Query psy1277
Match_columns 1312
No_of_seqs 177 out of 295
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:12:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1831|consensus 100.0 2E-200 4E-205 1809.6 66.6 1043 1-1310 420-1475(1591)
2 COG5103 CDC39 Cell division co 100.0 2E-172 5E-177 1529.7 61.5 1029 2-1310 830-1885(2005)
3 PF04054 Not1: CCR4-Not comple 100.0 1.1E-72 2.5E-77 656.6 21.7 269 995-1310 1-281 (379)
4 PF12842 DUF3819: Domain of un 100.0 1.9E-46 4.2E-51 384.7 19.1 147 265-414 1-147 (147)
5 KOG1831|consensus 99.9 4.2E-21 9.2E-26 238.6 20.9 91 557-647 618-708 (1591)
6 PF12842 DUF3819: Domain of un 99.6 1.3E-15 2.8E-20 157.2 11.3 90 559-648 1-90 (147)
7 COG5103 CDC39 Cell division co 99.3 3.1E-10 6.7E-15 140.6 24.6 92 559-650 1047-1138(2005)
8 PF04054 Not1: CCR4-Not comple 97.2 0.00019 4.2E-09 85.5 3.4 101 1056-1183 21-133 (379)
9 KOG1467|consensus 83.4 3.5 7.6E-05 50.2 8.1 113 274-394 240-357 (556)
10 cd00686 Terpene_cyclase_cis_tr 34.4 71 0.0015 38.2 5.8 76 1090-1184 112-200 (357)
11 smart00543 MIF4G Middle domain 29.4 75 0.0016 33.9 4.8 140 2-150 43-194 (200)
12 cd03565 VHS_Tom1 VHS domain fa 25.6 4.4E+02 0.0096 27.6 9.4 53 708-761 17-69 (141)
13 COG5088 SOH1 Rad5p-binding pro 24.3 60 0.0013 31.9 2.5 56 12-67 48-108 (114)
14 PF08167 RIX1: rRNA processing 20.5 1.9E+02 0.0041 30.9 5.7 87 1102-1192 55-154 (165)
15 cd03568 VHS_STAM VHS domain fa 20.4 5.8E+02 0.012 26.9 9.1 39 858-900 96-134 (144)
No 1
>KOG1831|consensus
Probab=100.00 E-value=2e-200 Score=1809.60 Aligned_cols=1043 Identities=39% Similarity=0.599 Sum_probs=851.6
Q ss_pred CccccccccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhhhhhhhhhhccCccccccCC
Q psy1277 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDL 80 (1312)
Q Consensus 1 ~~Ras~EpN~H~lY~~~l~~l~~~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG~WLG~iTLarnkPI~~~~l 80 (1312)
+||||+|+|||+||.+|+++++++ +| -+||++|||||||||.|||||||||++.++
T Consensus 420 ~qR~S~E~Nf~~LYskFi~ai~n~--------~t----------------~~dk~~LKNLgsWLG~iTl~rNkPI~~l~l 475 (1591)
T KOG1831|consen 420 TQRVSKEINFHELYSKFISAIKNS--------VT----------------ESDKRLLKNLGSWLGEITLGRNKPIKELDL 475 (1591)
T ss_pred hhhhhcccchHHHHHHHHHHHhCc--------cc----------------hhHHHHHHHHHHHHHHHHHhcCCchHHhhh
Confidence 589999999999999999999998 22 189999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCceeeEeehhhHHHhhhccccccCCCCchhHHHHHHHHh--hccCCCCcchhHHHHHhhcccccccc
Q psy1277 81 DLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVG--VQNTLLPSSLHALIEALVALRRTRDA 158 (1312)
Q Consensus 81 ~~K~LL~eay~~g~~~L~~viPFV~KvLe~~~~SkvF~pPNPW~~~il~lL~--~~~~~lKlnLkFEIEvL~~~~~~~~~ 158 (1312)
|||+||+|||++|+ +..|+|||||||+.|.+|+|||||||||||||++|+ |++||||+||||||||||
T Consensus 476 ~~kslLlEaY~sg~--ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLl-------- 545 (1591)
T KOG1831|consen 476 DFKSLLLEAYGSGR--LLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLL-------- 545 (1591)
T ss_pred hHHHHHHHHhccCc--eeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehh--------
Confidence 99999999999996 999999999999999999999999999999999999 999999999999999999
Q ss_pred cccccccccccccccccCCCcchhhhHHHhhhccCCCCCCCCCchhhhhccccccccccccCCCCCCCCCCCCCCCCccc
Q psy1277 159 HSAVALIQKDLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSY 238 (1312)
Q Consensus 159 ~k~l~l~~~~i~p~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 238 (1312)
|+|++++++++|+++++| ...++++++...-+..+++. .+.++ +++ ++ . .|.|.|
T Consensus 546 -kslN~~l~~le~~~~lnn---~~~i~~~L~~~~~e~h~~~~-~~~~q---~~~------------~~---~--~~~fa~ 600 (1591)
T KOG1831|consen 546 -KSLNVILSELEPSETLNN---IIRIKKQLVLMKLETHQSLE-LEDIQ---QVT------------LG---N--TIAFAY 600 (1591)
T ss_pred -ccccchHhhcchhhHHhh---HHhHHHHHccCChhhccccc-cCchh---ccc------------cc---C--Ccccee
Confidence 999999999999999998 34567777653322111111 11110 000 00 1 123899
Q ss_pred cccccccccCCCCceeecccccccccCcchhhHHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHhhcCCCCcchHHHHH
Q psy1277 239 TSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRS 318 (1312)
Q Consensus 239 ~~~~~~~~~~l~~~i~i~~~~~~~~~~p~lk~~v~~Ai~rairEii~pvveRsv~IA~~tT~~lv~KDFa~e~De~~~r~ 318 (1312)
++.|+.+..+..+++.+.| ||+.|++|+.|++++|+|||.||||||+.||++||+.+++||||+|+||++||.
T Consensus 601 ~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleqsv~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~ 673 (1591)
T KOG1831|consen 601 DARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQSVVEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRL 673 (1591)
T ss_pred cccccchhhhhhhhccCCC-------CccHHHHHHHHHHHHHHHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHH
Confidence 9999888888888888875 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHH
Q psy1277 319 AAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDI 398 (1312)
Q Consensus 319 aa~~Mv~~LA~sLAlvTcrepL~~si~~~l~~~l~~~l~~~~~~~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA~~~i 398 (1312)
||+.|||.||++||++||||||+++|.++|+..+.+.++ -...+++++..+++||++++|.+|||+|+|||++||
T Consensus 674 Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~-----~~~ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI 748 (1591)
T KOG1831|consen 674 AASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLS-----LMAAIARAADTLQSDNVELVVKFIEKTAIEKATQDI 748 (1591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhH-----HHHHHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999987766543 234588899999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhhhh--cCCCcccccccchhhhhCCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCcchh-hcccCCC
Q psy1277 399 DKHLAGEYERRKHARS--EQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERD-AALFLPK 475 (1312)
Q Consensus 399 d~~l~~~~~~R~~~r~--~~~~f~D~~~~~~~~~~LPe~Lrlk~~Gl~~~Q~~VYEdF~r~~~~~~~~~~~~-~~~~~~~ 475 (1312)
|.+|++++..|+.||+ ++.||+|+....|+. .|||++|+++||++|+|++|||+|+|.+||+.+.+++. .+...+.
