Your job contains 1 sequence.
>psy12760
MELEREHHEEIVEKKRRAIVTRPCSITSWMAVLSISDILSNSSIHTTPRSANTMAPASKW
RSPVSGSDVTAAVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNF
VKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLA
SLALVFALHYYWLWLQNIY
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12760
(199 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0015391 - symbol:glu "gluon" species:7227 "Drosoph... 271 4.4e-22 1
MGI|MGI:1917349 - symbol:Smc4 "structural maintenance of ... 262 3.5e-21 1
UNIPROTKB|Q9ERA5 - symbol:SMC4 "Structural maintenance of... 261 4.3e-21 1
UNIPROTKB|F1MAD9 - symbol:Smc4 "Structural maintenance of... 261 4.5e-21 1
UNIPROTKB|F1SH51 - symbol:SMC4 "Structural maintenance of... 261 4.5e-21 1
UNIPROTKB|F1NN18 - symbol:SMC4 "Uncharacterized protein" ... 255 5.5e-21 1
UNIPROTKB|E9PD53 - symbol:SMC4 "Structural maintenance of... 259 7.2e-21 1
UNIPROTKB|Q9NTJ3 - symbol:SMC4 "Structural maintenance of... 259 7.4e-21 1
UNIPROTKB|E2RCX4 - symbol:SMC4 "Structural maintenance of... 258 9.5e-21 1
UNIPROTKB|P50532 - symbol:smc4 "Structural maintenance of... 257 1.2e-20 1
UNIPROTKB|E1BMZ9 - symbol:SMC4 "Structural maintenance of... 256 1.5e-20 1
DICTYBASE|DDB_G0286403 - symbol:smc4 "structural maintena... 256 1.8e-20 1
UNIPROTKB|F1NDN4 - symbol:SMC4 "Structural maintenance of... 255 2.0e-20 1
UNIPROTKB|F1P3C6 - symbol:SMC4 "Structural maintenance of... 255 2.0e-20 1
ZFIN|ZDB-GENE-020419-21 - symbol:smc4 "structural mainten... 250 6.8e-20 1
ASPGD|ASPL0000075987 - symbol:AN4597 species:162425 "Emer... 241 1.9e-19 2
CGD|CAL0003745 - symbol:SMC4 species:5476 "Candida albica... 231 7.7e-18 1
POMBASE|SPBC146.03c - symbol:cut3 "condensin complex subu... 228 1.5e-17 1
WB|WBGene00004874 - symbol:smc-4 species:6239 "Caenorhabd... 226 3.1e-17 1
UNIPROTKB|Q20060 - symbol:smc-4 "Structural maintenance o... 226 3.1e-17 1
SGD|S000004076 - symbol:SMC4 "Subunit of the condensin co... 225 3.5e-17 1
WB|WBGene00001086 - symbol:dpy-27 species:6239 "Caenorhab... 200 1.7e-14 1
UNIPROTKB|P48996 - symbol:dpy-27 "Chromosome condensation... 200 1.7e-14 1
ASPGD|ASPL0000036762 - symbol:AN2963 species:162425 "Emer... 175 1.0e-13 2
POMBASE|SPBC29A10.04 - symbol:psm1 "mitotic cohesin compl... 168 3.5e-11 1
UNIPROTKB|O93308 - symbol:smc1a "Structural maintenance o... 156 1.0e-10 2
UNIPROTKB|O97593 - symbol:SMC1A "Structural maintenance o... 156 1.0e-10 2
UNIPROTKB|E2QV07 - symbol:SMC1A "Structural maintenance o... 156 1.0e-10 2
UNIPROTKB|Q14683 - symbol:SMC1A "Structural maintenance o... 156 1.0e-10 2
UNIPROTKB|F2Z5A8 - symbol:LOC100523938 "Structural mainte... 156 1.0e-10 2
MGI|MGI:1344345 - symbol:Smc1a "structural maintenance of... 156 1.0e-10 2
RGD|61991 - symbol:Smc1a "structural maintenance of chrom... 156 1.0e-10 2
UNIPROTKB|Q9Z1M9 - symbol:Smc1a "Structural maintenance o... 156 1.0e-10 2
UNIPROTKB|I3LMC6 - symbol:LOC100523938 "Structural mainte... 156 1.0e-10 2
ZFIN|ZDB-GENE-090506-9 - symbol:smc1a "structural mainten... 156 6.6e-10 1
CGD|CAL0001080 - symbol:SMC1 species:5476 "Candida albica... 155 8.6e-10 1
ZFIN|ZDB-GENE-040426-57 - symbol:smc1al "structural maint... 154 1.1e-09 1
SGD|S000001886 - symbol:SMC1 "Subunit of the multiprotein... 149 3.7e-09 1
UNIPROTKB|G3X7C0 - symbol:SMC1A "Structural maintenance o... 141 3.7e-09 2
UNIPROTKB|P51834 - symbol:smc "Chromosome partition prote... 140 3.2e-08 1
DICTYBASE|DDB_G0291752 - symbol:smc1 "structural maintena... 139 4.9e-08 1
TIGR_CMR|GSU_1130 - symbol:GSU_1130 "chromosome segregati... 138 5.2e-08 1
WB|WBGene00001860 - symbol:him-1 species:6239 "Caenorhabd... 137 7.2e-08 1
UNIPROTKB|Q5LNH7 - symbol:smc "Chromosome partition prote... 130 3.6e-07 1
TIGR_CMR|SPO_3228 - symbol:SPO_3228 "SMC protein" species... 130 3.6e-07 1
TIGR_CMR|BA_3986 - symbol:BA_3986 "chromosome segregation... 130 3.8e-07 1
UNIPROTKB|F6V533 - symbol:SMC1B "Uncharacterized protein"... 129 4.3e-07 1
UNIPROTKB|E2QRT5 - symbol:SMC1B "Structural maintenance o... 129 5.0e-07 1
UNIPROTKB|F1N6C8 - symbol:SMC1B "Structural maintenance o... 127 8.2e-07 1
UNIPROTKB|F1SM58 - symbol:F1SM58 "Structural maintenance ... 126 1.0e-06 1
RGD|1308791 - symbol:Smc1b "structural maintenance of chr... 126 1.1e-06 1
MGI|MGI:2154049 - symbol:Smc1b "structural maintenance of... 126 1.1e-06 1
UNIPROTKB|Q8NDV3 - symbol:SMC1B "Structural maintenance o... 124 3.4e-06 1
UNIPROTKB|F1NX72 - symbol:SMC1B "Structural maintenance o... 122 1.4e-05 1
UNIPROTKB|F1NX73 - symbol:SMC1B "Structural maintenance o... 122 1.4e-05 1
TIGR_CMR|CHY_1443 - symbol:CHY_1443 "chromosome segregati... 120 3.5e-05 1
UNIPROTKB|Q97QG7 - symbol:smc "Chromosome partition prote... 118 7.8e-05 1
GENEDB_PFALCIPARUM|PF11_0317 - symbol:PF11_0317 "structur... 115 0.00036 1
UNIPROTKB|Q8II57 - symbol:PF11_0317 "Structural maintenan... 115 0.00036 1
>FB|FBgn0015391 [details] [associations]
symbol:glu "gluon" species:7227 "Drosophila melanogaster"
[GO:0007076 "mitotic chromosome condensation" evidence=ISS;NAS;IMP]
[GO:0000796 "condensin complex" evidence=ISS;NAS;TAS] [GO:0000166
"nucleotide binding" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0007422 "peripheral nervous system development"
evidence=TAS] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000785 "chromatin" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005694 "chromosome"
evidence=IDA] [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISS;NAS;IMP] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0000819 "sister chromatid segregation"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0007052
GO:GO:0000166 GO:GO:0003677 GO:GO:0006281 GO:GO:0007422
GO:GO:0000785 GO:GO:0006310 GO:GO:0007076 GO:GO:0000796
GO:GO:0007062 SUPFAM:SSF75553 HSSP:Q9X0R4 FlyBase:FBgn0015391
EMBL:AF185287 ProteinModelPortal:Q9U6I2 STRING:Q9U6I2 PRIDE:Q9U6I2
InParanoid:Q9U6I2 ArrayExpress:Q9U6I2 Bgee:Q9U6I2 Uniprot:Q9U6I2
Length = 1409
Score = 271 (100.5 bits), Expect = 4.4e-22, P = 4.4e-22
Identities = 52/108 (48%), Positives = 72/108 (66%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y R + ++ + + N YE+ +R KEF F I ++++E YQM+T GG A+LE
Sbjct: 1118 YLDRVRVLEDITSKRNEMRDKYEEVRKRRYKEFMDGFSIITRKLKEMYQMITLGGDAELE 1177
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+ +G+ + VRPP+KSWK I LSGGEKTL+SLALVFALHYY
Sbjct: 1178 LVDSMDPFTEGVNFTVRPPKKSWKYISNLSGGEKTLSSLALVFALHYY 1225
>MGI|MGI:1917349 [details] [associations]
symbol:Smc4 "structural maintenance of chromosomes 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000796 "condensin complex" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=ISO] [GO:0010032
"meiotic chromosome condensation" evidence=IMP] [GO:0030261
"chromosome condensation" evidence=IEA] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051383 "kinetochore organization" evidence=IMP]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 MGI:MGI:1917349
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0051301 GO:GO:0006281 GO:GO:0006310 GO:GO:0046982
GO:GO:0045132 GO:GO:0007076 GO:GO:0051383 GO:GO:0000796
GO:GO:0010032 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 PDB:3L51
PDBsum:3L51 OMA:IAIEFLT CTD:10051 HOGENOM:HOG000184777
HOVERGEN:HBG106696 OrthoDB:EOG4PZJ5V EMBL:AJ534940 EMBL:BC005507
EMBL:BC062939 EMBL:AK088350 EMBL:AK088846 IPI:IPI00229397
RefSeq:NP_598547.1 UniGene:Mm.206841 ProteinModelPortal:Q8CG47
SMR:Q8CG47 STRING:Q8CG47 PhosphoSite:Q8CG47 PaxDb:Q8CG47
PRIDE:Q8CG47 Ensembl:ENSMUST00000042901 GeneID:70099 KEGG:mmu:70099
UCSC:uc008pma.1 InParanoid:Q8CG47 ChiTaRS:SMC4
EvolutionaryTrace:Q8CG47 NextBio:330998 Bgee:Q8CG47 CleanEx:MM_SMC4
Genevestigator:Q8CG47 GermOnline:ENSMUSG00000034349 Uniprot:Q8CG47
Length = 1286
Score = 262 (97.3 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1101 YLQRVAELDKITSERDNFRQAYEDLRKQRLNEFMAGFYVITNKLKENYQMLTLGGDAELE 1160
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1161 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1208
>UNIPROTKB|Q9ERA5 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:47230 "Microtus arvalis" [GO:0007076 "mitotic chromosome
condensation" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0051301 GO:GO:0006281 GO:GO:0006310
GO:GO:0046982 GO:GO:0007076 GO:GO:0007062 SUPFAM:SSF75553
HOVERGEN:HBG106696 EMBL:AJ299713 EMBL:AJ299717
ProteinModelPortal:Q9ERA5 Uniprot:Q9ERA5
Length = 1243
Score = 261 (96.9 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1058 YLQRVAELDKITSERDNFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1117
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1118 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1165
>UNIPROTKB|F1MAD9 [details] [associations]
symbol:Smc4 "Structural maintenance of chromosomes protein"
