Consensus 581 ~~LSgGqkQRl~iARal~ 598 (659)
T TIGR00954 581 DVLSGGEKQRIAMARLFY 598 (659)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 479999999999987765
No 378
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=47.42 E-value=96 Score=24.41 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy12760 74 RPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR-QKEFD 117 (199)
Q Consensus 74 ~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr-~~~F~ 117 (199)
..--+.|-++|.+ +.+..|+++..+.++.+++|++.+ ++.|.
T Consensus 65 ~~sGN~AFD~YR~--~tL~RLEeEq~eF~~Fl~rLR~AKDk~EFD 107 (115)
T PF11014_consen 65 RSSGNAAFDEYRE--DTLRRLEEEQREFEDFLERLRRAKDKEEFD 107 (115)
T ss_pred CCCcchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3334578999955 788888888889999999998887 33444
No 379
>PLN03211 ABC transporter G-25; Provisional
Probab=47.17 E-value=13 Score=36.80 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=17.1
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.++++|.-++-
T Consensus 204 ~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 204 IRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred CCCcChhhhhHHHHHHHHHh
Confidence 46899999999999987764
No 380
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.11 E-value=13 Score=38.55 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.9
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....|||||+++++||-.++.
T Consensus 483 r~~~tLSGGE~QRv~LA~aL~~ 504 (924)
T TIGR00630 483 RAAGTLSGGEAQRIRLATQIGS 504 (924)
T ss_pred CCcCcCCHHHHHHHHHHHHHhh
Confidence 4667999999999999988764
No 381
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.69 E-value=14 Score=31.61 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.+++||-.++.
T Consensus 150 ~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 150 PASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 345799999999999987654
No 382
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.54 E-value=14 Score=32.70 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.5
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..|||||+++..+|=-+|+
T Consensus 148 ~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 148 LGLSGGQQQRLCIARALAV 166 (253)
T ss_pred cCCChhHHHHHHHHHHHhc
Confidence 4699999999999987775
No 383
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=46.11 E-value=13 Score=35.50 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=14.7
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||++.++|-.+.
T Consensus 450 ~~LSgGq~qRi~lARall 467 (569)
T PRK10789 450 VMLSGGQKQRISIARALL 467 (569)
T ss_pred CcCCHHHHHHHHHHHHHh
Confidence 469999999999986543
No 384
>PLN03232 ABC transporter C family member; Provisional
Probab=46.05 E-value=13 Score=40.19 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 1370 ~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232 1370 ENFSVGQRQLLSLAR 1384 (1495)
T ss_pred CCCCHHHHHHHHHHH
Confidence 469999999999874
No 385
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=45.20 E-value=14 Score=35.05 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=14.4
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.++|=-+
T Consensus 448 ~~LSgGq~qRl~lARal 464 (547)
T PRK10522 448 LKLSKGQKKRLALLLAL 464 (547)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999988654
No 386
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.72 E-value=1.5e+02 Score=27.79 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=28.2
Q ss_pred CCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 75 PTP-ELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLS 110 (199)
Q Consensus 75 ~vN-~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~ 110 (199)
.++ +...++++++.++++.+..+..+++..+..+++
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345 667788888888888888888888888777766
No 387
>KOG0063|consensus
Probab=43.63 E-value=11 Score=36.64 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=16.6
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
.+..|||||.+.+|+++.++
T Consensus 453 evq~lSggelQRval~KOGG 472 (592)
T KOG0063|consen 453 EVQGLSGGELQRVALALCLG 472 (592)
T ss_pred HhhcCCchhhHHHHHHHhcC
Confidence 44579999999999998764
No 388
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=42.84 E-value=17 Score=31.86 Aligned_cols=20 Identities=35% Similarity=0.180 Sum_probs=16.5
Q ss_pred cccCCcchHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL 188 (199)
...||||||.+++||-.++.
T Consensus 136 g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 35899999999999877653
No 389
>KOG0066|consensus
Probab=42.63 E-value=13 Score=36.39 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=14.5
Q ss_pred ccccCCcchHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALV 185 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalI 185 (199)
.+.-||||||+++|+|=+
T Consensus 701 kikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 701 KIKDLSGGQKARVALAEL 718 (807)
T ss_pred eeeecCCcchHHHHHHHH
Confidence 345699999999999854
No 390
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=42.28 E-value=14 Score=36.34 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.4
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++.++|=.+
T Consensus 592 ~~LSgGq~qri~lARal 608 (694)
T TIGR01846 592 ANLSGGQRQRIAIARAL 608 (694)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999988654
No 391
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=41.88 E-value=1.4e+02 Score=24.64 Aligned_cols=49 Identities=8% Similarity=0.236 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 79 LPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQ 128 (199)
Q Consensus 79 ~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs 128 (199)
.+-.+|+.++.++++++.+....-+....|...-+. -..-+-.|+++|.
