BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1277
(1312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/668 (57%), Positives = 460/668 (68%), Gaps = 88/668 (13%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1678 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1735
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER + VTE++
Sbjct: 1736 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHVTEAE 1795
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+T+E L+RI +H R PEGL L+D+LR+N ++ERA G
Sbjct: 1796 FFHTIETLMRINAHSRGNAPEGLPQLMDVLRSNFD---AMMERAHG-------------- 1838
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
GP +HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1839 ---GPNFMMHSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1892
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1893 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1952
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D E RQ EF QLPYHRIFIML
Sbjct: 1953 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLL 2010
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 2011 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2070
Query: 1058 KVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFK 1117
K GWP+YAQLLID+FK
Sbjct: 2071 K---------------------------------------------GWPMYAQLLIDLFK 2085
Query: 1118 FLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLIL 1177
+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFLCDYHY FCDVIP NCIQ+RNLIL
Sbjct: 2086 YLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL 2145
Query: 1178 SAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTF 1237
SAFP NMRLPDPFTPNLKVD L++IN APR+ +F ++ P FKKDLD+YLKTRSPVTF
Sbjct: 2146 SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSPVTF 2204
Query: 1238 LAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFL 1297
L+E+R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI I K +P+ TI HSAHMDIF
Sbjct: 2205 LSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQ 2264
Query: 1298 NFAVDLDT 1305
N AVDLDT
Sbjct: 2265 NLAVDLDT 2272
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/574 (49%), Positives = 364/574 (63%), Gaps = 41/574 (7%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K + MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1122 MKRVSIELNFHSLYSNFLDALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLLKNL 1181
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLDLKSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1182 GHWLGMITLAKNKPILHTDLDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPP 1241
Query: 121 EIFLASLVTLVGV--QNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDP 178
+ +++ ++ Q L +L IE L + L DL P LKD
Sbjct: 1242 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLC---------KNLVLDINDLKPGTLLKDK 1292
Query: 179 DNLKFSELQLAVTHKK-------PPPQALTQPAINAQSSGAAAQTMAAQSSTPPLT---- 227
D LK + QL+ K PP + ++ AI +++G ++ Q S T
Sbjct: 1293 DRLKSLDEQLSAPKKDVKQPEELPPMTSASEYAI--RTAGKLWASVEKQESDAVFTATAT 1350
Query: 228 ---------MQQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVER 278
PP+P+YSY ++V ++ +APHI +N + LFQA P LK VR A+ER
Sbjct: 1351 APPPSTTCTTTVPPQPQYSYHDIHVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIER 1410
Query: 279 SIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRD 338
++ E + VV+R++KIA+ T EQIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+
Sbjct: 1411 AVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCRE 1470
Query: 339 QLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDI 398
L SI NLK+ F TA+ A+PQQ+E+M+Q A DN ELAC FIQKTA+EKA P++
Sbjct: 1471 PLLMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEM 1530
Query: 399 DKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNI 458
DK A E+E RKHAR E RRYCD VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+
Sbjct: 1531 DKRPATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNV 1590
Query: 459 PGFQPLSERDAALFLPKPEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGV 518
PGF P ++ L +P P D++ IYDK I+E+E L ++ + +
Sbjct: 1591 PGFLPTND------LTQPTGFLAQPMKQQAWATDDVAQIYDKCITELEQHLHAIPPALSM 1644
Query: 519 QNTLLPSSLHALIEALVALRRTRDAHSAVALIQK 552
+L +L+EA+ R +RDA +A+ L+QK
Sbjct: 1645 NPQ--SQALRSLLEAVAVARNSRDAIAALGLLQK 1676
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1385 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1444
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F TA+
