Query psy1277
Match_columns 1312
No_of_seqs 177 out of 295
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 19:14:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1277.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1277hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uw4b_ a.118.1.14 (B:) Regula 25.3 45 0.0033 33.7 6.5 142 2-150 48-213 (248)
2 d1elka_ a.118.9.2 (A:) Tom1 pr 21.2 1.5E+02 0.011 27.5 8.9 37 859-899 113-149 (153)
3 d1ujka_ a.118.9.2 (A:) ADP-rib 20.8 1E+02 0.0073 28.5 7.5 36 859-901 110-145 (145)
4 d1dvpa1 a.118.9.2 (A:1-145) Hr 14.8 2.5E+02 0.018 25.5 8.7 37 859-899 102-138 (145)
5 d1mhqa_ a.118.9.2 (A:) ADP-rib 9.2 3.2E+02 0.024 24.6 7.5 39 858-903 102-140 (143)
6 d1cqxa1 a.1.1.2 (A:1-150) Flav 6.1 7.7E+02 0.056 21.5 8.7 47 358-404 89-135 (150)
7 d1cg5a_ a.1.1.2 (A:) Hemoglobi 5.5 3.5E+02 0.025 24.0 5.6 40 1002-1044 51-90 (141)
8 d1b0na1 a.34.1.1 (A:74-108) Si 5.5 1.7E+02 0.012 20.4 2.3 16 441-456 15-30 (35)
9 d2o62a2 b.60.1.9 (A:1-132) Unc 5.5 36 0.0026 31.4 -1.8 14 55-68 7-20 (132)
10 d1y9ba1 a.43.1.9 (A:3-83) Hypo 5.2 2.2E+02 0.016 23.6 3.4 41 360-403 11-51 (81)
No 1
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.28 E-value=45 Score=33.71 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=92.1
Q ss_pred ccccccccchHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHhcccccccccchhhHHHhhhhhhhhhhhccCccccccC
Q psy1277 2 KRASIEFNFHVLYSNFLDEIK--LPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNRPILMVD 79 (1312)
Q Consensus 2 ~Ras~EpN~H~lY~~~l~~l~--~~~l~~~vl~~T~~~i~~lL~s~k~~~~~~eRs~LKNLG~WLG~iTLarnkPI~~~~ 79 (1312)
+-+..+++|=.+|+.++..|. .|++-..+++.+...++.-+...+ ..++...-+.-.++|-+..-+=-|...-.
T Consensus 48 ~~~~~~~~~i~~yA~l~a~L~~~~~~f~~~~id~l~e~f~~~~e~~~----~~~~~r~~~~v~figeLy~~~~v~~~~i~ 123 (248)
T d1uw4b_ 48 NIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQ----PKFNQRRISSAKFLGELYNYRMVESAVIF 123 (248)
T ss_dssp CGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred hhhcCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 346788999999999999996 478888888888888888775432 23334333455899999877666555444
Q ss_pred CChHHHHHHHHHhCCceee-------EeehhhHHHhhhccccccCCCCchhHH---HHHHHHh-h-----------ccCC
Q psy1277 80 LDLKSLVAEAYKKGQQELL-------YVVPFVAKVMESCSRSKLISEVEIFLA---SLVTLVG-V-----------QNTL 137 (1312)
Q Consensus 80 l~~K~LL~eay~~g~~~L~-------~viPFV~KvLe~~~~SkvF~pPNPW~~---~il~lL~-~-----------~~~~ 137 (1312)
=-+..||..+++.+...-. .-|=.+|++|+.|..+--- ++|.. ..+..+- | +...
T Consensus 124 ~~l~~Ll~~~~~~~~~~~~~d~~~d~~rIe~l~~lL~t~G~~l~~---~~~~~~l~~~~~~fq~y~~~~~~~~~~~~~~~ 200 (248)
T d1uw4b_ 124 RTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDR---GSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHP 200 (248)
T ss_dssp HHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSC
T ss_pred HHHHHHHhcCCCcccccccCCCCcchhHHHHHHHHHHHHhHHhcC---ccchhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4466777666665420000 0155799999999877422 33322 2222222 1 1345
Q ss_pred CCcchhHHHHHhh
Q psy1277 138 LPSSLHALIEALV 150 (1312)
Q Consensus 138 lKlnLkFEIEvL~ 150 (1312)
+..-++|-|+-++
T Consensus 201 lp~ri~f~i~dll 213 (248)
T d1uw4b_ 201 FPIDIDYMISDTL 213 (248)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6778999999888
No 2
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.21 E-value=1.5e+02 Score=27.54 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHcCC
Q psy1277 859 LFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGI 899 (1312)
Q Consensus 859 l~eq~~~lf~EWv~l~~~~~~~~~~e~~~~~FI~qL~~~GI 899 (1312)
.++++-.++.+|-.-+.+.. .-..+...-..|..+|+
T Consensus 113 Vk~kil~li~~W~~~f~~~p----~~~~i~~~y~~Lk~~G~ 149 (153)
T d1elka_ 113 VHDKVLNLIQSWADAFRSSP----DLTGVVTIYEDLRRKGL 149 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCCc----cchHHHHHHHHHHHCCC
Confidence 67999999999998885432 23455555667777886
No 3
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.79 E-value=1e+02 Score=28.53 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHcCCcc
Q psy1277 859 LFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILK 901 (1312)
Q Consensus 859 l~eq~~~lf~EWv~l~~~~~~~~~~e~~~~~FI~qL~~~GILk 901 (1312)
.++++-.++.+|-.-+ |. ...+..--..|..+||++
T Consensus 110 Vk~kil~li~~W~~~f--p~-----~~~~~~~Y~~L~~~Gii~ 145 (145)
T d1ujka_ 110 VKNKILELLYSWTVGL--PE-----EVKIAEAYQMLKKQGIVK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHC--CC-----chHHHHHHHHHHHCCCcC