T Consensus 749 ~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~~-~LP~~vr~~~~~~~~~l~~vYe~F~k~i~~~~~~s~~~~la~~~~~ 827 (1591)
T KOG1831|consen 749 DSRLEQDICGRVFHKENPEVMPFVDLLSAAYSC-TLPEVVRLKIGGLTPQLFRVYEEFPKPIPGFLGNSSRKDLAEYITE 827 (1591)
T ss_pred HHHHHHhhHhheecccCCccccchhhhhhhhhc-cCcHhhhcccCCCCHHHHHHHHHcccccccccccCCCcccccccCC
Confidence 9999999999999998 799999999998764 59999999999999999999999999999988777663 2223333
Q ss_pred CCCCCCCCCCccccCccchhhhHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHhhhccchhhHHHHHHhhh
Q psy1277 476 PEPPPPGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLAL 555 (1312)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~l 555 (1312)
+..-++ | ...+.+.....+++...++....+...+.|+ .+.++++.+.+++.+. +++
T Consensus 828 ~~dlt~--~---~~~s~~~~lv~~ei~~~~~~~a~~~~i~~~~-l~~~a~s~~~~m~~v~-~~~---------------- 884 (1591)
T KOG1831|consen 828 SSDLTQ--P---HVISNALDLVVREICGAIVEKACQTAIQTGM-LQFKAQSVEKLMEEVP-ARN---------------- 884 (1591)
T ss_pred Cccccc--h---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhcchhhHHhcc-chh----------------
Confidence 222111 0 0111111222222222222221111111100 1111111111111100 000
Q ss_pred hhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHhhhhhhhhhhhhHHHH
Q psy1277 556 FQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQ 635 (1312)
Q Consensus 556 ~q~~p~l~~l~~~aver~i~e~i~~v~Era~kia~~t~e~iv~Kdfal~~de~~m~~aa~~i~r~L~~~~A~itcrd~L~ 635 (1312)
.+...+. ..++ . .+ |.+-|.|..++ ..+|++
T Consensus 885 ---------~~~~~~~--------~~~~---~----~a-----------------r~i~hli~~~V-----~~~~~~--- 915 (1591)
T KOG1831|consen 885 ---------MVVNLVN--------SLLL---L----VA-----------------RSIEHLISGLV-----SYFMKN--- 915 (1591)
T ss_pred ---------hhHHHHH--------HHHH---H----HH-----------------HHHHHHHHHHH-----HHHHHH---
Confidence 0000000 0000 0 00 01111111110 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhhhhhhhHHHHHHHHHHHHHhhhchhhhhhHHHHHhhhccccccccHH
Q psy1277 636 QSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLE 715 (1312)
Q Consensus 636 ~si~~~~~~Lf~~a~~~~~~ll~~~~~~~~~~e~~~~~re~~~~~l~~L~~~~~~~~~~~~keVt~wlv~a~derk~n~~ 715 (1312)
.++....+.++..+++.|...|+++....-+.|+.++..+++++|||++
T Consensus 916 -------------------------------l~~~~~~~~I~~i~m~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~ 964 (1591)
T KOG1831|consen 916 -------------------------------LELDFSTEKIFKIIMEILDNICRFIQKAGVRKVSEAISSSRSSLEYNIE 964 (1591)
T ss_pred -------------------------------HHHhhcchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHH
Confidence 1223345678888888888777777666666799999999999999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHhcCCCC---hh
Q psy1277 716 AVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQP---PE 792 (1312)
Q Consensus 716 vi~~Lir~~Li~~~elD~~Lak~i~~~~~~~av~Fa~~lv~~~l~~~~~~~~~~~~Df~~tleaL~~~~~~~~~~---~~ 792 (1312)
.+..|++.+|++..++|.+++++|++|.+..++.|+..+++....++++........|..|-|.+.|+.+.-... .+
T Consensus 965 ~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~dnvi~~~~~~~~~~t~E~~~ri~q~v~s~~~~~g 1044 (1591)
T KOG1831|consen 965 KAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGDNVIADEWKNLFKETKEELFRILQSVESSEDKSG 1044 (1591)
T ss_pred HHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCcchhhhhhhhhhhhHHHHHHHHHHHHhcccccch
Confidence 999999999999999999999999999999999999999999999998666666677888999988854431100 00
Q ss_pred hHHHHHHHHhccCCCCcchhccCcCcccccCCCCccccccCCCCcccccccccccccCCCCCCCCChHHHHHHHHHHHHH
Q psy1277 793 GLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVT 872 (1312)
Q Consensus 793 ~l~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~q~~~~~~~~dp~~l~eq~~~lf~EWv~ 872 (1312)
......+ +.-+++... + .++ +. .....+++.++++|++.+|.|||.
T Consensus 1045 ~~~~~~~--------------------~~v~~~~k~---~--s~~----~~-----m~~~~~~~~~lt~K~~~v~~~Wv~ 1090 (1591)
T KOG1831|consen 1045 ECASLCD--------------------YIVEHAIKS---G--SSA----DF-----MFRRMDDKQKLTEKTEIVFLEWVI 1090 (1591)
T ss_pred hhhhHHH--------------------HHHHhccCC---C--Cch----hH-----HHHhcCcchhhhhHHHHHHHHHHH
Confidence 0000000 000010000 0 000 00 123557788999999999999999
Q ss_pred HhcCCCCCCCCchHHHHHHHHHHHcCCccCcchHHHHHHHHHHhhhcc----CCCCCccchh-hchHHHHHHHHHHHhhc
Q psy1277 873 IYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGV----SPTPTRSKMF-QTLDAYAKLIALLVKHS 947 (1312)
Q Consensus 873 l~~~~~~~~~~e~~~~~FI~qL~~~GILk~de~~~~FfR~~~E~sV~~----~pt~~~~~~f-~~IDA~akLiv~lvk~~ 947 (1312)
+|+++. +++...++||+||+++|||++||.+++|||.|+|+||+. ++.. ..++ ..++++.+....|..|.