Sbjct: 1445 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATAM 1488
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/667 (56%), Positives = 461/667 (69%), Gaps = 87/667 (13%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + DPEL L Y++ HL ++KALQD RA+G QW NKQITRCLIECR+EY+Y
Sbjct: 1665 VEGLLDATSGA--DPELLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKY 1722
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER + +TE+D
Sbjct: 1723 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEAD 1782
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+R ++H R PEGL L+D++R+N+ +++R G
Sbjct: 1783 LFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYE---AMIDRHHG-------------- 1825
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
GP +HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1826 ---GPNFMMHSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1879
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS-------------PTPTRSKMFQTLDAYAK 938
QM+ GILK+D+LITRFFR T + V +S P R+K + LDA+ +
Sbjct: 1880 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVR 1939
Query: 939 LIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFL 998
LIALLVKHSG E N+ TKINLLNKVLGI+ GVLI D + RQ EF QLPYHRIFIML L
Sbjct: 1940 LIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLL 1997
Query: 999 ELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQK 1058
ELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP QK
Sbjct: 1998 ELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQK 2057
Query: 1059 VLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKF 1118
GWP+YAQLLID+FK+
Sbjct: 2058 ---------------------------------------------GWPMYAQLLIDLFKY 2072
Query: 1119 LAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILS 1178
LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFLCDYHY FCDVIP NCIQ+RNLILS
Sbjct: 2073 LAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILS 2132
Query: 1179 AFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFL 1238
AFP NMRLPDPFTPNLKVD L++IN APR+ +F ++ P+ FKKDLD+YLKTRSPVTFL
Sbjct: 2133 AFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PSQFKKDLDSYLKTRSPVTFL 2191
Query: 1239 AEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLN 1298
+E+R+ +QVS+EPG+RYN +L+NA+V YVGTQAI I K +P+ TI HSAHMDIF N
Sbjct: 2192 SELRSNLQVSNEPGNRYNIQLINALVPYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQN 2251
Query: 1299 FAVDLDT 1305
AVDLDT
Sbjct: 2252 LAVDLDT 2258
Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/556 (50%), Positives = 361/556 (64%), Gaps = 24/556 (4%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1128 MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1187
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DL+LKSL+ EAY KGQQELLYVVPFVAKV+ES RS
Sbjct: 1188 GHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV----- 1242
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDA-HSAVALIQKDLVPSYYLKDPD 179
IF +G+ N L + LH + + L+ + +++ DL P L+D D
Sbjct: 1243 -IFRPQNPWTMGIMNVL--AELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKD 1299
Query: 180 NLKFSELQLAVTHK--KPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYS 237
LK E QL+ K KPP + L P + S A + ++T T PP P++S
Sbjct: 1300 KLKTLEEQLSAPKKETKPPEELL--PIVTTDSVPFTAAP-STPATTTACTATGPPTPQFS 1356
Query: 238 YTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVN 297
Y +NV + +APHI IN + L QA P LK VR A+ER++ E + VV+R++KIA+
Sbjct: 1357 YHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMT 1416
Query: 298 TAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAIT 357
T EQIV+KDFALD +E MR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F A+
Sbjct: 1417 TCEQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALR 1476
Query: 358 NATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQR 417
TPQQ+E+M++ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E R
Sbjct: 1477 APTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGR 1536
Query: 418 RYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSE-RDAALFLPKP 476
RYCD VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ FL +P
Sbjct: 1537 RYCDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQP 1596
Query: 477 EPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVA 536
P D++ IY+K IS++E L ++ + + ++ +L+EA+V
Sbjct: 1597 MKQQAWP-------TDDVAHIYEKCISDLEQHLHAIPPALAMNPQT--QAIRSLLEAVVM 1647
Query: 537 LRRTRDAHSAVALIQK 552
R +RD +A+ L+QK
Sbjct: 1648 ARNSRDGIAALGLLQK 1663