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~-aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQ-ARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc
Confidence 455666777777777766666555544444433221 1224566777775
No 392
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=41.49 E-value=14 Score=31.67 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.1
Q ss_pred cCCcchHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALV 185 (199)
Q Consensus 171 ~LSGGEKSlaaLalI 185 (199)
.|||||++++|+|=-
T Consensus 141 hlsggqqqrvaiara 155 (242)
T COG4161 141 HLSGGQQQRVAIARA 155 (242)
T ss_pred ecccchhhhHHHHHH
Confidence 799999999999743
No 393
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=41.44 E-value=17 Score=39.42 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=13.1
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 1420 ~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLAR 1434 (1522)
T ss_pred CcCCHHHHHHHHHHH
Confidence 469999999999885
No 394
>PTZ00243 ABC transporter; Provisional
Probab=41.18 E-value=16 Score=39.84 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=13.1
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 1444 ~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMAR 1458 (1560)
T ss_pred CcCCHHHHHHHHHHH
Confidence 469999999999885
No 395
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=40.69 E-value=2.1e+02 Score=23.77 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy12760 77 PELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR----QKEFDTNFVKIGKRVQECY 131 (199)
Q Consensus 77 N~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr----~~~F~~~f~~In~~fs~iF 131 (199)
+.+..+|.++++.++..++.++..|+..+..-.+.. ++.=...+..+..+++.-+
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~ 82 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGW 82 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHh
Confidence 445677778888888888777777666554333222 1111223556666666533
No 396
>KOG0927|consensus
Probab=40.21 E-value=14 Score=36.36 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.7
Q ss_pred cccccCCcchHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVF 186 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIf 186 (199)
.++.+||+|||+++.+|++.
T Consensus 505 ~p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 505 VPMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred cchhhcccccchhHHHHHHH
Confidence 46789999999999888753
No 397
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.19 E-value=1e+02 Score=20.02 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 81 VRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 81 i~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
..+|+.++..|+.|..+.+.+...-+.|..+.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888877777766655
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=39.45 E-value=19 Score=34.75 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=18.3
Q ss_pred cccccccCCcchHHHHHHHHHHHH
Q psy12760 165 SWKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 165 ~~~~l~~LSGGEKSlaaLalIfAL 188 (199)
..+..+++|||||+..|+|=-+.|
T Consensus 420 r~RYPhEFSGGQRQRIAIARAliL 443 (534)
T COG4172 420 RNRYPHEFSGGQRQRIAIARALIL 443 (534)
T ss_pred hhcCCcccCcchhhHHHHHHHHhc
Confidence 334557999999999999865543
No 399
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.30 E-value=1.9e+02 Score=22.39 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy12760 94 VLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGG 138 (199)
Q Consensus 94 L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG 138 (199)
+.+..+.+...|+.++++. ..+...+.....++..++....++|
T Consensus 76 l~~r~E~ie~~ik~lekq~-~~l~~~l~e~q~~l~~ll~~~~~~~ 119 (121)
T PRK09343 76 LKERKELLELRSRTLEKQE-KKLREKLKELQAKINEMLSKYYPQG 119 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344444455555555544 3445566777777777777777544
No 400
>KOG0064|consensus
Probab=38.13 E-value=19 Score=35.75 Aligned_cols=16 Identities=50% Similarity=0.735 Sum_probs=13.9
Q ss_pred cCCcchHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVF 186 (199)
Q Consensus 171 ~LSGGEKSlaaLalIf 186 (199)
.||||||++.++|=+|
T Consensus 612 ~LsgGekQR~~mARm~ 627 (728)
T KOG0064|consen 612 VLSGGEKQRMGMARMF 627 (728)
T ss_pred hccchHHHHHHHHHHH
Confidence 5999999999998765
No 401
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=37.98 E-value=18 Score=39.21 Aligned_cols=17 Identities=47% Similarity=0.474 Sum_probs=14.3
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||++++||=-+
T Consensus 759 ~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999998543
No 402
>KOG2483|consensus
Probab=37.70 E-value=23 Score=30.96 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=45.1
Q ss_pred hhhhHHHHHhhhhhhhccccchhhHHHHHhHhhhccCCcccccCCCCCCCCC--CCCCCCCCccchhhhhcCCCCchhHH
Q psy12760 5 REHHEEIVEKKRRAIVTRPCSITSWMAVLSISDILSNSSIHTTPRSANTMAP--ASKWRSPVSGSDVTAAVRPTPELPVR 82 (199)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p--~~~lr~~~~~i~~l~~~~~vN~~ai~ 82 (199)
|+||-+. ||+|||=+-.||.. ....+|+..+...- .+.|+..++-|.+++....
T Consensus 60 R~~HN~L-Ek~RRahlk~~~~~----------------Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~------- 115 (232)
T KOG2483|consen 60 RAHHNAL-EKRRRAHLKDCFES----------------LKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA------- 115 (232)
T ss_pred hhhhhhh-hHHHHHHHHHHHHH----------------HHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH-------
Confidence 6788775 69999999998853 34456776544433 3555555555555544331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 83 DYAKRSKEMQAVLATLNTYCTGYEQCL 109 (199)
Q Consensus 83 ey~e~~er~e~L~~e~~~l~~~I~~L~ 109 (199)
+-...+++|..+...++..++++.
T Consensus 116 ---~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 116 ---TQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112344455555555555555544
No 403
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.05 E-value=2.5e+02 Score=25.02 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTG 104 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~ 104 (199)
+.|++++++++++.+++..+.+.
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~e 157 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKE 157 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666555555554444333
No 404
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=36.81 E-value=21 Score=37.06 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.5
Q ss_pred cccccCCcchHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
+.+..||||||++++||-.++..
