Your job contains 1 sequence.
>psy1277
MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL
GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV
EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN
LKFSELQLAVTHKKPPPQALTQPAINAQSSGAAAQTMAAQSSTPPLTMQQPPEPRYSYTS
VNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAE
QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT
PQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYC
DSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLPKPEPPP
PGPPVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRT
RDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKD
FALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGH
THIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTL
IRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVL
IRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHI
HSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGIL
KSDELITRFFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKIN
LLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCS
VLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAY
AWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVL
RVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLA
DINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELM
NAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIRNS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1277
(1312 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0085436 - symbol:Not1 "Not1" species:7227 "Drosoph... 910 4.5e-274 4
UNIPROTKB|E1BXD4 - symbol:LOC100858397 "Uncharacterized p... 1279 1.1e-242 2
MGI|MGI:2442402 - symbol:Cnot1 "CCR4-NOT transcription co... 1280 1.0e-241 2
UNIPROTKB|G3V7M0 - symbol:Cnot1 "RCG39079" species:10116 ... 1280 2.7e-241 2
UNIPROTKB|F1MHU9 - symbol:CNOT1 "Uncharacterized protein"... 1275 2.7e-241 2
UNIPROTKB|A5YKK6 - symbol:CNOT1 "CCR4-NOT transcription c... 1274 3.5e-241 2
UNIPROTKB|F1RFU3 - symbol:CNOT1 "Uncharacterized protein"... 1270 3.2e-240 2
ZFIN|ZDB-GENE-040915-1 - symbol:cnot1 "CCR4-NOT transcrip... 1262 4.2e-240 2
WB|WBGene00002845 - symbol:let-711 species:6239 "Caenorha... 605 1.7e-174 4
DICTYBASE|DDB_G0276029 - symbol:DDB_G0276029 "putative CC... 607 1.0e-134 5
RGD|1308009 - symbol:Cnot1 "CCR4-NOT transcription comple... 955 4.7e-96 1
GENEDB_PFALCIPARUM|PF11_0049 - symbol:PF11_0049 "hypothet... 477 1.2e-83 5
UNIPROTKB|Q8IIW4 - symbol:PF11_0049 "NOT family protein, ... 477 1.2e-83 5
ASPGD|ASPL0000078074 - symbol:AN4965 species:162425 "Emer... 397 3.5e-72 4
SGD|S000000689 - symbol:CDC39 "Component of the CCR4-NOT ... 314 5.8e-58 5
POMBASE|SPAC20G8.06 - symbol:not1 "CCR4-Not complex subun... 302 1.8e-53 4
CGD|CAL0001252 - symbol:CDC39 species:5476 "Candida albic... 245 1.1e-51 5
UNIPROTKB|Q59R01 - symbol:CDC39 "Potential mRNA deadenyla... 245 1.1e-51 5
>FB|FBgn0085436 [details] [associations]
symbol:Not1 "Not1" species:7227 "Drosophila melanogaster"
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] EMBL:AE013599 GO:GO:0005737
GO:GO:0007095 GO:GO:0048813 GO:GO:0007517 GO:GO:0030014
GO:GO:0000289 KO:K12604 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 UniGene:Dm.4102 GeneID:5740252
KEGG:dme:Dmel_CG34407 CTD:5740252 FlyBase:FBgn0085436 ChiTaRS:NOT1
GenomeRNAi:5740252 NextBio:20891292 RefSeq:NP_001097242.1
RefSeq:NP_724798.3 STRING:A8DY81 EnsemblMetazoa:FBtr0112672
EnsemblMetazoa:FBtr0304957 UCSC:CG34407-RC PhylomeDB:A8DY81
Bgee:A8DY81 Uniprot:A8DY81
Length = 2505
Score = 910 (325.4 bits), Expect = 4.5e-274, Sum P(4) = 4.5e-274
Identities = 167/247 (67%), Positives = 198/247 (80%)
Query: 1059 VLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKF 1118
++SA+ H+L PS PGF +AWLE+++HR F+GR+LV P QKGWPLYAQLL D+FK+
Sbjct: 2133 IVSAFAYTYHLLNPSVAPGFCFAWLELISHRVFLGRILVQIPGQKGWPLYAQLLQDLFKY 2192
Query: 1119 LAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILS 1178
LAPFLRN EL KP YKG LRVLLVLLHDFPEFLCDYH+ FCD IP NC+QMRN+ILS
Sbjct: 2193 LAPFLRNTELGKPVQLLYKGTLRVLLVLLHDFPEFLCDYHFGFCDTIPPNCVQMRNIILS 2252
Query: 1179 AFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFL 1238
AFP NMRLPDPFTPNLKVD L+D + AP++ + + IQPA FKKDLD+YLK R+PVTFL
Sbjct: 2253 AFPRNMRLPDPFTPNLKVDMLSDSSNAPKVLSSYIMNIQPANFKKDLDSYLKARAPVTFL 2312
Query: 1239 AEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHSAHMDIFLN 1298
+E+R +QV+ EPG+RYN LMNA+V+YVGTQAI IR K+ PN IAHSAHMDIF N
Sbjct: 2313 SELRGHLQVTSEPGTRYNMALMNALVMYVGTQAIALIRNKNFVPNTSNIAHSAHMDIFQN 2372
Query: 1299 FAVDLDT 1305
AVDLDT
Sbjct: 2373 LAVDLDT 2379
Score = 765 (274.4 bits), Expect = 4.5e-274, Sum P(4) = 4.5e-274
Identities = 174/437 (39%), Positives = 260/437 (59%)
Query: 646 FTTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIE 705
F +E L +G ++ + E Y+++HLRI+ L + +FG T + +T+C +
Sbjct: 1770 FNLLTRAVEGLTEGLVNMHENMEQMKMYQNIHLRILGLLNN--SFGAPNTERAVTKCFFD 1827
Query: 706 CREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGT 765
REE RYN+EA LI + ++L Q+D L M+NG NYVA++F + LL+ ++++R
Sbjct: 1828 IREEVRYNVEAARALITSHFVNLNQFDGMLRDCMDNGNNYVAISFGIALLERLIMDDRVI 1887
Query: 766 AGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGL 825
V++++ + T+E+L R+ H + PE + ID L + + + + +P N G
Sbjct: 1888 NIVSDNEFMATVELLGRLTQHRHRYPECIVNAIDTLWSGNFNSSS--DYSP----FN-GN 1940
Query: 826 PNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIY--HSPAGVKDP 883
+ +G + +IHSG+ VR D DDPPGL EKTE+LL++WV +Y + +D
Sbjct: 1941 DRY----LSGASHYIHSGMHHVRSC-DTDDPPGLQEKTEFLLKDWVALYTQQNQQSTRDA 1995
Query: 884 NKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVGV------SPT-P---TRSKMFQTL 933
F FV +MN +GILK+D+LITRFFR AT + V P+ P ++K+FQ +
Sbjct: 1996 RN-FGAFVQKMNTYGILKTDDLITRFFRQATHICTDVVYRMFAEPSLPINQAKNKIFQWI 2054
Query: 934 DAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIF 993
DA+ LIA+LV+HSG E N TKINLLNKVLGI+ G LI D E R F Q+ YHR F
Sbjct: 2055 DAFVHLIAMLVRHSG--EAGNPTTKINLLNKVLGIVLGTLIKDHEMRGVSFQQVGYHRFF 2112
Query: 994 IMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVI 1053
+MLF+EL D +LE++ ++SA+ H+L PS PGF +AWLE+++HR F+GR+LV
Sbjct: 2113 MMLFMELCTADVILESLMHSIVSAFAYTYHLLNPSVAPGFCFAWLELISHRVFLGRILVQ 2172
Query: 1054 TPHQKVLSAYCSVLHIL 1070
P QK Y +L L
Sbjct: 2173 IPGQKGWPLYAQLLQDL 2189
Score = 674 (242.3 bits), Expect = 4.5e-274, Sum P(4) = 4.5e-274
Identities = 143/323 (44%), Positives = 202/323 (62%)
Query: 231 PPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVER 290
PPEPRYSY VNV+N I +V+ A P +K +V AVER+I +W+ +V+R
Sbjct: 1463 PPEPRYSYVDVNVSNFQLIGQQLVLPPNTPFLHANPGIKHMVVNAVERTITDWLQPIVDR 1522
Query: 291 AVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKH 350
+++IA T EQI++KDFALD DE RMR+AAH + RNL AGMAMIT +D++ ++I NL
Sbjct: 1523 SIRIACATTEQIIRKDFALDADENRMRTAAHQMVRNLAAGMAMITGKDEIARAISQNLHK 1582
Query: 351 LFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRK 410
+ + N P E+ + + A +N+EL CAFIQKT+ EKA +ID+ L+ ++E RK
Sbjct: 1583 ALLSGL-NGMPSMAEIQAAAMQL-ASENVELVCAFIQKTSAEKAAAEIDRRLSTDFETRK 1640
Query: 411 HARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAA 470
AR E R+ D+Q+LTYQ ER+PE +R+KVG AVY EFAR+IPGFQ +S+RD A
Sbjct: 1641 IAREEGNRFVDAQILTYQQERLPEAVRIKVGAAPATLYAVYSEFARSIPGFQQMSDRDIA 1700
Query: 471 LFLXXXXXXXXXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSS-LHA 529
LF+ + F D M +Y +L S++E F+ T +GV + +S +H
Sbjct: 1701 LFVPKPTDLSQP---NVFANDDSM--VYGELASKMEAFMN---TAIGVPTLQIQASKMHM 1752
Query: 530 LIEALVALRRTRDAHSAVALIQK 552
L+ AL+A RR RD SA L+ +
Sbjct: 1753 LLNALIATRRLRDQESAFNLLTR 1775
Score = 465 (168.7 bits), Expect = 4.5e-274, Sum P(4) = 4.5e-274
Identities = 108/233 (46%), Positives = 147/233 (63%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
+KRAS+EFNFH LY NFLD +K ++ V KET RNIKVLLRSDKG+ NFSDR+LLKNL
Sbjct: 1195 LKRASMEFNFHTLYYNFLDALKNGEINRFVTKETLRNIKVLLRSDKGVINFSDRSLLKNL 1254
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TLGRNRPIL +DLDLKSL+AEAY KGQQELL+VVPFVAK++ES ++S++
Sbjct: 1255 GHWLGMMTLGRNRPILQLDLDLKSLLAEAYHKGQQELLFVVPFVAKILESSAKSRIFRSP 1314
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN 180
+ ++ ++ + L+ E V L +T + +A +++ + YLKDP+
Sbjct: 1315 NPWTMGIMYVLAELHQEPDLKLNLKFEIEV-LCKTLNLE--LAKLRQVI----YLKDPNR 1367
Query: 181 LKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPE 233
E Q++ +P P+ L +P + PP QQPP+
Sbjct: 1368 THRIEEQMS----QPKPKQL-EPVASAPALPREQQSPAQP--PPPPQQQQPPQ 1413
Score = 243 (90.6 bits), Expect = 1.3e-228, Sum P(4) = 1.3e-228
Identities = 46/85 (54%), Positives = 65/85 (76%)
Query: 558 AQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHI 617
A P +K +V AVER+I +W+ +V+R+++IA T EQI++KDFALD DE RMR+AAH +
Sbjct: 1496 ANPGIKHMVVNAVERTITDWLQPIVDRSIRIACATTEQIIRKDFALDADENRMRTAAHQM 1555
Query: 618 ARNLTAGMAMITCRDQLQQSIKANL 642
RNL AGMAMIT +D++ ++I NL
Sbjct: 1556 VRNLAAGMAMITGKDEIARAISQNL 1580
Score = 78 (32.5 bits), Expect = 8.6e-167, Sum P(3) = 8.6e-167
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 109 ESCSRSKLISEVEIFLASLVTLVGVQNTLLPSS-LHALIEALVALRRTRDAHSAVALIQK 167
+S +L S++E F+ T +GV + +S +H L+ AL+A RR RD SA L+ +
Sbjct: 1719 DSMVYGELASKMEAFMN---TAIGVPTLQIQASKMHMLLNALIATRRLRDQESAFNLLTR 1775
Score = 55 (24.4 bits), Expect = 4.2e-39, Sum P(2) = 4.2e-39
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 1027 PSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHILRPSKQPGFAYAWLEIV 1086
P +P ++Y + V++ IG+ LV+ P+ L A + H++ + + WL+ +
Sbjct: 1462 PPPEPRYSYVDVN-VSNFQLIGQQLVLPPNTPFLHANPGIKHMVVNAVERTIT-DWLQPI 1519
Query: 1087 AHRTFIGRMLVITPHQ 1102
R+ R+ T Q
Sbjct: 1520 VDRSI--RIACATTEQ 1533
Score = 42 (19.8 bits), Expect = 1.3e-179, Sum P(4) = 1.3e-179
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 1064 CSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPL-YAQLLID-IFKF 1118
C+VLH+ + E + R + R++V PH G + + +L+ + I+KF
Sbjct: 2405 CAVLHLFAEANSEAIQ----EQIT-RVLLERLIVNRPHPWGLLITFIELIKNPIYKF 2456
>UNIPROTKB|E1BXD4 [details] [associations]
symbol:LOC100858397 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:AADN02051617 EMBL:AADN02051618
IPI:IPI00596498 Ensembl:ENSGALT00000040121 ArrayExpress:E1BXD4
Uniprot:E1BXD4
Length = 2129
Score = 1279 (455.3 bits), Expect = 1.1e-242, Sum P(2) = 1.1e-242
Identities = 283/553 (51%), Positives = 355/553 (64%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 887 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 946
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS
Sbjct: 947 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSV----- 1001
Query: 121 EIFLASLVTLVGVQNTLLP-SSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPD 179
+F + + N L H L + +V + + A S L L P LKD D
Sbjct: 1002 -VFRPPNPWTMAIMNVLAELHQEHDLKKGVVKDQISFLALSCEELGIASLEPGSLLKDKD 1060
Query: 180 NLKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYSYT 239
LK + QL+ KK Q P I T P P+P+YSY
Sbjct: 1061 RLKNLDEQLSAP-KKDVKQPEELPPITTTTASTTPATSTTCTATVP------PQPQYSYH 1113
Query: 240 SVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTA 299
+NV ++G +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T
Sbjct: 1114 DINVYSLGGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTC 1173
Query: 300 EQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNA 359
EQIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F TA+ A
Sbjct: 1174 EQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAA 1233
Query: 360 TPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRY 419
+PQQ+++M+Q A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RRY
Sbjct: 1234 SPQQRDMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRY 1293
Query: 420 CDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLXXXXXX 479
CD VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ L
Sbjct: 1294 CDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTND------LTQPTGF 1347
Query: 480 XXXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRR 539
A+ D++ IYDK ++E+E L S+ + + +L +L+EA+V R
Sbjct: 1348 LAQPMKQAW-ATDDVAQIYDKCMTELEQHLQSIPHTLAMNPQA--QALRSLLEAVVVARN 1404
Query: 540 TRDAHSAVALIQK 552
+RDA +A+ L+QK
Sbjct: 1405 SRDAIAALGLLQK 1417
Score = 1103 (393.3 bits), Expect = 1.1e-242, Sum P(2) = 1.1e-242
Identities = 242/478 (50%), Positives = 313/478 (65%)
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITVIENLLDGHTHIPN- 665
E ++S H +A N A A+ R L+ + A A+ +++ ++G +
Sbjct: 1373 EQHLQSIPHTLAMNPQA-QAL---RSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSG 1428
Query: 666 -DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQ 724
