Query psy12760
Match_columns 199
No_of_seqs 151 out of 1237
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:57:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_B Chromosome segregation 99.8 1.6E-18 5.6E-23 141.2 10.1 86 108-193 1-86 (173)
2 1w1w_A Structural maintenance 99.4 1.3E-13 4.4E-18 124.4 6.1 115 78-192 224-354 (430)
3 4ad8_A DNA repair protein RECN 97.9 0.00032 1.1E-08 64.6 15.5 94 94-187 314-413 (517)
4 1f2t_B RAD50 ABC-ATPase; DNA d 97.2 0.001 3.5E-08 52.1 7.9 67 118-189 9-75 (148)
5 1e69_A Chromosome segregation 97.1 0.00042 1.4E-08 59.9 4.7 73 119-191 166-239 (322)
6 3qkt_A DNA double-strand break 96.8 0.004 1.4E-07 54.1 8.1 70 116-190 198-267 (339)
7 4aby_A DNA repair protein RECN 96.5 0.043 1.5E-06 48.0 12.9 69 119-187 237-311 (415)
8 3auy_A DNA double-strand break 96.4 0.027 9.4E-07 49.4 11.3 36 154-190 264-299 (371)
9 2o5v_A DNA replication and rep 93.8 0.92 3.1E-05 40.1 12.5 64 119-188 193-282 (359)
10 3qf7_A RAD50; ABC-ATPase, ATPa 89.1 3.4 0.00011 36.1 10.8 24 167-190 275-298 (365)
11 3tif_A Uncharacterized ABC tra 87.5 0.22 7.4E-06 41.1 1.8 21 168-188 142-162 (235)
12 1g6h_A High-affinity branched- 87.2 0.28 9.6E-06 40.9 2.4 22 167-188 149-170 (257)
13 1b0u_A Histidine permease; ABC 86.4 0.32 1.1E-05 40.8 2.3 21 168-188 150-170 (262)
14 3gfo_A Cobalt import ATP-bindi 86.3 0.27 9.4E-06 41.8 1.9 22 167-188 139-160 (275)
15 2onk_A Molybdate/tungstate ABC 86.3 0.27 9.3E-06 40.8 1.8 21 168-188 123-143 (240)
16 4g1u_C Hemin import ATP-bindin 86.3 0.33 1.1E-05 40.9 2.4 21 168-188 138-158 (266)
17 2pcj_A ABC transporter, lipopr 86.2 0.23 7.9E-06 40.6 1.3 20 168-187 137-156 (224)
18 2nq2_C Hypothetical ABC transp 85.8 0.37 1.3E-05 40.3 2.4 21 168-188 125-145 (253)
19 2qi9_C Vitamin B12 import ATP- 85.8 0.37 1.3E-05 40.3 2.4 22 168-189 123-144 (249)
20 2ihy_A ABC transporter, ATP-bi 85.6 0.38 1.3E-05 40.9 2.4 21 168-188 158-178 (279)
21 2olj_A Amino acid ABC transpor 85.4 0.32 1.1E-05 41.1 1.8 21 168-188 156-176 (263)
22 1ji0_A ABC transporter; ATP bi 85.3 0.35 1.2E-05 39.9 2.0 20 168-187 136-155 (240)
23 2pjz_A Hypothetical protein ST 85.2 0.4 1.4E-05 40.4 2.4 21 168-188 125-145 (263)
24 2cbz_A Multidrug resistance-as 85.2 0.42 1.4E-05 39.4 2.4 21 168-188 124-144 (237)
25 2d2e_A SUFC protein; ABC-ATPas 84.9 0.44 1.5E-05 39.5 2.5 20 169-188 140-160 (250)
26 1mv5_A LMRA, multidrug resista 84.5 0.47 1.6E-05 39.1 2.4 21 168-188 136-156 (243)
27 1vpl_A ABC transporter, ATP-bi 84.3 0.39 1.3E-05 40.3 1.9 20 168-187 143-162 (256)
28 2pze_A Cystic fibrosis transme 84.2 0.49 1.7E-05 38.7 2.4 20 168-187 127-146 (229)
29 2ff7_A Alpha-hemolysin translo 84.1 0.4 1.4E-05 39.8 1.8 20 168-187 142-161 (247)
30 1sgw_A Putative ABC transporte 84.0 0.34 1.2E-05 39.6 1.4 20 168-187 130-149 (214)
31 2yz2_A Putative ABC transporte 83.6 0.43 1.5E-05 40.0 1.8 21 168-188 135-155 (266)
32 1oxx_K GLCV, glucose, ABC tran 83.3 0.43 1.5E-05 42.1 1.8 21 168-188 137-157 (353)
33 2ghi_A Transport protein; mult 83.3 0.56 1.9E-05 39.3 2.4 21 168-188 152-172 (260)
34 1g29_1 MALK, maltose transport 83.1 0.53 1.8E-05 41.8 2.3 21 168-188 136-156 (372)
35 2ixe_A Antigen peptide transpo 83.0 0.48 1.6E-05 40.0 1.9 20 168-187 153-172 (271)
36 2it1_A 362AA long hypothetical 82.3 0.5 1.7E-05 42.0 1.8 21 168-188 130-150 (362)
37 1z47_A CYSA, putative ABC-tran 82.1 0.51 1.8E-05 41.8 1.8 21 168-188 142-162 (355)
38 1v43_A Sugar-binding transport 81.9 0.53 1.8E-05 41.9 1.8 21 168-188 138-158 (372)
39 3rlf_A Maltose/maltodextrin im 81.9 0.63 2.2E-05 41.7 2.3 21 168-188 130-150 (381)
40 3fvq_A Fe(3+) IONS import ATP- 81.5 0.55 1.9E-05 41.7 1.8 20 168-187 135-154 (359)
41 2yyz_A Sugar ABC transporter, 81.4 0.56 1.9E-05 41.6 1.8 20 168-187 130-149 (359)
42 3d31_A Sulfate/molybdate ABC t 80.9 0.5 1.7E-05 41.7 1.3 20 168-187 124-143 (348)
43 2zu0_C Probable ATP-dependent 80.3 0.74 2.5E-05 38.6 2.1 18 171-188 164-181 (267)
44 2bbs_A Cystic fibrosis transme 79.9 0.79 2.7E-05 39.2 2.2 19 169-187 157-175 (290)
45 3tui_C Methionine import ATP-b 79.4 0.61 2.1E-05 41.6 1.3 20 168-187 160-179 (366)
46 3ozx_A RNAse L inhibitor; ATP 79.3 0.85 2.9E-05 42.4 2.4 21 167-187 381-401 (538)
47 1yqt_A RNAse L inhibitor; ATP- 77.4 0.89 3E-05 42.1 1.9 21 167-187 397-417 (538)
48 3bk7_A ABC transporter ATP-bin 77.1 0.91 3.1E-05 42.9 1.9 21 167-187 467-487 (607)
49 3j16_B RLI1P; ribosome recycli 76.4 0.84 2.9E-05 43.2 1.4 21 167-187 463-483 (608)
50 3bk7_A ABC transporter ATP-bin 76.2 1.2 4E-05 42.1 2.4 22 166-187 223-244 (607)
51 1yqt_A RNAse L inhibitor; ATP- 76.1 1.2 4.1E-05 41.2 2.4 21 167-187 154-174 (538)
52 3nh6_A ATP-binding cassette SU 75.8 1.3 4.5E-05 38.2 2.4 19 169-187 188-206 (306)
53 3euj_A Chromosome partition pr 75.3 20 0.00067 33.0 10.3 22 169-190 377-398 (483)
54 3gd7_A Fusion complex of cysti 71.8 1.7 5.8E-05 38.9 2.2 19 170-188 154-172 (390)
55 3ozx_A RNAse L inhibitor; ATP 71.7 1.8 6.1E-05 40.2 2.4 21 167-187 134-154 (538)
56 3ux8_A Excinuclease ABC, A sub 71.5 1.8 6.2E-05 40.7 2.4 22 167-188 198-219 (670)
57 3ux8_A Excinuclease ABC, A sub 71.5 1.8 6E-05 40.8 2.3 22 167-188 539-560 (670)
58 3j16_B RLI1P; ribosome recycli 68.6 2.3 7.7E-05 40.2 2.4 21 167-187 217-237 (608)
59 3b60_A Lipid A export ATP-bind 65.4 2.9 0.0001 38.6 2.4 19 169-187 478-496 (582)
60 3b5x_A Lipid A export ATP-bind 64.6 2.9 0.0001 38.6 2.2 19 169-187 478-496 (582)
61 2iw3_A Elongation factor 3A; a 64.1 3 0.0001 41.8 2.4 21 168-188 545-565 (986)
62 2yl4_A ATP-binding cassette SU 64.0 3.2 0.00011 38.5 2.4 18 170-187 482-499 (595)
63 4a82_A Cystic fibrosis transme 62.8 3.5 0.00012 38.1 2.4 18 170-187 476-493 (578)
64 3pih_A Uvrabc system protein A 62.2 2.9 0.0001 41.5 1.9 21 167-187 801-821 (916)