T Consensus 1091 L~~~~~---~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~~~el~~~i~~~a~~~~--a~~~i~tv~~~~~~l~~l~~f~ 1165 (1591)
T KOG1831|consen 1091 LLNDSR---KNDESLAAFIQQLNEIGVLSTDDLLTQFFRADLELCVVIFLEASLIT--ALVQICTVYAFICTLEMLDGFV 1165 (1591)
T ss_pred HHhccc---cchHHHHHHHHHHHHcCcccchHHHHHHHHhhhhhhHHHHHHhcccc--cchhhhhHHHHHHHHHHHHHHh
Confidence 999864 467899999999999999999999999999999999988 3321 2222 46888888888888888
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcchhhhhcCCCCccHHHHHHHHhhhhCCCCcchhhhHHHHHHHHHHHHhhcCC
Q psy1277 948 GSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRP 1027 (1312)
Q Consensus 948 ~~~~~~~~~~k~~~L~kiL~iiv~VL~~Dhe~~~~~FnqrPyfRlFs~LL~El~~~~~~l~~~~~~~l~aFa~~~~~LqP 1027 (1312)
+ ..+|.+||+||+++|+||+++||+++|+.|||+||||+|+++|.||..++.+++...+++++||+++||.|||
T Consensus 1166 d------~~tk~dl~~KI~~livgv~akdHs~~~e~f~~~~y~Rlf~~ll~E~~~~~~~le~~~~~i~SaF~~tfhalqp 1239 (1591)
T KOG1831|consen 1166 D------LPTKIDLFNKILNLIVGVFAKDHSERGEYFNQCPYFRLFSMLLPELMTADSVLEPISLDILSAFKNTFHALQP 1239 (1591)
T ss_pred c------CchHHHHHHHHHHHHHHHHhcchHHhhhhHhhCcHhHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHhCc
Confidence 7 2689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhCCCCCCCchhHHHHHhhhhhhHhhhhhcCCCCCChHH
Q psy1277 1028 SKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPL 1107 (1312)
Q Consensus 1028 ~~~PgFafaWLeLISHR~f~~~~~~~~~~~~~~~~~~~~l~~~~p~~~pgf~~aw~~lishr~F~p~lL~~~p~~~gW~~ 1107 (1312)
.++|||+||||+|+||| +|+||||.. +++|||+.
T Consensus 1240 ~~~Pgf~fawL~lishr---------------------------------------------~li~~~L~~-~~~k~~~~ 1273 (1591)
T KOG1831|consen 1240 RRFPGFAFAWLELISHR---------------------------------------------GLIPRMLAE-TNQKGWPL 1273 (1591)
T ss_pred ccCcccceeeeecccch---------------------------------------------hHHHHHHHh-ccccccHH
Confidence 99999999999999999 999999997 69999999
Q ss_pred HHHHHHHHHHhhhhhccCcCCCchhHHHHHHHHHHHHHHhccchhhHHHhhhhhhccCCCcchhhhhHhhccCCCCCCCC
Q psy1277 1108 YAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLP 1187 (1312)
Q Consensus 1108 ~~~Ll~~ll~Fl~~~l~~~~l~~~~~~~YkgtlRilLvLlHDfPeFL~~~h~~lc~~iP~~ciQLrNlILsA~P~~m~LP 1187 (1312)
|.+|+++|||||+||+||.+++++++.+|||||||+|||+||||||||+|||.+||.|||+|+||||+||||||++|++|
T Consensus 1274 ~~~llislfkfL~~ylrn~~~~k~~~~lykgTLrVilvllhDfp~fl~~~hy~~~~~iPp~cvqlrniilsafp~~m~lp 1353 (1591)
T KOG1831|consen 1274 YAQLLISLFKFLAPYLRNYELFKPVQLLYKGTLRVILVLLHDFPEFLCEYHYGLCDTIPPNCVQLRNIILSAFPSNMRLP 1353 (1591)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHcchHHhhcccccchHHHHHhhhhccCCCCcHHHHHHHHHHHhccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhhhccCCccccchhhccCcCchhHHHHHHhccCCchhHHHHHHHHHhccCCCCcccchhhHHHHHHHH
Q psy1277 1188 DPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYV 1267 (1312)
Q Consensus 1188 DPf~p~Lkvd~l~ei~~~P~i~~~~~~~l~~~~lk~~vD~yL~~~~p~~~l~~l~~~l~~~~~~g~~yn~~LiNAlVLyV 1267 (1312)
|||++|||||+|||+..+|+++++++. |.+..+|+++|.|+.+++|++|+..++..++..+++|++||..+|||+|+||
T Consensus 1354 dpf~~~lkve~lpe~~~ap~i~~~~~~-i~~~~~~~dl~a~l~s~~~~t~l~~~~~~~~~~~~~~~~~~~~~~naiVlyv 1432 (1591)
T KOG1831|consen 1354 DPFAVNLKVEMLPEGFYAPRILYSITQ-IMPSNFRKDLDARLKSSSPVTFLSCLPQLLQVIKEPGTRYNNQLINAIVLYV 1432 (1591)
T ss_pred CccccccchhhhhhhhcCchhcCCHHH-hcccccCCCHHHHhhccccHhHHHHhhHHHHHhcCccccccHHHHHHHHHHH
Confidence 999999999999999999999999998 6666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCcccCCCchHHHHHHHHhhcCCCcccC
Q psy1277 1268 GTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIR 1310 (1312)
Q Consensus 1268 G~~Ai~~~~~~~~~~~~~~~~~s~~~~i~~~L~~~ld~EgRY~ 1310 (1312)
|++||.+++.++..+++.+++||+||+||+||+.+||+||||+
T Consensus 1433 G~~ai~~~~~~~~~~~~~~it~s~~~~i~~nL~~nld~e~ry~ 1475 (1591)
T KOG1831|consen 1433 GIQAIAHLRRKSQNPSTSTITHSAYMDIFQNLIVNLDTEGRYL 1475 (1591)
T ss_pred HHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcchhhhHH
Confidence 9999999999998888889999999999999999999999997
No 2
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=2.1e-172 Score=1529.72 Aligned_cols=1029 Identities=22% Similarity=0.305 Sum_probs=785.7
Q ss_pred ccccccccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhhhhhhhhhhccCccccccCCC
Q psy1277 2 KRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVDLD 81 (1312)
Q Consensus 2 ~Ras~EpN~H~lY~~~l~~l~~~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG~WLG~iTLarnkPI~~~~l~ 81 (1312)
+|++.|||||+||.++++.++++.||+.+.+.|++.++.||+. +.. +++|+++|||||||||+||||+||||+|+++|
T Consensus 830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~-~~e-s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~ 907 (2005)
T COG5103 830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDY-RCE-SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD 907 (2005)
T ss_pred eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc-ccc-ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence 7999999999999999999999999999999999999999964 433 57999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCceeeEeehhhHHHhhhccccccCCCCchhHHHHHHHHh--hccCCCCcchhHHHHHhhccccccccc
Q psy1277 82 LKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVEIFLASLVTLVG--VQNTLLPSSLHALIEALVALRRTRDAH 159 (1312)
Q Consensus 82 ~K~LL~eay~~g~~~L~~viPFV~KvLe~~~~SkvF~pPNPW~~~il~lL~--~~~~~lKlnLkFEIEvL~~~~~~~~~~ 159 (1312)
||++|+|||+.|| +..|||||||+|++++.|+||||||||+||||+||. |+++++|++||||||+|+
T Consensus 908 Fk~~lve~~~~~R--i~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll--------- 976 (2005)
T COG5103 908 FKKFLVESVECRR--ILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLL--------- 976 (2005)
T ss_pred HHHHHHHHhhcCc--eEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHH---------
Confidence 9999999999997 889999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccccccccccCCCcchh-hhHHHhhhccCCCCCCCCC----chhhhhccccccccccccCCCCCCCCCCCCCCC
Q psy1277 160 SAVALIQKDLVPSYYLKDPDNLK-FSELQLAVTHKKPPPQALT----QPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEP 234 (1312)
Q Consensus 160 k~l~l~~~~i~p~~~l~~~~~~~-~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 234 (1312)
|+|+++++.|+|++.++++...+ .+|.++...---++.|+++ |..++++++.+
T Consensus 977 ~~lnv~~~~ikPs~~~~n~~V~ks~LEke~~EdvL~a~~~d~~~~~~qyi~~~sSq~T---------------------- 1034 (2005)
T COG5103 977 RHLNVELVPIKPSKSLGNHLVLKSRLEKELPEDVLNAKFPDGTDYLAQYIIEDSSQIT---------------------- 1034 (2005)
T ss_pred HhcceeeccCChhhhhCcHHHHHHHHhhhchHHHHhhhccccchHHHHHHHHhhhcch----------------------
Confidence 99999999999999999987653 2333321110002334444 22222111111
Q ss_pred CccccccccccccCCCCceeecccccccccCcchhhHHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHhhcCCCCcchH
Q psy1277 235 RYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEG 314 (1312)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~i~i~~~~~~~~~~p~lk~~v~~Ai~rairEii~pvveRsv~IA~~tT~~lv~KDFa~e~De~ 314 (1312)
+.++.-..... ..|++|++.|+|++++||||+..|||||+.||++||..|++||||+|.|+.