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC
Confidence 46678999999999999888753
No 405
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=36.59 E-value=23 Score=34.53 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.2
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||.++++|.-++
T Consensus 164 ~~~LSgGqrkRvsia~aL~ 182 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELL 182 (617)
T ss_pred CCCcCcchhhHHHHHHHHH
Confidence 3579999999999998765
No 406
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.11 E-value=2.1e+02 Score=22.33 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc
Q psy12760 94 VLATLNTYCTGYEQCLSKRQKEFDT---NFVKIGKRVQECYQMLT 135 (199)
Q Consensus 94 L~~e~~~l~~~I~~L~~kr~~~F~~---~f~~In~~fs~iF~~L~ 135 (199)
++.++++.+..+++-+++..+.|.. .++++....+.+|..|.
T Consensus 30 l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla 74 (128)
T PF06295_consen 30 LEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLA 74 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443 34444444445554443
No 407
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=35.92 E-value=1.3e+02 Score=19.99 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=29.6
Q ss_pred CCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q psy12760 76 TPELPVRDYA-KRSKEMQAVLATLNTYCTGYEQCLSKR----QKEFDTNFVKIGKRVQECYQML 134 (199)
Q Consensus 76 vN~~ai~ey~-e~~er~e~L~~e~~~l~~~I~~L~~kr----~~~F~~~f~~In~~fs~iF~~L 134 (199)
+|+..+.... .+....+.+......+...+..+...| ...|...+.++...|..+-..|
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L 67 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEAL 67 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 223344455555666666666664433 4455555555555555444433
No 408
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.81 E-value=2.4e+02 Score=27.75 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 79 LPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKR 126 (199)
Q Consensus 79 ~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~ 126 (199)
...+..+++++++++++++++++++.++++.+.+........+.+...
T Consensus 212 ~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 259 (646)
T PRK05771 212 TPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIE 259 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888899999999999988888887766666555555544
No 409
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=35.33 E-value=23 Score=38.38 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=12.5
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 1352 ~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLAR 1366 (1490)
T ss_pred CcCCHHHHHHHHHHH
Confidence 369999999988874
No 410
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=35.02 E-value=31 Score=27.31 Aligned_cols=21 Identities=57% Similarity=0.716 Sum_probs=17.9
Q ss_pred ccCCcchHHHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL~~ 190 (199)
..|||||+.+++++.+++...
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~ 96 (162)
T cd03227 76 LQLSGGEKELSALALILALAS 96 (162)
T ss_pred eeccccHHHHHHHHHHHHhcC
Confidence 359999999999999998643
No 411
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=35.01 E-value=21 Score=38.68 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=16.0
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||=-+.
T Consensus 576 ~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAII 595 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHh
Confidence 34689999999999986553
No 412
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=34.87 E-value=24 Score=38.01 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||.++++|-.++.
T Consensus 206 ~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred cCCCCCcccchHHHHHHHHHh
Confidence 356899999999999987764
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=34.45 E-value=26 Score=36.39 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.4
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++-
T Consensus 826 ~~~~tLSgGEkQRl~LAraL~~ 847 (943)
T PRK00349 826 QPATTLSGGEAQRVKLAKELSK 847 (943)
T ss_pred CCcccCCHHHHHHHHHHHHHhc
Confidence 3556899999999999988864
No 414
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.13 E-value=2.8e+02 Score=23.93 Aligned_cols=42 Identities=5% Similarity=-0.092 Sum_probs=28.4
Q ss_pred CCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 74 RPTPELP-VRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKE 115 (199)
Q Consensus 74 ~~vN~~a-i~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~ 115 (199)
...+... ...|+.+..+|+..+...+.+.+.|..++.....-
T Consensus 55 ~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~AL 97 (201)
T PF11172_consen 55 VNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADAL 97 (201)
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 44888888888888877777777777776655443
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.07 E-value=27 Score=36.27 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..|||||++.++||-.|+.
T Consensus 824 ~~~~tLSgGe~QRl~LA~aL~~ 845 (924)
T TIGR00630 824 QPATTLSGGEAQRIKLAKELSK 845 (924)
T ss_pred CccccCCHHHHHHHHHHHHHhh
Confidence 4567899999999999988874
No 416
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=33.84 E-value=28 Score=32.52 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+..++||||.|+++.||=-||
T Consensus 160 ~yp~eLSGGMqQRVGLARAla 180 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALA 180 (386)
T ss_pred cCcccccchHHHHHHHHHHHc
Confidence 455799999999999997665
No 417
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=33.80 E-value=22 Score=34.87 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.5
Q ss_pred ccCCcchHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALV 185 (199)
Q Consensus 170 ~~LSGGEKSlaaLalI 185 (199)
..|||||++++|+|=-
T Consensus 455 ~~LSgGQ~QRlaLARA 470 (559)
T COG4988 455 AGLSGGQAQRLALARA 470 (559)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4799999999999843
No 418
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=33.74 E-value=1e+02 Score=20.43 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 87 RSKEMQAVLATLNTYCTGYEQCLSKRQK 114 (199)
Q Consensus 87 ~~er~e~L~~e~~~l~~~I~~L~~kr~~ 114 (199)
+.+.++.++..++++...|++|.++|..
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~ 37 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQR 37 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 3456677777777778888888877654
No 419
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.65 E-value=26 Score=30.79 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=17.7
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+-+||||+|+.+.+|=-+|.