species:10116 "Rattus norvegicus" [GO:0000796 "condensin complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:1306680 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
CTD:10051 IPI:IPI00372213 RefSeq:NP_001032262.2 UniGene:Rn.163695
Ensembl:ENSRNOT00000013931 GeneID:295107 KEGG:rno:295107
NextBio:638993 Uniprot:F1MAD9
Length = 1286
Score = 261 (96.9 bits), Expect = 4.5e-21, P = 4.5e-21
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1101 YLQRVGELDKITSERDNFRQAYEDLRKQRLNEFMAGFYVITNKLKENYQMLTLGGDAELE 1160
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1161 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1208
>UNIPROTKB|F1SH51 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051383 "kinetochore organization" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0010032 "meiotic
chromosome condensation" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
CTD:10051 EMBL:CU466375 RefSeq:XP_001927540.1 UniGene:Ssc.7850
Ensembl:ENSSSCT00000012842 GeneID:100152361 KEGG:ssc:100152361
Uniprot:F1SH51
Length = 1288
Score = 261 (96.9 bits), Expect = 4.5e-21, P = 4.5e-21
Identities = 53/108 (49%), Positives = 70/108 (64%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1103 YLQRVAELDKITYERDNFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1162
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+A+GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1163 LVDSLDPFAEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1210
>UNIPROTKB|F1NN18 [details] [associations]
symbol:SMC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] InterPro:IPR010935 Pfam:PF06470 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005694 GO:GO:0051276
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 EMBL:AADN02021066
IPI:IPI00819477 Ensembl:ENSGALT00000039159 ArrayExpress:F1NN18
Uniprot:F1NN18
Length = 609
Score = 255 (94.8 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 52/108 (48%), Positives = 70/108 (64%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y KR E+ + + + +E +R EF F I +++E YQMLT GG A+LE
Sbjct: 430 YLKRVAELDDITNERDRFRQAFEDLRKQRLNEFMAGFNVITNKLKENYQMLTLGGDAELE 489
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 490 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 537
>UNIPROTKB|E9PD53 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0030261
"chromosome condensation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 EMBL:AC024221 HGNC:HGNC:14013
IPI:IPI00793575 ProteinModelPortal:E9PD53 SMR:E9PD53
Ensembl:ENST00000469762 UCSC:uc003fdi.3 ArrayExpress:E9PD53
Bgee:E9PD53 Uniprot:E9PD53
Length = 1263
Score = 259 (96.2 bits), Expect = 7.2e-21, P = 7.2e-21
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + +++ YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1078 YLQRVAELDKITYERDSFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1137
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1138 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1185
>UNIPROTKB|Q9NTJ3 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein
4" species:9606 "Homo sapiens" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IDA;TAS]
[GO:0007076 "mitotic chromosome condensation" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0000070 "mitotic sister
chromatid segregation" evidence=TAS] [GO:0005524 "ATP binding"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_115566 Reactome:REACT_21300
Pathway_Interaction_DB:aurora_b_pathway GO:GO:0051301 EMBL:CH471052
GO:GO:0006281 GO:GO:0006310 GO:GO:0007076 GO:GO:0000796
GO:GO:0007062 eggNOG:COG1196 KO:K06675 SUPFAM:SSF75553
EMBL:AC024221 OMA:IAIEFLT EMBL:AB019987 EMBL:AL136877 EMBL:AL833949
EMBL:AF092564 IPI:IPI00328298 IPI:IPI00411559 PIR:T46486
RefSeq:NP_001002800.1 RefSeq:NP_005487.3 UniGene:Hs.58992
ProteinModelPortal:Q9NTJ3 SMR:Q9NTJ3 IntAct:Q9NTJ3
MINT:MINT-5005675 STRING:Q9NTJ3 PhosphoSite:Q9NTJ3 DMDM:30173386
PaxDb:Q9NTJ3 PeptideAtlas:Q9NTJ3 PRIDE:Q9NTJ3 DNASU:10051
Ensembl:ENST00000344722 Ensembl:ENST00000357388
Ensembl:ENST00000360111 Ensembl:ENST00000462787 GeneID:10051
KEGG:hsa:10051 UCSC:uc003fdh.3 UCSC:uc010hwd.3 CTD:10051
GeneCards:GC03P160117 HGNC:HGNC:14013 HPA:HPA018259 HPA:HPA029449
MIM:605575 neXtProt:NX_Q9NTJ3 PharmGKB:PA37834 HOGENOM:HOG000184777
HOVERGEN:HBG106696 InParanoid:Q9NTJ3 OrthoDB:EOG4PZJ5V
PhylomeDB:Q9NTJ3 GenomeRNAi:10051 NextBio:37969 ArrayExpress:Q9NTJ3
Bgee:Q9NTJ3 CleanEx:HS_SMC4 Genevestigator:Q9NTJ3
GermOnline:ENSG00000113810 Uniprot:Q9NTJ3
Length = 1288
Score = 259 (96.2 bits), Expect = 7.4e-21, P = 7.4e-21
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + +++ YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1103 YLQRVAELDKITYERDSFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1162
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1163 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1210
>UNIPROTKB|E2RCX4 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
CTD:10051 EMBL:AAEX03017331 RefSeq:XP_535848.2
Ensembl:ENSCAFT00000022729 GeneID:478679 KEGG:cfa:478679
Uniprot:E2RCX4
Length = 1288
Score = 258 (95.9 bits), Expect = 9.5e-21, P = 9.5e-21
Identities = 52/108 (48%), Positives = 70/108 (64%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1103 YLQRVAELDKITCERDHFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELE 1162
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1163 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1210
>UNIPROTKB|P50532 [details] [associations]
symbol:smc4 "Structural maintenance of chromosomes protein
4" species:8355 "Xenopus laevis" [GO:0007076 "mitotic chromosome
condensation" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0005694 GO:GO:0051301 GO:GO:0006281 GO:GO:0006310
GO:GO:0046982 GO:GO:0007076 GO:GO:0007062 KO:K06675 SUPFAM:SSF75553
CTD:10051 HOVERGEN:HBG106696 EMBL:U13673 PIR:A55094
RefSeq:NP_001081371.1 UniGene:Xl.927 ProteinModelPortal:P50532
IntAct:P50532 GeneID:397799 KEGG:xla:397799 Xenbase:XB-GENE-5865892
Uniprot:P50532
Length = 1290
Score = 257 (95.5 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + +++ YE +R EF F I +++E YQMLT GG A+LE
Sbjct: 1097 YLQRVAELDEITNERDSFRRAYEDLRKQRLNEFMAGFNIITNKLKENYQMLTLGGDAELE 1156
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1157 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1204
>UNIPROTKB|E1BMZ9 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051383 "kinetochore organization" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0010032 "meiotic
chromosome condensation" evidence=IEA] [GO:0007076 "mitotic
chromosome condensation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 OMA:IAIEFLT
EMBL:DAAA02002417 EMBL:DAAA02002418 IPI:IPI00703154
Ensembl:ENSBTAT00000007705 ArrayExpress:E1BMZ9 Uniprot:E1BMZ9
Length = 1288
Score = 256 (95.2 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 51/108 (47%), Positives = 70/108 (64%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + + + YE +R EF F I +++E YQMLT GG A+L+
Sbjct: 1103 YLQRVAELDKITNERDNFRQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELD 1162
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1163 LVDSMDPFSEGITFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1210
>DICTYBASE|DDB_G0286403 [details] [associations]
symbol:smc4 "structural maintenance of chromosome
protein" species:44689 "Dictyostelium discoideum" [GO:0051276
"chromosome organization" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0046982 "protein heterodimerization activity" evidence=ISS]
[GO:0007076 "mitotic chromosome condensation" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000796 "condensin complex" evidence=ISS] [GO:0000070 "mitotic
sister chromatid segregation" evidence=ISS] [GO:0051301 "cell
division" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
dictyBase:DDB_G0286403 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0006281
GO:GO:0006310 GO:GO:0046982 EMBL:AAFI02000085 GO:GO:0007076
GO:GO:0000796 GO:GO:0007062 eggNOG:COG1196 KO:K06675
SUPFAM:SSF75553 HSSP:P32908 RefSeq:XP_637730.1
ProteinModelPortal:Q54LV0 STRING:Q54LV0 EnsemblProtists:DDB0219935
GeneID:8625595 KEGG:ddi:DDB_G0286403 OMA:QENFDEN Uniprot:Q54LV0
Length = 1415
Score = 256 (95.2 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 51/110 (46%), Positives = 68/110 (61%)
Query: 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD 141
++Y R E + + YE R EF F I +++E YQM+T GG A+
Sbjct: 1200 QEYHSRKAEFDEIEKERDNLSKRYESLRKNRLDEFMAGFTIITMKLKEIYQMITLGGDAE 1259
Query: 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
LE + DP+ +GI + VRPP+KSWK+I LSGGEKTL+SLALVFALH+Y
Sbjct: 1260 LEIIDREDPFQEGISFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHY 1309