T Consensus 1035 -----------vtD~va~~~g~-------P~PaiK~~~Qlal~~SVrEI~~aVVeks~gIAi~Tt~~l~~KDFa~ev~~s 1096 (2005)
T COG5103 1035 -----------VTDLVARHVGS-------PKPAIKNLTQLALDLSVREICGAVVEKSCGIAIQTTMALFKKDFAMEVEKS 1096 (2005)
T ss_pred -----------HHHHHHHHcCC-------CChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhccChh
Confidence 00111011111 239999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q psy1277 315 RMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKA 394 (1312)
Q Consensus 315 ~~r~aa~~Mv~~LA~sLAlvTcrepL~~si~~~l~~~l~~~l~~~~~~~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA 394 (1312)
++..||++||++||++||+|||+|||++-|.+|+|+...+ +.+... ...+++..++++|++.||.+||+++++|+
T Consensus 1097 ~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~-l~sv~~----~~ae~vd~~~~eN~~va~~lIe~a~~~k~ 1171 (2005)
T COG5103 1097 MLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMK-LCSVLD----FSAEKVDKIAMENQDVACRLIERAGVSKV 1171 (2005)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHH-Hhhhhh----chHHHHHHHHHhchhHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999986655 433211 12345555689999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhhc--CCCcccccccchhhhhCCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCcchhhccc
Q psy1277 395 LPDIDKHLAGEYERRKHARSE--QRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALF 472 (1312)
Q Consensus 395 ~~~id~~l~~~~~~R~~~r~~--~~~f~D~~~~~~~~~~LPe~Lrlk~~Gl~~~Q~~VYEdF~r~~~~~~~~~~~~~~~~ 472 (1312)
+++|+.+++.++..|++||+. ++||+|++...+ +.+||++|+++-||+||||+++||||.|- +-..- +.
T Consensus 1172 ~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aaa~~-slnLps~L~ls~~~~Tpqqf~lyE~fD~l-~ls~i------~~- 1242 (2005)
T COG5103 1172 SESISAEIEHMIVERVRHRKTTPNLPFVDPAAANL-SLNLPSSLELSIGKATPQQFSLYEDFDRL-SLSTI------MG- 1242 (2005)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCccCcccCcc-ccCCCcccccccCCcCHHHhhhhhccccc-ccccc------cc-
Confidence 999999999999999999874 889999997775 68999999999999999999999999763 21000 00
Q ss_pred CCCCCCCCCCCCCccccCccchhhhHH-HH----HHHHHHHHhhhcccccccccccchhHHHHHHHHHHHhhhccchhhH
Q psy1277 473 LPKPEPPPPGPPVSAFNGVDEMGTIYD-KL----ISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAV 547 (1312)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 547 (1312)
.-++.....+. .+.+.+.+++....+ .. .++..++..+.-..+ ++.
T Consensus 1243 h~~~~~~n~~~-Td~adstdal~~nl~nt~e~eAnQta~~yq~n~L~i~----------------------------~ql 1293 (2005)
T COG5103 1243 HIEKIAINAID-TDSADSTDALNNNLNNTVENEANQTALEYQENLLIIK----------------------------AQL 1293 (2005)
T ss_pred ccchhhhhhhc-CChhhhhhhhccccchhhhhHHHHHHHHHHHHhhhhh----------------------------hHH
Confidence 00000000000 000011111111100 00 000000000000000 000
Q ss_pred HHHHHhhhhhcCCcc-hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHhhhhhh
Q psy1277 548 ALIQKLALFQAQPVL-KPLVRTAVERS-IHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGM 625 (1312)
Q Consensus 548 ~~l~~~~l~q~~p~l-~~l~~~aver~-i~e~i~~v~Era~kia~~t~e~iv~Kdfal~~de~~m~~aa~~i~r~L~~~~ 625 (1312)
.++.+ ..|.. +.-|.+-.|+. ++|...|+. ..++.+.+.|+
T Consensus 1294 ~Ql~~-----~~Py~~~~~V~aD~e~~~lkE~~NQ~~-------------------------t~~~~Il~~Ia------- 1336 (2005)
T COG5103 1294 VQLSK-----KIPYSSKKNVIADEEHGLLKEGKNQFE-------------------------TVFRRILESIA------- 1336 (2005)
T ss_pred HHhcc-----cCCcchhhcCcchhhhhHHHhhHHHHH-------------------------HHHHHHHHHhc-------
Confidence 00000 00100 00111111110 111111110 11111222221
Q ss_pred hhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCChhhhhhhhHHHHHHHHHHHHHhhhchhhhhhHHHHHhh
Q psy1277 626 AMITCRDQLQQ-SIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLI 704 (1312)
Q Consensus 626 A~itcrd~L~~-si~~~~~~Lf~~a~~~~~~ll~~~~~~~~~~e~~~~~re~~~~~l~~L~~~~~~~~~~~~keVt~wlv 704 (1312)
..|++.. .+|...+.+++. +..+ .++|+...+|+.+|.. +-.++|+|.|||+
T Consensus 1337 ----~sd~~~l~c~q~c~~il~~~------------skSp-------~~~evls~~lEkic~~----S~kt~k~V~~wl~ 1389 (2005)
T COG5103 1337 ----SSDDKDLECIQLCRYILGHL------------SKSP-------SKEEVLSRCLEKICKI----SFKTQKEVLGWLI 1389 (2005)
T ss_pred ----cchhhHHHHHHHHHHHHhcc------------ccCc-------hHHHHHHHHHHHHHhH----hHHHhhhhheeee
Confidence 1133322 233333333332 2222 6789999999999986 5889999999999
Q ss_pred hccccccccHHHHHHHHHhccCCchHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q psy1277 705 ECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIA 784 (1312)
Q Consensus 705 ~a~derk~n~~vi~~Lir~~Li~~~elD~~Lak~i~~~~~~~av~Fa~~lv~~~l~~~~~~~~~~~~Df~~tleaL~~~~ 784 (1312)
|+.|.||||+|++.+||+++||+..|+|.+|++.+.+.+. .+.+||+.|++..+.+|. |+.++.||.+|+|.|+.-.