D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+YN+EAV+ LIR
Sbjct: 1429 ADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNH 1488
Query: 725 LIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIA 784
L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A VTE+D+ +T+E L+RI
Sbjct: 1489 LVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRIN 1548
Query: 785 SHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSG 843
+H R PEGL L++++R+N+ +++RA G PNF + HSG
Sbjct: 1549 AHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHGG-------PNFMM----------HSG 1588
Query: 844 ILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSD 903
I Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV QM+ GILK+D
Sbjct: 1589 ISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTD 1645
Query: 904 ELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYAKLIALLVKHSGS 949
+LITRFFR T + V +S PT R+K + LDA+ +LIALLVKHSG
Sbjct: 1646 DLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSG- 1704
Query: 950 GEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEA 1009
E N+ TKINLLNKVLGI+ GVL+ D E RQ EF QLPYHRIFIML LELN P+ VLE
Sbjct: 1705 -EATNTVTKINLLNKVLGIVVGVLLQDHEVRQGEFQQLPYHRIFIMLLLELNAPEHVLET 1763
Query: 1010 INFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVL 1067
INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP QK Y +L
Sbjct: 1764 INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLL 1821
Score = 955 (341.2 bits), Expect = 2.8e-228, Sum P(3) = 2.8e-228
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1744 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 1803
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 1804 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 1863
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 1864 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 1923
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 1924 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAH 1982
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 1983 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2013
Score = 305 (112.4 bits), Expect = 2.8e-139, Sum P(2) = 2.8e-139
Identities = 61/104 (58%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1127 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1186
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F TA+
Sbjct: 1187 ESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATAL 1230
Score = 43 (20.2 bits), Expect = 9.6e-96, Sum P(2) = 9.6e-96
Identities = 37/173 (21%), Positives = 67/173 (38%)
Query: 655 NLLDGHTHIPN-DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYN 713
+LL + N D +L+ KD+ + + L + T T C + +Y+
Sbjct: 1054 SLLKDKDRLKNLDEQLSAPKKDV--KQPEELPPITTTTASTTPATSTTCTATVPPQPQYS 1111
Query: 714 LEAVDTLIRAQLI-HL---PQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVT 769
++ L H+ P L AH A+ +Q L H +V+ +T
Sbjct: 1112 YHDINVYSLGGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMT 1171
Query: 770 ESDM-------LNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERA 815
+ L++ E +R+A+HH LTA + M+ +P+L+ A
Sbjct: 1172 TCEQIVRKDFALDSEESRMRVAAHHMM--RNLTAGMAMITCR---EPLLMSIA 1219
Score = 40 (19.1 bits), Expect = 2.0e-95, Sum P(2) = 2.0e-95
Identities = 26/114 (22%), Positives = 47/114 (41%)
Query: 632 DQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLR-------IVKAL 684
+ LQ+ +N+K ++ NL + + P P+ K+LH+ I K L
Sbjct: 622 EMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD-----KELHITACLFGGIIEKGL 676
Query: 685 QDLRAFGVQWTNKQITRCLIE--CREEYRYNLEAVDTLIRAQLIHLPQYDLALA 736
A G+ + + L + + Y + + A+D + +L PQY LA
Sbjct: 677 VTYMALGLAL--RYVLEALRKPFASKMYYFGIAALDRF-KNRLKDYPQYCQHLA 727
Score = 39 (18.8 bits), Expect = 2.8e-228, Sum P(3) = 2.8e-228
Identities = 21/95 (22%), Positives = 39/95 (41%)
Query: 491 VDEMGTIYDKLISEVEIF--LASLVTLVGVQNTLLPSSLHALIEALVALRRTR-D-AHSA 546
VDE + ++E ++F + +L+ + P L L+E + + D AH
Sbjct: 1524 VDERSVAH---VTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGG 1580
Query: 547 VALIQKLALFQAQPVLKPL-VRTAVERSIHEWISL 580
+ + QA P +R E + EW++L
Sbjct: 1581 PNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL 1615
>MGI|MGI:2442402 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005778 "peroxisomal membrane" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
MGI:MGI:2442402 GO:GO:0006355 GO:GO:0006351 GO:GO:0005778
GO:GO:0000932 CTD:23019 eggNOG:COG5103 HOVERGEN:HBG060834 KO:K12604
OMA:YLKARAP OrthoDB:EOG495ZQV ChiTaRS:CNOT1 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 EMBL:AC113951
EMBL:AC127300 EMBL:AK031357 EMBL:AK034776 EMBL:AK048177
EMBL:AK143651 EMBL:BC018281 EMBL:BC158073 EMBL:AK129258
IPI:IPI00672703 IPI:IPI00673465 IPI:IPI00880243 IPI:IPI00881912
RefSeq:NP_835179.1 UniGene:Mm.259220 ProteinModelPortal:Q6ZQ08
DIP:DIP-46845N IntAct:Q6ZQ08 STRING:Q6ZQ08 PhosphoSite:Q6ZQ08
PaxDb:Q6ZQ08 PRIDE:Q6ZQ08 Ensembl:ENSMUST00000098473 GeneID:234594
KEGG:mmu:234594 UCSC:uc009myy.1 UCSC:uc009myz.2 UCSC:uc009mzb.2
GeneTree:ENSGT00390000014869 NextBio:382234 Bgee:Q6ZQ08
CleanEx:MM_CNOT1 Genevestigator:Q6ZQ08 Uniprot:Q6ZQ08
Length = 2375
Score = 1280 (455.6 bits), Expect = 1.0e-241, Sum P(2) = 1.0e-241
Identities = 279/552 (50%), Positives = 355/552 (64%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1135 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1194
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1195 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPP 1254
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN 180
+ +++ ++ + L+ E V + +AL +L P LKD D
Sbjct: 1255 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN-------LALDINELKPGNLLKDKDR 1307
Query: 181 LKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYSYTS 240
LK + QL+ KK Q PAI T P P+P+YSY
Sbjct: 1308 LKNLDEQLSAP-KKDVKQPEELPAITTTTTSTTPATSTTCTATVP------PQPQYSYHD 1360
Query: 241 VNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAE 300
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T E
Sbjct: 1361 INVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCE 1420
Query: 301 QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT 360
QIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+ A+
Sbjct: 1421 QIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTAS 1480
Query: 361 PQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYC 420
PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RRYC
Sbjct: 1481 PQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC 1540
Query: 421 DSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLXXXXXXX 480
D VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ L
Sbjct: 1541 DPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTND------LSQPTGFL 1594
Query: 481 XXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRT 540
A+ D++ IYDK I+E+E L ++ + + +L +L+E +V R +
Sbjct: 1595 AQPMKQAW-ATDDVAQIYDKCITELEQHLHAIPPTLAMNPQA--QALRSLLEVVVLSRNS 1651
Query: 541 RDAHSAVALIQK 552
RDA +A+ L+QK
Sbjct: 1652 RDAIAALGLLQK 1663
Score = 1097 (391.2 bits), Expect = 1.0e-241, Sum P(2) = 1.0e-241
Identities = 232/430 (53%), Positives = 294/430 (68%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1665 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1722
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A +TE+D
Sbjct: 1723 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEAD 1782
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G PNF +
Sbjct: 1783 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHGG-------PNFMM- 1831
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1832 ---------HSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1879
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1880 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1939
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1940 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1997
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1998 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2057
Query: 1058 KVLSAYCSVL 1067
K Y +L
Sbjct: 2058 KGWPMYAQLL 2067
Score = 955 (341.2 bits), Expect = 7.3e-228, Sum P(3) = 7.3e-228
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1990 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 2049
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 2050 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 2109
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 2110 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 2169
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 2170 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAH 2228
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 2229 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2259
Score = 302 (111.4 bits), Expect = 6.1e-139, Sum P(3) = 6.1e-139
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1373 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1432
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1433 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1476
Score = 59 (25.8 bits), Expect = 9.8e-100, Sum P(4) = 9.8e-100
Identities = 30/125 (24%), Positives = 50/125 (40%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
D ++ + E G +A+ LL H L ++G GV + + L+ L R R P
Sbjct: 162 DADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPV 221
Query: 792 EGLTALIDMLRANHHDQPMLVERAPGAQTL-NSGLPNFSLNAATGPAVHIHS--GILQVR 848
L R D+ +L + A+T+ S L +F G I I+
Sbjct: 222 VLAPLLYPEKRDILMDR-ILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQF 280
Query: 849 GIRDL 853
G+R++
Sbjct: 281 GVREV 285
Score = 51 (23.0 bits), Expect = 6.7e-99, Sum P(4) = 6.7e-99
Identities = 39/170 (22%), Positives = 67/170 (39%)
Query: 655 NLLDGHTHIPN-DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYN 713
NLL + N D +L+ KD+ + + L + T T C + +Y+
Sbjct: 1300 NLLKDKDRLKNLDEQLSAPKKDV--KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYS 1357
Query: 714 LEAVDTLIRAQLI-HL---PQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVT 769
++ A L H+ P L AH A+ +Q L H +V+ +T
Sbjct: 1358 YHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMT 1417
Query: 770 ESDM-------LNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLV 812
+ L++ E +RIA+HH LTA + M+ +P+L+
Sbjct: 1418 TCEQIVRKDFALDSEESRMRIAAHHMM--RNLTAGMAMITCR---EPLLM 1462
Score = 40 (19.1 bits), Expect = 7.3e-228, Sum P(3) = 7.3e-228
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 491 VDEMGTIYDKLISEVEIF--LASLVTLVGVQNTLLPSSLHALIEALVALRRTR-D-AHSA 546
VDE + I+E ++F + +L+ + P L L+E + + D AH
Sbjct: 1770 VDERSVAH---ITEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGG 1826
Query: 547 VALIQKLALFQAQPVLKPL-VRTAVERSIHEWISL 580
+ + QA P +R E + EW++L
Sbjct: 1827 PNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL 1861
Score = 40 (19.1 bits), Expect = 3.6e-96, Sum P(3) = 3.6e-96
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 723 AQLIHLPQYDLALAHSMENGLNY 745
A LI P + L+++++N L+Y
Sbjct: 79 ASLITKPNFISTLSYAIDNPLHY 101
Score = 39 (18.8 bits), Expect = 3.0e-111, Sum P(3) = 3.0e-111
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 541 RDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISL 580
+D H LIQ+ A +P + A++ +H SL
Sbjct: 66 KDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSL 105
Score = 37 (18.1 bits), Expect = 6.1e-139, Sum P(3) = 6.1e-139
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 64 LGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVV 101
L L+L ++ +VD +L + Y+ QQE+ ++V
Sbjct: 3 LDSLSLALSQISYLVD----NLTKKNYRASQQEIQHIV 36
>UNIPROTKB|G3V7M0 [details] [associations]
symbol:Cnot1 "RCG39079" species:10116 "Rattus norvegicus"
[GO:0005778 "peroxisomal membrane" evidence=IEA] RGD:1308009
CTD:23019 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 GeneTree:ENSGT00390000014869
EMBL:CH474006 RefSeq:NP_001128312.1 UniGene:Rn.56498 PRIDE:G3V7M0
Ensembl:ENSRNOT00000016563 GeneID:291841 KEGG:rno:291841
NextBio:633244 Uniprot:G3V7M0
Length = 2376
Score = 1280 (455.6 bits), Expect = 2.7e-241, Sum P(2) = 2.7e-241
Identities = 279/552 (50%), Positives = 355/552 (64%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1136 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1195
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1196 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPP 1255