Confidence 6789999999998766 32 345666677899999975
No 4
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.76 E-value=2.5e+02 Score=25.50 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHcCC
Q psy1277 859 LFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGI 899 (1312)
Q Consensus 859 l~eq~~~lf~EWv~l~~~~~~~~~~e~~~~~FI~qL~~~GI 899 (1312)
.++++-.++..|..-+.+.. .-+.....-..|..+|+
T Consensus 102 Vk~kil~li~~W~~~f~~~~----~~~~i~~~y~~Lk~~G~ 138 (145)
T d1dvpa1 102 VRQKMLELVQTWAYAFRSSD----KYQAIKDTMTILKAKGH 138 (145)
T ss_dssp HHHHHHHHHHHHHHHTTTCS----SCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCc----cchHHHHHHHHHHHCCC
Confidence 57899999999999875432 12345555667778886
No 5
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.21 E-value=3.2e+02 Score=24.65 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHcCCccCc
Q psy1277 858 GLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSD 903 (1312)
Q Consensus 858 ~l~eq~~~lf~EWv~l~~~~~~~~~~e~~~~~FI~qL~~~GILk~d 903 (1312)
..++++-.++.+|-.-|.+ +.....--..|..+|+...|
T Consensus 102 ~Vk~kil~li~~Wa~~f~~-------~~~~~~~y~~Lk~~Gvi~~~ 140 (143)
T d1mhqa_ 102 KVKGRVIEILFSWTVWFPE-------DIKIRDAYQMLKKQGIIKQD 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHHHHHcCC-------CchHHHHHHHHHHCCCCCCC
Confidence 4679999999999988732 12344556678889998643
No 6
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=6.14 E-value=7.7e+02 Score=21.53 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=31.3
Q ss_pred cCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHhHH
Q psy1277 358 NATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAG 404 (1312)
Q Consensus 358 ~~~~~~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA~~~id~~l~~ 404 (1312)
+.++.+-+.+-+++.-+..+.++-.+.-=.+.|=.|+..-|=+.|..
T Consensus 89 gV~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~li~ 135 (150)
T d1cqxa1 89 GVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMG 135 (150)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44565556666666666777776666666667777777777666643
No 7
>d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=5.54 E-value=3.5e+02 Score=24.05 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=28.6
Q ss_pred CCCcchhhhHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHhh
Q psy1277 1002 VPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHR 1044 (1312)
Q Consensus 1002 ~~~~~l~~~~~~~l~aFa~~~~~LqP~~~PgFafaWLeLISHR 1044 (1312)
..++.++.+...++.++..++..|.- |.=..+.|+=..||
T Consensus 51 ~~~~~l~~H~~~v~~~l~~~I~~Ldd---~~~~~~~L~~~~~~ 90 (141)
T d1cg5a_ 51 ACNEQVKKHGKRVMNALADATHHLDN---LHLHLEDLARKHGE 90 (141)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTCTTS---HHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHhhh
Confidence 44567788888899999999988864 33445666655566
No 8
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.46 E-value=1.7e+02 Score=20.45 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHhhh
Q psy1277 441 GGVTPQQMAVYEEFAR 456 (1312)
Q Consensus 441 ~Gl~~~Q~~VYEdF~r 456 (1312)
.|++..|||=|=||.+
T Consensus 15 SGvSK~QFrEflef~k 30 (35)
T d1b0na1 15 SGVSKKQFREFLDYQK 30 (35)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 6999999999999974
No 9
>d2o62a2 b.60.1.9 (A:1-132) Uncharacterized protein All1756 ortholog {Nostoc punctiforme [TaxId: 272131]}
Probab=5.45 E-value=36 Score=31.39 Aligned_cols=14 Identities=43% Similarity=0.940 Sum_probs=10.5
Q ss_pred hHHHhhhhhhhhhh
Q psy1277 55 TLLKNLGHWLGMLT 68 (1312)
Q Consensus 55 s~LKNLG~WLG~iT 68 (1312)
.+++|||.|-|..|
T Consensus 7 ~~~~nlG~W~G~~~ 20 (132)
T d2o62a2 7 CFLQNLGVWEGSFS 20 (132)
T ss_dssp HHHTTCEEEEEEEE
T ss_pred HHhhccceeEEEEE
Confidence 45788888888754
No 10
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}
Probab=5.16 E-value=2.2e+02 Score=23.65 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=30.1
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHhH
Q psy1277 360 TPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLA 403 (1312)
Q Consensus 360 ~~~~~~~~e~~~~~~~~dNl~l~c~~Iekaa~ekA~~~id~~l~ 403 (1312)
+++++++++.|+.+.--.| -..||-.+|.++|-+.|+++=.
T Consensus 11 ~~e~k~li~rAA~l~G~~t---ls~Fv~~aa~~~A~~vi~~~~~ 51 (81)
T d1y9ba1 11 DVDTQDLLAKAAALAGMSS---INSFVLNAAIEKAKQVIEREQA 51 (81)
T ss_dssp CHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHhHh
Confidence 5677899999977621134 3678889999999988876543
Done!