T Consensus 1390 ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~g-nvtdFai~Ll~~~V~~e~--pi~~~~dFI~tLe~la~s~ 1466 (2005)
T COG5103 1390 YSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLADG-NVTDFAIALLASLVTAEV--PICTVYDFICTLEMLAGSS 1466 (2005)
T ss_pred ecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhcccccc-chHHHHHHHHHHHhccCC--ceeeHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999988754 489999999999999997 7899999999999987633
Q ss_pred hcCCCChhhHHHHHHHHhccCCCCcchhccCcCcccccCCCCccccccCCCCcccccccccccccCCCCCCCCChHHHHH
Q psy1277 785 SHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTE 864 (1312)
Q Consensus 785 ~~~~~~~~~l~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~q~~~~~~~~dp~~l~eq~~ 864 (1312)
+ +.+.++++++...+.. .-+++ - ...+.||+.
T Consensus 1467 d------~~vk~f~~~~~~tm~~-----~v~kg--------------------------n-----------Kqq~ndqi~ 1498 (2005)
T COG5103 1467 D------PKVKDFFQKISNTMMH-----IVAKG--------------------------N-----------KQQLNDQII 1498 (2005)
T ss_pred C------hhHHHHHHHHHHhhhh-----ccccc--------------------------c-----------cccccceEE
Confidence 3 2356677766642211 00110 0 012568999
Q ss_pred HHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHcCCccCcchHHHHHHHHHHhhhcc----CCCCCccchhhchHHHHHHH
Q psy1277 865 YLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGV----SPTPTRSKMFQTLDAYAKLI 940 (1312)
Q Consensus 865 ~lf~EWv~l~~~~~~~~~~e~~~~~FI~qL~~~GILk~de~~~~FfR~~~E~sV~~----~pt~~~~~~f~~IDA~akLi 940 (1312)
.+|.|||++.++... .+.....|+.||+++|+++..+++..|||+..|.+|.. +|+ +.+|..|||++.||
T Consensus 1499 iVf~ewv~llrn~~~---nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~pt---a~~y~~IDal~sLi 1572 (2005)
T COG5103 1499 IVFSEWVELLRNCRF---NDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERIPT---AYCYLKIDALPSLI 1572 (2005)
T ss_pred EeeHHHHHHHHhccc---ccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcCCc---ccceeeccchHHHH
Confidence 999999999988753 45778899999999999999999999999999999885 666 89999999999999
Q ss_pred HHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhcchhhhhcCCCCccHHHHHHHHhhhhCCCCcchhhhHHHHHHHHHH
Q psy1277 941 ALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCS 1020 (1312)
Q Consensus 941 v~lvk~~~~~~~~~~~~k~~~L~kiL~iiv~VL~~Dhe~~~~~FnqrPyfRlFs~LL~El~~~~~~l~~~~~~~l~aFa~ 1020 (1312)
+.++++.|. .+.++..|++||+++|++|+.+||..+++.||||||||+||++|+||........+.-..+-+.|-+
T Consensus 1573 ~n~l~~eG~----te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~y~ 1648 (2005)
T COG5103 1573 KNRLYEEGS----TEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVVYS 1648 (2005)
T ss_pred HHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH
Confidence 999999773 3457779999999999999999999999999999999999999999964322222222233344444
Q ss_pred HHhhcCCCCCCchhhHHHHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhCCCCCCCchhHHHHHhhhhhhHhhhhhcCC
Q psy1277 1021 VLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITP 1100 (1312)
Q Consensus 1021 ~~~~LqP~~~PgFafaWLeLISHR~f~~~~~~~~~~~~~~~~~~~~l~~~~p~~~pgf~~aw~~lishr~F~p~lL~~~p 1100 (1312)
+|.+|||..+|||+||||+|+|| |+.+|+||++ |
T Consensus 1649 ~f~alqP~~fPgFtfawl~llSH---------------------------------------------~~llP~vL~v-~ 1682 (2005)
T COG5103 1649 IFEALQPSRFPGFTFAWLELLSH---------------------------------------------KFLLPKVLLV-N 1682 (2005)
T ss_pred HHHHcCcccCCchHHHHHHHHHh---------------------------------------------hhhhhhhhhc-c
Confidence 45555555555555555555555 4999999997 8
Q ss_pred CCCChHHHHHHHHHHHHhhhhhccCcCCCchhHHHHHHHHHHHHHHhccchhhHHHhhhhhhccCCCcchhhhhHhhccC
Q psy1277 1101 HQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAF 1180 (1312)
Q Consensus 1101 ~~~gW~~~~~Ll~~ll~Fl~~~l~~~~l~~~~~~~YkgtlRilLvLlHDfPeFL~~~h~~lc~~iP~~ciQLrNlILsA~ 1180 (1312)
+++||..|..+|+++|||++ +++..++..++++|+|+||++||++||||.||+++||++...+|+.|+||||+|||||
T Consensus 1683 Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iLv~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~ 1760 (2005)
T COG5103 1683 NDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAY 1760 (2005)
T ss_pred chhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheeeeeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 99999999999999999998 8888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccchhhhccCCccccchhhccCcCchhHHHHHHhccCCch---hHHHHHHHHHhccCCCCcc---
Q psy1277 1181 PGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPV---TFLAEVRAAVQVSHEPGSR--- 1254 (1312)
Q Consensus 1181 P~~m~LPDPf~p~Lkvd~l~ei~~~P~i~~~~~~~l~~~~lk~~vD~yL~~~~p~---~~l~~l~~~l~~~~~~g~~--- 1254 (1312)
|++|.+||||..||||+++|+|+..|.++.|....+ .++++.+| |+.+..+ +.++.+...+......|++
T Consensus 1761 Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~~~s~~d--Le~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~ 1836 (2005)
T COG5103 1761 PSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EGQNSFFD--LEACLRSALQNRTSVKVTDLYIGKNTPLWVYL 1836 (2005)
T ss_pred cccCcCCCchhcccccccChHhhhhhHHhcccccch--hhcccchh--hHHHhhhhhhHHHHHHHHHhhccccCceeeee
Confidence 999999999999999999999999999999865555 57999999 7665544 2233333333333345543
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCchHHHHHHHHhhcCCCcccC
Q psy1277 1255 YNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIR 1310 (1312)
Q Consensus 1255 yn~~LiNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~s~~~~i~~~L~~~ld~EgRY~ 1310 (1312)