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN 180
+ +++ ++ + L+ E V + +AL +L P LKD D
Sbjct: 1256 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN-------LALDINELKPGNLLKDKDR 1308
Query: 181 LKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYSYTS 240
LK + QL+ KK Q PAI T P P+P+YSY
Sbjct: 1309 LKNLDEQLSAP-KKDVKQPEELPAITTTTTSTTPATSTTCTATVP------PQPQYSYHD 1361
Query: 241 VNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAE 300
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T E
Sbjct: 1362 INVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCE 1421
Query: 301 QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT 360
QIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+ A+
Sbjct: 1422 QIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTAS 1481
Query: 361 PQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYC 420
PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RRYC
Sbjct: 1482 PQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC 1541
Query: 421 DSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLXXXXXXX 480
D VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ L
Sbjct: 1542 DPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTND------LSQPTGFL 1595
Query: 481 XXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRT 540
A+ D++ IYDK I+E+E L ++ + + +L +L+E +V R +
Sbjct: 1596 AQPMKQAW-ATDDVAQIYDKCITELEQHLHAIPPTLAMNPQA--QALRSLLEVVVLSRNS 1652
Query: 541 RDAHSAVALIQK 552
RDA +A+ L+QK
Sbjct: 1653 RDAIAALGLLQK 1664
Score = 1093 (389.8 bits), Expect = 2.7e-241, Sum P(2) = 2.7e-241
Identities = 231/430 (53%), Positives = 293/430 (68%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++K LQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1666 VEGLLDATSGA--DADLLLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKY 1723
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A +TE+D
Sbjct: 1724 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEAD 1783
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G PNF +
Sbjct: 1784 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHGG-------PNFMM- 1832
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1833 ---------HSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1880
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1881 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1940
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1941 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1998
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1999 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2058
Query: 1058 KVLSAYCSVL 1067
K Y +L
Sbjct: 2059 KGWPMYAQLL 2068
Score = 955 (341.2 bits), Expect = 7.3e-228, Sum P(3) = 7.3e-228
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1991 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 2050
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 2051 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 2110
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 2111 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 2170
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 2171 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAH 2229
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 2230 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2260
Score = 302 (111.4 bits), Expect = 1.7e-138, Sum P(3) = 1.7e-138
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1374 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1433
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1434 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1477
Score = 59 (25.8 bits), Expect = 9.8e-100, Sum P(4) = 9.8e-100
Identities = 30/125 (24%), Positives = 50/125 (40%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
D ++ + E G +A+ LL H L ++G GV + + L+ L R R P
Sbjct: 162 DADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPV 221
Query: 792 EGLTALIDMLRANHHDQPMLVERAPGAQTL-NSGLPNFSLNAATGPAVHIHS--GILQVR 848
L R D+ +L + A+T+ S L +F G I I+
Sbjct: 222 VLAPLLYPEKRDILMDR-ILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQF 280
Query: 849 GIRDL 853
G+R++
Sbjct: 281 GVREV 285
Score = 51 (23.0 bits), Expect = 6.8e-99, Sum P(4) = 6.8e-99
Identities = 39/170 (22%), Positives = 67/170 (39%)
Query: 655 NLLDGHTHIPN-DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYN 713
NLL + N D +L+ KD+ + + L + T T C + +Y+
Sbjct: 1301 NLLKDKDRLKNLDEQLSAPKKDV--KQPEELPAITTTTTSTTPATSTTCTATVPPQPQYS 1358
Query: 714 LEAVDTLIRAQLI-HL---PQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVT 769
++ A L H+ P L AH A+ +Q L H +V+ +T
Sbjct: 1359 YHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMT 1418
Query: 770 ESDM-------LNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLV 812
+ L++ E +RIA+HH LTA + M+ +P+L+
Sbjct: 1419 TCEQIVRKDFALDSEESRMRIAAHHMM--RNLTAGMAMITCR---EPLLM 1463
Score = 40 (19.1 bits), Expect = 7.3e-228, Sum P(3) = 7.3e-228
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 491 VDEMGTIYDKLISEVEIF--LASLVTLVGVQNTLLPSSLHALIEALVALRRTR-D-AHSA 546
VDE + I+E ++F + +L+ + P L L+E + + D AH
Sbjct: 1771 VDERSVAH---ITEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGG 1827
Query: 547 VALIQKLALFQAQPVLKPL-VRTAVERSIHEWISL 580
+ + QA P +R E + EW++L
Sbjct: 1828 PNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL 1862
Score = 40 (19.1 bits), Expect = 3.6e-96, Sum P(3) = 3.6e-96
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 723 AQLIHLPQYDLALAHSMENGLNY 745
A LI P + L+++++N L+Y
Sbjct: 79 ASLITKPNFISTLSYAIDNPLHY 101
Score = 39 (18.8 bits), Expect = 8.1e-111, Sum P(3) = 8.1e-111
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 541 RDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISL 580
+D H LIQ+ A +P + A++ +H SL
Sbjct: 66 KDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSL 105
Score = 37 (18.1 bits), Expect = 1.7e-138, Sum P(3) = 1.7e-138
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 64 LGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVV 101
L L+L ++ +VD +L + Y+ QQE+ ++V
Sbjct: 3 LDSLSLALSQISYLVD----NLTKKNYRASQQEIQHIV 36
>UNIPROTKB|F1MHU9 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:DAAA02046541 IPI:IPI00708264
Ensembl:ENSBTAT00000027695 Uniprot:F1MHU9
Length = 2371
Score = 1275 (453.9 bits), Expect = 2.7e-241, Sum P(2) = 2.7e-241
Identities = 278/552 (50%), Positives = 354/552 (64%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1131 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1190
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1191 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPP 1250
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN 180
+ +++ ++ + L+ E V + +AL +L P LKD D
Sbjct: 1251 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN-------LALDINELKPGNLLKDKDR 1303
Query: 181 LKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYSYTS 240
LK + QL+ KK Q P I T P P+P+YSY
Sbjct: 1304 LKNLDEQLSAP-KKDVKQPEELPPITTTTTSTTPATSTTCTATVP------PQPQYSYHD 1356
Query: 241 VNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAE 300
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T E
Sbjct: 1357 INVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCE 1416
Query: 301 QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT 360
QIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+ A+
Sbjct: 1417 QIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTAS 1476
Query: 361 PQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYC 420
PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RRYC
Sbjct: 1477 PQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC 1536
Query: 421 DSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLXXXXXXX 480
D VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ L
Sbjct: 1537 DPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTND------LSQPTGFL 1590
Query: 481 XXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRT 540
A+ D++ IYDK I+E+E L ++ + + +L +L+E +V R +
Sbjct: 1591 AQPMKQAW-ATDDVAQIYDKCITELEQHLHAIPPTLAMNPQA--QALRSLLEVVVLSRNS 1647
Query: 541 RDAHSAVALIQK 552
RDA +A+ L+QK
Sbjct: 1648 RDAIAALGLLQK 1659
Score = 1098 (391.6 bits), Expect = 2.7e-241, Sum P(2) = 2.7e-241
Identities = 233/430 (54%), Positives = 294/430 (68%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1661 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1718
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A VTE+D
Sbjct: 1719 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEAD 1778
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G PNF +
Sbjct: 1779 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHGG-------PNFMM- 1827
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1828 ---------HSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1875
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1876 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1935
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1936 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1993
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1994 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2053
Query: 1058 KVLSAYCSVL 1067
K Y +L
Sbjct: 2054 KGWPMYAQLL 2063
Score = 955 (341.2 bits), Expect = 3.2e-227, Sum P(3) = 3.2e-227
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1986 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 2045
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 2046 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 2105
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 2106 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 2165
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 2166 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAH 2224
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 2225 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2255
Score = 302 (111.4 bits), Expect = 1.4e-140, Sum P(4) = 1.4e-140
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1369 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1428
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1429 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1472
Score = 59 (25.8 bits), Expect = 9.6e-100, Sum P(4) = 9.6e-100
Identities = 30/125 (24%), Positives = 50/125 (40%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
D ++ + E G +A+ LL H L ++G GV + + L+ L R R P
Sbjct: 162 DADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPV 221
Query: 792 EGLTALIDMLRANHHDQPMLVERAPGAQTL-NSGLPNFSLNAATGPAVHIHS--GILQVR 848
L R D+ +L + A+T+ S L +F G I I+
Sbjct: 222 VLAPLLYPEKRDILMDR-ILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQF 280
Query: 849 GIRDL 853
G+R++
Sbjct: 281 GVREV 285
Score = 52 (23.4 bits), Expect = 5.2e-99, Sum P(4) = 5.2e-99
Identities = 39/170 (22%), Positives = 67/170 (39%)
Query: 655 NLLDGHTHIPN-DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYN 713
NLL + N D +L+ KD+ + + L + T T C + +Y+
Sbjct: 1296 NLLKDKDRLKNLDEQLSAPKKDV--KQPEELPPITTTTTSTTPATSTTCTATVPPQPQYS 1353
Query: 714 LEAVDTLIRAQLI-HL---PQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVT 769
++ A L H+ P L AH A+ +Q L H +V+ +T
Sbjct: 1354 YHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMT 1413
Query: 770 ESDM-------LNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLV 812
+ L++ E +RIA+HH LTA + M+ +P+L+
Sbjct: 1414 TCEQIVRKDFALDSEESRMRIAAHHMM--RNLTAGMAMITCR---EPLLM 1458
Score = 40 (19.1 bits), Expect = 3.6e-96, Sum P(3) = 3.6e-96
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 723 AQLIHLPQYDLALAHSMENGLNY 745
A LI P + L+++++N L+Y
Sbjct: 79 ASLITKPNFISTLSYAIDNPLHY 101
Score = 39 (18.8 bits), Expect = 3.2e-227, Sum P(3) = 3.2e-227
Identities = 21/95 (22%), Positives = 39/95 (41%)
Query: 491 VDEMGTIYDKLISEVEIF--LASLVTLVGVQNTLLPSSLHALIEALVALRRTR-D-AHSA 546
VDE + ++E ++F + +L+ + P L L+E + + D AH
Sbjct: 1766 VDERSVAH---VTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGG 1822
Query: 547 VALIQKLALFQAQPVLKPL-VRTAVERSIHEWISL 580
+ + QA P +R E + EW++L
Sbjct: 1823 PNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL 1857
Score = 39 (18.8 bits), Expect = 1.4e-140, Sum P(4) = 1.4e-140
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 387 QKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQ 446
Q+T + + P+ ++H + E + ++ QR Y T + + E ++ +