65 3qf4_A ABC transporter, ATP-bi 61.5 3.8 0.00013 38.1 2.4 18 170-187 478-495 (587)
66 2iw3_A Elongation factor 3A; a 60.0 3.3 0.00011 41.6 1.8 20 168-187 898-917 (986)
67 3qf4_B Uncharacterized ABC tra 60.0 3.9 0.00013 38.0 2.2 18 170-187 490-507 (598)
68 2yy0_A C-MYC-binding protein; 57.9 24 0.00082 22.9 5.2 32 81-112 18-49 (53)
69 3pih_A Uvrabc system protein A 57.5 4.7 0.00016 40.1 2.4 22 167-188 460-481 (916)
70 1ye8_A Protein THEP1, hypothet 57.1 3.4 0.00012 32.3 1.1 18 168-185 73-90 (178)
71 4f4c_A Multidrug resistance pr 56.7 3.3 0.00011 42.4 1.2 14 170-183 1216-1229(1321)
72 2ygr_A Uvrabc system protein A 55.1 4.6 0.00016 40.6 1.9 22 167-188 517-538 (993)
73 2vf7_A UVRA2, excinuclease ABC 54.6 4 0.00014 40.2 1.4 22 167-188 375-396 (842)
74 2r6f_A Excinuclease ABC subuni 54.4 4.8 0.00016 40.4 1.9 22 167-188 500-521 (972)
75 4f4c_A Multidrug resistance pr 54.1 4.2 0.00014 41.7 1.4 13 171-183 554-566 (1321)
76 2r6f_A Excinuclease ABC subuni 53.6 4.6 0.00016 40.5 1.6 21 167-187 841-861 (972)
77 2ygr_A Uvrabc system protein A 52.9 4.9 0.00017 40.4 1.6 21 167-187 859-879 (993)
78 1uru_A Amphiphysin; endocytosi 52.3 83 0.0028 24.9 8.8 61 70-131 25-85 (244)
79 2vf7_A UVRA2, excinuclease ABC 51.9 3.7 0.00013 40.5 0.6 21 167-187 726-746 (842)
80 3g5u_A MCG1178, multidrug resi 47.4 6.8 0.00023 40.0 1.7 18 170-187 525-542 (1284)
81 4dzo_A Mitotic spindle assembl 43.3 1E+02 0.0035 23.1 7.8 35 100-135 8-42 (123)
82 1go4_E MAD1 (mitotic arrest de 42.3 64 0.0022 23.7 5.9 35 80-114 10-44 (100)
83 3g5u_A MCG1178, multidrug resi 40.2 13 0.00044 38.0 2.4 18 170-187 1170-1187(1284)
84 2fic_A Bridging integrator 1; 38.9 82 0.0028 25.3 6.8 61 70-131 40-100 (251)
85 4egx_A Kinesin-like protein KI 36.8 1.5E+02 0.0053 23.3 9.2 70 93-163 9-91 (184)
86 4avm_A Bridging integrator 2; 36.6 1.5E+02 0.0051 24.1 8.1 61 71-132 22-82 (237)
87 2l5g_A GPS2 protein, G protein 35.4 76 0.0026 19.3 4.8 28 91-118 10-37 (38)
88 3oja_B Anopheles plasmodium-re 34.1 58 0.002 29.4 5.6 11 125-135 572-582 (597)
89 3rrk_A V-type ATPase 116 kDa s 33.0 1.9E+02 0.0064 24.4 8.5 48 79-126 223-270 (357)
90 2npi_A Protein CLP1; CLP1-PCF1 31.6 13 0.00045 33.6 0.8 19 169-187 233-253 (460)
91 3nmd_A CGMP dependent protein 31.4 47 0.0016 23.0 3.5 9 66-74 11-19 (72)
92 4g3b_A Alpha4F3D; alpha helix, 31.2 69 0.0024 17.6 3.8 22 80-101 3-24 (26)
93 2p4w_A Transcriptional regulat 30.2 2E+02 0.007 22.7 8.1 49 87-135 134-182 (202)
94 1yf2_A Type I restriction-modi 28.6 1.9E+02 0.0064 24.0 7.6 45 75-121 164-208 (425)
95 1uru_A Amphiphysin; endocytosi 27.5 2.2E+02 0.0076 22.3 8.4 15 81-95 172-186 (244)
96 3fx7_A Putative uncharacterize 27.2 1.8E+02 0.0061 21.0 6.9 58 75-132 5-66 (94)
97 3v86_A De novo design helix; c 27.0 86 0.003 17.3 3.4 23 86-108 4-26 (27)
98 1nkz_B Light-harvesting protei 25.9 43 0.0015 20.8 2.2 22 175-196 18-41 (41)
99 1a92_A Delta antigen; leucine 25.7 1.4E+02 0.0047 19.2 5.5 32 80-111 5-36 (50)
100 2zqm_A Prefoldin beta subunit 24.3 1.9E+02 0.0064 20.3 6.0 22 88-109 76-97 (117)
101 2lw1_A ABC transporter ATP-bin 22.8 1.9E+02 0.0066 19.9 6.6 51 82-132 22-77 (89)
102 1go4_E MAD1 (mitotic arrest de 22.2 62 0.0021 23.7 2.9 33 77-109 63-95 (100)
103 4a3a_A Amphiphysin; structural 21.6 1.6E+02 0.0055 24.1 5.7 63 71-134 27-89 (243)
104 2ket_A Cathelicidin-6; antimic 21.5 80 0.0027 17.5 2.5 17 120-136 3-19 (27)
105 1lgh_B LH II, B800/850, light 21.2 50 0.0017 20.9 1.9 23 173-195 21-45 (45)
106 3mtu_E Head morphogenesis prot 21.0 2.2E+02 0.0075 19.9 7.5 31 82-112 30-60 (77)
107 3gwk_C SAG1039, putative uncha 20.3 2E+02 0.0069 19.2 7.9 42 93-134 26-71 (98)
108 4fla_A Regulation of nuclear P 20.1 2.9E+02 0.01 21.2 6.6 21 43-63 47-67 (152)
109 3oja_A Leucine-rich immune mol 20.0 2.2E+02 0.0077 24.9 6.7 29 100-129 439-467 (487)
No 1
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.76 E-value=1.6e-18 Score=141.18 Aligned_cols=86 Identities=31% Similarity=0.548 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHH
Q psy12760 108 CLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 108 L~~kr~~~F~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfA 187 (199)
++++++++|+++|++|+.+|+++|+.|++||++.+.+.+++||+..|+++.+.|+|+..+.+..||||||+++++|++||
T Consensus 1 ~~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la 80 (173)
T 3kta_B 1 MEKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFA 80 (173)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeeCCCCccccCceEEecCCCccccccccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcH
Q psy12760 188 LHYYWL 193 (199)
Q Consensus 188 L~~~~~ 193 (199)
++.++|
T Consensus 81 ~~~~~~ 86 (173)
T 3kta_B 81 IQKFKP 86 (173)
T ss_dssp HHHHSC
T ss_pred hcccCC
Confidence 997664
No 2
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.42 E-value=1.3e-13 Score=124.40 Aligned_cols=115 Identities=30% Similarity=0.531 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CceEE
Q psy12760 78 ELPVRDYAKRSKEMQAVLAT-------LNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTF---------GGKAD 141 (199)
Q Consensus 78 ~~ai~ey~e~~er~e~L~~e-------~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~~---------gG~a~ 141 (199)
..|.++|++..+++..+..+ ...+.+.++++++++.+.|..+|+.++.+|+.+|+.++. ||.+.
T Consensus 224 ~~a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~ 303 (430)
T 1w1w_A 224 GPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNAS 303 (430)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHTC-----------CEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCCceEE
Confidence 34566777777776665544 456677888899999999999999999999999999983 78899
Q ss_pred EEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHhc
Q psy12760 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYYW 192 (199)
Q Consensus 142 L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~~ 192 (199)
|.+.++++++..|+.+.+.||++..+++..||||||++++||+.||++.+.
T Consensus 304 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~lS~Gq~~~~~la~~la~~~~~ 354 (430)
T 1w1w_A 304 LTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQ 354 (430)
T ss_dssp EC------------CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSS
T ss_pred EEecCCCCcccCceEEEEECCCccccccccCCcchHHHHHHHHHHHHhcCC
Confidence 988877788889999999999988888899999999999999999987543
No 3
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.90 E-value=0.00032 Score=64.60 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCceEEEEeccCCCCCCc---ceEEEEECC-CCcccc
Q psy12760 94 VLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT-FGGKADLEYKEYSDPYAQ---GIKYVVRPP-RKSWKS 168 (199)
Q Consensus 94 L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~-~gG~a~L~l~~~edp~~~---GI~I~V~p~-gk~~~~ 168 (199)
+..+....++.+...-.............+...+...+..+. +++...+.+....++... .+++.+.++ |...++
T Consensus 314 l~~~~~~~~~~~~~~~~~L~~~R~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 393 (517)
T 4ad8_A 314 LQADVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEELGP 393 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCEEEEEEEECSSCCSSCSEEEEEEEESSTTSCCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEECCcCCCcccceeeeeccCCCCCCccc
Confidence 334444444444444444444445566777778888788774 445555555433322222 455555543 667788
Q ss_pred cccC-CcchHHHHHHHHHHH
Q psy12760 169 IDCL-SGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~L-SGGEKSlaaLalIfA 187 (199)
+..| |||||++++||..++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~ 413 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTV 413 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 8888 999999999999444
No 4
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.24 E-value=0.001 Score=52.08 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHH
Q psy12760 118 TNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 118 ~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~ 189 (199)
..++.|.+..+++|..++.+..-...++.. ..|+++.+...+ ..++...||||||.++++|+.+|+.
T Consensus 9 ~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~-~~~~~~~LSgGe~qrv~lA~~Lala 75 (148)
T 1f2t_B 9 AALSKIGELASEIFAEFTEGKYSEVVVRAE----ENKVRLFVVWEG-KERPLTFLSGGERIALGLAFRLAMS 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCEEEEEET----TSSEEEEEEETT-EEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcchhHHhhhh----cCceEEEecccc-ccCChhHCCHHHHHHHHHHhhhHHH
Confidence 356778888889999995333333333322 236777764322 2356789999999999999887764
No 5
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.09 E-value=0.00042 Score=59.86 Aligned_cols=73 Identities=29% Similarity=0.504 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeccCC-CCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHHh
Q psy12760 119 NFVKIGKRVQECYQMLTFGGKADLEYKEYS-DPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191 (199)
Q Consensus 119 ~f~~In~~fs~iF~~L~~gG~a~L~l~~~e-dp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~~ 191 (199)
.|+++.++|..+++.++.|+.+.+.+.... +.+..|+.+.+.+++.....+..||||||+++++|..||...+
T Consensus 166 ~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~ 239 (322)
T 1e69_A 166 SYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEI 239 (322)
T ss_dssp -CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhcc
Confidence 467788888888888877777655443221 2233477777776666566778999999999999999987543
No 6
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.76 E-value=0.004 Score=54.12 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCCCCCcceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHH
Q psy12760 116 FDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 116 F~~~f~~In~~fs~iF~~L~~gG~a~L~l~~~edp~~~GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
-...+..+...+..+|..+..+....+.....+. .+.+.+.. ....+.+..||||||..+++|+.+|+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~lS~G~~~~~~la~~l~~a~ 267 (339)
T 3qkt_A 198 REAALSKIGELASEIFAEFTEGKYSEVVVRAEEN----KVRLFVVW-EGKERPLTFLSGGERIALGLAFRLAMSL 267 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEETT----EEEEEEEE-TTEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHhcCCChhheeeecccc----cceeeeec-ccCcCChHHCCHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888755443333322221 23333333 3344577899999999999988877754
No 7
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.50 E-value=0.043 Score=48.02 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhhcC-CceEEEEeccCCCCC---CcceEEEEECC-CCcccccccC-CcchHHHHHHHHHHH
Q psy12760 119 NFVKIGKRVQECYQMLTF-GGKADLEYKEYSDPY---AQGIKYVVRPP-RKSWKSIDCL-SGGEKTLASLALVFA 187 (199)
Q Consensus 119 ~f~~In~~fs~iF~~L~~-gG~a~L~l~~~edp~---~~GI~I~V~p~-gk~~~~l~~L-SGGEKSlaaLalIfA 187 (199)
....+...+...+..+.. .....+.+...+..- ...+++.+.+. +...+++..+ |||||++++||..++
T Consensus 237 ~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~ 311 (415)
T 4aby_A 237 EAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTV 311 (415)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHH
Confidence 456667777777777753 223333332110000 11344455554 3344566655 999999999999544
No 8
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.43 E-value=0.027 Score=49.35 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=27.1
Q ss_pred ceEEEEECCCCcccccccCCcchHHHHHHHHHHHHHH
Q psy12760 154 GIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 154 GI~I~V~p~gk~~~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
++++.+..++.. .++..|||||++.++||+.+|+..