T Consensus 128 ~~i~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 128 KYIWQLSGGMRQRVGIARALAV 149 (259)
T ss_pred cceEeecchHHHHHHHHHHhhc
Confidence 3456899999999999876664
No 420
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.42 E-value=30 Score=37.23 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=16.5
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||.+++...+||
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a 1263 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFA 1263 (1353)
T ss_pred cccCCCchHHHHHHHHHHHH
Confidence 45789999999998766666
No 421
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=33.41 E-value=31 Score=27.30 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.8
Q ss_pred cCCcchHHHHHHH
Q psy12760 171 CLSGGEKTLASLA 183 (199)
Q Consensus 171 ~LSGGEKSlaaLa 183 (199)
++|||.|+|+..+
T Consensus 96 ~iaGGRK~Ms~~~ 108 (124)
T TIGR03642 96 NISGGRKIMTIIL 108 (124)
T ss_pred EecCCHHHHHHHH
Confidence 7999999987653
No 422
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=28 Score=34.24 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.2
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
..||||||.+.|||=++
T Consensus 473 ~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 473 RRLSGGERRRLALARAL 489 (573)
T ss_pred CcCCchHHHHHHHHHHH
Confidence 47999999999998543
No 423
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=33.36 E-value=1.9e+02 Score=23.23 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q psy12760 90 EMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKA 140 (199)
Q Consensus 90 r~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a 140 (199)
+..+++..+.+|..++++++++.+. +++++..-.+. |..+...|.|
T Consensus 71 ~~~e~q~kK~KLl~mL~eVd~RY~q----Y~~Qmq~Vvss-Fe~vaG~gaA 116 (140)
T PF07526_consen 71 ERQELQRKKAKLLSMLDEVDRRYRQ----YYDQMQAVVSS-FEAVAGLGAA 116 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHhcCCcc
Confidence 3344555566667777777765544 55555555543 5555544554
No 424
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=33.24 E-value=2.7e+02 Score=23.21 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQML 134 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L 134 (199)
++|++...++..+......|.+..+.....+.. ....+..+...|..+|.-.
T Consensus 2 ~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~-l~~~~~~~~~~~~~ly~p~ 53 (216)
T cd07599 2 EQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRS-ILTHQIAFAKEFAELYDPI 53 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCc
Confidence 467888888888888888888777777777655 3346666777777766633
No 425
>PLN03130 ABC transporter C family member; Provisional
Probab=33.18 E-value=22 Score=38.89 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.9
Q ss_pred ccCCcchHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLAL 184 (199)
Q Consensus 170 ~~LSGGEKSlaaLal 184 (199)
..||||||++.+||=
T Consensus 1373 ~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130 1373 ENFSVGQRQLLSLAR 1387 (1622)
T ss_pred CCCCHHHHHHHHHHH
Confidence 379999999999874
No 426
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.62 E-value=1.7e+02 Score=20.14 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 92 QAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQ 128 (199)
Q Consensus 92 e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs 128 (199)
++++.+..++...+..++++-. .+....+.+++++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~-~i~~~ve~i~envk 38 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENE-EISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444444444444332 23335566666665
No 427
>PF07673 DUF1602: Protein of unknown function (DUF1602); InterPro: IPR011633 These proteins have no known function.
Probab=32.56 E-value=16 Score=23.37 Aligned_cols=11 Identities=64% Similarity=0.863 Sum_probs=9.3
Q ss_pred hhhhhhccccc
Q psy12760 15 KRRAIVTRPCS 25 (199)
Q Consensus 15 ~~~~~~~~~~~ 25 (199)
+-|||-||||+
T Consensus 13 ~arA~atrC~~ 23 (39)
T PF07673_consen 13 SARAIATRCCS 23 (39)
T ss_pred HHHHHHHHhcC
Confidence 45899999996
No 428
>PRK14127 cell division protein GpsB; Provisional
Probab=32.56 E-value=1.3e+02 Score=23.33 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=18.1
Q ss_pred CCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 75 PTPELPVRDYA-KRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 75 ~vN~~ai~ey~-e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
.-++.-+++|. ++-+.|+.+.++...+++.+..++++.
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQV 60 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455553 333455555555555555555444433
No 429
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.68 E-value=1.7e+02 Score=19.91 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQ 113 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~ 113 (199)
..+..+..++.+++++.+.+++..++++++..
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666655555555555443
No 430
>PHA03041 virion core protein; Provisional
Probab=31.54 E-value=2.2e+02 Score=23.38 Aligned_cols=47 Identities=4% Similarity=0.129 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 81 VRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRV 127 (199)
Q Consensus 81 i~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~f 127 (199)
..||+..+.+--.|+.+-++|-+-|.-.+..-..+++...+.+.++|
T Consensus 99 ~kE~esIKdeT~sLQ~es~~LV~DIs~AkdtTfdAiNaiM~dL~kkf 145 (153)
T PHA03041 99 IKELESIKDETSSLQNESDSLVDDISTAKDTTFDAINAIMKDLKKKF 145 (153)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHh
Confidence 44555555555555555555555554444443444444444444444
No 431
>PTZ00243 ABC transporter; Provisional
Probab=31.52 E-value=32 Score=37.56 Aligned_cols=19 Identities=42% Similarity=0.317 Sum_probs=15.8
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||++++||--+.
T Consensus 780 g~~LSGGQkqRvaLARAl~ 798 (1560)
T PTZ00243 780 GVNLSGGQKARVSLARAVY 798 (1560)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4579999999999987654
No 432
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=31.35 E-value=3.1e+02 Score=22.91 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQ 128 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs 128 (199)
.+.||+..+.+.-.|..+.+.|..-|...++.-..+.....+.+.+.|+
T Consensus 112 IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~fq 160 (166)
T PF06193_consen 112 IIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKKFQ 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667778888888888888888877777666666666666666666654
No 433
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=30.92 E-value=28 Score=39.51 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfAL 188 (199)
.+....||||||.++++|--|+.