Sbjct: 820 QQTDLSQVWPEANQHFSKEIDDEANSYF-QRIYNHPPHPTMSVDEVLEMLQRFKDSTIKR 878
Query: 447 QMAVYEEFARNI 458
+ V+ RN+
Sbjct: 879 EREVFNCMLRNL 890
Score = 39 (18.8 bits), Expect = 2.3e-111, Sum P(3) = 2.3e-111
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 541 RDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISL 580
+D H LIQ+ A +P + A++ +H SL
Sbjct: 66 KDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSL 105
Score = 37 (18.1 bits), Expect = 1.4e-140, Sum P(4) = 1.4e-140
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 64 LGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVV 101
L L+L ++ +VD +L + Y+ QQE+ ++V
Sbjct: 3 LDSLSLALSQISYLVD----NLTKKNYRASQQEIQHIV 36
>UNIPROTKB|A5YKK6 [details] [associations]
symbol:CNOT1 "CCR4-NOT transcription complex subunit 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS;IDA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IDA] [GO:2000036 "regulation of
stem cell maintenance" evidence=IMP] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=IDA] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0042974 "retinoic acid receptor binding" evidence=IDA]
[GO:0048387 "negative regulation of retinoic acid receptor
signaling pathway" evidence=IDA] [GO:0030331 "estrogen receptor
binding" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005778 "peroxisomal
membrane" evidence=IDA] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 GO:GO:0005829 GO:GO:0006355 GO:GO:0006351
GO:GO:0005778 GO:GO:0000932 GO:GO:0000289 EMBL:AL117492
EMBL:BX537840 EMBL:CR749237 EMBL:EF553522 EMBL:AC009118
EMBL:AC010287 EMBL:BC000779 EMBL:BC024317 EMBL:BC040523
EMBL:AB023224 EMBL:AF110778 IPI:IPI00166010 IPI:IPI00410157
IPI:IPI00642900 IPI:IPI00880052 PIR:T17270 RefSeq:NP_001252541.1
RefSeq:NP_057368.3 RefSeq:NP_996882.1 UniGene:Hs.460923
UniGene:Hs.731691 PDB:4GMJ PDB:4GML PDBsum:4GMJ PDBsum:4GML
ProteinModelPortal:A5YKK6 DIP:DIP-44954N IntAct:A5YKK6
MINT:MINT-2835018 STRING:A5YKK6 PhosphoSite:A5YKK6 PaxDb:A5YKK6
PeptideAtlas:A5YKK6 PRIDE:A5YKK6 Ensembl:ENST00000317147
Ensembl:ENST00000441024 Ensembl:ENST00000567188
Ensembl:ENST00000569240 GeneID:23019 KEGG:hsa:23019 UCSC:uc002enu.4
UCSC:uc002env.3 UCSC:uc002enx.3 CTD:23019 GeneCards:GC16M058553
H-InvDB:HIX0013093 HGNC:HGNC:7877 MIM:604917 neXtProt:NX_A5YKK6
PharmGKB:PA26672 eggNOG:COG5103 HOVERGEN:HBG060834
InParanoid:A5YKK6 KO:K12604 OMA:YLKARAP OrthoDB:EOG495ZQV
PhylomeDB:A5YKK6 ChiTaRS:CNOT1 GenomeRNAi:23019 NextBio:43960
ArrayExpress:A5YKK6 Bgee:A5YKK6 Genevestigator:A5YKK6
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
Uniprot:A5YKK6
Length = 2376
Score = 1274 (453.5 bits), Expect = 3.5e-241, Sum P(2) = 3.5e-241
Identities = 278/552 (50%), Positives = 354/552 (64%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1136 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1195
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1196 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPP 1255
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN 180
+ +++ ++ + L+ E V + +AL +L P LKD D
Sbjct: 1256 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN-------LALDINELKPGNLLKDKDR 1308
Query: 181 LKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYSYTS 240
LK + QL+ KK Q P I T P P+P+YSY
Sbjct: 1309 LKNLDEQLSAP-KKDVKQPEELPPITTTTTSTTPATNTTCTATVP------PQPQYSYHD 1361
Query: 241 VNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAE 300
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T E
Sbjct: 1362 INVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCE 1421
Query: 301 QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT 360
QIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+ A+
Sbjct: 1422 QIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTAS 1481
Query: 361 PQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYC 420
PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RRYC
Sbjct: 1482 PQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC 1541
Query: 421 DSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLXXXXXXX 480
D VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ L
Sbjct: 1542 DPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTND------LSQPTGFL 1595
Query: 481 XXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRT 540
A+ D++ IYDK I+E+E L ++ + + +L +L+E +V R +
Sbjct: 1596 AQPMKQAW-ATDDVAQIYDKCITELEQHLHAIPPTLAMNPQA--QALRSLLEVVVLSRNS 1652
Query: 541 RDAHSAVALIQK 552
RDA +A+ L+QK
Sbjct: 1653 RDAIAALGLLQK 1664
Score = 1098 (391.6 bits), Expect = 3.5e-241, Sum P(2) = 3.5e-241
Identities = 233/430 (54%), Positives = 294/430 (68%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1666 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1723
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A VTE+D
Sbjct: 1724 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEAD 1783
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G PNF +
Sbjct: 1784 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHGG-------PNFMM- 1832
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1833 ---------HSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1880
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1881 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1940
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1941 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1998
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1999 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2058
Query: 1058 KVLSAYCSVL 1067
K Y +L
Sbjct: 2059 KGWPMYAQLL 2068
Score = 955 (341.2 bits), Expect = 4.2e-227, Sum P(3) = 4.2e-227
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1991 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 2050
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 2051 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 2110
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 2111 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 2170
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 2171 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAH 2229
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 2230 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2260
Score = 302 (111.4 bits), Expect = 4.8e-139, Sum P(3) = 4.8e-139
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1374 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1433
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1434 ESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1477
Score = 57 (25.1 bits), Expect = 3.7e-100, Sum P(4) = 3.7e-100
Identities = 30/125 (24%), Positives = 50/125 (40%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
D ++ + E G +A+ LL H L ++G GV + + L+ L R R P
Sbjct: 162 DADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPV 221
Query: 792 EGLTALIDMLRANHHDQPMLVERAPGAQTL-NSGLPNFSLNAATGPAVHIHS--GILQVR 848
L R D+ +L + A+T+ S L +F G I I+
Sbjct: 222 VLAPLLYPEKRDILMDR-ILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIVQF 280
Query: 849 GIRDL 853
G+R++
Sbjct: 281 GVREV 285
Score = 51 (23.0 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
Identities = 39/170 (22%), Positives = 67/170 (39%)
Query: 655 NLLDGHTHIPN-DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYN 713
NLL + N D +L+ KD+ + + L + T T C + +Y+
Sbjct: 1301 NLLKDKDRLKNLDEQLSAPKKDV--KQPEELPPITTTTTSTTPATNTTCTATVPPQPQYS 1358
Query: 714 LEAVDTLIRAQLI-HL---PQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVT 769
++ A L H+ P L AH A+ +Q L H +V+ +T
Sbjct: 1359 YHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMT 1418
Query: 770 ESDM-------LNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLV 812
+ L++ E +RIA+HH LTA + M+ +P+L+
Sbjct: 1419 TCEQIVRKDFALDSEESRMRIAAHHMM--RNLTAGMAMITCR---EPLLM 1463
Score = 45 (20.9 bits), Expect = 5.5e-112, Sum P(3) = 5.5e-112
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 541 RDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISL 580
+D H LIQ+ AL +P + A++ +H SL
Sbjct: 66 KDFHQTQFLIQECALLITKPNFISTLSYAIDNPLHYQKSL 105
Score = 39 (18.8 bits), Expect = 4.2e-227, Sum P(3) = 4.2e-227
Identities = 21/95 (22%), Positives = 39/95 (41%)
Query: 491 VDEMGTIYDKLISEVEIF--LASLVTLVGVQNTLLPSSLHALIEALVALRRTR-D-AHSA 546
VDE + ++E ++F + +L+ + P L L+E + + D AH
Sbjct: 1771 VDERSVAH---VTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGG 1827
Query: 547 VALIQKLALFQAQPVLKPL-VRTAVERSIHEWISL 580
+ + QA P +R E + EW++L
Sbjct: 1828 PNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL 1862
Score = 38 (18.4 bits), Expect = 5.9e-96, Sum P(3) = 5.9e-96
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 723 AQLIHLPQYDLALAHSMENGLNY 745
A LI P + L+++++N L+Y
Sbjct: 79 ALLITKPNFISTLSYAIDNPLHY 101
Score = 37 (18.1 bits), Expect = 4.8e-139, Sum P(3) = 4.8e-139
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 64 LGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVV 101
L L+L ++ +VD +L + Y+ QQE+ ++V
Sbjct: 3 LDSLSLALSQISYLVD----NLTKKNYRASQQEIQHIV 36
>UNIPROTKB|F1RFU3 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 CTD:23019 KO:K12604 OMA:YLKARAP
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:FP236140 RefSeq:XP_003127000.1
Ensembl:ENSSSCT00000003099 GeneID:100511993 KEGG:ssc:100511993
Uniprot:F1RFU3
Length = 2375
Score = 1270 (452.1 bits), Expect = 3.2e-240, Sum P(2) = 3.2e-240
Identities = 278/552 (50%), Positives = 354/552 (64%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1136 MKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1195
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DLD+KSL+ EAY KGQQELLYVVPFVAKV+ES RS +
Sbjct: 1196 GHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPP 1255
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDN 180
+ +++ ++ + L+ E V + +AL +L P LKD D
Sbjct: 1256 NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN-------LALDINELKPGNLLKDKDR 1308
Query: 181 LKFSELQLAVTHKKPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYSYTS 240
LK + QL+ KK Q P I T P P+P+YSY
Sbjct: 1309 LKNLDEQLSAP-KKDVKQPEELPPITTTTTSTTPATSTTCTATVP------PQPQYSYHD 1361
Query: 241 VNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAE 300
+NV ++ +APHI +N + LFQA P LK VR A+ER++ E + VV+R++KIA+ T E
Sbjct: 1362 INVYSLACLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCE 1421
Query: 301 QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT 360
QIV+KDFALD +E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+ A+
Sbjct: 1422 QIVRKDFALDSEESRMRMAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTAS 1481
Query: 361 PQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYC 420
PQQ+E+MDQ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E RRYC
Sbjct: 1482 PQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC 1541
Query: 421 DSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAALFLXXXXXXX 480
D VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ L
Sbjct: 1542 DPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTND------LSQPTGFL 1595
Query: 481 XXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVALRRT 540
A+ D++ IYDK I+E+E L ++ + + +L +L+E +V R +
Sbjct: 1596 AQPMKHAW--ADDVAQIYDKCITELEQHLHAIPPTLAMNPQA--QALRSLLEVVVLSRNS 1651
Query: 541 RDAHSAVALIQK 552
RDA +A+ L+QK
Sbjct: 1652 RDAIAALGLLQK 1663
Score = 1093 (389.8 bits), Expect = 3.2e-240, Sum P(2) = 3.2e-240
Identities = 232/430 (53%), Positives = 293/430 (68%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + D +L LRY++ HL ++KALQD RA+G W NKQITRCLIECR+EY+Y
Sbjct: 1665 VEGLLDATSGA--DADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKY 1722
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER A TE+D
Sbjct: 1723 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHFTEAD 1782
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+RI +H R PEGL L++++R+N+ +++RA G PNF +
Sbjct: 1783 LFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYE---AMIDRAHGG-------PNFMM- 1831
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1832 ---------HSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1879
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS--------------PTPTRSKMFQTLDAYA 937
QM+ GILK+D+LITRFFR T + V +S PT R+K + LDA+
Sbjct: 1880 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFV 1939
Query: 938 KLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLF 997
+LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + RQ EF QLPYHRIFIML