T Consensus 264 ~~~~~~~~~~~~-~~~~~lS~G~~~~~~lal~la~a~ 299 (371)
T 3auy_A 264 DFEVRVHAPNGV-LTIDNLSGGEQIAVALSLRLAIAN 299 (371)
T ss_dssp TCCEEEEETTEE-ECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEcCCCc-cchHhcCHHHHHHHHHHHHHHHHH
Confidence 466766655543 356789999999999999888755
No 9
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.79 E-value=0.92 Score=40.10 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhhcCCc-eEEEEeccC--CC----------------------CCCcceEEEEECCCCcccccc-cC
Q psy12760 119 NFVKIGKRVQECYQMLTFGG-KADLEYKEY--SD----------------------PYAQGIKYVVRPPRKSWKSID-CL 172 (199)
Q Consensus 119 ~f~~In~~fs~iF~~L~~gG-~a~L~l~~~--ed----------------------p~~~GI~I~V~p~gk~~~~l~-~L 172 (199)
+++.++..|+.+|..+. +. ...|..... ++ |.-+.+.+.+ .+ .+.. .|
T Consensus 193 ~~~~l~~~~~~~~~~~~-~~e~l~l~y~~~~~~~~~~~~L~~~r~~d~~~g~T~~GPHRdDl~~~~--~~---~~~~~~l 266 (359)
T 2o5v_A 193 ALTRLDELAREANAQLG-SRKTLALTLTESTSPETYAADLRGRRAEELARGSTVTGPHRDDLLLTL--GD---FPASDYA 266 (359)
T ss_dssp HHHHHHHHHHHHHHHTT-CCSCEEEEEECSSCTTTHHHHHHHTHHHHHHHTSCCCSGGGCEEEEEE--TT---EEHHHHC
T ss_pred HHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCHHHHHHHHHHhHHHHHHcCCCCCCCcccCCeecc--CC---cchhhhC
Confidence 67788888889999987 43 355644321 11 1223445544 22 3455 79
Q ss_pred CcchHHHHHHHHHHHH
Q psy12760 173 SGGEKTLASLALVFAL 188 (199)
Q Consensus 173 SGGEKSlaaLalIfAL 188 (199)
|||||..+++|+.+|-
T Consensus 267 S~Gqqq~l~lA~~La~ 282 (359)
T 2o5v_A 267 SRGEGRTVALALRRAE 282 (359)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999983
No 10
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.15 E-value=3.4 Score=36.09 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.4
Q ss_pred cccccCCcchHHHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL~~ 190 (199)
++...||||||++++||..+++.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~ 298 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAE 298 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhh
Confidence 566789999999999999888643
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.45 E-value=0.22 Score=41.12 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 142 ~~~~LSgGq~QRv~iAral~~ 162 (235)
T 3tif_A 142 KPNQLSGGQQQRVAIARALAN 162 (235)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 467999999999999987763
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.23 E-value=0.28 Score=40.92 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.3
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.|+.
T Consensus 149 ~~~~~LSgGqkQrv~iAraL~~ 170 (257)
T 1g6h_A 149 RKAGELSGGQMKLVEIGRALMT 170 (257)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHT
T ss_pred CCchhCCHHHHHHHHHHHHHHc
Confidence 3557999999999999987763
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.39 E-value=0.32 Score=40.78 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 150 ~~~~LSgGq~qRv~lAraL~~ 170 (262)
T 1b0u_A 150 YPVHLSGGQQQRVSIARALAM 170 (262)
T ss_dssp CGGGSCHHHHHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999987763
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.31 E-value=0.27 Score=41.79 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.4
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 139 ~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 139 KPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp SBGGGSCHHHHHHHHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHHHHHc
Confidence 3557899999999999987763
No 15
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.29 E-value=0.27 Score=40.82 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.|+.
T Consensus 123 ~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 123 KPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 456899999999999987753
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.29 E-value=0.33 Score=40.90 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.1
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 138 ~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 138 DYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp BGGGCCHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 456899999999999988774
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.17 E-value=0.23 Score=40.58 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||+++++|-.|+
T Consensus 137 ~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 137 KPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp CGGGSCHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45799999999999997765
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.84 E-value=0.37 Score=40.28 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 456899999999999988764
No 19
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.79 E-value=0.37 Score=40.29 Aligned_cols=22 Identities=41% Similarity=0.339 Sum_probs=18.8
Q ss_pred ccccCCcchHHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFALH 189 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL~ 189 (199)
....||||||++++||-.|+..
T Consensus 123 ~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 123 STNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcC
Confidence 4579999999999999888754
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.63 E-value=0.38 Score=40.90 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 158 ~~~~LSgGqkqRv~lAraL~~ 178 (279)
T 2ihy_A 158 YIGYLSTGEKQRVMIARALMG 178 (279)
T ss_dssp BGGGSCHHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHhC
Confidence 557899999999999987763
No 21
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.42 E-value=0.32 Score=41.07 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 156 ~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 156 YPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHHC
Confidence 457899999999999987753
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.26 E-value=0.35 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||-.|+
T Consensus 136 ~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 136 LGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp BSSSSCHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45689999999999998765
No 23
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.24 E-value=0.4 Score=40.41 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.0
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 125 ~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 125 KLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp BGGGSCHHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHHh
Confidence 457999999999999987764
No 24
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.16 E-value=0.42 Score=39.42 Aligned_cols=21 Identities=38% Similarity=0.246 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||+++++|-.|+.