T Consensus 1056 ~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1056 NEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred cCChhhCCHHHHHHHHHHHHHHc
Confidence 34567899999999999987764
No 434
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=30.79 E-value=30 Score=33.79 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=17.0
Q ss_pred cccccCCcchHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVF 186 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIf 186 (199)
+.++.|||||-+.+|+|--+
T Consensus 209 r~v~~LSGGELQr~aIaa~l 228 (591)
T COG1245 209 RDVSELSGGELQRVAIAAAL 228 (591)
T ss_pred hhhhhcCchHHHHHHHHHHH
Confidence 57789999999999998654
No 435
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.69 E-value=1.9e+02 Score=21.07 Aligned_cols=33 Identities=0% Similarity=0.039 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
|.++....-++++.|+.+++.+.+.|+++-.+.
T Consensus 2 a~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEA 34 (74)
T PF10073_consen 2 AAEQLRQFIERIERLEEEKKAISDDIKDVYAEA 34 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888877766666654443
No 436
>KOG3856|consensus
Probab=30.69 E-value=1.2e+02 Score=24.34 Aligned_cols=37 Identities=5% Similarity=0.057 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 78 ELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQK 114 (199)
Q Consensus 78 ~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~ 114 (199)
...+..|+.++.++.++-+.+..+.+.+..|+++...
T Consensus 6 ~~~~~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~ 42 (135)
T KOG3856|consen 6 TDELKSYEDTKAELAELIKKRQELEETLANLERQIYA 42 (135)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999998888888888887754
No 437
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.15 E-value=3.7e+02 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhcHhhh
Q psy12760 180 ASLALVFALHYYWLWLQ 196 (199)
Q Consensus 180 aaLalIfAL~~~~~~~~ 196 (199)
+-.||+..++.+.-++.
T Consensus 241 am~~~L~~~~q~~~~~~ 257 (314)
T PF04111_consen 241 AMVAFLDCLQQLAEFVE 257 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777777776664
No 438
>PRK13694 hypothetical protein; Provisional
Probab=29.78 E-value=2e+02 Score=21.37 Aligned_cols=35 Identities=3% Similarity=0.019 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 78 ELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 78 ~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
..+.++....-+|++.|+.+++.+.+.|+++-.+.
T Consensus 8 ~va~~~Lr~fIERIERLEeEkk~i~~dikdVyaEA 42 (83)
T PRK13694 8 VVAKEQLRAFIERIERLEEEKKTISDDIKDVYAEA 42 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888999999999888777777665444
No 439
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=29.33 E-value=36 Score=36.90 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.2
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||++++||--+.
T Consensus 547 ~~LSgGqkqRi~lARAl~ 564 (1490)
T TIGR01271 547 ITLSGGQRARISLARAVY 564 (1490)
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 579999999999986554
No 440
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=29.19 E-value=3.4e+02 Score=26.55 Aligned_cols=42 Identities=10% Similarity=-0.060 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCce
Q psy12760 98 LNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139 (199)
Q Consensus 98 ~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~ 139 (199)
...+...++.|+++..+....-.+..-++|..+-..|+|+|.
T Consensus 461 ~~~~~~ql~~Le~k~~~a~~rk~~~~l~q~~~l~~~L~P~g~ 502 (542)
T PF10079_consen 461 ESKILKQLDYLEKKLLKAEKRKHETALRQLDRLENSLFPNGS 502 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCC
Confidence 345666788888888888888888888888888889998875
No 441
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=29.11 E-value=2.5e+02 Score=21.01 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=22.1
Q ss_pred hhhHHHHHhhhhhhhccccchhhHHHHH
Q psy12760 6 EHHEEIVEKKRRAIVTRPCSITSWMAVL 33 (199)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (199)
+.|.++..+.|.++|.+.|..-.|+..|
T Consensus 3 e~hr~~Lr~~R~~Lv~dl~~~~~v~~~L 30 (94)
T cd08327 3 PKHKQLLRSQRLELSAELLVDGLVIQYL 30 (94)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 6789999999999998877665566643
No 442
>KOG0060|consensus
Probab=28.98 E-value=32 Score=34.32 Aligned_cols=16 Identities=38% Similarity=0.521 Sum_probs=13.7
Q ss_pred cCCcchHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVF 186 (199)
Q Consensus 171 ~LSGGEKSlaaLalIf 186 (199)
.|||||+++.|+|=+|
T Consensus 570 vLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 570 VLSPGEQQRLAFARLF 585 (659)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5999999999988765
No 443
>smart00574 POX domain associated with HOX domains.