Sbjct: 1940 RLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLL 1997
Query: 998 LELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQ 1057
LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP Q
Sbjct: 1998 LELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQ 2057
Query: 1058 KVLSAYCSVL 1067
K Y +L
Sbjct: 2058 KGWPMYAQLL 2067
Score = 955 (341.2 bits), Expect = 1.3e-225, Sum P(2) = 1.3e-225
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1990 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 2049
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 2050 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 2109
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 2110 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 2169
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 2170 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAH 2228
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 2229 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2259
Score = 303 (111.7 bits), Expect = 1.3e-138, Sum P(3) = 1.3e-138
Identities = 60/104 (57%), Positives = 77/104 (74%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
+ L + LFQA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +
Sbjct: 1374 ITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSE 1433
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E RMR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F +A+
Sbjct: 1434 ESRMRMAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL 1477
Score = 59 (25.8 bits), Expect = 9.8e-100, Sum P(4) = 9.8e-100
Identities = 30/125 (24%), Positives = 50/125 (40%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
D ++ + E G +A+ LL H L ++G GV + + L+ L R R P
Sbjct: 162 DADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPV 221
Query: 792 EGLTALIDMLRANHHDQPMLVERAPGAQTL-NSGLPNFSLNAATGPAVHIHS--GILQVR 848
L R D+ +L + A+T+ S L +F G I I+
Sbjct: 222 VLAPLLYPEKRDILMDR-ILPDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQF 280
Query: 849 GIRDL 853
G+R++
Sbjct: 281 GVREV 285
Score = 41 (19.5 bits), Expect = 2.6e-95, Sum P(2) = 2.6e-95
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 29 MVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
M + + +K+LL ++ +A+F++ L +
Sbjct: 1756 MAVAFAMQLVKILLVDERSVAHFTEADLFHTI 1787
Score = 40 (19.1 bits), Expect = 3.6e-96, Sum P(3) = 3.6e-96
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 723 AQLIHLPQYDLALAHSMENGLNY 745
A LI P + L+++++N L+Y
Sbjct: 79 ASLITKPNFISTLSYAIDNPLHY 101
Score = 39 (18.8 bits), Expect = 8.0e-111, Sum P(3) = 8.0e-111
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 541 RDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISL 580
+D H LIQ+ A +P + A++ +H SL
Sbjct: 66 KDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSL 105
Score = 37 (18.1 bits), Expect = 1.3e-138, Sum P(3) = 1.3e-138
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 64 LGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVV 101
L L+L ++ +VD +L + Y+ QQE+ ++V
Sbjct: 3 LDSLSLALSQISYLVD----NLTKKNYRASQQEIQHIV 36
>ZFIN|ZDB-GENE-040915-1 [details] [associations]
symbol:cnot1 "CCR4-NOT transcription complex, subunit
1" species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] ZFIN:ZDB-GENE-040915-1
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:CU468035 IPI:IPI00829204
Ensembl:ENSDART00000017536 ArrayExpress:F1QAM0 Bgee:F1QAM0
Uniprot:F1QAM0
Length = 2375
Score = 1262 (449.3 bits), Expect = 4.2e-240, Sum P(2) = 4.2e-240
Identities = 279/556 (50%), Positives = 355/556 (63%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
MKR SIE NFH LYSNFLD +K P+ MV+ ETYRNIKVLL SDK ANFSDR+LLKNL
Sbjct: 1128 MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL 1187
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
GHWLGM+TL +N+PIL DL+LKSL+ EAY KGQQELLYVVPFVAKV+ES RS
Sbjct: 1188 GHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV----- 1242
Query: 121 EIFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSA-VALIQKDLVPSYYLKDPD 179
IF +G+ N L + LH + + L+ + +++ DL P L+D D
Sbjct: 1243 -IFRPQNPWTMGIMNVL--AELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKD 1299
Query: 180 NLKFSELQLAVTHK--KPPPQALTQPAINXXXXXXXXXXXXXXXXTPPLTMQQPPEPRYS 237
LK E QL+ K KPP + L P + T T PP P++S
Sbjct: 1300 KLKTLEEQLSAPKKETKPPEELL--PIVTTADSVPFTAAPSTPATTTACTATGPPTPQFS 1357
Query: 238 YTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVN 297
Y +NV + +APHI IN + L QA P LK VR A+ER++ E + VV+R++KIA+
Sbjct: 1358 YHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMT 1417
Query: 298 TAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAIT 357
T EQIV+KDFALD +E MR AAHH+ RNLTAGMAMITCR+ L SI NLK+ F A+
Sbjct: 1418 TCEQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALR 1477
Query: 358 NATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQR 417
TPQQ+E+M++ A DN ELAC FIQKTA+EKA P++DK LA E+E RKHAR E R
Sbjct: 1478 APTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGR 1537
Query: 418 RYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAAL-FLXXX 476
RYCD VLTYQAERMPEQIRLKVGGV P+Q+AVYEEFARN+PGF P ++ FL
Sbjct: 1538 RYCDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQP 1597
Query: 477 XXXXXXXXVSAFNGVDEMGTIYDKLISEVEIFLASLVTLVGVQNTLLPSSLHALIEALVA 536
A+ D++ IY+K IS++E L ++ + + ++ +L+EA+V
Sbjct: 1598 MKQ------QAWP-TDDVAHIYEKCISDLEQHLHAIPPALAMNPQT--QAIRSLLEAVVM 1648
Query: 537 LRRTRDAHSAVALIQK 552
R +RD +A+ L+QK
Sbjct: 1649 ARNSRDGIAALGLLQK 1664
Score = 1100 (392.3 bits), Expect = 4.2e-240, Sum P(2) = 4.2e-240
Identities = 233/429 (54%), Positives = 295/429 (68%)
Query: 653 IENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRY 712
+E LLD + DPEL L Y++ HL ++KALQD RA+G QW NKQITRCLIECR+EY+Y
Sbjct: 1666 VEGLLDATSGA--DPELLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKY 1723
Query: 713 NLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESD 772
N+EAV+ LIR L+++ QYDL LA SMENGLNY+AVAF MQL++ LV+ER + +TE+D
Sbjct: 1724 NVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEAD 1783
Query: 773 MLNTLEVLIRIASHHR-QPPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLN 831
+ +T+E L+R ++H R PEGL L+D++R+N+ +++R G PNF +
Sbjct: 1784 LFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYE---AMIDRHHGG-------PNFMM- 1832
Query: 832 AATGPAVHIHSGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFV 891
HSGI Q + DDPPGL EK EYLLREWV +YHS A +D KAF+ FV
Sbjct: 1833 ---------HSGISQAS---EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFV 1880
Query: 892 HQMNCHGILKSDELITRFFRFATSLVVGVS---------PTPT----RSKMFQTLDAYAK 938
QM+ GILK+D+LITRFFR T + V +S PT + R+K + LDA+ +
Sbjct: 1881 GQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVR 1940
Query: 939 LIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFL 998
LIALLVKHSG E N+ TKINLLNKVLGI+ GVLI D + RQ EF QLPYHRIFIML L
Sbjct: 1941 LIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLL 1998
Query: 999 ELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQK 1058
ELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+++HR FI RML TP QK
Sbjct: 1999 ELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQK 2058
Query: 1059 VLSAYCSVL 1067
Y +L
Sbjct: 2059 GWPMYAQLL 2067
Score = 960 (343.0 bits), Expect = 2.7e-225, Sum P(2) = 2.7e-225
Identities = 183/271 (67%), Positives = 216/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 1990 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 2049
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 2050 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFL 2109
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 2110 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 2169
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P+ FKKDLD+YLKTRSPVTFL+E+R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 2170 -VMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAH 2228
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 2229 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 2259
Score = 287 (106.1 bits), Expect = 3.3e-139, Sum P(4) = 3.3e-139
Identities = 57/98 (58%), Positives = 72/98 (73%)
Query: 553 LALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRS 612
+ L QA P LK VR A+ER++ E + VV+R++KIA+ T EQIV+KDFALD +E MR
Sbjct: 1379 IPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRV 1438
Query: 613 AAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
AAHH+ RNLTAGMAMITCR+ L SI NLK+ F A+
Sbjct: 1439 AAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAAL 1476
Score = 70 (29.7 bits), Expect = 2.6e-101, Sum P(4) = 2.6e-101
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
D L + E G +A+ LL H L ++G++GV + + L+ L R R P
Sbjct: 162 DADLGGNQEGGFQDIAIEVLHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCP- 220
Query: 792 EGLTALIDMLRANHHDQPMLVERA-PGAQTLNSGLPNFSL 830
L +L + D +L++R P + LN + SL
Sbjct: 221 ---VVLAPLLYPDKRD--ILMDRILPDSGDLNKTMMESSL 255
Score = 50 (22.7 bits), Expect = 2.5e-99, Sum P(4) = 2.5e-99
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPP 791
+L H ++ L + C L + G + + D L TLE + +PP
Sbjct: 1260 ELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNL-LRDKDKLKTLEEQLSAPKKETKPP 1318
Query: 792 EGLTALI 798
E L ++
Sbjct: 1319 EELLPIV 1325
Score = 39 (18.8 bits), Expect = 3.3e-139, Sum P(4) = 3.3e-139
Identities = 15/73 (20%), Positives = 33/73 (45%)
Query: 387 QKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMPEQI-RLKVGGVTP 445
Q+T + + P+ ++H + E + ++ QR Y T + + E + R K +
Sbjct: 817 QQTDLSQVWPEANQHFSKEIDDEANSYF-QRIYNHPPHPTMSVDEVLEMLQRFKDSNIK- 874
Query: 446 QQMAVYEEFARNI 458
++ V+ RN+
Sbjct: 875 REREVFNCMLRNL 887
Score = 39 (18.8 bits), Expect = 2.5e-99, Sum P(4) = 2.5e-99
Identities = 28/121 (23%), Positives = 52/121 (42%)
Query: 632 DQLQQSIKANLKHLFTTAITVIENLLDGHTHIPNDPELTLRYKDLHLR-------IVKAL 684
+ LQ+ +N+K ++ NL + + P P+ K+LH+ I K L
Sbjct: 863 EMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD-----KELHITACLFGGIIEKGL 917
Query: 685 QDLRAFGVQWTNKQITRCLIEC--REEYRYNLEAVDTLIRAQLIHLPQY--DLA-LAHSM 739
A G+ + + L + + Y + + A+D + +L PQY LA +AH +
Sbjct: 918 VTYMALGLAL--RYVLEALRKPFGSKMYYFGIAALDRF-KNRLKDYPQYCQHLASIAHFL 974
Query: 740 E 740
+
Sbjct: 975 Q 975
Score = 39 (18.8 bits), Expect = 3.5e-98, Sum P(4) = 3.5e-98
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 774 LNTLEVLIRIASHHRQPPEGLTALIDMLRANHHDQPMLVERA 815
L++ E +R+A+HH LTA + M+ +P+L+ A
Sbjct: 1429 LDSEESHMRVAAHHMM--RNLTAGMAMITCR---EPLLMSIA 1465
Score = 38 (18.4 bits), Expect = 2.6e-101, Sum P(4) = 2.6e-101
Identities = 14/73 (19%), Positives = 33/73 (45%)
Query: 959 INLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAY 1018
+ L + I G L +++ Q + QLP + ML + V + ++ +L+
Sbjct: 617 VTFLKRRCPSIMGGLAPEKD--QPKSAQLPPETLATMLACLQSCAGSVSQELSETILTMV 674
Query: 1019 CSVLHILRPSKQP 1031
+ +++ ++QP
Sbjct: 675 ANCSNVMNKARQP 687
Score = 37 (18.1 bits), Expect = 3.3e-139, Sum P(4) = 3.3e-139
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 64 LGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVV 101
L L+L ++ +VD +L + Y+ QQE+ ++V
Sbjct: 3 LDSLSLALSQISYLVD----NLTKKNYRASQQEIQHIV 36
>WB|WBGene00002845 [details] [associations]
symbol:let-711 species:6239 "Caenorhabditis elegans"
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0010467 "gene
expression" evidence=IMP] [GO:0040001 "establishment of mitotic
spindle localization" evidence=IMP] [GO:0030953 "astral microtubule
organization" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0017148 "negative regulation
of translation" evidence=IMP] GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0010467
GO:GO:0002119 GO:GO:0017148 GO:GO:0018996 GO:GO:0040011
GO:GO:0000003 GO:GO:0000956 GO:GO:0030953 EMBL:FO081266
GO:GO:0040001 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 STRING:Q20937 PaxDb:Q20937
EnsemblMetazoa:F57B9.2 KEGG:cel:CELE_F57B9.2 UCSC:F57B9.2
CTD:175971 WormBase:F57B9.2 HOGENOM:HOG000020862 InParanoid:Q20937
OMA:HMDHEVR NextBio:890552 Uniprot:Q20937
Length = 2641
Score = 605 (218.0 bits), Expect = 1.7e-174, Sum P(4) = 1.7e-174
Identities = 125/256 (48%), Positives = 166/256 (64%)
Query: 1059 VLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVIT------PHQKGWPLYAQLL 1112
+L A+ L+P + PGFA+AWL+IV HR IGR+L T K Y QL+
Sbjct: 2254 ILEAFGQTFFALQPRRMPGFAFAWLDIVGHRNVIGRLLANTGIAETVDAVKTAATYTQLI 2313