++...|-++|.|+|++++.. .++.|.++|+++.++..+....|++-||+
T Consensus 1837 ~dn~~~~~~V~h~~~es~~~-------~~~~f~~ks~~~t~l~~~~r~g~~~~rY~ 1885 (2005)
T COG5103 1837 IDNLNEMDAVSHTVVESIKF-------MIERFMHKSEILTMLWIRMRAGGPPKRYF 1885 (2005)
T ss_pred eccHHHHHHHHHHHhhhHHH-------HHHHHhccccHHHHHHHHHhcCCCchhhH
Confidence 36789999999999999743 23469999999999999999999999996
No 3
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=100.00 E-value=1.1e-72 Score=656.58 Aligned_cols=269 Identities=48% Similarity=0.852 Sum_probs=240.8
Q ss_pred HHhhhhCCCCc--chhhhH--HHHHHHHHHHHhhcCCCCCCchhhHHHHHHHhhhhhhhhhhcccchhHHHHHHHHhhhh
Q psy1277 995 MLFLELNVPDP--VLEAIN--FQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHIL 1070 (1312)
Q Consensus 995 ~LL~El~~~~~--~l~~~~--~~~l~aFa~~~~~LqP~~~PgFafaWLeLISHR~f~~~~~~~~~~~~~~~~~~~~l~~~ 1070 (1312)
||||||+..+. .....+ .+++.+||++|+.|||..+|||+|||++|||||
T Consensus 1 ~ll~e~~~~~~~~~~~~~~~~~~~~~~fa~~l~~lqP~~~PgF~faWl~LisHR-------------------------- 54 (379)
T PF04054_consen 1 SLLCELHAISIEDSLESEELDRQFLLAFASFLHSLQPLYFPGFAFAWLELISHR-------------------------- 54 (379)
T ss_pred CeeeecccCcccccchhhhhHHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHH--------------------------
Confidence 57899984332 333333 477777777777777777777777777777777
Q ss_pred CCCCCCCchhHHHHHhhhhhhHhhhhhcCCCCCChHHHHHHHHHHHHhhhhhccCcCCCchhHHHHHHHHHHHHHHhccc
Q psy1277 1071 RPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDF 1150 (1312)
Q Consensus 1071 ~p~~~pgf~~aw~~lishr~F~p~lL~~~p~~~gW~~~~~Ll~~ll~Fl~~~l~~~~l~~~~~~~YkgtlRilLvLlHDf 1150 (1312)
+|||+||+..|+++||+.|++||+++|+|+++|+|+.+++++++++||||||++|||+|||
T Consensus 55 -------------------~Flp~lL~~~~~~~gW~~~~~Ll~~ll~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDf 115 (379)
T PF04054_consen 55 -------------------MFLPKLLRNSPDQKGWPAYTRLLIDLLKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDF 115 (379)
T ss_pred -------------------HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHccc
Confidence 9999999955899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhhccCCCcchhhhhHhhccCCCCCCCCCCCCCCCCccchhhhccCCccccchhhccCcCchhHHHHHHhc
Q psy1277 1151 PEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLK 1230 (1312)
Q Consensus 1151 PeFL~~~h~~lc~~iP~~ciQLrNlILsA~P~~m~LPDPf~p~Lkvd~l~ei~~~P~i~~~~~~~l~~~~lk~~vD~yL~ 1230 (1312)
|||||+||++||++||++|+||||+||||||++|+|||||+||+|||++|||+++|.|.+|++..|+..|||++||+||+
T Consensus 116 PeFL~~~h~~lc~~iP~~ciQLrNiILsA~P~~~~lpDPf~~~lkvd~l~e~~~~P~i~~d~~~~L~~~~lk~~vd~~l~ 195 (379)
T PF04054_consen 116 PEFLCEYHFSLCDVIPPHCIQLRNIILSAFPRNMKLPDPFTPGLKVDRLPEIKQAPKILSDPTEDLQQAGLKKPVDQYLR 195 (379)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHhCCCCCCCCCCCCCCccchhchhhccCCccccchhhhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhccCC--------CCcccchhhHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCchHHHHHHHHhh
Q psy1277 1231 TRSPVTFLAEVRAAVQVSHE--------PGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVD 1302 (1312)
Q Consensus 1231 ~~~p~~~l~~l~~~l~~~~~--------~g~~yn~~LiNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~s~~~~i~~~L~~~ 1302 (1312)
++.+.++++.|.++++.++. .|++||+++|||+|+|||++|+.+.+.++. +..|+++|++|++|++|+++
T Consensus 196 ~~~~~~~l~~i~~~l~~~~~~~~~~~g~~~~~~n~~linalVlyvg~~a~~~~~~~~~--~~~f~~~s~~~~ll~~Li~~ 273 (379)
T PF04054_consen 196 NGPSESLLAQILHKLQLPEPEETNGFGFDGVKYNVKLINALVLYVGIQAVAEAQKKSS--APSFNTKSPHVTLLSKLIHE 273 (379)
T ss_pred hCCCHHHHHHHHHHhcCCccccccccCCCCccccHHHHHHHHHHHhHHHHHHHhccCC--CccccccChHHHHHHHHHHh
Confidence 95556889999999988762 468999999999999999999977665443 34689999999999999999
Q ss_pred cCCCcccC
Q psy1277 1303 LDTGATIR 1310 (1312)
Q Consensus 1303 ld~EgRY~ 1310 (1312)
+|+||||+
T Consensus 274 ld~E~RY~ 281 (379)
T PF04054_consen 274 LDPEGRYY 281 (379)
T ss_pred CCHHHHHH
Confidence 99999997
No 4
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=1.9e-46 Score=384.73 Aligned_cols=147 Identities=47% Similarity=0.754 Sum_probs=140.0
Q ss_pred CcchhhHHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHH
Q psy1277 265 QPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSI 344 (1312)
Q Consensus 265 ~p~lk~~v~~Ai~rairEii~pvveRsv~IA~~tT~~lv~KDFa~e~De~~~r~aa~~Mv~~LA~sLAlvTcrepL~~si 344 (1312)
||+||++|+.|++|||||||.||||||++||++||++||+||||+|+||++||+|||+||++||||||+|||||||+.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHhhhh
Q psy1277 345 KANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARS 414 (1312)
Q Consensus 345 ~~~l~~~l~~~l~~~~~~~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA~~~id~~l~~~~~~R~~~r~ 414 (1312)
.+|||++|.+.... ++++++|+++.++++||+||||++|||+|+|||+++||++|+++|+.||+||+
T Consensus 81 ~~~l~~~l~~~~~~---~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGS---TEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCC---chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988864322 24578999999999999999999999999999999999999999999999985
No 5
>KOG1831|consensus
Probab=99.86 E-value=4.2e-21 Score=238.58 Aligned_cols=91 Identities=44% Similarity=0.657 Sum_probs=87.1
Q ss_pred hcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHhhhhhhhhhhhhHHHHH
Q psy1277 557 QAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQ 636 (1312)
Q Consensus 557 q~~p~l~~l~~~aver~i~e~i~~v~Era~kia~~t~e~iv~Kdfal~~de~~m~~aa~~i~r~L~~~~A~itcrd~L~~ 636 (1312)
-.||..|++++.|+++++.|++.+|+||+++||..|||++++||||+++|+.+++.+++.|+|.+++++||+||||+|..