T Consensus 124 ~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 124 KGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp TSBCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999987764
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.90 E-value=0.44 Score=39.52 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=12.9
Q ss_pred ccc-CCcchHHHHHHHHHHHH
Q psy12760 169 IDC-LSGGEKTLASLALVFAL 188 (199)
Q Consensus 169 l~~-LSGGEKSlaaLalIfAL 188 (199)
... ||||||++++||-.|+.
T Consensus 140 ~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 140 LNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TTCC----HHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHc
Confidence 346 99999999999987764
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.48 E-value=0.47 Score=39.14 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 136 ~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHhc
Confidence 356899999999999987764
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.25 E-value=0.39 Score=40.28 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||-.|+
T Consensus 143 ~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 143 RVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp BGGGCCHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45789999999999998765
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.20 E-value=0.49 Score=38.74 Aligned_cols=20 Identities=35% Similarity=0.292 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||+++++|-.++
T Consensus 127 ~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 127 GGITLSGGQRARISLARAVY 146 (229)
T ss_dssp TCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHh
Confidence 34689999999999998776
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.11 E-value=0.4 Score=39.84 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.3
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||-.|+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999998775
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.05 E-value=0.34 Score=39.64 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||+++++|..|+
T Consensus 130 ~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 130 KLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp BGGGSCHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45799999999999997765
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.57 E-value=0.43 Score=40.03 Aligned_cols=21 Identities=38% Similarity=0.347 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 135 ~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 135 VPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 346899999999999987753
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.32 E-value=0.43 Score=42.08 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+++|||-.++.
T Consensus 137 ~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 137 FPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHHh
Confidence 446999999999999987653
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.31 E-value=0.56 Score=39.25 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
....||||||++++||-.|+.
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHHc
Confidence 346899999999999987764
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.10 E-value=0.53 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.8
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+++|||-.|+.
T Consensus 136 ~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 136 KPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp CGGGSCHHHHHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 446999999999999987764
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.98 E-value=0.48 Score=39.96 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.2
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||++++||-.|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHHh
Confidence 45689999999999998775
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=82.33 E-value=0.5 Score=41.96 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.6
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+++|||-.++.
T Consensus 130 ~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 130 YPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHHc
Confidence 456999999999999987653
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=82.09 E-value=0.51 Score=41.80 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+++|||-.|+.
T Consensus 142 ~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 142 FPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT
T ss_pred CcccCCHHHHHHHHHHHHHHc
Confidence 456999999999999977653
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=81.89 E-value=0.53 Score=41.94 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.5
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+++|||-.|+.
T Consensus 138 ~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 138 YPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp CTTTCCSSCHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHhc
Confidence 446999999999999987653
No 39
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=81.85 E-value=0.63 Score=41.71 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.9
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
...+||||||+++|||--++.
T Consensus 130 ~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 130 KPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH
T ss_pred ChhHCCHHHHHHHHHHHHHHc
Confidence 457999999999999987764
No 40
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=81.52 E-value=0.55 Score=41.73 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
...+||||||+++|||--++
T Consensus 135 ~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 135 YPHELSGGQQQRAALARALA 154 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45699999999999997765
No 41
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=81.41 E-value=0.56 Score=41.56 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
...+||||||+++|||-.|+
T Consensus 130 ~~~~LSgGq~QRvalArAL~ 149 (359)
T 2yyz_A 130 KPTQLSGGQQQRVALARALV 149 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 44699999999999997765
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=80.89 E-value=0.5 Score=41.67 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.0
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
....||||||+++|||-.|+
T Consensus 124 ~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 124 NPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHH
Confidence 45799999999999997665
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.27 E-value=0.74 Score=38.64 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.9
Q ss_pred cCCcchHHHHHHHHHHHH
Q psy12760 171 CLSGGEKTLASLALVFAL 188 (199)
Q Consensus 171 ~LSGGEKSlaaLalIfAL 188 (199)
.||||||++++||-.|+.
T Consensus 164 ~LSgGq~QRv~iAraL~~ 181 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVL 181 (267)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 599999999999987764
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=79.91 E-value=0.79 Score=39.20 Aligned_cols=19 Identities=37% Similarity=0.300 Sum_probs=16.2
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||++++||-.|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~ 175 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVY 175 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHH
Confidence 4689999999999998776
No 45
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=79.42 E-value=0.61 Score=41.65 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=17.0
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
...+||||||++++||--++
T Consensus 160 ~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 160 YPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp CTTTSCHHHHHHHHHHHHTT
T ss_pred ChhhCCHHHHHHHHHHHHHh
Confidence 45699999999999997665
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=79.33 E-value=0.85 Score=42.37 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHH
Confidence 345789999999999998776
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.41 E-value=0.89 Score=42.13 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~ 417 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLL 417 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHT
T ss_pred CChhhCCHHHHHHHHHHHHHH
Confidence 456799999999999998775
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=77.05 E-value=0.91 Score=42.85 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLL 487 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHT
T ss_pred CChhhCCHHHHHHHHHHHHHH
Confidence 456799999999999998775
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=76.38 E-value=0.84 Score=43.17 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTT
T ss_pred CChhhCCHHHHHHHHHHHHHH
Confidence 456789999999999998765
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=76.23 E-value=1.2 Score=42.09 Aligned_cols=22 Identities=27% Similarity=0.355 Sum_probs=18.8
Q ss_pred ccccccCCcchHHHHHHHHHHH
Q psy12760 166 WKSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 166 ~~~l~~LSGGEKSlaaLalIfA 187 (199)
.+....||||||++++||-.++
T Consensus 223 ~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 223 DRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp GSBGGGCCHHHHHHHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHHHh
Confidence 3467799999999999998776
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.08 E-value=1.2 Score=41.22 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.3
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 154 ~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 154 REIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHh
Confidence 467899999999999998776
No 52
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.84 E-value=1.3 Score=38.23 Aligned_cols=19 Identities=37% Similarity=0.295 Sum_probs=16.1
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||++++||-.|+
T Consensus 188 g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 3589999999999997665
No 53
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=75.27 E-value=20 Score=32.99 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.5
Q ss_pred cccCCcchHHHHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFALHY 190 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfAL~~ 190 (199)
...+||||++..-++++-|+..
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~ 398 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQ 398 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCccccHHHHHHHHHHHH
Confidence 6689999999766666666544
No 54
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=71.83 E-value=1.7 Score=38.87 Aligned_cols=19 Identities=37% Similarity=0.268 Sum_probs=16.2
Q ss_pred ccCCcchHHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfAL 188 (199)
..||||||+++|||--++.