Query: 1113 IDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQM 1172
I KFLAPFLRN++L K YKG LRVLLV+LHDFPE LC++HY CD IP NC+Q+
Sbjct: 2314 ISHLKFLAPFLRNIQLPKSIAILYKGTLRVLLVILHDFPELLCEFHYVICDTIPPNCVQL 2373
Query: 1173 RNLILSAFPGNMRLPDPFTPNLK-VDTLADINQAPRMHADFASLIQPATFKKDLDAYLKT 1231
RNLILSA+P MRLPDPF N K VDT+ ++ P+ + + A++I P + LD YL
Sbjct: 2374 RNLILSAYPRQMRLPDPFALNFKQVDTIPEMAVEPKSNLNMATII-PDNIRIPLDEYLAN 2432
Query: 1232 RSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAI--LSIRAKSLSPNNKTIAH 1289
R V FL + +Q ++ G++YNT +MNA+VLYVG +AI L +R + +S N IAH
Sbjct: 2433 RISVDFLPNLPTLLQTQNQAGTKYNTTVMNALVLYVGIRAIEHLHLRRQRISTLN--IAH 2490
Query: 1290 SAHMDIFLNFAVDLDT 1305
+++MDIF N A+ LDT
Sbjct: 2491 TSYMDIFQNLAIQLDT 2506
Score = 508 (183.9 bits), Expect = 1.7e-174, Sum P(4) = 1.7e-174
Identities = 147/469 (31%), Positives = 235/469 (50%)
Query: 613 AAHHIARNLTAGMAMITCRDQLQQSIKA-NLKHLFTTAITVIENLLDGH----THIPN-- 665
A H++ + A + R+ +Q I + HL E+LL + T N
Sbjct: 1850 AQPHLSNS--AFQTVCLMRELMQNVISTKDANHLMILVTRSTEHLLHAYRLEGTPPKNLL 1907
Query: 666 DPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQL 725
D E R +DL + +++ LQ+ F + +++IT +++ R +Y++N+E ++ L + L
Sbjct: 1908 DVEWARRLRDLFIGLMRLLQNY--FPLVELSRRITTAIMQIRSDYKWNMEGIEILFKQNL 1965
Query: 726 IHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIAS 785
+ +D LA SM+NG N AV F + ++ + + T E L ++
Sbjct: 1966 LQSVLWDQHLAGSMDNGGNMEAVLFAQKFVRSIGGGDMSRIQFLKERFPLTCEQLTKL-- 2023
Query: 786 HHRQPP---EGLTALIDMLRANH-HDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIH 841
H Q EG+ ++ N H L ++ P A LP + AA P
Sbjct: 2024 HQLQSATRTEGMNNAMNNGAGNAAHHHAGLQQQPPVA------LP---MEAA--PMPQAS 2072
Query: 842 SGILQVRGIRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILK 901
+ + RG D + + K E ++REW+ + +SP G + P ++ + M+ HG+L
Sbjct: 2073 ADAMAQRGYDDQE----MTAKVEIIMREWIGLCYSPTGQRSPQESLAQMIQLMHEHGVLA 2128
Query: 902 SDELITRFFRFATSLVVGVS-------------PTPT-RSKMFQTLDAYAKLIALLVKHS 947
+D+ IT+FFR V +S PT R + + TLDA+ KL+AL+++HS
Sbjct: 2129 TDDKITQFFRLCVENCVDISVRVMKSEQLANGLPTTLIRHRCYYTLDAFVKLMALMIRHS 2188
Query: 948 GSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPV- 1006
+G+ N KINLL K+L II GVL D E R+ +F+ +PYHRI I LF E+ PDP+
Sbjct: 2189 DNGQSQN---KINLLKKLLNIIVGVLHMDHEVRKQDFNAMPYHRILISLFNEITGPDPLK 2245
Query: 1007 -LEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVIT 1054
LE I + +L A+ L+P + PGFA+AWL+IV HR IGR+L T
Sbjct: 2246 LLEPIAWSILEAFGQTFFALQPRRMPGFAFAWLDIVGHRNVIGRLLANT 2294
Score = 445 (161.7 bits), Expect = 1.7e-174, Sum P(4) = 1.7e-174
Identities = 96/240 (40%), Positives = 141/240 (58%)
Query: 231 PPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVER 290
P ++Y +NV + PH+ I S L LFQ P K LVR A+ +I E I V ER
Sbjct: 1571 PNVTHFAYHDINVLTYDGLIPHVKIVSHLPLFQLHPHAKHLVRPAMIHAIKELIGPVTER 1630
Query: 291 AVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKH 350
A+KIA+ E +V+KDFALDP+E +R+A+ H+ R +TAGMAMITCRD L S+ +NL +
Sbjct: 1631 ALKIAMTVTESLVRKDFALDPEEQNLRAASFHMMRAMTAGMAMITCRDPLASSMHSNLAN 1690
Query: 351 LFTTAI--TNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYER 408
F++++ T A P+ K++++ DN+EL+ FI KTA EKA DI+K L +Y++
Sbjct: 1691 AFSSSLRSTAANPEMKQMIEDAAATITQDNVELSTNFIVKTACEKATQDIEKRLEADYQK 1750
Query: 409 RKHARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERD 468
R A++E Y D A+ +P+ I G M +Y++F+ I GF+ S D
Sbjct: 1751 RIAAKAEMSFYRDEIAAAIHAQ-LPKAIATVPGPTDKALMGIYDQFSSRICGFKANSGED 1809
Score = 353 (129.3 bits), Expect = 1.7e-174, Sum P(4) = 1.7e-174
Identities = 68/134 (50%), Positives = 100/134 (74%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGI---ANFSDRTLL 57
MKR SIE NF LY+ F++ I+ P + + +ET+RNI++LLR+DK +N+SDR LL
Sbjct: 1319 MKRVSIEQNFQPLYNQFVNAIENPYLDQCIKRETFRNIRILLRTDKRTTVASNYSDRQLL 1378
Query: 58 KNLGHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLI 117
KNLG WLG +T+ RN+PIL+ DLDLKSL+ EAY KGQ ELLYVVPF++K++ +CS++ L
Sbjct: 1379 KNLGSWLGAITIARNKPILLNDLDLKSLLLEAYYKGQAELLYVVPFISKILTACSKTSLF 1438
Query: 118 SEVEIFLASLVTLV 131
+ ++ S++ ++
Sbjct: 1439 TPTCAWIRSILKVL 1452
Score = 251 (93.4 bits), Expect = 8.4e-153, Sum P(5) = 8.4e-153
Identities = 51/104 (49%), Positives = 72/104 (69%)
Query: 547 VALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPD 606
V ++ L LFQ P K LVR A+ +I E I V ERA+KIA+ E +V+KDFALDP+
Sbjct: 1593 VKIVSHLPLFQLHPHAKHLVRPAMIHAIKELIGPVTERALKIAMTVTESLVRKDFALDPE 1652
Query: 607 EGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 650
E +R+A+ H+ R +TAGMAMITCRD L S+ +NL + F++++
Sbjct: 1653 EQNLRAASFHMMRAMTAGMAMITCRDPLASSMHSNLANAFSSSL 1696
Score = 48 (22.0 bits), Expect = 1.6e-131, Sum P(5) = 1.6e-131
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 529 ALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKI 588
A+I L + ++ A A L A P +K ++ A + + L VK
Sbjct: 1672 AMITCRDPLASSMHSNLANAFSSSLRSTAANPEMKQMIEDAAATITQDNVELSTNFIVKT 1731
Query: 589 AVNTAEQIVKKDFALD 604
A A Q ++K D
Sbjct: 1732 ACEKATQDIEKRLEAD 1747
Score = 44 (20.5 bits), Expect = 1.9e-48, Sum P(6) = 1.9e-48
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 802 RANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGIRDLDDPPGLFE 861
+A H Q M+ + P +Q G+ N +N + + + + +L+V ++ PP
Sbjct: 867 QAQHQHQHMMGQPPPSSQNAQPGM-NLLMNMSPFASGN-NRDLLKV--VQPAPPPPSSMS 922
Query: 862 KTEYLLREWV 871
+ ++R +
Sbjct: 923 PSTQMMRSLI 932
Score = 40 (19.1 bits), Expect = 1.2e-82, Sum P(4) = 1.2e-82
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 796 ALIDMLRANHHDQPMLVERAPGAQTLNSGLPN-FS 829
A M+RA M+ R P A +++S L N FS
Sbjct: 1659 ASFHMMRAMTAGMAMITCRDPLASSMHSNLANAFS 1693
Score = 40 (19.1 bits), Expect = 5.3e-49, Sum P(5) = 5.3e-49
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 645 LFTTAITVIENLLDGHTHIPNDPELTLRYK 674
LFT I ++L + N+P+L + K
Sbjct: 1437 LFTPTCAWIRSILKVLAELHNEPDLKINLK 1466
Score = 38 (18.4 bits), Expect = 8.4e-153, Sum P(5) = 8.4e-153
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 417 RRYCDSQVLTYQAERMPEQIRLKVGGVTPQ 446
++ CD ++LT P Q ++ + G Q
Sbjct: 1500 QQLCDVKLLTRPEAASPVQSKIHMSGSAEQ 1529
Score = 37 (18.1 bits), Expect = 2.9e-141, Sum P(4) = 2.9e-141
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 77 MVDLDLKSLVAEAYKK--GQQELLYVVPFVAKVMES 110
M D+ + KK G + L V+PF++K+ +S
Sbjct: 162 MDDMVASKTLTHLCKKLAGLFDPLVVLPFISKLAKS 197
Score = 37 (18.1 bits), Expect = 1.3e-119, Sum P(5) = 1.3e-119
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 442 GVTPQQMAVYEEFAR 456
GV+P+ +Y + AR
Sbjct: 220 GVSPEGAEIYNQIAR 234
Score = 37 (18.1 bits), Expect = 1.1e-83, Sum P(3) = 1.1e-83
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 885 KAFTLFVHQMNCHGILKSDELITR 908
K + ++Q+ GILK E + R
Sbjct: 1474 KELNVDLNQLQMDGILKDTEKLVR 1497
Score = 37 (18.1 bits), Expect = 1.9e-48, Sum P(6) = 1.9e-48
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 725 LIHLPQYDLALAHSMENG 742
++++ QY+ ++ +ENG
Sbjct: 383 ILYMLQYNFDMSRDIENG 400
>DICTYBASE|DDB_G0276029 [details] [associations]
symbol:DDB_G0276029 "putative CCR4-NOT complex
subunit 1" species:44689 "Dictyostelium discoideum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0030015 "CCR4-NOT core
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] dictyBase:DDB_G0276029 GO:GO:0005634
GO:GO:0005737 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0000122 GO:GO:0051726 GO:GO:0000288 GO:GO:0030015
GO:GO:0000175 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 OMA:ANIAGTR
RefSeq:XP_643319.1 ProteinModelPortal:Q75JL4
EnsemblProtists:DDB0220028 GeneID:8620365 KEGG:ddi:DDB_G0276029
InParanoid:Q75JL4 ProtClustDB:CLSZ2445457 Uniprot:Q75JL4
Length = 2526
Score = 607 (218.7 bits), Expect = 1.0e-134, Sum P(5) = 1.0e-134
Identities = 123/254 (48%), Positives = 174/254 (68%)
Query: 1059 VLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKF 1118
+L + + L L+P K PGF +AWL++++H++F+ ++L+ QK W + LL+ FKF
Sbjct: 2172 ILFCFVNALATLQPQKYPGFCFAWLDLLSHKSFMPKLLI--RQQKQW--FHALLVQHFKF 2227
Query: 1119 LAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILS 1178
L PFLR +LS+P YKG L+VLL+LLHDFPEFLC+YH+ CDVIP CIQ+RNLILS
Sbjct: 2228 LEPFLRGGDLSEPVRVLYKGTLKVLLLLLHDFPEFLCEYHFSLCDVIPNTCIQLRNLILS 2287
Query: 1179 AFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFL 1238
AFP NMRLPDPFTPNLK+D L DINQ P++ ++F + ++ K ++D Y K R P +FL
Sbjct: 2288 AFPRNMRLPDPFTPNLKIDMLPDINQPPKISSNFTASLKG--LKIEIDNYFKNRGPYSFL 2345
Query: 1239 AEVRAA--VQVSHEP----GSRYNTELMNAIVLYVGTQAILSIRAKS-LSPNNKTIAHSA 1291
+++ + E G++YN L+N++VLY+GT AI I+ KS ++P T + SA
Sbjct: 2346 LDLKNKHLLLTDKEEILAAGTKYNVPLINSLVLYIGTLAIPQIQRKSGVAP---TPSQSA 2402
Query: 1292 HMDIFLNFAVDLDT 1305
MDIF A+DLD+
Sbjct: 2403 PMDIFHRLALDLDS 2416
Score = 342 (125.4 bits), Expect = 1.0e-134, Sum P(5) = 1.0e-134
Identities = 76/234 (32%), Positives = 129/234 (55%)
Query: 229 QQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVV 288
QQ R ++ + N+ ++V + + P+ K V A ++++ E I+ VV
Sbjct: 1464 QQEENMRKDNKQSSIDLLSNLPRYLVYTPSIGAYAQSPIFKKAVPLAFDKAVREIIAPVV 1523
Query: 289 ERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANL 348
ER+V IAV T++++V KDFA + DE +M+ A+H + +NL +A++TC+D L+ SI A L
Sbjct: 1524 ERSVAIAVITSKELVSKDFATEADEQKMKRASHLMVQNLAGSLALVTCKDPLRVSIIAYL 1583
Query: 349 KHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEY-E 407
+ L N P + ++ +++ +N++ AC+ ++ A EKA+ ID+ LA Y +
Sbjct: 1584 RTLLQN--NNGLPPCEIPLEHAISLVCNENLDFACSIVETAATEKAIISIDEVLASSYND 1641
Query: 408 RRKHARSE-QRRYCDSQVLTYQA-ERMPEQIRLKVGGVTPQQMAVYEEFARNIP 459
R KH + + D LT +PE +R K GG+ P Q VYE+F N+P
Sbjct: 1642 RLKHREQMGSQPFFDMGYLTTTIYNTLPESLRPKPGGIQPDQFRVYEDFT-NLP 1694
Score = 278 (102.9 bits), Expect = 1.0e-134, Sum P(5) = 1.0e-134
Identities = 59/200 (29%), Positives = 109/200 (54%)
Query: 855 DPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFAT 914
DPPGL E LL++W+ ++ S K ++ Q+ +K++ +FFR
Sbjct: 2022 DPPGLREAVIALLQDWL-LFSS---TNTDQKILIQYLGQVLQISFMKNELYFIKFFRLGL 2077
Query: 915 SLVVG--VSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGV 972
+ + +S + +D++ + + ++VKH+ TK+N+L KVL ++ +
Sbjct: 2078 EYALERYAANVEIQSPQYLEIDSWCRFVVMMVKHADP-------TKLNMLTKVLSVLIKI 2130
Query: 973 LITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPG 1032
L D E F+Q PY RIF L ++L PDP+LE ++ +L + + L L+P K PG
Sbjct: 2131 LTKDYENNPSRFNQRPYLRIFENLLVDLTSPDPILEHVSNHILFCFVNALATLQPQKYPG 2190
Query: 1033 FAYAWLEIVAHRTFIGRMLV 1052
F +AWL++++H++F+ ++L+
Sbjct: 2191 FCFAWLDLLSHKSFMPKLLI 2210
Score = 261 (96.9 bits), Expect = 1.0e-134, Sum P(5) = 1.0e-134
Identities = 52/131 (39%), Positives = 87/131 (66%)
Query: 1 MKRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNL 60
+KR SIE NFH LY F+D + +P +++ V+ +++N+ LL+S+K + S+R+LLKNL
Sbjct: 1288 VKRVSIEANFHALYLAFIDRLCIPTISERVLFHSHQNVHTLLKSEKIRVDHSERSLLKNL 1347
Query: 61 GHWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEV 120
G WLG+ TL RN+P+L + K L+ A + G L+ +VPFVAK++E C +SK+
Sbjct: 1348 GGWLGLNTLARNKPLLQKVISPKDLLIYAAENGL--LIAIVPFVAKLLEHCQQSKVFRPP 1405
Query: 121 EIFLASLVTLV 131
++ +++ L+
Sbjct: 1406 NPWVMAILRLM 1416
Score = 187 (70.9 bits), Expect = 1.7e-118, Sum P(5) = 1.7e-118
Identities = 37/93 (39%), Positives = 62/93 (66%)
Query: 553 LALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRS 612
+ + P+ K V A ++++ E I+ VVER+V IAV T++++V KDFA + DE +M+
Sbjct: 1494 IGAYAQSPIFKKAVPLAFDKAVREIIAPVVERSVAIAVITSKELVSKDFATEADEQKMKR 1553
Query: 613 AAHHIARNLTAGMAMITCRDQLQQSIKANLKHL 645
A+H + +NL +A++TC+D L+ SI A L+ L
Sbjct: 1554 ASHLMVQNLAGSLALVTCKDPLRVSIIAYLRTL 1586
Score = 93 (37.8 bits), Expect = 1.0e-134, Sum P(5) = 1.0e-134
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 694 WTNKQITRC---LIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAF 750
W K IT L+ + + N V LI QLI++ +YDLAL+ M + + + F
Sbjct: 1894 WDQKVITTITSFLLFSTPDKKLNRVLVAGLIIHQLININEYDLALSKMMIDSRSAPPIDF 1953
Query: 751 CMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQPPEGLTALIDMLR 802
+ LL+ LVE A ++E +T ++L +I+S R P E L ++ ++
Sbjct: 1954 AISLLRFCLVENN-YANLSEFP--STFDLLQKISS--RSPSEMLAKTLEEIK 2000
Score = 48 (22.0 bits), Expect = 2.9e-77, Sum P(3) = 2.9e-77
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 732 DLALAHSMENGLNYVAVAFCMQLLQH 757
DL L ++ ENGL V F +LL+H
Sbjct: 1371 DL-LIYAAENGLLIAIVPFVAKLLEH 1395
Score = 43 (20.2 bits), Expect = 5.9e-75, Sum P(3) = 5.9e-75
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 301 QIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNAT 360
+I+ KD+ +P R I NL + +T D + + + ++ F A+