>UNIPROTKB|F1NDN4 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 EMBL:AADN02021066
IPI:IPI00684483 Ensembl:ENSGALT00000032997 ArrayExpress:F1NDN4
Uniprot:F1NDN4
Length = 1274
Score = 255 (94.8 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 52/108 (48%), Positives = 70/108 (64%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y KR E+ + + + +E +R EF F I +++E YQMLT GG A+LE
Sbjct: 1074 YLKRVAELDDITNERDRFRQAFEDLRKQRLNEFMAGFNVITNKLKENYQMLTLGGDAELE 1133
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1134 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1181
>UNIPROTKB|F1P3C6 [details] [associations]
symbol:SMC4 "Structural maintenance of chromosomes protein"
species:9031 "Gallus gallus" [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0010032 "meiotic chromosome
condensation" evidence=IEA] [GO:0045132 "meiotic chromosome
segregation" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0051383 "kinetochore organization"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006281
GO:GO:0006310 GO:GO:0007076 GO:GO:0000796 GO:GO:0007062
GeneTree:ENSGT00580000081617 SUPFAM:SSF75553 OMA:IAIEFLT
EMBL:AADN02021066 IPI:IPI00573837 Ensembl:ENSGALT00000015551
ArrayExpress:F1P3C6 Uniprot:F1P3C6
Length = 1300
Score = 255 (94.8 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 52/108 (48%), Positives = 70/108 (64%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y KR E+ + + + +E +R EF F I +++E YQMLT GG A+LE
Sbjct: 1100 YLKRVAELDDITNERDRFRQAFEDLRKQRLNEFMAGFNVITNKLKENYQMLTLGGDAELE 1159
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH+Y
Sbjct: 1160 LVDSLDPFSEGIMFSVRPPKKSWKKIFNLSGGEKTLSSLALVFALHHY 1207
>ZFIN|ZDB-GENE-020419-21 [details] [associations]
symbol:smc4 "structural maintenance of chromosomes
4" species:7955 "Danio rerio" [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-020419-21 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 KO:K06675
SUPFAM:SSF75553 CTD:10051 HOGENOM:HOG000184777 HOVERGEN:HBG106696
HSSP:Q9X0R4 EMBL:AY099521 IPI:IPI00504040 RefSeq:NP_775360.1
UniGene:Dr.77769 ProteinModelPortal:Q8JGS5 STRING:Q8JGS5
PRIDE:Q8JGS5 GeneID:192332 KEGG:dre:192332 InParanoid:Q8JGS5
NextBio:20797168 ArrayExpress:Q8JGS5 Bgee:Q8JGS5 Uniprot:Q8JGS5
Length = 1289
Score = 250 (93.1 bits), Expect = 6.8e-20, P = 6.8e-20
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y +R E+ + +++ G E +R EF F I +++E YQMLT GG A+LE
Sbjct: 1102 YLQRVAELDDITTQRDSFKRGCEDLRKQRLHEFMAGFNIITNKLKENYQMLTLGGDAELE 1161
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + VRPP+KSWK I LSGGEKTL+SLALVFALH++
Sbjct: 1162 LVDSLDPFSEGIMFSVRPPKKSWKKIYNLSGGEKTLSSLALVFALHHF 1209
>ASPGD|ASPL0000075987 [details] [associations]
symbol:AN4597 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000796 "condensin complex" evidence=IEA] [GO:0000939
"condensed chromosome inner kinetochore" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 EMBL:BN001303
EMBL:AACD01000079 GO:GO:0007062 eggNOG:COG1196 KO:K06675
SUPFAM:SSF75553 OMA:IAIEFLT HOGENOM:HOG000184777 OrthoDB:EOG4WM82V
RefSeq:XP_662201.1 ProteinModelPortal:Q5B4D3 STRING:Q5B4D3
EnsemblFungi:CADANIAT00005839 GeneID:2872396 KEGG:ani:AN4597.2
Uniprot:Q5B4D3
Length = 1476
Score = 241 (89.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 50/109 (45%), Positives = 71/109 (65%)
Query: 83 DYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADL 142
++ RS ++ LA ++ + + S R F F I R++E YQM+T GG A+L
Sbjct: 1265 EHESRSADLATALAARDSAKSRLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGGNAEL 1324
Query: 143 EYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
E + DP+++GI + V PP+KSWK+I LSGGEKTL+SLALVFALH+Y
Sbjct: 1325 ELVDSLDPFSEGILFSVMPPKKSWKNIGNLSGGEKTLSSLALVFALHHY 1373
Score = 34 (17.0 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 50 SANTMAPASKWRSPVSGSDVTAAVRPTPELPVRD 83
S + A + S S+ V PTP P D
Sbjct: 10 SRRSAAARKSYVEETSESEDPGNVTPTPSYPDGD 43
>CGD|CAL0003745 [details] [associations]
symbol:SMC4 species:5476 "Candida albicans" [GO:0032116 "SMC
loading complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000939 "condensed chromosome inner kinetochore"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000799
"nuclear condensin complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007076 "mitotic chromosome condensation"
evidence=IEA] [GO:0070058 "tRNA gene clustering" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 CGD:CAL0003745
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 EMBL:AACQ01000063
EMBL:AACQ01000062 GO:GO:0007062 eggNOG:COG1196 KO:K06675
SUPFAM:SSF75553 RefSeq:XP_716802.1 RefSeq:XP_716862.1
ProteinModelPortal:Q5A4Y2 STRING:Q5A4Y2 GeneID:3641522
GeneID:3641578 KEGG:cal:CaO19.8579 KEGG:cal:CaO19.964
Uniprot:Q5A4Y2
Length = 1368
Score = 231 (86.4 bits), Expect = 7.7e-18, P = 7.7e-18
Identities = 51/108 (47%), Positives = 69/108 (63%)
Query: 86 KRSKEMQAVLA--TLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
K+S QAV + YC ++ KR EF F I +++ Y+M+T GG A+LE
Sbjct: 1191 KKSDLNQAVAERDSKKNYCDDLKR---KRLDEFMVGFNTISMTLKDMYRMITMGGNAELE 1247
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
+ DP+++GI + V PP+KSWK+I LSGGEKTL+SLALVFALH Y
Sbjct: 1248 LVDSLDPFSEGILFSVMPPKKSWKNISNLSGGEKTLSSLALVFALHKY 1295
>POMBASE|SPBC146.03c [details] [associations]
symbol:cut3 "condensin complex subunit Cut3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000796 "condensin
complex" evidence=IDA] [GO:0000939 "condensed chromosome inner
kinetochore" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0034613
"cellular protein localization" evidence=IMP] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 PomBase:SPBC146.03c Pfam:PF02463 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0034613 GO:GO:0051301
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0006310
GO:GO:0007076 GO:GO:0000939 GO:GO:0000796 GO:GO:0007062 KO:K06675
SUPFAM:SSF75553 OMA:IAIEFLT HOGENOM:HOG000184777 EMBL:D30788
EMBL:AB027959 PIR:S51622 RefSeq:NP_595392.1
ProteinModelPortal:P41004 DIP:DIP-35048N IntAct:P41004
STRING:P41004 EnsemblFungi:SPBC146.03c.1 GeneID:2539817
KEGG:spo:SPBC146.03c OrthoDB:EOG4WM82V NextBio:20800966
Uniprot:P41004
Length = 1324
Score = 228 (85.3 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 48/110 (43%), Positives = 68/110 (61%)
Query: 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD 141
++ KR + Q+ L S+R EF F I +++E YQ++T GG A+
Sbjct: 1140 KEAEKRDSDYQSELQKRTDLKKVVTDLQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAE 1199
Query: 142 LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
LE + DP+++G+ + V PP+KSWK+I LSGGEKTL+SLALVFALH Y
Sbjct: 1200 LELVDSLDPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFALHNY 1249
>WB|WBGene00004874 [details] [associations]
symbol:smc-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040039 "inductive cell migration" evidence=IMP] [GO:0007276
"gamete generation" evidence=IMP] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0000775 "chromosome, centromeric
region" evidence=IDA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0000775 GO:GO:0002119
GO:GO:0006281 GO:GO:0000910 GO:GO:0000070 GO:GO:0006310
GO:GO:0040035 GO:GO:0040039 GO:GO:0030261 GO:GO:0000793
GO:GO:0007276 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 EMBL:Z46242
PIR:T21809 RefSeq:NP_497935.1 ProteinModelPortal:Q20060 SMR:Q20060
IntAct:Q20060 STRING:Q20060 PaxDb:Q20060 EnsemblMetazoa:F35G12.8
GeneID:175603 KEGG:cel:CELE_F35G12.8 UCSC:F35G12.8 CTD:175603
WormBase:F35G12.8 HOGENOM:HOG000021360 InParanoid:Q20060
OMA:IAIEFLT NextBio:888868 Uniprot:Q20060
Length = 1549
Score = 226 (84.6 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 44/80 (55%), Positives = 58/80 (72%)
Query: 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDC 171
R +EF + F IGK + ++MLT GG A LEY + DP+ QGI ++VRP +K+WK I
Sbjct: 1218 RLEEFHSAFEFIGKHLVAVFKMLTDGGDAKLEYIDKDDPFRQGISFMVRPAKKAWKQIQF 1277
Query: 172 LSGGEKTLASLALVFALHYY 191
LSGGEKTL+SLAL+FALH +
Sbjct: 1278 LSGGEKTLSSLALIFALHMF 1297
>UNIPROTKB|Q20060 [details] [associations]
symbol:smc-4 "Structural maintenance of chromosomes protein
4" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0000775 GO:GO:0002119
GO:GO:0006281 GO:GO:0000910 GO:GO:0000070 GO:GO:0006310
GO:GO:0040035 GO:GO:0040039 GO:GO:0030261 GO:GO:0000793
GO:GO:0007276 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 EMBL:Z46242
PIR:T21809 RefSeq:NP_497935.1 ProteinModelPortal:Q20060 SMR:Q20060
IntAct:Q20060 STRING:Q20060 PaxDb:Q20060 EnsemblMetazoa:F35G12.8
GeneID:175603 KEGG:cel:CELE_F35G12.8 UCSC:F35G12.8 CTD:175603
WormBase:F35G12.8 HOGENOM:HOG000021360 InParanoid:Q20060
OMA:IAIEFLT NextBio:888868 Uniprot:Q20060
Length = 1549
