RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12760
         (199 letters)



>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 329

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 28/87 (32%), Positives = 43/87 (49%)

Query: 105 YEQCLSKRQKEFDTNFVKIGKRVQECYQMLTFGGKADLEYKEYSDPYAQGIKYVVRPPRK 164
             + L      F   F  I +   E +  L+ GG A L  +   DP++ G++   +P  K
Sbjct: 158 ERRLLIDDISVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGK 217

Query: 165 SWKSIDCLSGGEKTLASLALVFALHYY 191
             K I+ +SGGEK L +LA VFA+  +
Sbjct: 218 DVKRIEAMSGGEKALTALAFVFAIQKF 244


>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 427

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 99  NTYCTGYEQCLSKRQKEFDTNFVKIGKRVQECYQMLT---------FGGKADLEYKEYSD 149
                 + +   KR++ F+  F  +   +   Y+ LT          GG A L  ++  +
Sbjct: 251 KKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDE 310

Query: 150 PYAQGIKYVVRPPRKSWKSIDCLSGGEKTLASLALVFALHYY 191
           P+  GIKY   PP K +K ++ LSGGEKT+A+LAL+FA++ Y
Sbjct: 311 PFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSY 352


>d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 301

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 137 GGKADLEYKEYSDPYAQGIK 156
           G     +Y+ + D  A G+ 
Sbjct: 97  GFATGTDYRGWIDAVASGLG 116


>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca,
           strain yx [TaxId: 2021]}
          Length = 285

 Score = 26.4 bits (58), Expect = 2.2
 Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 137 GGKADL-EYKEYSDPYAQGIK 156
           GG      Y+ + D +A G+K
Sbjct: 85  GGAPSHSAYRSWIDEFAAGLK 105


>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins
          {Bovine enterovirus, VG-5-27 [TaxId: 12064]}
          Length = 284

 Score = 26.0 bits (57), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 35 ISDILSNSSIHTTPRSANTMAPASKWRSPVSGSDVTAAVRPT 76
              L NS+I TT  +AN       W + +S +D T+  +PT
Sbjct: 50 AQLTLGNSTI-TTQEAANICVAYGCWPAKLSDTDATSVDKPT 90


>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
          rhinovirus B 14 (HRV-14) [TaxId: 12131]}
          Length = 295

 Score = 25.2 bits (55), Expect = 5.4
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 35 ISDILSNSSIHTTPRSANTMAPASKWRSPVSGSDVTAAVRPT 76
              L NS+I TT  +AN +   ++W   +   D +   + +
Sbjct: 47 QQITLGNSTI-TTQEAANAVVCYAEWPEYLPDVDASDVNKTS 87


>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
           {Escherichia coli [TaxId: 562]}
          Length = 241

 Score = 25.3 bits (55), Expect = 6.0
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 172 LSGGEKTLASLALVFALHYYWLWLQN 197
           LSGG++   ++A     +   L    
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDE 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 741,127
Number of extensions: 30884
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 13
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)