Sbjct: 2129 KILTKDYENNPSRFNQRPYLR-IFENL---LVDLTSPDPILEHVSNHILFCFVNALATLQ 2184
Query: 361 PQQ 363
PQ+
Sbjct: 2185 PQK 2187
Score = 37 (18.1 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 889 LFVHQMNCHGILKSDEL 905
LF N H +LKS+++
Sbjct: 1318 LFHSHQNVHTLLKSEKI 1334
Score = 37 (18.1 bits), Expect = 1.6e-52, Sum P(2) = 1.6e-52
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 935 AYAKLIALLVKHSGSGEHANSNTKINL----LNKVLGIISGVLITDQEARQHEFHQL 987
++ K L V + + E +SNT NL ++ +IS + ++ E Q+
Sbjct: 66 SFYKTWTLQVGSNNNNEQTDSNTISNLSFVIATQIKNLISNLTKKSYKSNSSELSQI 122
>RGD|1308009 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005778 "peroxisomal
membrane" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
RGD:1308009 GO:GO:0005778 GO:GO:0000932 InterPro:IPR007196
Pfam:PF04054 UniGene:Rn.56498 EMBL:BC086325 IPI:IPI00359049
STRING:Q5RK32 PRIDE:Q5RK32 UCSC:RGD:1308009 HOVERGEN:HBG106203
InParanoid:Q5RK32 ArrayExpress:Q5RK32 Genevestigator:Q5RK32
Uniprot:Q5RK32
Length = 455
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 182/271 (67%), Positives = 215/271 (79%)
Query: 1043 HRTFIGRMLVITPHQKVL--------SAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGR 1094
HR FI +L + + VL +A+C+ HILRP+K PGF YAWLE+++HR FI R
Sbjct: 70 HRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIAR 129
Query: 1095 MLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFL 1154
ML TP QKGWP+YAQLLID+FK+LAPFLRNVEL+KP YKG LRVLLVLLHDFPEFL
Sbjct: 130 MLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFL 189
Query: 1155 CDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFAS 1214
CDYHY FCDVIP NCIQ+RNLILSAFP NMRLPDPFTPNLKVD L++IN APR+ +F
Sbjct: 190 CDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG 249
Query: 1215 LIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHEPGSRYNTELMNAIVLYVGTQAILS 1274
+ P FKKDLD+YLKTRSPVTFL+++R+ +QVS+EPG+RYN +L+NA+VLYVGTQAI
Sbjct: 250 -VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAH 308
Query: 1275 IRAKSLSPNNKTIAHSAHMDIFLNFAVDLDT 1305
I K +P+ TI HSAHMDIF N AVDLDT
Sbjct: 309 IHNKGSTPSMSTITHSAHMDIFQNLAVDLDT 339
Score = 476 (172.6 bits), Expect = 5.1e-44, P = 5.1e-44
Identities = 92/147 (62%), Positives = 110/147 (74%)
Query: 921 SPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEAR 980
+PT R+K + LDA+ +LIALLVKHSG E N+ TKINLLNKVLGI+ GVL+ D + R
Sbjct: 3 NPTMIRAKCYHNLDAFVRLIALLVKHSG--EATNTVTKINLLNKVLGIVVGVLLQDHDVR 60
Query: 981 QHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEI 1040
Q EF QLPYHRIFIML LELN P+ VLE INFQ L+A+C+ HILRP+K PGF YAWLE+
Sbjct: 61 QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL 120
Query: 1041 VAHRTFIGRMLVITPHQKVLSAYCSVL 1067
++HR FI RML TP QK Y +L
Sbjct: 121 ISHRIFIARMLAHTPQQKGWPMYAQLL 147
>GENEDB_PFALCIPARUM|PF11_0049 [details] [associations]
symbol:PF11_0049 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 477 (173.0 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 98/255 (38%), Positives = 158/255 (61%)
Query: 1056 HQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDI 1115
+ K + A+ L IL P + P F +AWLE+++H+ F+ +L KGW +Y +LLI +
Sbjct: 2716 YNKFILAFGYYLCILNPIRVPAFVFAWLELISHKLFLPEIL---KSSKGWYIYNKLLIYL 2772
Query: 1116 FKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNL 1175
+FL FL+N L+ Y+G LR LL+LLHDFPEFLC Y++ FC+VIP NC+Q+RNL
Sbjct: 2773 LEFLYIFLKNNYLTDSIKILYRGTLRTLLILLHDFPEFLCVYNFSFCNVIPLNCVQLRNL 2832
Query: 1176 ILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPV 1235
ILSAFP N++LP PF PNLK+D L +I P + +F ++ KKD++ Y R+ +
Sbjct: 2833 ILSAFPRNIKLPHPFNPNLKIDELPEIKIPPVILNNFTFILIDYNIKKDINNYFLKRN-I 2891
Query: 1236 TFLAEVRAAVQVSHEPGS-----RYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHS 1290
+L ++ + + ++ + +YN L+NA+VLY+G +S+ + L +N + +H
Sbjct: 2892 IYLQKIHKKLIIKNKMKALYLKTKYNVSLINAVVLYIG----MSLPSSILIFHNSSQSHP 2947
Query: 1291 A-HMDIFLNFAVDLD 1304
A + ++L + D++
Sbjct: 2948 AIEIILYLTYKFDME 2962
Score = 290 (107.1 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 75/229 (32%), Positives = 125/229 (54%)
Query: 245 NIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVK 304
++GN ++I+ +ALFQ QP LK +V AV+R+I E I+ ++ER+V I T +I+
Sbjct: 1063 SLGNA---VIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIIC 1119
Query: 305 KDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQK 364
KDF L+ +E +R AAH + +L + +A+ TC++ L+ S+ +L+ L T Q
Sbjct: 1120 KDFCLETNEYLIRKAAHIMVASLASSLALATCKEPLRISLTQHLRQLLQPTSTKDCNDQV 1179
Query: 365 ELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQV 424
L++Q V I DN+EL C I++ IEKA+ DI++ L + ++ AR +S
Sbjct: 1180 -LIEQVVQILCADNLELGCNLIEQAVIEKAIKDINESLEPLFLTKEIARESDISLRESSH 1238
Query: 425 LTYQAERMPE--QIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAAL 471
L+ + E I +T + + +Y F NI PL + +AA+
Sbjct: 1239 LSKSKKMQLEFSHILNLENPITSKHLNIYTNFI-NI---SPLKKLEAAV 1283
Score = 220 (82.5 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 50/114 (43%), Positives = 69/114 (60%)
Query: 3 RASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSD-RTLLKNLG 61
RAS E N H ++ F+D++ P D +I TY I +L + + S RT+LKNLG
Sbjct: 674 RASKEVNLHNVFLEFIDKLSYPLFIDTIISMTYDCILILFKYINELKEVSAFRTVLKNLG 733
Query: 62 HWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSK 115
WLG +TLGRNRP+ LDLK ++ EAY KG L+ ++P V K++ES SK
Sbjct: 734 SWLGFITLGRNRPLKSKILDLKVVLFEAYDKGC--LVCILPMVCKILESIKLSK 785
Score = 194 (73.4 bits), Expect = 1.1e-73, Sum P(5) = 1.1e-73
Identities = 41/107 (38%), Positives = 67/107 (62%)
Query: 545 SAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALD 604
+AV + +ALFQ QP LK +V AV+R+I E I+ ++ER+V I T +I+ KDF L+
Sbjct: 1066 NAVIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIICKDFCLE 1125
Query: 605 PDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAIT 651
+E +R AAH + +L + +A+ TC++ L+ S+ +L+ L T
Sbjct: 1126 TNEYLIRKAAHIMVASLASSLALATCKEPLRISLTQHLRQLLQPTST 1172
Score = 166 (63.5 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 932 TLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHR 991
T+DA AK+I ++K + L KV+ I +++ + + F+Q PY+R
Sbjct: 2641 TIDALAKMIICMMKLID----IQQISPFVLFQKVMNIFCRIIVYESRKNKSNFNQRPYYR 2696
Query: 992 IFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRML 1051
+F+ + +E+N + E I + + A+ L IL P + P F +AWLE+++H+ F+ +L
Sbjct: 2697 LFLSILIEINKYEKSFEDIYNKFILAFGYYLCILNPIRVPAFVFAWLELISHKLFLPEIL 2756
Score = 65 (27.9 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 847 VRGIRDLDDPPGLFEKTEYLL----REWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKS 902
V G+R + P + + E ++ +WV + S + +PN+++ F ++ G+LK
Sbjct: 2115 VGGLRVVPRPQQVTNEHEEIISFAFNQWVKLT-SLNNIDNPNESYMKFFQSISNQGLLKI 2173
Query: 903 DELITRFF 910
D I FF
Sbjct: 2174 DSNIDNFF 2181
Score = 56 (24.8 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 710 YRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGL-NYV-AVAFCMQLLQHYLVE 761
Y+YN+ LIR LI + +Y L + N N+ + F + L ++ L++
Sbjct: 1604 YKYNVNVTAGLIRYNLIDIEKYKKYLEKELINNKENFTNLIEFVILLFKNILID 1657
Score = 44 (20.5 bits), Expect = 2.1e-82, Sum P(5) = 2.1e-82
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 664 PNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRA 723
PND + + ++ + L ++ K + + LI +E + +E V L +
Sbjct: 1594 PNDQDQYMNMYKYNVNVTAGLIRYNLIDIEKYKKYLEKELINNKENFTNLIEFVILLFKN 1653
Query: 724 QLI--HLPQYD 732
LI H+ +Y+
Sbjct: 1654 ILIDFHIYRYN 1664
Score = 43 (20.2 bits), Expect = 8.5e-81, Sum P(4) = 8.5e-81
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 861 EKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFAT 914
+K E ++ IY + +KD NKA + + N +++++E I + + T
Sbjct: 1277 KKLEAAVKALTLIYKNINDIKDSNKATPPYQYNGN---LIQNNEEINNYSKANT 1327
Score = 43 (20.2 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 889 LFVHQMNCHGILKSD-ELITR-FFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKH 946
L VH+ + G+L + ELI F+F V V P MFQ++ A++ LI + ++
Sbjct: 3013 LIVHRPHPWGLLITFIELIRNPIFKFWQCSFVSV--VPEIENMFQSI-AHSCLINQMEQY 3069
Query: 947 ---SGSGEHAN---------SNTKINLLNKV 965
S G ++N N KI+++N +
Sbjct: 3070 QNVSSMGINSNINNTNNSENENNKISVMNNI 3100
Score = 38 (18.4 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 931 QTLDAYAKLIALLVKHSGSGEHANS 955
+ LD AKL L+K++ ++ NS
Sbjct: 80 EELDITAKLFGKLIKNNLLMDYGNS 104
Score = 38 (18.4 bits), Expect = 7.9e-36, Sum P(4) = 7.9e-36
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 1273 LSIRAKSLSPNNKTIAHSAHMDIFLNF 1299
L++ A+ + NN+T+ S M + +
Sbjct: 1709 LNVEAQKIKENNETVYFSDVMQFCVEY 1735
Score = 37 (18.1 bits), Expect = 3.6e-80, Sum P(4) = 3.6e-80
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 888 TLFVHQMNCHGILKSDELITRFFRFATSLVVGVSP 922
TL V+ + H +LK EL T + A + ++ + P
Sbjct: 1391 TLEVN-LQLHKVLKKLELATGQLKEAINDIINLPP 1424
>UNIPROTKB|Q8IIW4 [details] [associations]
symbol:PF11_0049 "NOT family protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 477 (173.0 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 98/255 (38%), Positives = 158/255 (61%)
Query: 1056 HQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDI 1115
+ K + A+ L IL P + P F +AWLE+++H+ F+ +L KGW +Y +LLI +
Sbjct: 2716 YNKFILAFGYYLCILNPIRVPAFVFAWLELISHKLFLPEIL---KSSKGWYIYNKLLIYL 2772
Query: 1116 FKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNL 1175
+FL FL+N L+ Y+G LR LL+LLHDFPEFLC Y++ FC+VIP NC+Q+RNL
Sbjct: 2773 LEFLYIFLKNNYLTDSIKILYRGTLRTLLILLHDFPEFLCVYNFSFCNVIPLNCVQLRNL 2832
Query: 1176 ILSAFPGNMRLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPV 1235
ILSAFP N++LP PF PNLK+D L +I P + +F ++ KKD++ Y R+ +
Sbjct: 2833 ILSAFPRNIKLPHPFNPNLKIDELPEIKIPPVILNNFTFILIDYNIKKDINNYFLKRN-I 2891
Query: 1236 TFLAEVRAAVQVSHEPGS-----RYNTELMNAIVLYVGTQAILSIRAKSLSPNNKTIAHS 1290
+L ++ + + ++ + +YN L+NA+VLY+G +S+ + L +N + +H
Sbjct: 2892 IYLQKIHKKLIIKNKMKALYLKTKYNVSLINAVVLYIG----MSLPSSILIFHNSSQSHP 2947
Query: 1291 A-HMDIFLNFAVDLD 1304
A + ++L + D++
Sbjct: 2948 AIEIILYLTYKFDME 2962
Score = 290 (107.1 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 75/229 (32%), Positives = 125/229 (54%)
Query: 245 NIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVK 304
++GN ++I+ +ALFQ QP LK +V AV+R+I E I+ ++ER+V I T +I+
Sbjct: 1063 SLGNA---VIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIIC 1119
Query: 305 KDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQK 364
KDF L+ +E +R AAH + +L + +A+ TC++ L+ S+ +L+ L T Q
Sbjct: 1120 KDFCLETNEYLIRKAAHIMVASLASSLALATCKEPLRISLTQHLRQLLQPTSTKDCNDQV 1179
Query: 365 ELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEYERRKHARSEQRRYCDSQV 424
L++Q V I DN+EL C I++ IEKA+ DI++ L + ++ AR +S
Sbjct: 1180 -LIEQVVQILCADNLELGCNLIEQAVIEKAIKDINESLEPLFLTKEIARESDISLRESSH 1238
Query: 425 LTYQAERMPE--QIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERDAAL 471
L+ + E I +T + + +Y F NI PL + +AA+
Sbjct: 1239 LSKSKKMQLEFSHILNLENPITSKHLNIYTNFI-NI---SPLKKLEAAV 1283
Score = 220 (82.5 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 50/114 (43%), Positives = 69/114 (60%)
Query: 3 RASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSD-RTLLKNLG 61
RAS E N H ++ F+D++ P D +I TY I +L + + S RT+LKNLG
Sbjct: 674 RASKEVNLHNVFLEFIDKLSYPLFIDTIISMTYDCILILFKYINELKEVSAFRTVLKNLG 733
Query: 62 HWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSK 115
WLG +TLGRNRP+ LDLK ++ EAY KG L+ ++P V K++ES SK
Sbjct: 734 SWLGFITLGRNRPLKSKILDLKVVLFEAYDKGC--LVCILPMVCKILESIKLSK 785
Score = 194 (73.4 bits), Expect = 1.1e-73, Sum P(5) = 1.1e-73
Identities = 41/107 (38%), Positives = 67/107 (62%)
Query: 545 SAVALIQKLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALD 604
+AV + +ALFQ QP LK +V AV+R+I E I+ ++ER+V I T +I+ KDF L+
Sbjct: 1066 NAVIISPSIALFQIQPTLKRVVPVAVDRAIREIIASILERSVSICCVTTREIICKDFCLE 1125
Query: 605 PDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAIT 651
+E +R AAH + +L + +A+ TC++ L+ S+ +L+ L T
Sbjct: 1126 TNEYLIRKAAHIMVASLASSLALATCKEPLRISLTQHLRQLLQPTST 1172
Score = 166 (63.5 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 932 TLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQEARQHEFHQLPYHR 991
T+DA AK+I ++K + L KV+ I +++ + + F+Q PY+R
Sbjct: 2641 TIDALAKMIICMMKLID----IQQISPFVLFQKVMNIFCRIIVYESRKNKSNFNQRPYYR 2696
Query: 992 IFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRML 1051
+F+ + +E+N + E I + + A+ L IL P + P F +AWLE+++H+ F+ +L
Sbjct: 2697 LFLSILIEINKYEKSFEDIYNKFILAFGYYLCILNPIRVPAFVFAWLELISHKLFLPEIL 2756