Score = 226 (84.6 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 44/80 (55%), Positives = 58/80 (72%)
Query: 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDC 171
R +EF + F IGK + ++MLT GG A LEY + DP+ QGI ++VRP +K+WK I
Sbjct: 1218 RLEEFHSAFEFIGKHLVAVFKMLTDGGDAKLEYIDKDDPFRQGISFMVRPAKKAWKQIQF 1277
Query: 172 LSGGEKTLASLALVFALHYY 191
LSGGEKTL+SLAL+FALH +
Sbjct: 1278 LSGGEKTLSSLALIFALHMF 1297
>SGD|S000004076 [details] [associations]
symbol:SMC4 "Subunit of the condensin complex" species:4932
"Saccharomyces cerevisiae" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IGI;IDA]
[GO:0000070 "mitotic sister chromatid segregation" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0000799 "nuclear condensin complex" evidence=TAS;IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0070058
"tRNA gene clustering" evidence=IMP] [GO:0032116 "SMC loading
complex" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
SGD:S000004076 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0006281 GO:GO:0003682 EMBL:BK006945
GO:GO:0016887 GO:GO:0006310 GO:GO:0007076 EMBL:U53880 GO:GO:0000799
GO:GO:0070058 EMBL:Z73259 GO:GO:0007062 eggNOG:COG1196
GeneTree:ENSGT00580000081617 KO:K06675 SUPFAM:SSF75553 OMA:IAIEFLT
HOGENOM:HOG000184777 OrthoDB:EOG4WM82V EMBL:Z73258 PIR:S64918
RefSeq:NP_013187.1 ProteinModelPortal:Q12267 SMR:Q12267
DIP:DIP-3007N IntAct:Q12267 MINT:MINT-436885 STRING:Q12267
PaxDb:Q12267 EnsemblFungi:YLR086W GeneID:850775 KEGG:sce:YLR086W
CYGD:YLR086w NextBio:966951 Genevestigator:Q12267
GermOnline:YLR086W Uniprot:Q12267
Length = 1418
Score = 225 (84.3 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 44/81 (54%), Positives = 58/81 (71%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSID 170
KR EF F I ++E YQM+T GG A+LE + DP+++G+ + V PP+KSW++I
Sbjct: 1262 KRFDEFMAGFNIISMTLKEMYQMITMGGNAELELVDSLDPFSEGVTFSVMPPKKSWRNIT 1321
Query: 171 CLSGGEKTLASLALVFALHYY 191
LSGGEKTL+SLALVFALH Y
Sbjct: 1322 NLSGGEKTLSSLALVFALHKY 1342
>WB|WBGene00001086 [details] [associations]
symbol:dpy-27 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0016358 "dendrite development" evidence=IMP]
[GO:0042464 "dosage compensation by hypoactivation of X chromosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000228
"nuclear chromosome" evidence=IDA] [GO:0000805 "X chromosome"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046536 "dosage compensation complex"
evidence=IPI] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0043565 GO:GO:0006281
GO:GO:0016358 GO:GO:0010171 GO:GO:0040011 GO:GO:0006310
GO:GO:0030261 EMBL:Z35602 GO:GO:0000228 GO:GO:0000805 GO:GO:0042464
GO:GO:0007062 EMBL:L35274 PIR:T24216 RefSeq:NP_497771.1
ProteinModelPortal:P48996 SMR:P48996 IntAct:P48996 STRING:P48996
PaxDb:P48996 PRIDE:P48996 EnsemblMetazoa:R13G10.1 GeneID:175492
KEGG:cel:CELE_R13G10.1 UCSC:R13G10.1 CTD:175492 WormBase:R13G10.1
eggNOG:COG1196 GeneTree:ENSGT00580000081617 HOGENOM:HOG000021811
InParanoid:P48996 KO:K06675 OMA:FHKNLTM NextBio:888386
GO:GO:0046536 SUPFAM:SSF75553 Uniprot:P48996
Length = 1469
Score = 200 (75.5 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEY---SDPYAQGIKYVVRPPRKSWKS 168
R EF +G Q YQ++T GG A L++ E +DP+ GIK+ VRP +KSWK
Sbjct: 1182 RFNEFSEALAFLGTTTQMLYQLITNGGDASLKFVEEGKSTDPFDGGIKFSVRPAKKSWKL 1241
Query: 169 IDCLSGGEKTLASLALVFALHYY 191
I+ LSGGEKTLASL VFA+H+Y
Sbjct: 1242 IENLSGGEKTLASLCFVFAMHHY 1264
>UNIPROTKB|P48996 [details] [associations]
symbol:dpy-27 "Chromosome condensation protein dpy-27"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0043565 GO:GO:0006281
GO:GO:0016358 GO:GO:0010171 GO:GO:0040011 GO:GO:0006310
GO:GO:0030261 EMBL:Z35602 GO:GO:0000228 GO:GO:0000805 GO:GO:0042464
GO:GO:0007062 EMBL:L35274 PIR:T24216 RefSeq:NP_497771.1
ProteinModelPortal:P48996 SMR:P48996 IntAct:P48996 STRING:P48996
PaxDb:P48996 PRIDE:P48996 EnsemblMetazoa:R13G10.1 GeneID:175492
KEGG:cel:CELE_R13G10.1 UCSC:R13G10.1 CTD:175492 WormBase:R13G10.1
eggNOG:COG1196 GeneTree:ENSGT00580000081617 HOGENOM:HOG000021811
InParanoid:P48996 KO:K06675 OMA:FHKNLTM NextBio:888386
GO:GO:0046536 SUPFAM:SSF75553 Uniprot:P48996
Length = 1469
Score = 200 (75.5 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 112 RQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEY---SDPYAQGIKYVVRPPRKSWKS 168
R EF +G Q YQ++T GG A L++ E +DP+ GIK+ VRP +KSWK
Sbjct: 1182 RFNEFSEALAFLGTTTQMLYQLITNGGDASLKFVEEGKSTDPFDGGIKFSVRPAKKSWKL 1241
Query: 169 IDCLSGGEKTLASLALVFALHYY 191
I+ LSGGEKTLASL VFA+H+Y
Sbjct: 1242 IENLSGGEKTLASLCFVFAMHHY 1264
>ASPGD|ASPL0000036762 [details] [associations]
symbol:AN2963 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008278 "cohesin
complex" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
HOGENOM:HOG000195481 KO:K06636 OMA:NALVCET OrthoDB:EOG42VCQD
RefSeq:XP_660567.1 ProteinModelPortal:Q5B917 SMR:Q5B917
STRING:Q5B917 EnsemblFungi:CADANIAT00010118 GeneID:2874104
KEGG:ani:AN2963.2 Uniprot:Q5B917
Length = 1261
Score = 175 (66.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 36/93 (38%), Positives = 59/93 (63%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLT------FGGKADLEYKEYSDPYAQGIKYV 158
+E+ + +R + F+ F I +++ Y+ LT GG+A L+ ++ +PY GIKY
Sbjct: 1093 FEEVMRRRSELFNKAFSHISEQIGPIYRELTRSSNYPLGGQAYLDIEDSDEPYLDGIKYH 1152
Query: 159 VRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
PP K ++ ++ LSGGEKT+A+LAL+FA+H Y
Sbjct: 1153 AMPPLKRFRDMEHLSGGEKTMAALALLFAIHSY 1185
Score = 44 (20.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 82 RDYAKRSKEMQAVLATLNTYCTGYEQCLSKR 112
R+ KRSKE+++ L +N T ++ S R
Sbjct: 929 RELQKRSKEVESTLRFINGLETEIQRNSSSR 959
Score = 37 (18.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 67 SDVTAAVRPTPELPVRDYAKRSKEMQAV 94
S+ AA T + ++ K+ KE+ A+
Sbjct: 468 SERKAAANETVKTTSKEIEKKKKELNAI 495
>POMBASE|SPBC29A10.04 [details] [associations]
symbol:psm1 "mitotic cohesin complex subunit Psm1"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005694 "chromosome"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0007064 "mitotic sister
chromatid cohesion" evidence=IMP] [GO:0008278 "cohesin complex"
evidence=IDA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0030892 "mitotic cohesin complex" evidence=NAS] [GO:0046982
"protein heterodimerization activity" evidence=IPI]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
PomBase:SPBC29A10.04 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR
GO:GO:0006310 GO:GO:0030261 GO:GO:0007064 eggNOG:COG1196
SUPFAM:SSF75553 GO:GO:0030892 HOGENOM:HOG000195481 PIR:T40059
RefSeq:NP_596049.2 IntAct:O94383 STRING:O94383 PRIDE:O94383
GeneID:2540557 OrthoDB:EOG42VCQD NextBio:20801683 Uniprot:O94383
Length = 1228
Score = 168 (64.2 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 85 AKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT------FGG 138
AK +E A + KR ++F F I +++ Y+ LT GG
Sbjct: 1039 AKLDEEFAAARKAAKNAKERFNAVKQKRLQKFQAAFSHISEQIDPIYKELTKSPAFPLGG 1098
Query: 139 KADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GIK+ PP K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1099 TAYLTLDDLDEPYLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFAIHSY 1151
>UNIPROTKB|O93308 [details] [associations]
symbol:smc1a "Structural maintenance of chromosomes protein
1A" species:8355 "Xenopus laevis" [GO:0000075 "cell cycle
checkpoint" evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007126 "meiosis" evidence=ISS] [GO:0009314
"response to radiation" evidence=ISS] [GO:0030893 "meiotic cohesin
complex" evidence=ISS] [GO:0042770 "signal transduction in response
to DNA damage" evidence=ISS] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0000075 GO:GO:0007062 SUPFAM:SSF75553
GO:GO:0030893 HOVERGEN:HBG039593 EMBL:AF051784
RefSeq:NP_001165905.1 UniGene:Xl.4734 ProteinModelPortal:O93308
IntAct:O93308 GeneID:100379087 KEGG:xla:100379087 CTD:100379087
Uniprot:O93308
Length = 1232
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQTKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|O97593 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9913 "Bos taurus" [GO:0030893 "meiotic cohesin complex"
evidence=ISS] [GO:0007126 "meiosis" evidence=ISS] [GO:0009314
"response to radiation" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=ISS] [GO:0042770 "signal transduction in
response to DNA damage" evidence=ISS] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0036033 "mediator
complex binding" evidence=IEA] [GO:0032876 "negative regulation of
DNA endoreduplication" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0007126 GO:GO:0005737 GO:GO:0000776 GO:GO:0051301
GO:GO:0007067 GO:GO:0006281 GO:GO:0003682 GO:GO:0042770
GO:GO:0006310 GO:GO:0030261 GO:GO:0009314 GO:GO:0032876