T Consensus 618 ~~~P~~Kh~~~~Aleqsv~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~ 697 (1591)
T KOG1831|consen 618 RPHPDIKHRVQEALEQSVVEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKV 697 (1591)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1277 637 SIKANLKHLFT 647 (1312)
Q Consensus 637 si~~~~~~Lf~ 647 (1312)
+++.++..++.
T Consensus 698 am~~nl~~~~~ 708 (1591)
T KOG1831|consen 698 AMSSNLVLAAL 708 (1591)
T ss_pred HHHhhHHHHHh
Confidence 99888777766
No 6
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=99.63 E-value=1.3e-15 Score=157.24 Aligned_cols=90 Identities=50% Similarity=0.821 Sum_probs=87.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy1277 559 QPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSI 638 (1312)
Q Consensus 559 ~p~l~~l~~~aver~i~e~i~~v~Era~kia~~t~e~iv~Kdfal~~de~~m~~aa~~i~r~L~~~~A~itcrd~L~~si 638 (1312)
||.|+.++..|++|+++|++.|++||++++|..||+++++|||+++||+.+|+.++|.|+++|++++|++||||+|..++
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy1277 639 KANLKHLFTT 648 (1312)
Q Consensus 639 ~~~~~~Lf~~ 648 (1312)
..++++++.+
T Consensus 81 ~~~l~~~l~~ 90 (147)
T PF12842_consen 81 QNNLRSLLSQ 90 (147)
T ss_pred HHHHHHHHHh
Confidence 9999888764
No 7
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=99.29 E-value=3.1e-10 Score=140.63 Aligned_cols=92 Identities=28% Similarity=0.450 Sum_probs=87.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy1277 559 QPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSI 638 (1312)
Q Consensus 559 ~p~l~~l~~~aver~i~e~i~~v~Era~kia~~t~e~iv~Kdfal~~de~~m~~aa~~i~r~L~~~~A~itcrd~L~~si 638 (1312)
-|.+|.+.+.|++.+++|++..|+||+..+|..||..+++||||++.|+++...+|..|+++|++.+|++||+|+|..-|
T Consensus 1047 ~PaiK~~~Qlal~~SVrEI~~aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i 1126 (2005)
T COG5103 1047 KPAIKNLTQLALDLSVREICGAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACI 1126 (2005)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1277 639 KANLKHLFTTAI 650 (1312)
Q Consensus 639 ~~~~~~Lf~~a~ 650 (1312)
+.++++++.+-.
T Consensus 1127 ~~n~rs~a~~l~ 1138 (2005)
T COG5103 1127 SGNVRSYAMKLC 1138 (2005)
T ss_pred hccHHHHHHHHh
Confidence 999998887643
No 8
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=97.23 E-value=0.00019 Score=85.53 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=61.4
Q ss_pred chhHHHHHHHHhhhhCCCCCCCchhHHHHHhhhhhhHhhhhhcCCCCCChHHHHHHHHHHHHhhhhhccCc---CCCchh
Q psy1277 1056 HQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNV---ELSKPN 1132 (1312)
Q Consensus 1056 ~~~~~~~~~~~l~~~~p~~~pgf~~aw~~lishr~F~p~lL~~~p~~~gW~~~~~Ll~~ll~Fl~~~l~~~---~l~~~~ 1132 (1312)
+.+++.+||++||.+||..+|||+|||++|| --| .|+-..+++. .-=...
T Consensus 21 ~~~~~~~fa~~l~~lqP~~~PgF~faWl~Li-----sHR----------------------~Flp~lL~~~~~~~gW~~~ 73 (379)
T PF04054_consen 21 DRQFLLAFASFLHSLQPLYFPGFAFAWLELI-----SHR----------------------MFLPKLLRNSPDQKGWPAY 73 (379)
T ss_pred HHHHHHHHHHHHHhcCCccCcchHHHHHHHH-----HHH----------------------HHHHHHHhcCCCCCChHHH
Confidence 4589999999999999999999999999983 111 1444444421 111223
Q ss_pred HHHHHHHHHHHHHHhccc--hhhHHHhhh-------hhhccCCCcchhhhhHhhccCCCC
Q psy1277 1133 LTFYKGVLRVLLVLLHDF--PEFLCDYHY-------QFCDVIPANCIQMRNLILSAFPGN 1183 (1312)
Q Consensus 1133 ~~~YkgtlRilLvLlHDf--PeFL~~~h~-------~lc~~iP~~ciQLrNlILsA~P~~ 1183 (1312)
..+-...|+.+=-.+.+. ++....+|- .|+.-.|.-.+.=-.-+.+++|.+
T Consensus 74 ~~Ll~~ll~Fl~~~l~~~~~~~~~~~lYkg~LRillvL~HDfPeFL~~~h~~lc~~iP~~ 133 (379)
T PF04054_consen 74 TRLLIDLLKFLGPYLKNEELSDAIKVLYKGTLRILLVLLHDFPEFLCEYHFSLCDVIPPH 133 (379)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcChh
Confidence 334444444444333332 233333332 466677777666666677777776
No 9
>KOG1467|consensus
Probab=83.37 E-value=3.5 Score=50.22 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhHhHhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q psy1277 274 TAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFT 353 (1312)
Q Consensus 274 ~Ai~rairEii~pvveRsv~IA~~tT~~lv~KDFa~e~De~~~r~aa~~Mv~~LA~sLAlvTcrepL~~si~~~l~~~l~ 353 (1312)
..+.-+-.. |+..--| -||.+-+-+.|.|||-+++.. .=.+.|...+.+=+++.|---||..||.|.+| +|.
T Consensus 240 Lglq~a~~k-I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiR-flK 311 (556)
T KOG1467|consen 240 LGLQYALGK-ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIR-FLK 311 (556)
T ss_pred HHHHHhhcc-cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHH-HHH
Confidence 333333333 3444444 499999999999999999976 45677888888888877666899999999999 455
Q ss_pred Hhhh---cCCch--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q psy1277 354 TAIT---NATPQ--QKELMDQTVTICAGDNMELACAFIQKTAIEKA 394 (1312)
Q Consensus 354 ~~l~---~~~~~--~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA 394 (1312)
+.+. .++++ -++.+-..|.-.+++++.+|-..|-+.|.+|.