Probab=27.12 E-value=2.9e+02 Score=22.52 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q psy12760 92 QAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKA 140 (199)
Q Consensus 92 e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a 140 (199)
.+++..+.+|..++++++++.+. +++++..-.+. |..+...|.|
T Consensus 73 ~e~q~kk~kLl~mL~eVd~RY~q----Y~~qmq~v~ss-Fe~vaG~g~a 116 (140)
T smart00574 73 QELQRKKAKLLSMLEEVDRRYKH----YYEQMQTVVSS-FDQAAGLGAA 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHhcCCch
Confidence 34455555666777777655433 45555444443 4445544443
No 444
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=27.10 E-value=1.3e+02 Score=31.46 Aligned_cols=61 Identities=26% Similarity=0.202 Sum_probs=34.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchH
Q psy12760 100 TYCTGYEQCL--SKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEK 177 (199)
Q Consensus 100 ~l~~~I~~L~--~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEK 177 (199)
+..+.++.++ .+....-...++.|.+.+.. |..-|=.+|.|+ +....|||||-
T Consensus 433 ~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~f----L~~VGL~YLtL~---------------------R~a~TLSGGEa 487 (935)
T COG0178 433 DALEFFENLKLSEKEKKIAEPILKEIKERLGF----LVDVGLGYLTLS---------------------RSAGTLSGGEA 487 (935)
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH----HHHcCcCccccc---------------------ccCCCcChhHH
Confidence 4444555554 33334445556666666654 222233344432 23458999999
Q ss_pred HHHHHHHH
Q psy12760 178 TLASLALV 185 (199)
Q Consensus 178 SlaaLalI 185 (199)
++..||=-
T Consensus 488 QRIRLAtq 495 (935)
T COG0178 488 QRIRLATQ 495 (935)
T ss_pred HHHHHHHH
Confidence 99988743
No 445
>PRK12765 flagellar capping protein; Provisional
Probab=26.52 E-value=2.9e+02 Score=27.28 Aligned_cols=46 Identities=4% Similarity=0.067 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy12760 85 AKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFD---TNFVKIGKRVQEC 130 (199)
Q Consensus 85 ~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~---~~f~~In~~fs~i 130 (199)
+-+.++++.|.++++.+.+.|+...++++.+|. ..+.+++..++.+
T Consensus 535 ~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l 583 (595)
T PRK12765 535 ESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQFSTL 583 (595)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345678888889999999999999888887776 4455555555433
No 446
>PHA01750 hypothetical protein
Probab=26.46 E-value=1.9e+02 Score=20.83 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy12760 99 NTYCTGYEQCL 109 (199)
Q Consensus 99 ~~l~~~I~~L~ 109 (199)
+.+...|++++
T Consensus 45 dNL~~ei~~~k 55 (75)
T PHA01750 45 DNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 447
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.42 E-value=2.6e+02 Score=20.82 Aligned_cols=32 Identities=3% Similarity=0.042 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 79 LPVRDYAKRSKEMQAVLATLNTYCTGYEQCLS 110 (199)
Q Consensus 79 ~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~ 110 (199)
-|..|....-++++.|+.+++.|.+.|+++-.
T Consensus 11 va~~QLrafIerIERlEeEk~~i~~dikdvy~ 42 (85)
T COG3750 11 VAAGQLRAFIERIERLEEEKKTIADDIKDVYA 42 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777888888877766665555533
No 448
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.34 E-value=23 Score=30.54 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.2
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..+||||++.+.+|=-|.
T Consensus 151 aTFSGGEqQRVNIaRgfi 168 (235)
T COG4778 151 ATFSGGEQQRVNIARGFI 168 (235)
T ss_pred cccCCchheehhhhhhhh
Confidence 579999999999986654
No 449
>PLN03140 ABC transporter G family member; Provisional
Probab=25.97 E-value=44 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=16.5
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||.++++|--++.
T Consensus 1018 ~~LSgGerkRvsIa~aL~~ 1036 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVA 1036 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 5799999999999987764
No 450
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.87 E-value=2.6e+02 Score=19.91 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy12760 79 LPVRDYAKRSKEMQAVLAT 97 (199)
Q Consensus 79 ~ai~ey~e~~er~e~L~~e 97 (199)
.|++.+..++.+.++|+.+
T Consensus 15 ~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 451
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=24.76 E-value=49 Score=32.49 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.5
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..|||||+..++||--|+.
T Consensus 143 ~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 143 SQLSGGQQQRVSIARALMN 161 (648)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 4899999999999987764
No 452
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=24.61 E-value=45 Score=33.11 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=13.5
Q ss_pred cCCcchHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVF 186 (199)
Q Consensus 171 ~LSGGEKSlaaLalIf 186 (199)
.||||||+++|+|=++
T Consensus 515 vLS~GEqQRlafARil 530 (604)
T COG4178 515 VLSGGEQQRLAFARLL 530 (604)
T ss_pred hcChhHHHHHHHHHHH
Confidence 4999999999998553
No 453
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=24.51 E-value=57 Score=28.20 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.7
Q ss_pred cCCcchHHHHHHHH
Q psy12760 171 CLSGGEKTLASLAL 184 (199)
Q Consensus 171 ~LSGGEKSlaaLal 184 (199)
++|||.|+|+..+-
T Consensus 124 sIAGGRKtMg~~~g 137 (209)
T TIGR02584 124 SIAGGRKTMGFYLG 137 (209)
T ss_pred EecCcHHHHHHHHH
Confidence 79999999987653
No 454
>KOG4010|consensus
Probab=24.00 E-value=3.1e+02 Score=23.58 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcce
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTYCTGYEQCLS----KRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGI 155 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~----kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI 155 (199)
..+|-++++.++..+++++..|+..+..-.+ -+++-=...|..+..+++.-++.+. ...++......--.|...+
T Consensus 42 Se~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q-~st~y~kt~~~~g~~~~~v 120 (208)
T KOG4010|consen 42 SEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQ-ASTAYVKTSQSVGTFTKTV 120 (208)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhh-hHHHHHHhhhhhcccccee
Confidence 3555566666666666666666554432211 1122223467777777776555443 1222322211111122222
Q ss_pred EEEEECCCCcccccccCCcchHHHHHHHHHH
Q psy12760 156 KYVVRPPRKSWKSIDCLSGGEKTLASLALVF 186 (199)
Q Consensus 156 ~I~V~p~gk~~~~l~~LSGGEKSlaaLalIf 186 (199)
.+ .| .++.+ .=+-|||+-++++-+=
T Consensus 121 y~--~~---~tqet-lSqagQKtsaa~ssvg 145 (208)
T KOG4010|consen 121 YE--AP---LTQET-LSQAGQKTSAAFSSVG 145 (208)
T ss_pred ee--cc---cchhh-HHhhhHHHHHHHHHHh
Confidence 22 12 12222 1278999988887653
No 455
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=23.39 E-value=57 Score=28.28 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.7
Q ss_pred cCCcchHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALV 185 (199)
Q Consensus 171 ~LSGGEKSlaaLalI 185 (199)
++|||.|+|+..+..