GO:GO:0000075 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0030893 EMBL:AF072712 IPI:IPI00687474 PIR:S71602
RefSeq:NP_777039.1 UniGene:Bt.109789 ProteinModelPortal:O97593
STRING:O97593 PRIDE:O97593 GeneID:282370 KEGG:bta:282370 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 InParanoid:O97593 KO:K06636
OrthoDB:EOG4HX507 NextBio:20806162 Uniprot:O97593
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|E2QV07 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 CTD:8243 KO:K06636 OMA:NALVCET
GeneTree:ENSGT00580000081569 EMBL:AAEX03026385 RefSeq:XP_538049.3
Ensembl:ENSCAFT00000025795 GeneID:480928 KEGG:cfa:480928
Uniprot:E2QV07
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|Q14683 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes protein
1A" species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0036033 "mediator complex binding" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] [GO:0042770
"signal transduction in response to DNA damage" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0000075 "cell cycle
checkpoint" evidence=IDA] [GO:0009314 "response to radiation"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008280 "cohesin core heterodimer" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=TAS] [GO:0003777 "microtubule motor activity"
evidence=NAS] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=TAS] [GO:0000776 "kinetochore" evidence=IDA] [GO:0007126
"meiosis" evidence=ISS] [GO:0000070 "mitotic sister chromatid
segregation" evidence=TAS] [GO:0030893 "meiotic cohesin complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=TAS] [GO:0000087 "M phase of mitotic cell cycle"
evidence=TAS] [GO:0000236 "mitotic prometaphase" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=IMP] [GO:0007062
"sister chromatid cohesion" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0007126 GO:GO:0005737
Reactome:REACT_115566 GO:GO:0005654 Reactome:REACT_21300
GO:GO:0000776 GO:GO:0051301 GO:GO:0007052 GO:GO:0006281
Reactome:REACT_1675 GO:GO:0003682 GO:GO:0042770
Reactome:REACT_111183 GO:GO:0006310 GO:GO:0000794 GO:GO:0030261
GO:GO:0009314 GO:GO:0003777 GO:GO:0032876 GO:GO:0007091
GO:GO:0000398 GO:GO:0000075 GO:GO:0000236 GO:GO:0000777
GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553 EMBL:Z97054
Orphanet:199 EMBL:AL161779 GO:GO:0030893 GO:GO:0008280 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:S78271 EMBL:D80000 EMBL:BC112127 IPI:IPI00291939 PIR:I54383
RefSeq:NP_006297.2 UniGene:Hs.211602 ProteinModelPortal:Q14683
SMR:Q14683 DIP:DIP-30911N IntAct:Q14683 MINT:MINT-233274
STRING:Q14683 PhosphoSite:Q14683 DMDM:29336622 PaxDb:Q14683
PeptideAtlas:Q14683 PRIDE:Q14683 Ensembl:ENST00000322213
GeneID:8243 KEGG:hsa:8243 UCSC:uc004dsg.3 GeneCards:GC0XM053417
HGNC:HGNC:11111 HPA:CAB025404 HPA:HPA005499 MIM:300040 MIM:300590
neXtProt:NX_Q14683 PharmGKB:PA35961 InParanoid:Q14683 OMA:NALVCET
PhylomeDB:Q14683 ChiTaRS:SMC1A GenomeRNAi:8243 NextBio:31006
ArrayExpress:Q14683 Bgee:Q14683 CleanEx:HS_SMC1A
Genevestigator:Q14683 GermOnline:ENSG00000072501 Uniprot:Q14683
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|F2Z5A8 [details] [associations]
symbol:LOC100523938 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 KO:K06636 GeneTree:ENSGT00580000081569
EMBL:CU695116 EMBL:CU914655 EMBL:GACC01000120 RefSeq:XP_003135172.3
Ensembl:ENSSSCT00000013478 GeneID:100523938 KEGG:ssc:100523938
Uniprot:F2Z5A8
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>MGI|MGI:1344345 [details] [associations]
symbol:Smc1a "structural maintenance of chromosomes 1A"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=ISO]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO;IPI] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0030893
"meiotic cohesin complex" evidence=ISO;IDA] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=ISO] [GO:0036033
"mediator complex binding" evidence=IDA] [GO:0042770 "signal
transduction in response to DNA damage" evidence=ISO] [GO:0046982
"protein heterodimerization activity" evidence=ISO] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
MGI:MGI:1344345 GO:GO:0005524 GO:GO:0007126 GO:GO:0005737
GO:GO:0005654 GO:GO:0000776 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0003682 GO:GO:0042770 Reactome:REACT_118161
Reactome:REACT_120463 Reactome:REACT_75800 GO:GO:0006310
GO:GO:0030261 GO:GO:0009314 GO:GO:0032876 GO:GO:0019827
GO:GO:0000075 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
EMBL:AL672180 GO:GO:0036033 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AF047600 EMBL:BC131667 EMBL:AK007334 EMBL:AK013648
EMBL:AK017948 EMBL:AK088183 IPI:IPI00123870 RefSeq:NP_062684.2
UniGene:Mm.482095 PDB:2WD5 PDBsum:2WD5 ProteinModelPortal:Q9CU62
SMR:Q9CU62 DIP:DIP-57021N IntAct:Q9CU62 STRING:Q9CU62
PhosphoSite:Q9CU62 PaxDb:Q9CU62 PRIDE:Q9CU62
Ensembl:ENSMUST00000045312 GeneID:24061 KEGG:mmu:24061
GeneTree:ENSGT00580000081569 InParanoid:A2AFQ5
EvolutionaryTrace:Q9CU62 NextBio:304025 Bgee:Q9CU62
CleanEx:MM_SMC1A Genevestigator:Q9CU62
GermOnline:ENSMUSG00000041133 Uniprot:Q9CU62
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>RGD|61991 [details] [associations]
symbol:Smc1a "structural maintenance of chromosomes 1A"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO;ISS] [GO:0000776 "kinetochore"
evidence=ISO;ISS] [GO:0003682 "chromatin binding" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA;ISO]
[GO:0007067 "mitosis" evidence=IEA] [GO:0007126 "meiosis"
evidence=ISO;IDA] [GO:0009314 "response to radiation"
evidence=ISO;ISS] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0030893
"meiotic cohesin complex" evidence=ISO;ISS] [GO:0032876 "negative
regulation of DNA endoreduplication" evidence=ISO] [GO:0036033
"mediator complex binding" evidence=ISO] [GO:0042770 "signal
transduction in response to DNA damage" evidence=ISO;ISS]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051301 "cell division" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:61991 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126 GO:GO:0005737
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0032876 GO:GO:0000075 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AJ005113 IPI:IPI00209018 RefSeq:NP_113871.1 UniGene:Rn.11763
ProteinModelPortal:Q9Z1M9 STRING:Q9Z1M9 PhosphoSite:Q9Z1M9
PRIDE:Q9Z1M9 GeneID:63996 KEGG:rno:63996 NextBio:612558
ArrayExpress:Q9Z1M9 Genevestigator:Q9Z1M9 Uniprot:Q9Z1M9
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|Q9Z1M9 [details] [associations]
symbol:Smc1a "Structural maintenance of chromosomes protein
1A" species:10116 "Rattus norvegicus" [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
RGD:61991 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126 GO:GO:0005737
GO:GO:0000776 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0003682 GO:GO:0042770 GO:GO:0006310 GO:GO:0030261
GO:GO:0009314 GO:GO:0032876 GO:GO:0000075 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0030893 CTD:8243
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
EMBL:AJ005113 IPI:IPI00209018 RefSeq:NP_113871.1 UniGene:Rn.11763
ProteinModelPortal:Q9Z1M9 STRING:Q9Z1M9 PhosphoSite:Q9Z1M9
PRIDE:Q9Z1M9 GeneID:63996 KEGG:rno:63996 NextBio:612558
ArrayExpress:Q9Z1M9 Genevestigator:Q9Z1M9 Uniprot:Q9Z1M9
Length = 1233
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|I3LMC6 [details] [associations]
symbol:LOC100523938 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 OMA:NALVCET GeneTree:ENSGT00580000081569
EMBL:CU695116 EMBL:CU914655 Ensembl:ENSSSCT00000028659
Uniprot:I3LMC6
Length = 1235
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1036 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1095
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1096 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1149
Score = 34 (17.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>ZFIN|ZDB-GENE-090506-9 [details] [associations]
symbol:smc1a "structural maintenance of chromosomes
1A" species:7955 "Danio rerio" [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-090506-9 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 CTD:8243 KO:K06636 GeneTree:ENSGT00580000081569
EMBL:CR354431 IPI:IPI00506664 RefSeq:NP_001155103.1
UniGene:Dr.120420 Ensembl:ENSDART00000078148 GeneID:559665
KEGG:dre:559665 OMA:ERIRHAN NextBio:20883076 Uniprot:E7F0X6
Length = 1232
Score = 156 (60.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1147
>CGD|CAL0001080 [details] [associations]
symbol:SMC1 species:5476 "Candida albicans" [GO:0034990
"nuclear mitotic cohesin complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0003680 "AT DNA