T Consensus 154 ~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 4699999999999987663
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=71.74 E-value=1.8 Score=40.20 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+.+..||||||++++||-.++
T Consensus 134 ~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 134 KDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHH
Confidence 456799999999999997765
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=71.51 E-value=1.8 Score=40.72 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~ 219 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGS 219 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHHHHHHHhh
Confidence 4567999999999999987753
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=71.49 E-value=1.8 Score=40.80 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=18.5
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHS
T ss_pred CCchhCCHHHHHHHHHHHHHhh
Confidence 4567999999999999987753
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=68.61 E-value=2.3 Score=40.22 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.9
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+.+..||||||++++||-.++
T Consensus 217 ~~~~~LSgGe~Qrv~iAraL~ 237 (608)
T 3j16_B 217 RDIEKLSGGELQRFAIGMSCV 237 (608)
T ss_dssp SCTTTCCHHHHHHHHHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHH
Confidence 456799999999999997765
No 59
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=65.40 E-value=2.9 Score=38.64 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.0
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||+++++|-.++
T Consensus 478 ~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3589999999999987665
No 60
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=64.58 E-value=2.9 Score=38.64 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.0
Q ss_pred cccCCcchHHHHHHHHHHH
Q psy12760 169 IDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalIfA 187 (199)
...||||||+++++|-.++
T Consensus 478 ~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALL 496 (582)
T ss_pred CCcCCHHHHHHHHHHHHHH
Confidence 3689999999999987654
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=64.13 E-value=3 Score=41.83 Aligned_cols=21 Identities=38% Similarity=0.349 Sum_probs=17.7
Q ss_pred ccccCCcchHHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfAL 188 (199)
.+..||||||++++||-.|+.
T Consensus 545 ~~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 545 PISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp BGGGCCHHHHHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHHhc
Confidence 345899999999999988764
No 62
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=64.01 E-value=3.2 Score=38.49 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.6
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||+++++|--++
T Consensus 482 ~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALL 499 (595)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHH
Confidence 589999999999987664
No 63
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.85 E-value=3.5 Score=38.15 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.1
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||+++++|=-+.
T Consensus 476 ~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHH
Confidence 479999999999986654
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=62.25 E-value=2.9 Score=41.54 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=17.6
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
++...||||||++++||--|+
T Consensus 801 q~~~~LSGGErQRV~LAraL~ 821 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELR 821 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHT
T ss_pred CCccCCCHHHHHHHHHHHHHh
Confidence 456789999999999997664
No 65
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=61.50 E-value=3.8 Score=38.05 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.0
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||+++++|=-+.
T Consensus 478 ~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALV 495 (587)
T ss_dssp CSSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 479999999999986543
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=60.01 E-value=3.3 Score=41.56 Aligned_cols=20 Identities=40% Similarity=0.295 Sum_probs=17.1
Q ss_pred ccccCCcchHHHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalIfA 187 (199)
.+..||||||++++||-.|+
T Consensus 898 ~~~~LSGGQkQRVaLArAL~ 917 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTW 917 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHH
Confidence 45789999999999997764
No 67
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=59.96 E-value=3.9 Score=38.04 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.0
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||+++++|=-+.
T Consensus 490 ~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 479999999999986554
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.93 E-value=24 Score=22.87 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 81 VRDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 81 i~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
..+|+.++.+.++|+.+.+.+.+.++++..+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888777777777653
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=57.53 E-value=4.7 Score=40.09 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=18.4
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++-
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~ 481 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGS 481 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHHHHHHHhh
Confidence 4567899999999999977763
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.12 E-value=3.4 Score=32.30 Aligned_cols=18 Identities=6% Similarity=-0.359 Sum_probs=14.9
Q ss_pred ccccCCcchHHHHHHHHH
Q psy12760 168 SIDCLSGGEKTLASLALV 185 (199)
Q Consensus 168 ~l~~LSGGEKSlaaLalI 185 (199)
....||||||+.+++|-.
T Consensus 73 ~~~~lSgG~~qr~~la~a 90 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILER 90 (178)
T ss_dssp EEECHHHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHHHhh
Confidence 445799999999998874
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.74 E-value=3.3 Score=42.36 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=12.5
Q ss_pred ccCCcchHHHHHHH
Q psy12760 170 DCLSGGEKTLASLA 183 (199)
Q Consensus 170 ~~LSGGEKSlaaLa 183 (199)
..||||||++.|||
T Consensus 1216 ~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1216 TQLSGGQKQRIAIA 1229 (1321)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHH
Confidence 47999999999887
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=55.12 E-value=4.6 Score=40.63 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.7
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHHHHhh
Confidence 3567899999999999988764
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=54.61 E-value=4 Score=40.17 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=18.6
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 375 r~~~tLSGGe~QRV~LA~aL~~ 396 (842)
T 2vf7_A 375 RSTPTLSPGELQRLRLATQLYS 396 (842)
T ss_dssp CBGGGSCHHHHHHHHHHHHTTT
T ss_pred CCcCcCCHHHHHHHHHHHHHhh
Confidence 4667999999999999987763
No 74
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=54.41 E-value=4.8 Score=40.41 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=18.8
Q ss_pred cccccCCcchHHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFAL 188 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfAL 188 (199)
+....||||||++++||-.++.
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~ 521 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGS 521 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHHHhh
Confidence 4567999999999999988764
No 75
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.10 E-value=4.2 Score=41.66 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=12.1
Q ss_pred cCCcchHHHHHHH
Q psy12760 171 CLSGGEKTLASLA 183 (199)
Q Consensus 171 ~LSGGEKSlaaLa 183 (199)
.||||||+++|||
T Consensus 554 ~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 554 QLSGGQKQRIAIA 566 (1321)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6999999999998
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=53.58 E-value=4.6 Score=40.50 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.1
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 841 ~~~~~LSGGekQRv~LAraL~ 861 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELH 861 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHS
T ss_pred CchhhCCHHHHHHHHHHHHHh
Confidence 456789999999999998765
No 77
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=52.88 E-value=4.9 Score=40.43 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.0
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 859 ~~~~~LSGGekQRv~LAraL~ 879 (993)
T 2ygr_A 859 QPAPTLSGGEAQRVKLASELQ 879 (993)
T ss_dssp CCGGGSCHHHHHHHHHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHH
Confidence 456789999999999998775
No 78
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=52.34 E-value=83 Score=24.89 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=41.5
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 70 TAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECY 131 (199)
Q Consensus 70 l~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF 131 (199)
...+|.++...-.+|++..++++.+.+....+.+.++..-...+. +..+...+...+..+|
T Consensus 25 ~~k~G~~e~t~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~-~~~~~~~l~~~~~~l~ 85 (244)
T 1uru_A 25 LQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRA-AQAASKTLMDSVCEIY 85 (244)
T ss_dssp -CCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHS
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 445788888888899999999999998888887777776655443 2223334444444433
No 79
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=51.87 E-value=3.7 Score=40.45 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=17.8
Q ss_pred cccccCCcchHHHHHHHHHHH
Q psy12760 167 KSIDCLSGGEKTLASLALVFA 187 (199)
Q Consensus 167 ~~l~~LSGGEKSlaaLalIfA 187 (199)
+....||||||++++||-.++
T Consensus 726 ~~~~~LSGGekQRv~LAraL~ 746 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELR 746 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTS
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 466799999999999997665
No 80
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=47.44 E-value=6.8 Score=39.97 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.0
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||++++||=.+.