T Consensus 312 ~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI 357 (556)
T KOG1467|consen 312 NEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKI 357 (556)
T ss_pred HHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5443 23332 24556666777789999999999999988885
No 10
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=34.41 E-value=71 Score=38.18 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=54.6
Q ss_pred hhHhhhhhcCCC-CCChHHHHHHHHHHHHhhhhhccCcCCCchhHHHHHHHHHHHHHH------------hccchhhHHH
Q psy1277 1090 TFIGRMLVITPH-QKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVL------------LHDFPEFLCD 1156 (1312)
Q Consensus 1090 ~F~p~lL~~~p~-~~gW~~~~~Ll~~ll~Fl~~~l~~~~l~~~~~~~YkgtlRilLvL------------lHDfPeFL~~ 1156 (1312)
+|...|+...|+ .--|..+..++-+++++.+||-- ..++|+||+.+-+. .+|||+||-
T Consensus 112 ~f~~dL~~G~~qkhP~l~~v~~~l~~~lr~fGpF~s--------~~IikSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR- 182 (357)
T cd00686 112 NYFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCS--------LNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLR- 182 (357)
T ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHhhhccCCCCCCcccchHHH-
Confidence 556666664443 34688999999999999999955 77899999998765 258999986
Q ss_pred hhhhhhccCCCcchhhhhHhhccCCCCC
Q psy1277 1157 YHYQFCDVIPANCIQMRNLILSAFPGNM 1184 (1312)
Q Consensus 1157 ~h~~lc~~iP~~ciQLrNlILsA~P~~m 1184 (1312)
-.+.++..| -.+.||+..
T Consensus 183 ----~ksGl~E~y------A~FiFPk~~ 200 (357)
T cd00686 183 ----RMNGLGHCV------GASLWPKEQ 200 (357)
T ss_pred ----hccCCccee------EEEecchhh
Confidence 334444443 466777763
No 11
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=29.39 E-value=75 Score=33.92 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=88.2
Q ss_pred ccccccccchHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhhhhhhhhhhccCccccccC
Q psy1277 2 KRASIEFNFHVLYSNFLDEIKL--PDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVD 79 (1312)
Q Consensus 2 ~Ras~EpN~H~lY~~~l~~l~~--~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG~WLG~iTLarnkPI~~~~ 79 (1312)
++|-.+|++-.+|..++..++. +.+-..+++.++......+.... ..++...+|+--+||.+..-.=-+..
T Consensus 43 ~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~~e~~~----~~~~~~~~~~i~fl~eL~~~~~i~~~--- 115 (200)
T smart00543 43 EKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEEFEKGLESEE----ESDKQRRLGLVRFLGELYNFQVLTSK--- 115 (200)
T ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHhHHHHHHHHHHcccCcHH---
Confidence 4677899999999999999975 77888888888888777654322 35566778888888888765544432
Q ss_pred CChHHHHHHHHHhCCc----eeeEeehhhHHHhhhccccccCCCCchhHHH-HHHHHh-hc-cC---CCCcchhHHHHHh
Q psy1277 80 LDLKSLVAEAYKKGQQ----ELLYVVPFVAKVMESCSRSKLISEVEIFLAS-LVTLVG-VQ-NT---LLPSSLHALIEAL 149 (1312)
Q Consensus 80 l~~K~LL~eay~~g~~----~L~~viPFV~KvLe~~~~SkvF~pPNPW~~~-il~lL~-~~-~~---~lKlnLkFEIEvL 149 (1312)
.+.+++-+--+.+.. +=..-+=.+|.+|+.|...--+ +.+|=.|. ++..+. |. .. .+....+|-+|-+
T Consensus 116 -~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l 193 (200)
T smart00543 116 -IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELL 193 (200)
T ss_pred -HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 122222222222210 0013455678888888554443 55555544 445555 32 22 5777888888877
Q ss_pred h
Q psy1277 150 V 150 (1312)
Q Consensus 150 ~ 150 (1312)
+
T Consensus 194 ~ 194 (200)
T smart00543 194 I 194 (200)
T ss_pred H
Confidence 6
No 12
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.56 E-value=4.4e+02 Score=27.57 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=31.1
Q ss_pred ccccccHHHHHHHHHhccCCchHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhc
Q psy1277 708 EEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVE 761 (1312)
Q Consensus 708 derk~n~~vi~~Lir~~Li~~~elD~~Lak~i~~~~~~~av~Fa~~lv~~~l~~ 761 (1312)
+++.+++++.. .|+.+-....+-=.+|-|-+..+.++...-+|..|++.|+-.
T Consensus 17 ~dw~~ileicD-~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkN 69 (141)
T cd03565 17 EDWGLNMEICD-IINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKN 69 (141)
T ss_pred cCHHHHHHHHH-HHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34455555555 334454445555555556565444566677888888888764
No 13
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=24.33 E-value=60 Score=31.88 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhh-----hhhhhh
Q psy1277 12 VLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLG-----HWLGML 67 (1312)
Q Consensus 12 ~lY~~~l~~l~~~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG-----~WLG~i 67 (1312)
.-|++.++--.+|+.-++|+.-+.--|-.+|++......-+|-.++|.|| -|||+.
T Consensus 48 ~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 48 KNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSEDGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred HHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhhhHHHHhhhHHHHHHHHHHH
Confidence 45899999999999999999999999999999987777778899999998 488764
No 14
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.53 E-value=1.9e+02 Score=30.94 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHhhhhhccCcCCCchhHHHHHHHHHHHHHHhccchhhHHH-----------hhhhhhc--cCCCc
Q psy1277 1102 QKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCD-----------YHYQFCD--VIPAN 1168 (1312)
Q Consensus 1102 ~~gW~~~~~Ll~~ll~Fl~~~l~~~~l~~~~~~~YkgtlRilLvLlHDfPeFL~~-----------~h~~lc~--~iP~~ 1168 (1312)
+.||..|.+--...++=+-..+++ .-+..+...-=.+|..++...++|||+--| ....+++ ..|..
T Consensus 55 ~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~ 133 (165)
T PF08167_consen 55 QCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPET 133 (165)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHH
Confidence 446877744333333333334444 233446667777888888999999998655 3455666 66677
Q ss_pred chhhhhHhhccCCCCCCCCCCCCC
Q psy1277 1169 CIQMRNLILSAFPGNMRLPDPFTP 1192 (1312)
Q Consensus 1169 ciQLrNlILsA~P~~m~LPDPf~p 1192 (1312)
|...-.-++..||...| ||.-
T Consensus 134 ~l~~L~~ll~~~ptt~r---p~~~ 154 (165)
T PF08167_consen 134 ALDALATLLPHHPTTFR---PFAN 154 (165)
T ss_pred HHHHHHHHHHHCCcccc---chHH
Confidence 77777778888888777 6643
No 15
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.36 E-value=5.8e+02 Score=26.87 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHcCCc
Q psy1277 858 GLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGIL 900 (1312)
Q Consensus 858 ~l~eq~~~lf~EWv~l~~~~~~~~~~e~~~~~FI~qL~~~GIL 900 (1312)
..++++-.++.+|..-+.+.. .-+.+...-..|..+|+-
T Consensus 96 ~Vk~kil~li~~W~~~f~~~~----~l~~i~~~y~~L~~~G~~ 134 (144)
T cd03568 96 TVKEKLREVVKQWADEFKNDP----SLSLMSDLYKKLKNEGPD 134 (144)
T ss_pred HHHHHHHHHHHHHHHHhCCCc----ccHHHHHHHHHHHHcCCC
Confidence 467999999999998886432 223455666778888873
Done!