binding" evidence=IEA] [GO:0000217 "DNA secondary structure
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 CGD:CAL0001080
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
EMBL:AACQ01000091 EMBL:AACQ01000090 eggNOG:COG1196 SUPFAM:SSF75553
KO:K06636 RefSeq:XP_715092.1 RefSeq:XP_715143.1
ProteinModelPortal:Q5A021 SMR:Q5A021 STRING:Q5A021 GeneID:3643221
GeneID:3643229 KEGG:cal:CaO19.11845 KEGG:cal:CaO19.4367
Uniprot:Q5A021
Length = 1240
Score = 155 (59.6 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLT------FGGKADLEYKEYSDPYAQGIKYV 158
+++ KR +F F I + Y+ LT GG A L ++ P+ GIKY
Sbjct: 1059 FKKVQEKRYDKFMDAFNHISGCIDSIYKELTKSAMSPLGGSAYLTLEDEDSPFLSGIKYH 1118
Query: 159 VRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
PP K ++ ++ LSGGEKT+A+LAL+FA+H Y
Sbjct: 1119 AMPPMKRFRDMELLSGGEKTMAALALLFAIHSY 1151
>ZFIN|ZDB-GENE-040426-57 [details] [associations]
symbol:smc1al "structural maintenance of chromosomes
1A, like" species:7955 "Danio rerio" [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
ZFIN:ZDB-GENE-040426-57 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000195481
HOVERGEN:HBG039593 KO:K06636 OrthoDB:EOG4HX507
GeneTree:ENSGT00580000081569 EMBL:CR376802 EMBL:CT025883
EMBL:AY648730 IPI:IPI00501499 RefSeq:NP_997975.2 UniGene:Dr.76942
STRING:Q6DRM9 Ensembl:ENSDART00000081016 GeneID:403060
KEGG:dre:403060 CTD:403060 InParanoid:Q6DRM9 OMA:NIGEVAN
NextBio:20816857 Uniprot:Q6DRM9
Length = 1233
Score = 154 (59.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 39/114 (34%), Positives = 57/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F F + + E Y+ L+
Sbjct: 1035 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFHACFESVATNIDEIYKALSRNSS 1094
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSGGEKT+A+LAL+FA+H Y
Sbjct: 1095 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1148
>SGD|S000001886 [details] [associations]
symbol:SMC1 "Subunit of the multiprotein cohesin complex"
species:4932 "Saccharomyces cerevisiae" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0034990 "nuclear mitotic cohesin complex"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0000217 "DNA secondary structure binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0003680 "AT DNA
binding" evidence=IDA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0030261 "chromosome condensation"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 SGD:S000001886
Pfam:PF02463 GO:GO:0005524 GO:GO:0051301 EMBL:D50617 EMBL:BK006940
GO:GO:0016887 GO:GO:0006310 GO:GO:0003690 GO:GO:0006302
GO:GO:0030261 GO:GO:0003680 GO:GO:0007064 eggNOG:COG1196
SUPFAM:SSF75553 PDB:1W1W PDBsum:1W1W GO:GO:0034990
HOGENOM:HOG000195481 KO:K06636 OMA:NALVCET
GeneTree:ENSGT00580000081569 OrthoDB:EOG42VCQD EMBL:L00602
PIR:A49464 RefSeq:NP_116647.1 ProteinModelPortal:P32908 SMR:P32908
DIP:DIP-2982N IntAct:P32908 MINT:MINT-434606 STRING:P32908
PaxDb:P32908 PeptideAtlas:P32908 EnsemblFungi:YFL008W GeneID:850540
KEGG:sce:YFL008W CYGD:YFL008w EvolutionaryTrace:P32908
NextBio:966301 Genevestigator:P32908 GermOnline:YFL008W
GO:GO:0000217 Uniprot:P32908
Length = 1225
Score = 149 (57.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 35/93 (37%), Positives = 54/93 (58%)
Query: 109 LSKRQKE-FDTNFVKIGKRVQECYQMLT---------FGGKADLEYKEYSDPYAQGIKYV 158
+ K++KE F+ F + + Y+ LT GG A L ++ +P+ GIKY
Sbjct: 1056 IKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYH 1115
Query: 159 VRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
PP K +K ++ LSGGEKT+A+LAL+FA++ Y
Sbjct: 1116 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSY 1148
>UNIPROTKB|G3X7C0 [details] [associations]
symbol:SMC1A "Structural maintenance of chromosomes
protein" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042770 "signal transduction in response to DNA
damage" evidence=IEA] [GO:0036033 "mediator complex binding"
evidence=IEA] [GO:0032876 "negative regulation of DNA
endoreduplication" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0009314 "response to radiation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0000776 GO:GO:0006281 GO:GO:0003682 GO:GO:0042770
GO:GO:0006310 GO:GO:0030261 GO:GO:0009314 GO:GO:0032876
GO:GO:0000075 GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
OMA:NALVCET GeneTree:ENSGT00580000081569 EMBL:DAAA02073280
EMBL:DAAA02073281 Ensembl:ENSBTAT00000023619 Uniprot:G3X7C0
Length = 1232
Score = 141 (54.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 38/114 (33%), Positives = 57/114 (50%)
Query: 81 VRD-YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGK 139
VRD + + S E +A +EQ +R F+ F + + E Y+ L+
Sbjct: 1034 VRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSS 1093
Query: 140 AD--LEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
A L + +PY GI Y P K ++ +D LSG EKT+A+LAL+FA+H Y
Sbjct: 1094 AQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSG-EKTVAALALLFAIHSY 1146
Score = 34 (17.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 61 RSPVSGSDVTAAVRPTPELPVRDYAKRSKEM 91
++P + + + + EL ++Y KR KEM
Sbjct: 146 KNPKERTALFEEISRSGEL-AQEYDKRKKEM 175
>UNIPROTKB|P51834 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0030261 GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553
EMBL:D64116 EMBL:D49781 PIR:G69708 RefSeq:NP_389476.2
ProteinModelPortal:P51834 SMR:P51834 IntAct:P51834
EnsemblBacteria:EBBACT00000001044 GeneID:938085 KEGG:bsu:BSU15940
PATRIC:18974993 GenoList:BSU15940 HOGENOM:HOG000036392 KO:K03529
ProtClustDB:CLSK2765274 BioCyc:BSUB:BSU15940-MONOMER
TIGRFAMs:TIGR02168 Uniprot:P51834
Length = 1186
Score = 140 (54.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 84 YAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLE 143
Y S++ + + NT E+ + K F+ FV+I + ++ L GG+A+L
Sbjct: 1001 YKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELR 1060
Query: 144 YKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
+ +D G++ + +PP K ++++ LSGGE+ L ++AL+F++
Sbjct: 1061 LTDPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSI 1105
>DICTYBASE|DDB_G0291752 [details] [associations]
symbol:smc1 "structural maintenance of chromosome
protein" species:44689 "Dictyostelium discoideum" [GO:0051276
"chromosome organization" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=ISS] [GO:0042770
"signal transduction in response to DNA damage" evidence=ISS]
[GO:0008280 "cohesin core heterodimer" evidence=ISS] [GO:0007064
"mitotic sister chromatid cohesion" evidence=ISS] [GO:0007052
"mitotic spindle organization" evidence=ISS] [GO:0003777
"microtubule motor activity" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0000075 "cell cycle checkpoint"
evidence=ISS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 dictyBase:DDB_G0291752 Pfam:PF02463
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0007052
GO:GO:0006281 GO:GO:0003682 EMBL:AAFI02000182 GO:GO:0042770
GO:GO:0006310 GO:GO:0046982 GO:GO:0030261 GO:GO:0003777
GO:GO:0000075 GO:GO:0007064 eggNOG:COG1196 SUPFAM:SSF75553
GO:GO:0008280 KO:K06636 OMA:NALVCET RefSeq:XP_629977.1
ProteinModelPortal:Q54E85 STRING:Q54E85 EnsemblProtists:DDB0219931
GeneID:8628307 KEGG:ddi:DDB_G0291752 InParanoid:Q54E85
Uniprot:Q54E85
Length = 1373
Score = 139 (54.0 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 81 VRDYAKR-SKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT---- 135
V D K+ KE+ T + + +R++ F F +I K + Y LT
Sbjct: 1145 VSDKLKKVRKELNQARDNAKTKIDSFNRVRDQRKQLFLRAFKRIAKNLTSIYSELTRELE 1204
Query: 136 ---FGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALH 189
G A L ++ +P+ G+++ V PP K ++ +D LSGGEK++A+LA +F+ H
Sbjct: 1205 PPYHRGSAHLALEDTENPFNSGVRFTVIPPNKRFQEMDQLSGGEKSVAALAFLFSTH 1261
>TIGR_CMR|GSU_1130 [details] [associations]
symbol:GSU_1130 "chromosome segregation SMC protein,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GenomeReviews:AE017180_GR GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 HOGENOM:HOG000036392 TIGRFAMs:TIGR02168 HSSP:Q9X0R4
EMBL:AJ543647 ProteinModelPortal:Q84EX7 PATRIC:22025022
ProtClustDB:CLSK924468 Uniprot:Q84EX7
Length = 1175
Score = 138 (53.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 72 AVRPTPELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECY 131
A+ EL R +A S + + +L + ++ +K F F + ++ QE +
Sbjct: 986 AIEEYRELEER-FAFLSSQKDDLEESLQSLQQAIQRINRTTRKRFLETFTLVNEKFQEVF 1044
Query: 132 QMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
L GG+A+L D GI +V+PP K +++ LSGGEK L ++AL+F++
Sbjct: 1045 PRLFCGGRAELRLTNEEDLLETGIDIIVQPPGKKLQNVTLLSGGEKALTAVALIFSI 1101
>WB|WBGene00001860 [details] [associations]
symbol:him-1 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0008278 "cohesin
complex" evidence=ISS;IPI] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0009411 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0000790 GO:GO:0006310