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 72/98 (73%)
Query: 553 LALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRS 612
+ L QA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +E MR
Sbjct: 1378 IPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRV 1437
Query: 613 AAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
AAHH+ RNLTAGMAMITCR+ L SI NLK+ F A+
Sbjct: 1438 AAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAAL 1475
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/668 (56%), Positives = 462/668 (69%), Gaps = 88/668 (13%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1666 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1723
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A VTE+D
Sbjct: 1724 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEAD 1783
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G
Sbjct: 1784 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHG-------------- 1826
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
GP +HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1827 ---GPNFMMHSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1880
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1881 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1940
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1941 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1998
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1999 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2058
Query: 1058 KVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFK 1117
K GWP+YAQLLID+FK
Sbjct: 2059 K---------------------------------------------GWPMYAQLLIDLFK 2073
Query: 1118 FLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLIL 1177
+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFLCDYHY FCDVIP NCIQ+RNLIL
Sbjct: 2074 YLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL 2133
Query: 1178 SAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTF 1237
SAFP NMRLPDPFTPNLKVD L++IN APR+ +F ++ P FKKDLD+YLKTRSPVTF
Sbjct: 2134 SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSPVTF 2192
Query: 1238 LAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFL 1297
L+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI I K +P+ TI HSAHMDIF
Sbjct: 2193 LSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQ 2252
Query: 1298 NFAVDLDT 1305
N AVDLDT
Sbjct: 2253 NLAVDLDT 2260
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/555 (50%), Positives = 362/555 (65%), Gaps = 29/555 (5%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1136 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1195
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1196 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPP 1255
Query: 121 EIFLASLVTLVGV--QNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDP 178
+ +++ ++ Q L +L IE L +AL +L P LKD
Sbjct: 1256 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLC---------KNLALDINELKPGNLLKDK 1306
Query: 179 DNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSY 238
D LK + QL+ KK Q P I ++ T ++T PP+P+YSY
Sbjct: 1307 DRLKNLDEQLSAP-KKDVKQPEELPPITTTTTSTTPATNTTCTAT------VPPQPQYSY 1359
Query: 239 TSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNT 298
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T
Sbjct: 1360 HDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTT 1419
Query: 299 AEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITN 358
EQIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1420 CEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRT 1479
Query: 359 ATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRR 418
A+PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RR
Sbjct: 1480 ASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRR 1539
Query: 419 YCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSE-RDAALFLPKPE 477
YCD VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ FL +
Sbjct: 1540 YCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQ-- 1597
Query: 478 PPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVAL 537
P+ D++ IYDK I+E+E L ++ + + +L +L+E +V
Sbjct: 1598 ------PMKQAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQ--AQALRSLLEVVVLS 1649
Query: 538 RRTRDAHSAVALIQK 552
R +RDA +A+ L+QK
Sbjct: 1650 RNSRDAIAALGLLQK 1664
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1374 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1433