T Consensus 525 ~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHh
Confidence 479999999999986553
No 81
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=43.29 E-value=1e+02 Score=23.09 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12760 100 TYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT 135 (199)
Q Consensus 100 ~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~ 135 (199)
.+++.++..++ +..|+.++|.+=...|.+....|+
T Consensus 8 ~l~~qi~~~ek-r~~RLKevF~~ks~eFReav~~Ll 42 (123)
T 4dzo_A 8 ELKKQVESAEL-KNQRLKEVFQTKIQEFRKACYTLT 42 (123)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444333 335666777777777777666665
No 82
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.27 E-value=64 Score=23.66 Aligned_cols=35 Identities=0% Similarity=-0.084 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQK 114 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~ 114 (199)
.-++|..++++++.|+.+.+.+++.++.|+-+...
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999998888776643
No 83
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=40.23 E-value=13 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.1
Q ss_pred ccCCcchHHHHHHHHHHH
Q psy12760 170 DCLSGGEKTLASLALVFA 187 (199)
Q Consensus 170 ~~LSGGEKSlaaLalIfA 187 (199)
..||||||++++||=.+.
T Consensus 1170 ~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 369999999999986654
No 84
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=38.88 E-value=82 Score=25.30 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=33.2
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 70 TAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECY 131 (199)
Q Consensus 70 l~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF 131 (199)
...+|.++...-++|++..+++..+......+.+.++..-+....... ....+...+..+|
T Consensus 40 ~~k~G~~e~T~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~-~~~~l~~~~~~l~ 100 (251)
T 2fic_A 40 LQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHE-ASKKLNECLQEVY 100 (251)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 445777777766799999999999988888887777776665554332 4444444444433
No 85
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=36.83 E-value=1.5e+02 Score=23.30 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCceEEEEec--------cCCCCCCcceEEEE
Q psy12760 93 AVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT-----FGGKADLEYK--------EYSDPYAQGIKYVV 159 (199)
Q Consensus 93 ~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~-----~gG~a~L~l~--------~~edp~~~GI~I~V 159 (199)
++.+++..-++.++++.+.|.+++..+ +++...-......+. .|+...+... -.+||..+|+-+..
T Consensus 9 e~~e~L~~~e~l~~el~~tWeeKl~~t-e~~~~e~~~~l~~~gi~~~~~~~~~gv~~~~~~PhLvnLn~Dp~ls~~l~y~ 87 (184)
T 4egx_A 9 EAIERLKETEKIIAELNETWEEKLRRT-EAIRMEREALLAEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYY 87 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTEEEETTTEEEEEECCSSSCEEEECCCCTTCSSCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHcCcchhhcccccceecCCCCceEEeccCCcccCceEEEE
Confidence 444555555777888888888888753 555555555555553 1222222221 14678777766655
Q ss_pred ECCC
Q psy12760 160 RPPR 163 (199)
Q Consensus 160 ~p~g 163 (199)
-.+|
T Consensus 88 L~~g 91 (184)
T 4egx_A 88 IKDG 91 (184)
T ss_dssp CCSE
T ss_pred ECCC
Confidence 4443
No 86
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=36.65 E-value=1.5e+02 Score=24.09 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=44.0
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12760 71 AAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQ 132 (199)
Q Consensus 71 ~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~ 132 (199)
..+|.++...-++|++..+++..++.....+.+.++.--.....-. .+-..+...|..+|.
T Consensus 22 qk~G~~e~T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~-~~q~~~~~~l~~~y~ 82 (237)
T 4avm_A 22 QKLGKAVETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMH-ESSKRVSETLQEIYS 82 (237)
T ss_dssp HHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSC
T ss_pred HHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 3477778888889999999999999988888877776666554432 244556666666664
No 87
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.44 E-value=76 Score=19.33 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 91 MQAVLATLNTYCTGYEQCLSKRQKEFDT 118 (199)
Q Consensus 91 ~e~L~~e~~~l~~~I~~L~~kr~~~F~~ 118 (199)
+++.+.++..++..++.|++++.+-|..
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566667777888888888887763
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.09 E-value=58 Score=29.36 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=4.2
Q ss_pred HHHHHHHhhhc
Q psy12760 125 KRVQECYQMLT 135 (199)
Q Consensus 125 ~~fs~iF~~L~ 135 (199)
..++..-..+.
T Consensus 572 ~~~~~l~~~~~ 582 (597)
T 3oja_B 572 QKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 33333333333
No 89
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.01 E-value=1.9e+02 Score=24.44 Aligned_cols=48 Identities=4% Similarity=-0.063 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 79 LPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKR 126 (199)
Q Consensus 79 ~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~ 126 (199)
...+.+.++.+++++++.+++.+++.+.++.+.....+......+...
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 270 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDE 270 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999988877777777766543
No 90
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=31.60 E-value=13 Score=33.63 Aligned_cols=19 Identities=5% Similarity=-0.284 Sum_probs=16.4
Q ss_pred cccCCcchHHHHHHHHH--HH
Q psy12760 169 IDCLSGGEKTLASLALV--FA 187 (199)
Q Consensus 169 l~~LSGGEKSlaaLalI--fA 187 (199)
...||||||+.+++|.. |+
T Consensus 233 ~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhc
Confidence 45899999999999987 55
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.44 E-value=47 Score=23.03 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=0.5
Q ss_pred cchhhhhcC
Q psy12760 66 GSDVTAAVR 74 (199)
Q Consensus 66 ~i~~l~~~~ 74 (199)
++..++.||
T Consensus 11 ~~~~~~~mg 19 (72)
T 3nmd_A 11 GMASIEGRG 19 (72)
T ss_dssp --------C
T ss_pred chhhcccCC
Confidence 334445555
No 92
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=31.19 E-value=69 Score=17.59 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTY 101 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l 101 (199)
|-+.|+++.+.-+.|++.++++
T Consensus 3 ade~ykeled~qerlrk~rkkl 24 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 5566777766666666655554
No 93
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=30.15 E-value=2e+02 Score=22.70 Aligned_cols=49 Identities=2% Similarity=-0.004 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12760 87 RSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT 135 (199)
Q Consensus 87 ~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L~ 135 (199)
+.+++..+++..+.+...-..++....+....+.+.+...+.++|..+.
T Consensus 134 l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 182 (202)
T 2p4w_A 134 LNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRDIE 182 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555666666667777788888888899999999998884
No 94
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=28.55 E-value=1.9e+02 Score=24.02 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 75 PTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFV 121 (199)
Q Consensus 75 ~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~ 121 (199)
++++ ++|-++..+-++.+.+.++..++.++.+++.++.-+.++|.
T Consensus 164 ~lPp--l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 164 PLPP--LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554 45556677777788888888888899998888888777776
No 95
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=27.51 E-value=2.2e+02 Score=22.27 Aligned_cols=15 Identities=0% Similarity=0.042 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy12760 81 VRDYAKRSKEMQAVL 95 (199)
Q Consensus 81 i~ey~e~~er~e~L~ 95 (199)
.+++++.++.|+.+.