T Consensus 118 sIAGGRKtMs~~~~~ 132 (224)
T PF09623_consen 118 SIAGGRKTMSFYAGY 132 (224)
T ss_pred EecCChHHHHHHHHH
Confidence 799999999877655
No 456
>PHA02109 hypothetical protein
Probab=23.35 E-value=2.6e+02 Score=23.95 Aligned_cols=58 Identities=5% Similarity=0.042 Sum_probs=30.7
Q ss_pred CCCCCccchhhhhcCCCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 60 WRSPVSGSDVTAAVRPTPEL-----PVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFD 117 (199)
Q Consensus 60 lr~~~~~i~~l~~~~~vN~~-----ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~ 117 (199)
+--.-++|+-++.--.+.++ .++|--++.-+++.|..+...++..|..+++..+..+.
T Consensus 166 ~~AsTE~ID~~~~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LS 228 (233)
T PHA02109 166 IHASTERIDQVERSHTGENLEGLTDKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLS 228 (233)
T ss_pred ccccHHHHHHHHhccchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556555543333222 34455555556666666666666666666655555443
No 457
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.20 E-value=3.4e+02 Score=20.55 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
-.|.++++++++++.+.++++..-+.|+++.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444443
No 458
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.18 E-value=3.4e+02 Score=23.85 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=33.5
Q ss_pred HhHhhhccCCcccccC-CCCCCCCCCCCCCCCCccchhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 33 LSISDILSNSSIHTTP-RSANTMAPASKWRSPVSGSDVTAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQ 107 (199)
Q Consensus 33 ~~~~~~~~~~~~~~~p-~~~~~~~p~~~lr~~~~~i~~l~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~ 107 (199)
-|.+|+.+|..-.++- ++-++--|-+...+.+.-- .+..+..-|...+....+..++.+..+++.++|...+++
T Consensus 8 ~~~~~~k~n~~~~n~q~~skstgt~s~~~q~~l~ne-e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 8 NSMEEEKNNKETNNTQTNSKSTGTQSQKTQMSLENE-EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred hhhHHHhccccccchhhhhhccCCCcHHHHHHHhHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888887433332 3333333333332221100 112233334445566666666555555555544443333
No 459
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=22.64 E-value=1.3e+02 Score=21.47 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 81 VRDYAKRSKEMQAVLATLNTYCTGY 105 (199)
Q Consensus 81 i~ey~e~~er~e~L~~e~~~l~~~I 105 (199)
-++|.++..++++++.+.+.....+
T Consensus 35 seeY~eL~~ri~~lr~~ld~~~~~~ 59 (71)
T PF08663_consen 35 SEEYQELEDRIEELRAELDDTLDEF 59 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777766665544433
No 460
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.55 E-value=3.3e+02 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=16.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy12760 73 VRPTPELPVRDYAKRSKEMQAVLATLN 99 (199)
Q Consensus 73 ~~~vN~~ai~ey~e~~er~e~L~~e~~ 99 (199)
+..+|..+...|.++.+....+....+
T Consensus 26 Le~mN~~~~~kY~~~~~~~~~l~~~~~ 52 (99)
T PF10046_consen 26 LENMNKATSLKYKKMKDIAAGLEKNLE 52 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777766655555444443
No 461
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.52 E-value=5.6e+02 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy12760 113 QKEFDTNFVKIGKRVQECYQMLT 135 (199)
Q Consensus 113 ~~~F~~~f~~In~~fs~iF~~L~ 135 (199)
++.|++=|+++...++..|..-+
T Consensus 220 RPAfmdEyEklE~EL~~lY~~Y~ 242 (267)
T PF10234_consen 220 RPAFMDEYEKLEEELQKLYEIYV 242 (267)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988887776543
No 462
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=22.12 E-value=53 Score=36.68 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.4
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+.+..|||||+++++||-.++.
T Consensus 472 R~~~tLSGGE~QRV~LAraL~~ 493 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLGA 493 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHhc
Confidence 3557899999999999988764
No 463
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.86 E-value=1.9e+02 Score=25.30 Aligned_cols=51 Identities=2% Similarity=0.090 Sum_probs=25.4
Q ss_pred ccchhhhhcCCCCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 65 SGSDVTAAVRPTPELPV----RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKE 115 (199)
Q Consensus 65 ~~i~~l~~~~~vN~~ai----~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~ 115 (199)
+.+..++++-....... .+.+.++.++..|+.+++...-.++++.++-++.