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1434 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1477
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/668 (56%), Positives = 462/668 (69%), Gaps = 88/668 (13%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1665 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1722
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A +TE+D
Sbjct: 1723 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEAD 1782
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G
Sbjct: 1783 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHG-------------- 1825
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
GP +HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1826 ---GPNFMMHSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1879
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1880 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1939
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1940 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1997
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1998 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2057
Query: 1058 KVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFK 1117
K GWP+YAQLLID+FK
Sbjct: 2058 K---------------------------------------------GWPMYAQLLIDLFK 2072
Query: 1118 FLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLIL 1177
+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFLCDYHY FCDVIP NCIQ+RNLIL
Sbjct: 2073 YLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL 2132
Query: 1178 SAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTF 1237
SAFP NMRLPDPFTPNLKVD L++IN APR+ +F ++ P FKKDLD+YLKTRSPVTF
Sbjct: 2133 SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSPVTF 2191
Query: 1238 LAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFL 1297
L+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI I K +P+ TI HSAHMDIF
Sbjct: 2192 LSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQ 2251
Query: 1298 NFAVDLDT 1305
N AVDLDT
Sbjct: 2252 NLAVDLDT 2259
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 284/555 (51%), Positives = 363/555 (65%), Gaps = 29/555 (5%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1135 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1194
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1195 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPP 1254
Query: 121 EIFLASLVTLVGV--QNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDP 178
+ +++ ++ Q L +L IE L +AL +L P LKD
Sbjct: 1255 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLC---------KNLALDINELKPGNLLKDK 1305
Query: 179 DNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSY 238
D LK + QL+ KK Q PAI ++ T ++T PP+P+YSY
Sbjct: 1306 DRLKNLDEQLSAP-KKDVKQPEELPAITTTTTSTTPATSTTCTAT------VPPQPQYSY 1358
Query: 239 TSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNT 298
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T
Sbjct: 1359 HDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTT 1418
Query: 299 AEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITN 358
EQIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1419 CEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRT 1478
Query: 359 ATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRR 418
A+PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RR
Sbjct: 1479 ASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRR 1538
Query: 419 YCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSE-RDAALFLPKPE 477
YCD VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ FL +
Sbjct: 1539 YCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQ-- 1596
Query: 478 PPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVAL 537
P+ D++ IYDK I+E+E L ++ + + +L +L+E +V
Sbjct: 1597 ------PMKQAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQ--AQALRSLLEVVVLS 1648
Query: 538 RRTRDAHSAVALIQK 552
R +RDA +A+ L+QK
Sbjct: 1649 RNSRDAIAALGLLQK 1663
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1373 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1432
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1433 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1476
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 195/431 (45%), Gaps = 65/431 (15%)
Query: 829 SLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFT 888
++N + PA I S DLD+ L ++ + WV + + A D KA