GO:GO:0040035 GO:GO:0030261 GO:GO:0010165 GO:GO:0007064
GO:GO:0008278 eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000195481
KO:K06636 OMA:NALVCET GeneTree:ENSGT00580000081569 EMBL:FO081198
RefSeq:NP_001040658.2 UniGene:Cel.5375 ProteinModelPortal:O01789
SMR:O01789 STRING:O01789 PaxDb:O01789 EnsemblMetazoa:F28B3.7a.1
EnsemblMetazoa:F28B3.7a.2 GeneID:172116 KEGG:cel:CELE_F28B3.7
UCSC:F28B3.7a.1 CTD:172116 WormBase:F28B3.7a InParanoid:O01789
NextBio:874073 ArrayExpress:O01789 Uniprot:O01789
Length = 1262
Score = 137 (53.3 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 34/114 (29%), Positives = 60/114 (52%)
Query: 78 ELPVRDYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT-- 135
E+ R+ A+ ++E++ +E+ + R + F F + + + Y+ L+
Sbjct: 1053 EVKERE-AESTEELENARKKAKRIRQQFEKVKTDRYRRFQDFFDPVANTIDDIYKQLSRN 1111
Query: 136 FGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALH 189
+A L +PY GI+Y P K ++ +D LSGGEKT+A+LAL+FA+H
Sbjct: 1112 TSAQAFLGADNMEEPYLDGIQYNCVAPGKRFRPMDNLSGGEKTIAALALLFAVH 1165
>UNIPROTKB|Q5LNH7 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 PIRSF:PIRSF005719 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0003824 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553 KO:K03529
RefSeq:YP_168431.1 ProteinModelPortal:Q5LNH7 GeneID:3194939
KEGG:sil:SPO3228 PATRIC:23379903 HOGENOM:HOG000036390 OMA:AHERVQA
ProtClustDB:CLSK864767 Uniprot:Q5LNH7
Length = 1151
Score = 130 (50.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 83 DYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADL 142
++ SKE + + T +G + ++ T F ++ ++ L GG+A+L
Sbjct: 963 EFDSLSKEKSDLEEAVKTLRSGIASLNREGRERLLTAFEQVNSNFAMLFRHLFGGGEANL 1022
Query: 143 EYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
E DP G++ + +PP K ++ LSGGE+TL ++AL+FA+
Sbjct: 1023 VMVESDDPLDAGLEIMCQPPGKKLSTLSLLSGGEQTLTAMALIFAV 1068
>TIGR_CMR|SPO_3228 [details] [associations]
symbol:SPO_3228 "SMC protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS]
InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 PIRSF:PIRSF005719 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0003824 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553 KO:K03529
RefSeq:YP_168431.1 ProteinModelPortal:Q5LNH7 GeneID:3194939
KEGG:sil:SPO3228 PATRIC:23379903 HOGENOM:HOG000036390 OMA:AHERVQA
ProtClustDB:CLSK864767 Uniprot:Q5LNH7
Length = 1151
Score = 130 (50.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 83 DYAKRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADL 142
++ SKE + + T +G + ++ T F ++ ++ L GG+A+L
Sbjct: 963 EFDSLSKEKSDLEEAVKTLRSGIASLNREGRERLLTAFEQVNSNFAMLFRHLFGGGEANL 1022
Query: 143 EYKEYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
E DP G++ + +PP K ++ LSGGE+TL ++AL+FA+
Sbjct: 1023 VMVESDDPLDAGLEIMCQPPGKKLSTLSLLSGGEQTLTAMALIFAV 1068
>TIGR_CMR|BA_3986 [details] [associations]
symbol:BA_3986 "chromosome segregation SMC protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006310 GO:GO:0030261 GO:GO:0007062 SUPFAM:SSF75553
OMA:CQNGKIP HOGENOM:HOG000036392 KO:K03529 TIGRFAMs:TIGR02168
HSSP:Q9X0R4 RefSeq:NP_846228.1 RefSeq:YP_020625.1
RefSeq:YP_029950.1 ProteinModelPortal:Q81WI9 IntAct:Q81WI9
DNASU:1086762 EnsemblBacteria:EBBACT00000012710
EnsemblBacteria:EBBACT00000015269 EnsemblBacteria:EBBACT00000024406
GeneID:1086762 GeneID:2817444 GeneID:2848221 KEGG:ban:BA_3986
KEGG:bar:GBAA_3986 KEGG:bat:BAS3699 ProtClustDB:CLSK873325
BioCyc:BANT260799:GJAJ-3757-MONOMER
BioCyc:BANT261594:GJ7F-3874-MONOMER Uniprot:Q81WI9
Length = 1189
Score = 130 (50.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 86 KRSKEMQAVLATLNTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYK 145
++ +++ TL+ T ++ + KR F T F I Q + L GG+ADL
Sbjct: 1007 EQKDDLEEAKTTLHQLITEMDEEMKKR---FSTTFEGIRMEFQSVFSELFGGGRADLVMT 1063
Query: 146 EYSDPYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFAL 188
D GI V +PP K +++ LSGGE+ L ++AL+F +
Sbjct: 1064 NPEDLLNTGIDIVAQPPGKKLQNLGLLSGGERALTAIALLFGI 1106
>UNIPROTKB|F6V533 [details] [associations]
symbol:SMC1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00580000081569 EMBL:AAEX03007228
EMBL:AAEX03007229 EMBL:AAEX03007230 Ensembl:ENSCAFT00000001296
Uniprot:F6V533
Length = 1079
Score = 129 (50.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQML--TFGGKADLEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F + + E Y+ L +A L + +PY +GI Y P
Sbjct: 894 FEQVKKRRYDLFSQCFEHVSISIDEIYKKLCRNVSAQAFLSPENPEEPYLEGISYNCVAP 953
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 954 GKRFMPMDNLSGGEKCVAALALLFAVHSF 982
>UNIPROTKB|E2QRT5 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030261 "chromosome condensation"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 SUPFAM:SSF75553 KO:K06636
GeneTree:ENSGT00580000081569 CTD:27127 OMA:QLYHNEK
EMBL:AAEX03007228 EMBL:AAEX03007229 EMBL:AAEX03007230
RefSeq:XP_538328.2 Ensembl:ENSCAFT00000001296
Ensembl:ENSCAFT00000049571 GeneID:481207 KEGG:cfa:481207
NextBio:20856062 Uniprot:E2QRT5
Length = 1235
Score = 129 (50.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQML--TFGGKADLEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F + + E Y+ L +A L + +PY +GI Y P
Sbjct: 1055 FEQVKKRRYDLFSQCFEHVSISIDEIYKKLCRNVSAQAFLSPENPEEPYLEGISYNCVAP 1114
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1115 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1143
>UNIPROTKB|F1N6C8 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9913 "Bos taurus" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
GeneTree:ENSGT00580000081569 OMA:QLYHNEK EMBL:DAAA02014929
EMBL:DAAA02014930 IPI:IPI00697785 ProteinModelPortal:F1N6C8
PRIDE:F1N6C8 Ensembl:ENSBTAT00000014005 Uniprot:F1N6C8
Length = 1235
Score = 127 (49.8 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F+ F I + + Y+ L A L + +PY +GI Y P
Sbjct: 1061 FEQVKKRRYDLFNQCFEHISISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNCVAP 1120
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1121 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1149
>UNIPROTKB|F1SM58 [details] [associations]
symbol:F1SM58 "Structural maintenance of chromosomes
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030893 "meiotic cohesin complex" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR024704 PIRSF:PIRSF005719 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005634 GO:GO:0006281 GO:GO:0006310
GO:GO:0030261 GO:GO:0007062 GeneTree:ENSGT00580000081569
EMBL:CU856016 EMBL:CU633534 Ensembl:ENSSSCT00000000014
Uniprot:F1SM58
Length = 1233
Score = 126 (49.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F + + + Y+ L A L + +PY +GI Y P
Sbjct: 1053 FEQVKKRRYDLFSQCFEHVSVSIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNCVAP 1112
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1113 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1141
>RGD|1308791 [details] [associations]
symbol:Smc1b "structural maintenance of chromosomes 1B"
species:10116 "Rattus norvegicus" [GO:0000775 "chromosome,
centromeric region" evidence=IEA;ISO] [GO:0000795 "synaptonemal
complex" evidence=ISO] [GO:0000800 "lateral element"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA;ISO]
[GO:0007126 "meiosis" evidence=IEA;ISO] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0030893 "meiotic cohesin complex"
evidence=ISO] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA;ISO] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 RGD:1308791 GO:GO:0005524 GO:GO:0007126 GO:GO:0000775
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0000800 EMBL:CH473950 GO:GO:0007062 SUPFAM:SSF75553
GO:GO:0030893 KO:K06636 GeneTree:ENSGT00580000081569 CTD:27127
OMA:QLYHNEK OrthoDB:EOG4RNB7M IPI:IPI00372956 RefSeq:NP_001123970.1
UniGene:Rn.56972 Ensembl:ENSRNOT00000044883 GeneID:300121
KEGG:rno:300121 NextBio:646377 Uniprot:D3ZE73
Length = 1247
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F I + + Y+ L A L + +PY GI Y P
Sbjct: 1054 FEQVKRRRYDAFSQCFEHISVSIDQIYKKLCRNNSAQAFLSPENPEEPYLDGISYNCVAP 1113
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1114 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1142
>MGI|MGI:2154049 [details] [associations]
symbol:Smc1b "structural maintenance of chromosomes 1B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IDA] [GO:0000795 "synaptonemal complex" evidence=IDA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IDA] [GO:0007126 "meiosis"
evidence=IPI] [GO:0030261 "chromosome condensation" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISO;IDA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IEA] InterPro:IPR024704
InterPro:IPR010935 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 MGI:MGI:2154049 GO:GO:0005524