T Consensus 172 e~el~~ak~~ye~ln 186 (244)
T 1uru_A 172 REQLEEARRTYEILN 186 (244)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 96
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.20 E-value=1.8e+02 Score=21.03 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=40.8
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q psy12760 75 PTPELPVRDYAKRSKEMQ-AVLATLNTYCTGYEQCL---SKRQKEFDTNFVKIGKRVQECYQ 132 (199)
Q Consensus 75 ~vN~~ai~ey~e~~er~e-~L~~e~~~l~~~I~~L~---~kr~~~F~~~f~~In~~fs~iF~ 132 (199)
.+|+.-++.|..-.+++. .|..+..++...+..|+ .+++..|...|+...+.++++..
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e 66 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE 66 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777766555554 47777888888888886 34577788888887777776544
No 97
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.96 E-value=86 Score=17.34 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 86 KRSKEMQAVLATLNTYCTGYEQC 108 (199)
Q Consensus 86 e~~er~e~L~~e~~~l~~~I~~L 108 (199)
+++++..+|+.+...+++..+++
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45667777777777777766654
No 98
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=25.91 E-value=43 Score=20.78 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=15.9
Q ss_pred chHHHHHHHHH--HHHHHhcHhhh
Q psy12760 175 GEKTLASLALV--FALHYYWLWLQ 196 (199)
Q Consensus 175 GEKSlaaLalI--fAL~~~~~~~~ 196 (199)
|=+.++++|++ +..|.++||+.
T Consensus 18 ~~~~F~~iA~vAH~l~w~wrPWl~ 41 (41)
T 1nkz_B 18 GTRVFLGLALVAHFLAFSATPWLH 41 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44556666665 78899999983
No 99
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.70 E-value=1.4e+02 Score=19.22 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 80 PVRDYAKRSKEMQAVLATLNTYCTGYEQCLSK 111 (199)
Q Consensus 80 ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~k 111 (199)
+++++-.-..+.++|+....+.++.|++|++.
T Consensus 5 ~LeqWv~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 5 ILEQWVSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46667666777888888887778777777653
No 100
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.33 E-value=1.9e+02 Score=20.31 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12760 88 SKEMQAVLATLNTYCTGYEQCL 109 (199)
Q Consensus 88 ~er~e~L~~e~~~l~~~I~~L~ 109 (199)
.++.+.+...++.+.+.++.+.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~ 97 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLN 97 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 101
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.79 E-value=1.9e+02 Score=19.89 Aligned_cols=51 Identities=8% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTGYEQC-----LSKRQKEFDTNFVKIGKRVQECYQ 132 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~I~~L-----~~kr~~~F~~~f~~In~~fs~iF~ 132 (199)
.+++.+..+++.|+.++..|...+.+- +-.+...+..-+..+...+...|.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666555555431 223334444455555555554443
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.19 E-value=62 Score=23.73 Aligned_cols=33 Identities=3% Similarity=-0.154 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 77 PELPVRDYAKRSKEMQAVLATLNTYCTGYEQCL 109 (199)
Q Consensus 77 N~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~ 109 (199)
|+.|...|+..++.++.|+.+.+.++..+..+.
T Consensus 63 ~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 63 LNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788888889999999999988888776543
No 103
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=21.62 E-value=1.6e+02 Score=24.07 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=42.2
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12760 71 AAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQML 134 (199)
Q Consensus 71 ~~~~~vN~~ai~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr~~~F~~~f~~In~~fs~iF~~L 134 (199)
..+|.++...-++|++..+++..++.....+.+.++.--+..+.-. .+-..+...|..+|.-.
T Consensus 27 qk~G~~~~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~-~~q~~~ae~l~~ly~p~ 89 (243)
T 4a3a_A 27 QKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQ-EASMKLTESLHEVYEPD 89 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCTT
T ss_pred HHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCcc
Confidence 3356566667788999999999998888888777766555554332 24455666666655543
No 104
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=21.51 E-value=80 Score=17.49 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy12760 120 FVKIGKRVQECYQMLTF 136 (199)
Q Consensus 120 f~~In~~fs~iF~~L~~ 136 (199)
|....+.|...|++|.+
T Consensus 3 fkrfrkkfkklfkklsp 19 (27)
T 2ket_A 3 FKRFRKKFKKLFKKLSP 19 (27)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 44555666677777654
No 105
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=21.20 E-value=50 Score=20.91 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=16.6
Q ss_pred CcchHHHHHHHHH--HHHHHhcHhh
Q psy12760 173 SGGEKTLASLALV--FALHYYWLWL 195 (199)
Q Consensus 173 SGGEKSlaaLalI--fAL~~~~~~~ 195 (199)
-.|=+.++++|++ +..|.++||+
T Consensus 21 ~~~~~~F~~iA~vAH~L~~~wrPWl 45 (45)
T 1lgh_B 21 KTTFSAFIILAAVAHVLVWVWKPWF 45 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455666777766 7889999996
No 106
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.96 E-value=2.2e+02 Score=19.87 Aligned_cols=31 Identities=3% Similarity=0.011 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112 (199)
Q Consensus 82 ~ey~e~~er~e~L~~e~~~l~~~I~~L~~kr 112 (199)
+-.+++...|...+++++.+++.+...+.+.
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~ 60 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEEN 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445566666667777777777665444443
No 107
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.29 E-value=2e+02 Score=19.22 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q psy12760 93 AVLATLNTYCTGYEQCLSKR----QKEFDTNFVKIGKRVQECYQML 134 (199)
Q Consensus 93 ~L~~e~~~l~~~I~~L~~kr----~~~F~~~f~~In~~fs~iF~~L 134 (199)
++...+..|...+..|...| ...|...|+..+..+..+-..|
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L 71 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLL 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544 4566666666666665544333
No 108
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.08 E-value=2.9e+02 Score=21.24 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=11.5
Q ss_pred cccccCCCCCCCCCCCCCCCC
Q psy12760 43 SIHTTPRSANTMAPASKWRSP 63 (199)
Q Consensus 43 ~~~~~p~~~~~~~p~~~lr~~ 63 (199)
.|.++|-..++.-.+.++++.
T Consensus 47 ~Ia~LP~eVsd~s~l~klkDk 67 (152)
T 4fla_A 47 KIASLPQEVQDVSLLEKITDK 67 (152)
T ss_dssp HHHTSCGGGTCGGGGGGCCSH
T ss_pred HHHcCCccccCHHHHHHcccH
Confidence 456666665555554555443
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.05 E-value=2.2e+02 Score=24.90 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12760 100 TYCTGYEQCLSKRQKEFDTNFVKIGKRVQE 129 (199)
Q Consensus 100 ~l~~~I~~L~~kr~~~F~~~f~~In~~fs~ 129 (199)
...+.++++++ ..++....++.+...+..
T Consensus 439 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 439 MYQHKETQLAE-ENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHH-HhhhhhhhhhhhhhhhHh
Confidence 33444444444 233344444444444443
Done!