Sbjct: 1562 TMNKSVSPASEILS---------DLDNKQQLNDQIIIVFVSWVHLLRNSA-TNDETKA-- 1609
Query: 889 LFVHQMNCHGILKSDELITRFFR--FATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKH 946
FV+Q++ GIL EL +FFR LV + + + +DAYA L+ +VK+
Sbjct: 1610 AFVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAASVNAPDYFNVDAYASLLVNVVKY 1669
Query: 947 SGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPV 1006
+ ++K L K++ +I GV + HQ + R+F + EL+ V
Sbjct: 1670 TEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDV 1729
Query: 1007 LEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSV 1066
LE+ + S ++P R+F
Sbjct: 1730 LESCFVDIYSVILECFLAIQP----------------RSF-------------------- 1753
Query: 1067 LHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNV 1126
P F +AWL +++H + ++L++ + K L++++L+ KFL L++
Sbjct: 1754 ---------PAFTFAWLSLISHSYLLPKVLLVN-NDKINDLFSEILMSFLKFLD--LKD- 1800
Query: 1127 ELSKPNLTF-YKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMR 1185
++ K Y G LR++LVLLHDFP FL + YQ IP C+Q+RN++LSAFP ++
Sbjct: 1801 DIDKAQFKLLYNGFLRIILVLLHDFPGFLATHCYQLIPYIPLECVQLRNMVLSAFPSDLH 1860
Query: 1186 LPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAV 1245
LPDPF LKV L ++ +AP + ++ ++ DL+A + P +A++ V
Sbjct: 1861 LPDPFAQGLKVGRLPEVTRAPLISNSVSASLEKFASALDLEACFSSSKPAE-VAKLLLEV 1919
Query: 1246 QVSHEPGSRYN 1256
S + ++ N
Sbjct: 1920 YSSQDTPTKLN 1930
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 213/463 (46%), Gaps = 63/463 (13%)
Query: 2 KRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLG 61
+R S E NF LY FL+E+K D+ +V ++T + I ++ ++ + S++T LKNLG
Sbjct: 909 QRVSREANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLG 968
Query: 62 HWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVE 121
WLG +TL RN+PI + + K L+ E G+ + V+PFV KV+E S S +
Sbjct: 969 SWLGSITLLRNKPITTLQVSFKDLLLEGIDSGRID--RVLPFVCKVLEKASSSVIFKPPN 1026
Query: 122 IFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNL 181
+L ++ L LV L + D + + L+ + +K DN+
Sbjct: 1027 PWLMGILKL------------------LVELYQFADFRLNLKFEIELLLNNLNVK-MDNI 1067
Query: 182 KFSEL-QLAVTHKKPPPQALTQPAINAQ---SSGAAAQTMAAQSSTPPLTMQQPPEPRYS 237
+ SE+ + + K + L + +NA+ + Q + A SS
Sbjct: 1068 EPSEMYRNHLVQKADLEKELPEDVLNAEFPDGTDVITQYIVAASS--------------- 1112
Query: 238 YTSVNVANIGNIAPHIVINSQLALFQAQP--VLKPLVRTAVERSIHEWISLVVERAVKIA 295
I + +A +P +K + + +++S+ E IS VV R+V IA
Sbjct: 1113 --------------QITVTDAVAQVFGKPKPAIKNITQLIIQQSVLEIISAVVRRSVGIA 1158
Query: 296 VNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTA 355
T + +++KDFA + + R+ AA +A+ L +AM+TCR+ LQ + N + +
Sbjct: 1159 AITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQMLMINNFRTIALQD 1218
Query: 356 ITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGE-YERRKHARS 414
+ N + +D+ V+ N+ +A + I+ A E A+ +ID + ER +H ++
Sbjct: 1219 VENVHAAVAQAIDELVS----QNLFVASSVIESVASETAIAEIDAEIEHMIVERVRHRKT 1274
Query: 415 EQRR-YCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFAR 456
+ D +P ++L +TPQQ +YE F R
Sbjct: 1275 TPNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQLYENFDR 1316
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 518 VQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEW 577
V N P + + +VA AVA + + +P +K + + +++S+ E
Sbjct: 1091 VLNAEFPDGTDVITQYIVAASSQITVTDAVAQV----FGKPKPAIKNITQLIIQQSVLEI 1146
Query: 578 ISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQS 637
IS VV R+V IA T + +++KDFA + + R+ AA +A+ L +AM+TCR+ LQ
Sbjct: 1147 ISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQML 1206
Query: 638 IKANLKHLFTTAITVIENL 656
+ N + T A+ +EN+
Sbjct: 1207 MINNFR---TIALQDVENV 1222
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 118/449 (26%), Positives = 207/449 (46%), Gaps = 58/449 (12%)
Query: 861 EKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGV 920
EK + EWV + V++ + T+F+ Q+ G++ + + F + +SL + V
Sbjct: 1570 EKLYLVFTEWVKLLQR---VENNDVITTVFIKQLVEKGVISDTDNLLTFVK--SSLELSV 1624
Query: 921 SP----TPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITD 976
S PT ++F +DA LI L+ G + +T+ + +N + +I V D
Sbjct: 1625 SSFKESDPT-DEVFIAIDALGSLIIKLLILQGFKD----DTRRDYINAIFSVIVLVFAKD 1679
Query: 977 QEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYA 1036
F++ PY R+F + E + NF +S + ++
Sbjct: 1680 HSQEGTTFNERPYFRLFSNILYEW----ATIRTHNFVRISDSSTRQELIE---------- 1725
Query: 1037 WLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRML 1096
+ V + TF G LH L+P PGF++AW+ +++HR + ML
Sbjct: 1726 -FDSVFYNTFSG-----------------YLHALQPFAFPGFSFAWVTLLSHRMLLPIML 1767