GO:GO:0007126 GO:GO:0005654 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 GO:GO:0034991
HOGENOM:HOG000195481 HOVERGEN:HBG039593 KO:K06636
GeneTree:ENSGT00580000081569 CTD:27127 OMA:QLYHNEK EMBL:AF303827
IPI:IPI00120490 RefSeq:NP_536718.1 UniGene:Mm.182737
ProteinModelPortal:Q920F6 SMR:Q920F6 STRING:Q920F6
PhosphoSite:Q920F6 PaxDb:Q920F6 PRIDE:Q920F6
Ensembl:ENSMUST00000023068 GeneID:140557 KEGG:mmu:140557
InParanoid:Q920F6 OrthoDB:EOG4RNB7M NextBio:369861 Bgee:Q920F6
CleanEx:MM_SMC1B Genevestigator:Q920F6
GermOnline:ENSMUSG00000022432 Uniprot:Q920F6
Length = 1248
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F I + + Y+ L A L + +PY GI Y P
Sbjct: 1054 FEQVKRRRYDAFSQCFEHISVSIDQIYKKLCRNNSAQAFLSPENPEEPYLDGISYNCVAP 1113
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1114 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1142
>UNIPROTKB|Q8NDV3 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes protein
1B" species:9606 "Homo sapiens" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 Reactome:REACT_115566 GO:GO:0000775
GO:GO:0003677 GO:GO:0006281 Reactome:REACT_111183 GO:GO:0006310
GO:GO:0030261 GO:GO:0000800 GO:GO:0007062 eggNOG:COG1196
SUPFAM:SSF75553 EMBL:AL008718 EMBL:AL021391 GO:GO:0030893
HOVERGEN:HBG039593 KO:K06636 EMBL:AJ504806 EMBL:BC126208
EMBL:AK125736 IPI:IPI00479260 IPI:IPI00807400 IPI:IPI00893258
RefSeq:NP_683515.3 UniGene:Hs.334176 ProteinModelPortal:Q8NDV3
SMR:Q8NDV3 STRING:Q8NDV3 PhosphoSite:Q8NDV3 DMDM:57015410
PaxDb:Q8NDV3 PRIDE:Q8NDV3 Ensembl:ENST00000357450
Ensembl:ENST00000404354 GeneID:27127 KEGG:hsa:27127 UCSC:uc003bgc.3
UCSC:uc003bgd.3 CTD:27127 GeneCards:GC22M045739 H-InvDB:HIX0027884
HGNC:HGNC:11112 HPA:HPA001500 MIM:608685 neXtProt:NX_Q8NDV3
PharmGKB:PA35962 OMA:QLYHNEK GenomeRNAi:27127 NextBio:49836
Bgee:Q8NDV3 CleanEx:HS_SMC1B Genevestigator:Q8NDV3
GermOnline:ENSG00000077935 Uniprot:Q8NDV3
Length = 1235
Score = 124 (48.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+EQ +R F F + + + Y+ L A L + +PY +GI Y P
Sbjct: 1055 FEQVKKRRYDLFTQCFEHVSISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNCVAP 1114
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEK +A+LAL+FA+H +
Sbjct: 1115 GKRFMPMDNLSGGEKCVAALALLFAVHSF 1143
>UNIPROTKB|F1NX72 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0007062 "sister chromatid cohesion" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR024704 InterPro:IPR010935
Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 GeneTree:ENSGT00580000081569 EMBL:AADN02006734
IPI:IPI00577909 Ensembl:ENSGALT00000023006 Uniprot:F1NX72
Length = 1234
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+E+ +R + F F + + Y+ L A L + +PY +GI + P
Sbjct: 1054 FEEVKKRRYELFSQCFEHASIVIDQVYKKLCRNSSAQAFLSPENPEEPYLEGIGFNCVAP 1113
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEKT+A+LAL+FA+H +
Sbjct: 1114 GKRFMPMDSLSGGEKTVAALALIFAVHSF 1142
>UNIPROTKB|F1NX73 [details] [associations]
symbol:SMC1B "Structural maintenance of chromosomes
protein" species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] InterPro:IPR024704 InterPro:IPR010935 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0007126 GO:GO:0000775 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0030261 GO:GO:0000800
GO:GO:0007062 SUPFAM:SSF75553 GO:GO:0030893
GeneTree:ENSGT00580000081569 OMA:QLYHNEK EMBL:AADN02006734
IPI:IPI00572844 Ensembl:ENSGALT00000023005 Uniprot:F1NX73
Length = 1238
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKAD--LEYKEYSDPYAQGIKYVVRPP 162
+E+ +R + F F + + Y+ L A L + +PY +GI + P
Sbjct: 1058 FEEVKKRRYELFSQCFEHASIVIDQVYKKLCRNSSAQAFLSPENPEEPYLEGIGFNCVAP 1117
Query: 163 RKSWKSIDCLSGGEKTLASLALVFALHYY 191
K + +D LSGGEKT+A+LAL+FA+H +
Sbjct: 1118 GKRFMPMDSLSGGEKTVAALALIFAVHSF 1146
>TIGR_CMR|CHY_1443 [details] [associations]
symbol:CHY_1443 "chromosome segregation protein SMC"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0030261 "chromosome condensation"
evidence=ISS] InterPro:IPR024704 HAMAP:MF_01894 InterPro:IPR010935
InterPro:IPR011890 Pfam:PF06470 PIRSF:PIRSF005719 SMART:SM00968
InterPro:IPR003395 Pfam:PF02463 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 GO:GO:0030261
GO:GO:0007062 eggNOG:COG1196 SUPFAM:SSF75553 HOGENOM:HOG000036392
KO:K03529 TIGRFAMs:TIGR02168 OMA:GDITKFI RefSeq:YP_360275.1
ProteinModelPortal:Q3AC59 STRING:Q3AC59 GeneID:3728135
KEGG:chy:CHY_1443 PATRIC:21276017
BioCyc:CHYD246194:GJCN-1442-MONOMER Uniprot:Q3AC59
Length = 1185
Score = 120 (47.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 106 EQCLSKRQKEFDTNFVKIGKRVQECYQML---TFGG-KADLEYKEYSDPYAQGIKYVVRP 161
E+ LS+ +E + F + K + E Y ++ FGG +A LE K + +GI+ +V
Sbjct: 1022 EKLLSQLTEEMEQRFNEFLKLLNEEYDLVFKELFGGGRAALE-KVVGEDQKEGIEIIVEL 1080
Query: 162 PRKSWKSIDCLSGGEKTLASLALVFAL 188
P K + + LSGGE+ LAS+AL+FAL
Sbjct: 1081 PGKKRQPLGLLSGGERALASIALLFAL 1107
>UNIPROTKB|Q97QG7 [details] [associations]
symbol:smc "Chromosome partition protein Smc"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR024704 HAMAP:MF_01894
InterPro:IPR010935 InterPro:IPR011890 Pfam:PF06470
PIRSF:PIRSF005719 SMART:SM00968 InterPro:IPR003395 Pfam:PF02463
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006310 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0030261 GO:GO:0007062
SUPFAM:SSF75553 HOGENOM:HOG000036392 KO:K03529 TIGRFAMs:TIGR02168
HSSP:Q9X0R4 OMA:GDITKFI PIR:G95144 RefSeq:NP_345712.1
ProteinModelPortal:Q97QG7 EnsemblBacteria:EBSTRT00000025640
GeneID:931760 KEGG:spn:SP_1247 PATRIC:19706887
ProtClustDB:CLSK877065 Uniprot:Q97QG7
Length = 1179
Score = 118 (46.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 113 QKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRKSWKSIDCL 172
++ F + F I + + ++ + GG+ADL E D G++ V+PP K +S++ +
Sbjct: 1024 KERFKSTFEVIRESFKVTFKQMFGGGQADLILTE-GDLLTAGVEISVQPPGKKIQSLNLM 1082
Query: 173 SGGEKTLASLALVFAL 188
SGGEK L++LAL+F++
Sbjct: 1083 SGGEKALSALALLFSI 1098
>GENEDB_PFALCIPARUM|PF11_0317 [details] [associations]
symbol:PF11_0317 "structural maintenance of
chromosome protein, putative" species:5833 "Plasmodium falciparum"
[GO:0000070 "mitotic sister chromatid segregation" evidence=ISS]
[GO:0003680 "AT DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008278 "cohesin complex" evidence=ISS]
InterPro:IPR010935 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0016887 GO:GO:0000070
GO:GO:0003690 GO:GO:0003680 EMBL:AE014186 GO:GO:0008278
SUPFAM:SSF75553 KO:K06636 HSSP:Q9X0R4 RefSeq:XP_001347988.1
ProteinModelPortal:Q8II57 EnsemblProtists:PF11_0317:mRNA
GeneID:810864 KEGG:pfa:PF11_0317 EuPathDB:PlasmoDB:PF3D7_1130700
HOGENOM:HOG000282411 OMA:CEREASK ProtClustDB:CLSZ2515177
Uniprot:Q8II57
Length = 1818
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLTF------GGKA--DL----EYKEYSDPYAQGIKYV 158
KR +F F I + Y LT+ GG+A DL E+ + +P+ GIKY
Sbjct: 1647 KRSYKFLHCFNYIKNIIDNVYNNLTYNAKHHVGGQAFLDLCNFNEFNKDDEPFYCGIKYN 1706
Query: 159 VRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
PP K + I LSGGEK++++LAL+F++ Y
Sbjct: 1707 NMPPMKRYFEISELSGGEKSISALALIFSIQKY 1739
>UNIPROTKB|Q8II57 [details] [associations]
symbol:PF11_0317 "Structural maintenance of chromosome
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0000070 "mitotic sister chromatid segregation" evidence=ISS]
[GO:0003680 "AT DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0008278 "cohesin complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR010935 Pfam:PF06470 SMART:SM00968 InterPro:IPR003395
Pfam:PF02463 GO:GO:0005524 GO:GO:0016887 GO:GO:0000070
GO:GO:0003690 GO:GO:0003680 EMBL:AE014186 GO:GO:0008278
SUPFAM:SSF75553 KO:K06636 HSSP:Q9X0R4 RefSeq:XP_001347988.1
ProteinModelPortal:Q8II57 EnsemblProtists:PF11_0317:mRNA
GeneID:810864 KEGG:pfa:PF11_0317 EuPathDB:PlasmoDB:PF3D7_1130700
HOGENOM:HOG000282411 OMA:CEREASK ProtClustDB:CLSZ2515177
Uniprot:Q8II57
Length = 1818
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 111 KRQKEFDTNFVKIGKRVQECYQMLTF------GGKA--DL----EYKEYSDPYAQGIKYV 158
KR +F F I + Y LT+ GG+A DL E+ + +P+ GIKY
Sbjct: 1647 KRSYKFLHCFNYIKNIIDNVYNNLTYNAKHHVGGQAFLDLCNFNEFNKDDEPFYCGIKYN 1706
Query: 159 VRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
PP K + I LSGGEK++++LAL+F++ Y
Sbjct: 1707 NMPPMKRYFEISELSGGEKSISALALIFSIQKY 1739
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.131 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 199 171 0.00090 108 3 11 22 0.39 32
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 612 (65 KB)
Total size of DFA: 184 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.67u 0.09s 17.76t Elapsed: 00:00:02
Total cpu time: 17.68u 0.09s 17.77t Elapsed: 00:00:02
Start: Thu Aug 15 16:22:30 2013 End: Thu Aug 15 16:22:32 2013