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55555665443333222 2334445555555555555555555555554443
No 464
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=21.79 E-value=54 Score=37.43 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.3
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||..+++|.-++
T Consensus 2068 ~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2068 AGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred hhhCCHHHHHHHHHHHHHh
Confidence 4579999999988887664
No 465
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.77 E-value=4.1e+02 Score=26.86 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q psy12760 87 RSKEMQAVLATLNTYCTGYEQCLSKR-QKEFDTNFVKIGKRVQECYQML 134 (199)
Q Consensus 87 ~~er~e~L~~e~~~l~~~I~~L~~kr-~~~F~~~f~~In~~fs~iF~~L 134 (199)
+..+|+.|.++-+.++..++.|+++. .++-...|..++...+.+|..+
T Consensus 240 L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esv 288 (683)
T PF08580_consen 240 LEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESV 288 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554433 3334444444444444444444
No 466
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=21.62 E-value=3.4e+02 Score=20.01 Aligned_cols=40 Identities=8% Similarity=0.098 Sum_probs=30.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 73 VRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 73 ~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
..|-||.++.+|+.+..+|.-.+.--...-+.++++....
T Consensus 36 ~~pdnP~~LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~aI 75 (80)
T PRK15326 36 AKPSDPALLAAYQSKLSEYNLYRNAQSNTVKVFKDIDAAI 75 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999998877766666666666666544
No 467
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=21.42 E-value=59 Score=36.31 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 805 q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 805 RPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred CccccCCHHHHHHHHHHHHHh
Confidence 355689999999999998876
No 468
>KOG4025|consensus
Probab=21.32 E-value=1.9e+02 Score=24.53 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEe
Q psy12760 117 DTNFVKIGKRVQECYQMLTFGGKADLEY 144 (199)
Q Consensus 117 ~~~f~~In~~fs~iF~~L~~gG~a~L~l 144 (199)
.+-|-+.++.|+...+.-+..|.+-.++
T Consensus 159 KkEFVkYSK~FS~TLKtYFKdGk~~~~~ 186 (207)
T KOG4025|consen 159 KKEFVKYSKRFSNTLKTYFKDGKKCIRV 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 3456666777776666666556554443
No 469
>KOG0061|consensus
Probab=21.27 E-value=53 Score=32.30 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=14.5
Q ss_pred ccCCcchHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVF 186 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIf 186 (199)
+.+|||||.++++|.=+
T Consensus 169 rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALEL 185 (613)
T ss_pred CccccchhhHHHHHHHH
Confidence 67999999999998643
No 470
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.25 E-value=5.2e+02 Score=22.04 Aligned_cols=44 Identities=5% Similarity=0.132 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 86 KRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQE 129 (199)
Q Consensus 86 e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~ 129 (199)
.+...++.|......+...+.+-...+...+......+.+.+..
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~ 132 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNE 132 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555444444444444443
No 471
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=20.93 E-value=47 Score=22.26 Aligned_cols=16 Identities=44% Similarity=0.464 Sum_probs=9.2
Q ss_pred CCCCcccccccCCcch
Q psy12760 161 PPRKSWKSIDCLSGGE 176 (199)
Q Consensus 161 p~gk~~~~l~~LSGGE 176 (199)
-.++.++-.+.|||||
T Consensus 20 ~~~~SLkv~HNlSg~E 35 (51)
T PF09178_consen 20 DDQKSLKVFHNLSGEE 35 (51)
T ss_dssp ETTEEEEEEEE-SSS-
T ss_pred CCCEEEEEEEecCCCE
Confidence 3345566667888887
No 472
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.84 E-value=2.9e+02 Score=21.10 Aligned_cols=23 Identities=4% Similarity=0.094 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHH
Q psy12760 89 KEMQAVLATLNT----YCTGYEQCLSK 111 (199)
Q Consensus 89 er~e~L~~e~~~----l~~~I~~L~~k 111 (199)
++++.|+++.++ -++.|+++++.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555544444 45555555543
No 473
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=20.54 E-value=3.6e+02 Score=22.88 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy12760 114 KEFDTNFVKIGKRVQECYQML 134 (199)
Q Consensus 114 ~~F~~~f~~In~~fs~iF~~L 134 (199)
..|.+..........+-...|
T Consensus 85 ~EFVEIMKeMQkDMDEKMDvL 105 (205)
T PF15079_consen 85 HEFVEIMKEMQKDMDEKMDVL 105 (205)
T ss_pred HHHHHHHHHHHHhHHHhhhHH
Confidence 344444444455555444444
No 474
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.36 E-value=3.7e+02 Score=20.75 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
.+.+++.++++.++.+...+...+..++...
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444
No 475
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.27 E-value=5.6e+02 Score=22.05 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 102 CTGYEQCLSKRQKEFDTNFVKIGKRVQE 129 (199)
Q Consensus 102 ~~~I~~L~~kr~~~F~~~f~~In~~fs~ 129 (199)
...++++++++.+-..+-.+-....|..
T Consensus 97 ~~~lkkLq~~qmem~~~Q~elmk~qfkP 124 (201)
T COG1422 97 MKKLKKLQEKQMEMMDDQRELMKMQFKP 124 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467888888877777777766677763
No 476
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.02 E-value=67 Score=28.70 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
-.++||||-+-++|||=-+|+
T Consensus 142 ~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 142 YPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred CchhhcchHHHHHHHHHHHhc
Confidence 346999999999999977765
Done!