Query: 1097 VITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCD 1156
+ P++ GW L+ID+FKFL + +S YKG LRV+L + +D P FL +
Sbjct: 1768 RL-PNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILGISNDMPSFLIE 1826
Query: 1157 YHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLI 1216
HY+ + +P Q++N+ILSA P NM +P+P+ +L ++ + + P + F +I
Sbjct: 1827 NHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPYDVDLNMEDIPACKELPEVF--FDPVI 1884
Query: 1217 QPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHE--PGSRY-----NTELMNAIVLYVGT 1269
+ KK +D YL+ S + A + +++ G Y +++L+ AIVL+VG
Sbjct: 1885 DLHSLKKPVDNYLRIPSNSLLRTILSAIYKDTYDIKKGVGYDFLSVDSKLIRAIVLHVGI 1944
Query: 1270 QAILSIRAKSLSPNNKTIAHSAHMDIFLN 1298
+A I K S N S++ + N
Sbjct: 1945 EA--GIEYKRTSSNAVFNTKSSYYTLLFN 1971
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 260 ALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSA 319
+F P LK + + A+ +S+ E + VVE++ IAV T +I+ KDFA + DE ++++A
Sbjct: 1080 TIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTA 1139
Query: 320 AHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNM 379
A + R+L +A T + L++ I++ ++ L ++ ++ +EL +N+
Sbjct: 1140 AIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEEL-----DTAINENI 1194
Query: 380 ELACAFIQKTAIEKALPDI-DKHLAGEYERRKHARSEQRRYCDSQVLTYQAE----RMPE 434
+A I+K +++K+ D+ D+ + RR H + R D +T +PE
Sbjct: 1195 GIALVLIEKASMDKSTQDLADQLMQAIAIRRYH----KERRADQPFITQNTNPYSLSLPE 1250
Query: 435 QIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLPKPEPPPP 481
+ LK GVTPQQ VYEEF +NIP D F P PP
Sbjct: 1251 PLGLKNTGVTPQQFRVYEEFGKNIPNL------DVIPFAGLPAHAPP 1291
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%)
Query: 554 ALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSA 613
+F P LK + + A+ +S+ E + VVE++ IAV T +I+ KDFA + DE ++++A
Sbjct: 1080 TIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTA 1139
Query: 614 AHHIARNLTAGMAMITCRDQLQQSIKANLKHL 645
A + R+L +A T + L++ I++ ++ L
Sbjct: 1140 AIIMVRHLAQSLARATSIEPLKEGIRSTMQSL 1171
>sp|A8GGN0|CITD_SERP5 Citrate lyase acyl carrier protein OS=Serratia proteamaculans
(strain 568) GN=citD PE=3 SV=1
Length = 102
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 707 REEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVE 761
RE LE+ D ++R P++DL +A S+E +Q+LQHY VE
Sbjct: 5 REAMAGTLESSDVMVRIAPAEGPEHDLLIASSVEKQFGEAIRQTLLQVLQHYQVE 59
>sp|C5C3P2|DNAK_BEUC1 Chaperone protein DnaK OS=Beutenbergia cavernae (strain ATCC BAA-8
/ DSM 12333 / NBRC 16432) GN=dnaK PE=3 SV=1
Length = 628
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 368 DQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHAR----SEQRRYCDSQ 423
+Q++TI G + + K I++ + + + H A +++RR+ A +EQ Y +
Sbjct: 474 EQSMTITGG-------SALPKDEIDRMIKEAEAHAAEDHKRREEAEVRNTAEQLVYSTEK 526
Query: 424 VLTYQAERMPEQIRLKV 440
+LT AE++PE + +V
Sbjct: 527 LLTENAEKLPEDVASEV 543
>sp|Q2HR64|DEN_HHV8P Deneddylase ORF64 OS=Human herpesvirus 8 type P (isolate GK18)
GN=ORF64 PE=1 SV=1
Length = 2635
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 501 LISEVE---IFLASLVTLVG-VQNTLLPSSLHALI----EALVALRRTRDAHSAVALIQK 552
L+ E E + LA++ T+ G Q T+ PS+L L EA+ A++R RD+ L +K
Sbjct: 1565 LVQEAEQAGLLLATIDTVAGQAQETISPSTLQGLYQQGQEAMAAIKRFRDSPQLAGLQEK 1624
Query: 553 LALFQ 557
LA Q
Sbjct: 1625 LAELQ 1629
>sp|Q5SJS4|GSA_THET8 Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=hemL PE=1 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 801 LRANHHDQP--MLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPG 858
R N+H +LVE GA TL G+P+ +A P + ++ + + +DP G
Sbjct: 140 FRGNYHGHADGLLVEAGSGALTL--GVPS----SAGVPEEYA-----KLTLVLEYNDPEG 188
Query: 859 LFEKTEYLLREWVTIYHSP----AGVKDPNKAFTLFVHQMNCHGILK-SDELITRF---F 910
L E + E I P AGV P + F +H+ +G+L +DE++T F F
Sbjct: 189 LREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEAKAYGVLLIADEVMTGFRLAF 248
Query: 911 RFATSLVVGVSP 922
AT L +G+ P
Sbjct: 249 GGATEL-LGLKP 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,352,921
Number of Sequences: 539616
Number of extensions: 19445740
Number of successful extensions: 60271
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 60083
Number of HSP's gapped (non-prelim): 145
length of query: 1312
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1182
effective length of database: 121,419,379
effective search space: 143517705978
effective search space used: 143517705978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)