Score = 65 (27.9 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 847 VRGIRDLDDPPGLFEKTEYLL----REWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKS 902
V G+R + P + + E ++ +WV + S + +PN+++ F ++ G+LK
Sbjct: 2115 VGGLRVVPRPQQVTNEHEEIISFAFNQWVKLT-SLNNIDNPNESYMKFFQSISNQGLLKI 2173
Query: 903 DELITRFF 910
D I FF
Sbjct: 2174 DSNIDNFF 2181
Score = 56 (24.8 bits), Expect = 1.2e-83, Sum P(5) = 1.2e-83
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 710 YRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGL-NYV-AVAFCMQLLQHYLVE 761
Y+YN+ LIR LI + +Y L + N N+ + F + L ++ L++
Sbjct: 1604 YKYNVNVTAGLIRYNLIDIEKYKKYLEKELINNKENFTNLIEFVILLFKNILID 1657
Score = 44 (20.5 bits), Expect = 2.1e-82, Sum P(5) = 2.1e-82
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 664 PNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRA 723
PND + + ++ + L ++ K + + LI +E + +E V L +
Sbjct: 1594 PNDQDQYMNMYKYNVNVTAGLIRYNLIDIEKYKKYLEKELINNKENFTNLIEFVILLFKN 1653
Query: 724 QLI--HLPQYD 732
LI H+ +Y+
Sbjct: 1654 ILIDFHIYRYN 1664
Score = 43 (20.2 bits), Expect = 8.5e-81, Sum P(4) = 8.5e-81
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 861 EKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFAT 914
+K E ++ IY + +KD NKA + + N +++++E I + + T
Sbjct: 1277 KKLEAAVKALTLIYKNINDIKDSNKATPPYQYNGN---LIQNNEEINNYSKANT 1327
Score = 43 (20.2 bits), Expect = 2.4e-36, Sum P(4) = 2.4e-36
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 889 LFVHQMNCHGILKSD-ELITR-FFRFATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKH 946
L VH+ + G+L + ELI F+F V V P MFQ++ A++ LI + ++
Sbjct: 3013 LIVHRPHPWGLLITFIELIRNPIFKFWQCSFVSV--VPEIENMFQSI-AHSCLINQMEQY 3069
Query: 947 ---SGSGEHAN---------SNTKINLLNKV 965
S G ++N N KI+++N +
Sbjct: 3070 QNVSSMGINSNINNTNNSENENNKISVMNNI 3100
Score = 38 (18.4 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 931 QTLDAYAKLIALLVKHSGSGEHANS 955
+ LD AKL L+K++ ++ NS
Sbjct: 80 EELDITAKLFGKLIKNNLLMDYGNS 104
Score = 38 (18.4 bits), Expect = 7.9e-36, Sum P(4) = 7.9e-36
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 1273 LSIRAKSLSPNNKTIAHSAHMDIFLNF 1299
L++ A+ + NN+T+ S M + +
Sbjct: 1709 LNVEAQKIKENNETVYFSDVMQFCVEY 1735
Score = 37 (18.1 bits), Expect = 3.6e-80, Sum P(4) = 3.6e-80
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 888 TLFVHQMNCHGILKSDELITRFFRFATSLVVGVSP 922
TL V+ + H +LK EL T + A + ++ + P
Sbjct: 1391 TLEVN-LQLHKVLKKLELATGQLKEAINDIINLPP 1424
>ASPGD|ASPL0000078074 [details] [associations]
symbol:AN4965 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5103 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 OrthoDB:EOG4SFDF0 OMA:VIQEQIN
RefSeq:XP_662569.1 ProteinModelPortal:Q5B3B5 STRING:Q5B3B5
EnsemblFungi:CADANIAT00005431 GeneID:2872761 KEGG:ani:AN4965.2
HOGENOM:HOG000196837 Uniprot:Q5B3B5
Length = 2317
Score = 397 (144.8 bits), Expect = 3.5e-72, Sum P(4) = 3.5e-72
Identities = 88/246 (35%), Positives = 142/246 (57%)
Query: 1056 HQKVLSAYCSVLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDI 1115
HQ+++ + L L+P P F Y W +V+HR F+ ML + P + GW Y +++
Sbjct: 1969 HQEMMFTLANKLLSLQPKYYPSFVYGWFSLVSHRFFMSSMLNM-PDRAGWGPYCEIMQVQ 2027
Query: 1116 FKFLAPFLRNVELSKPNLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNL 1175
++ L++ ++ + Y+G+LR+LL+L HDFPEF+ + H+QFC+VIPA+C Q+RNL
Sbjct: 2028 LSYIGEQLKSTTMTLVTMDLYRGMLRILLILHHDFPEFVAENHFQFCNVIPAHCAQLRNL 2087
Query: 1176 ILSAFPGNM-RLPDPFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSP 1234
+LSA+P + +LPDPF LKV+ L ++ +APR+ D A + A K +D L++ +
Sbjct: 2088 VLSAYPSSFQKLPDPFREGLKVERLEEMREAPRIAGDTAGPLLRAGIKNVIDNALQSNNV 2147
Query: 1235 V-TFLAEVRAAVQ--VSHEPGSRY-----NTELMNAIVLYVGTQAILSIRAKSLSPNNKT 1286
+ + ++R AV S E G + N L+NA+ LYVG Q +S+ +S
Sbjct: 2148 SDSVIQQIRDAVYDTESKESGLFHAPININLLLVNALALYVG-QGAVSVN-ESKGNTRAA 2205
Query: 1287 IAHSAH 1292
SAH
Sbjct: 2206 FESSAH 2211
Score = 303 (111.7 bits), Expect = 3.5e-72, Sum P(4) = 3.5e-72
Identities = 72/196 (36%), Positives = 115/196 (58%)
Query: 267 VLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARN 326
VL+ +V +AVER+I E I+ VVER+V IA + Q+V KDFA++ DE + R AA ++ R
Sbjct: 1339 VLRQIVHSAVERAIAEIITPVVERSVTIASISTVQLVSKDFAMELDEEKFRHAAANMVRQ 1398
Query: 327 LTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFI 386
L +A++TC++ L+ S+ N + ++ P + L + +C DN++ AC +
Sbjct: 1399 LAGSLALVTCKEPLKVSM-TNYIRMIQQEYSDQ-PMPEGL----ILMCVNDNLDAACGIV 1452
Query: 387 QKTAIEKALPDIDKHLAGEYE-RRKH-ARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVT 444
+K A EK+LP+I+K + + E RR+H A + D +T +PE R GG+
Sbjct: 1453 EKAAEEKSLPEIEKVIESQLEARRRHRAARPSEPFIDPS-MTRWGLFIPEPYRQTPGGLN 1511
Query: 445 PQQMAVYEEFARNIPG 460
+Q+A+YEEFAR G
Sbjct: 1512 KEQLAIYEEFARQARG 1527
Score = 224 (83.9 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 58/215 (26%), Positives = 101/215 (46%)
Query: 861 EKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVVG- 919
++ EY+ EW+ IY +P V ++ + F+ M+ ++ + E FFR + + V
Sbjct: 1816 DQMEYIFTEWIGIYKAPGAV---DRTYYAFLKDMHQRQVMANQEDSALFFRLSIDISVAR 1872
Query: 920 ---VSPTPTRS--KMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLI 974
S P+ S + F +DA AKL+ LLVK G G +K N +L ++ VL
Sbjct: 1873 FEHESQNPSGSLDEAFLYIDALAKLVVLLVKFQGEGTGPVKTSKSAYFNSILSVLLLVLN 1932
Query: 975 TDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRPSKQPGFA 1034
Q R F+Q + R+F + E ++ + +++ + L L+P P F
Sbjct: 1933 HHQVMRGEAFNQRVFFRLFSSILCEYSMSGLQHSDQHQEMMFTLANKLLSLQPKYYPSFV 1992
Query: 1035 YAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHI 1069
Y W +V+HR F+ ML + P + YC ++ +
Sbjct: 1993 YGWFSLVSHRFFMSSMLNM-PDRAGWGPYCEIMQV 2026
Score = 192 (72.6 bits), Expect = 3.5e-72, Sum P(4) = 3.5e-72
Identities = 44/130 (33%), Positives = 72/130 (55%)
Query: 2 KRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLG 61
+RA ++ NF LY + LD I + V++ETY + LL S+ + + ++R LKNLG
Sbjct: 1105 ERAKLQPNFQQLYLDLLDRIDDKILWVEVLRETYASTSKLLNSEATLGSSTERGHLKNLG 1164
Query: 62 HWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVE 121
WLG LT+ +++PI + K L+ EAY Q L V+PF KV+ ++S +
Sbjct: 1165 SWLGSLTIAKDKPIKHKHIWFKGLLLEAYDS--QRLTIVIPFTCKVLVQATKSTVFKPPN 1222
Query: 122 IFLASLVTLV 131
+L ++ L+
Sbjct: 1223 PWLMDIIALL 1232
Score = 166 (63.5 bits), Expect = 6.5e-58, Sum P(4) = 6.5e-58
Identities = 35/78 (44%), Positives = 55/78 (70%)
Query: 561 VLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARN 620
VL+ +V +AVER+I E I+ VVER+V IA + Q+V KDFA++ DE + R AA ++ R
Sbjct: 1339 VLRQIVHSAVERAIAEIITPVVERSVTIASISTVQLVSKDFAMELDEEKFRHAAANMVRQ 1398
Query: 621 LTAGMAMITCRDQLQQSI 638
L +A++TC++ L+ S+
Sbjct: 1399 LAGSLALVTCKEPLKVSM 1416
Score = 51 (23.0 bits), Expect = 3.5e-72, Sum P(4) = 3.5e-72
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 738 SMENGLNYV-AVAFCMQLLQHYLVEERGTAGVTESDMLNT-LEVLIRIASHHR 788
S++ Y+ A+A + LL + E G ++S N+ L VL+ + +HH+
Sbjct: 1883 SLDEAFLYIDALAKLVVLLVKFQGEGTGPVKTSKSAYFNSILSVLLLVLNHHQ 1935
Score = 44 (20.5 bits), Expect = 5.8e-28, Sum P(4) = 5.8e-28
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 682 KALQDLRAFGVQWTNKQITRCLIECREEYRYNLEAVDTLIRAQLIH--LPQYDLALAHSM 739
K +Q+L FG + + R ++E +Y+ + + + + A ++H + +Y + +
Sbjct: 857 KKMQEL--FGKMYHEELSLREILELMRQYKSSRDPAEQDLFACMVHGLIDEYHCYHEYPL 914
Query: 740 ENGLNYVAVAF 750
E L AV F
Sbjct: 915 E-ALTKTAVMF 924
Score = 42 (19.8 bits), Expect = 4.7e-45, Sum P(4) = 4.7e-45
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 168 DLVPSYYLKDPDNLKFSELQLAVTHKKPPPQALTQ 202
D++ Y P NL Q AV H+ P PQ T+
Sbjct: 1546 DVLQEPYPPIP-NLSTPAEQPAVPHRTPQPQQDTR 1579
Score = 41 (19.5 bits), Expect = 6.9e-45, Sum P(3) = 6.9e-45
Identities = 31/119 (26%), Positives = 47/119 (39%)
Query: 733 LALAHSMENGLN--YVAVAFCMQL-LQHYLVEERGTAGVTESDMLNTLEVLIRIASHHRQ 789
+ L H E LN + C L + H +E V D T+E + A+
Sbjct: 1233 MELYHFAELKLNLKFEIEVLCKDLEIDHKAIEP----SVIIRDRSTTIEESLSTANI--- 1285
Query: 790 PPEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVH--IHSGILQ 846
PEGL A DM + Q + ER A L++ LP+ P+ + S +L+
Sbjct: 1286 -PEGLEAFEDMALTSI-SQSIRNERLSPAAILST-LPSLDKILVLPPSASSMVDSNVLR 1341
Score = 38 (18.4 bits), Expect = 3.8e-56, Sum P(4) = 3.8e-56
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 15 SNFLDEIKLPDVTDMVIKETYRNIK---VLLRSDKGIAN 50
S FLD KL + + + T++ + +++D +AN
Sbjct: 314 STFLDHFKLDPIVKVSLALTFKTANKSDLRVKADAILAN 352
Score = 37 (18.1 bits), Expect = 1.9e-56, Sum P(4) = 1.9e-56
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 794 LTALIDMLRANHHDQPM 810
+T I M++ + DQPM
Sbjct: 1416 MTNYIRMIQQEYSDQPM 1432
>SGD|S000000689 [details] [associations]
symbol:CDC39 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000749
"response to pheromone involved in conjugation with cellular
fusion" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0030015 "CCR4-NOT core
complex" evidence=IPI] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA;IPI] [GO:0007124 "pseudohyphal growth" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IGI;IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IPI]
[GO:0003674 "molecular_function" evidence=ND] [GO:0051726
"regulation of cell cycle" evidence=IMP] SGD:S000000689
GO:GO:0005634 GO:GO:0005737 EMBL:X59720 EMBL:BK006937 GO:GO:0000122
GO:GO:0051726 GO:GO:0006368 GO:GO:0007124 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 PDB:4B8C PDBsum:4B8C eggNOG:COG5103
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 GeneTree:ENSGT00390000014869 GO:GO:0000749 EMBL:X70151
PIR:S28417 RefSeq:NP_010017.2 PDB:4B89 PDB:4B8A PDB:4B8B
PDBsum:4B89 PDBsum:4B8A PDBsum:4B8B ProteinModelPortal:P25655
DIP:DIP-1202N IntAct:P25655 MINT:MINT-383459 STRING:P25655
PaxDb:P25655 PeptideAtlas:P25655 EnsemblFungi:YCR093W GeneID:850455
KEGG:sce:YCR093W HOGENOM:HOG000057131 OMA:VIQEQIN OrthoDB:EOG43XZBJ
NextBio:966081 Genevestigator:P25655 GermOnline:YCR093W
Uniprot:P25655
Length = 2108
Score = 314 (115.6 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 81/285 (28%), Positives = 150/285 (52%)
Query: 1035 YAWLEIVAHRTFIGRMLVITPHQKVL-------SAYCSVLHILRPSKQPGFAYAWLEIVA 1087
Y W I H F+ R+ + Q+++ + + LH L+P PGF++AW+ +++
Sbjct: 1701 YEWATIRTHN-FV-RISDSSTRQELIEFDSVFYNTFSGYLHALQPFAFPGFSFAWVTLLS 1758
Query: 1088 HRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVLL 1147
HR + ML + P++ GW L+ID+FKFL + +S YKG LRV+L +
Sbjct: 1759 HRMLLPIMLRL-PNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILGIS 1817
Query: 1148 HDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFTPNLKVDTLADINQAPR 1207
+D P FL + HY+ + +P Q++N+ILSA P NM +P+P+ +L ++ + + P
Sbjct: 1818 NDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPYDVDLNMEDIPACKELPE 1877
Query: 1208 MHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVSHE--PGSRYN-----TELM 1260
+ D +I + KK +D YL+ S + A + +++ G Y+ ++L+
Sbjct: 1878 VFFD--PVIDLHSLKKPVDNYLRIPSNSLLRTILSAIYKDTYDIKKGVGYDFLSVDSKLI 1935
Query: 1261 NAIVLYVGTQAILSIRAKSLSP--NNKTIAHSAHMDIFLNFAVDL 1303
AIVL+VG +A + + S + N K+ ++ ++ N ++++
Sbjct: 1936 RAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTLLFNLIQNGSIEM 1980
Score = 249 (92.7 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 67/217 (30%), Positives = 118/217 (54%)
Query: 247 GNIAPHIVINSQLA--LFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVK 304
G+I+ N+ L +F P LK + + A+ +S+ E + VVE++ IAV T +I+
Sbjct: 1065 GSISHDNPFNNLLGSTIFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIIL 1124
Query: 305 KDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQK 364
KDFA + DE ++++AA + R+L +A T + L++ I++ ++ L ++ ++ +
Sbjct: 1125 KDFATEVDESKLKTAAIIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAE 1184
Query: 365 ELMDQTVTICAGDNMELACAFIQKTAIEKALPDI-DKHLAGEYERRKHA-RSEQRRYCDS 422
EL D + +N+ +A I+K +++K+ D+ D+ + RR H R + +
Sbjct: 1185 EL-DTAIN----ENIGIALVLIEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQ 1239
Query: 423 QVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIP 459
Y +PE + LK GVTPQQ VYEEF +NIP
Sbjct: 1240 NTNPYSLS-LPEPLGLKNTGVTPQQFRVYEEFGKNIP 1275
Score = 179 (68.1 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 53/178 (29%), Positives = 86/178 (48%)
Query: 2 KRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLG 61
+RA E N+H LYS + + + ++ T R + VLL + A D+ LKNL
Sbjct: 827 QRAKTEPNYHDLYSKVIVAMGSGLLHQFMVNVTLRQLFVLLSTKDEQA--IDKKHLKNLA 884
Query: 62 HWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVE 121
WLG +TL N+PI ++ + ++ EAYK+ + E+ VVPFV K+++ S SK+
Sbjct: 885 SWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEI--VVPFVTKILQRASESKIFKPPN 942
Query: 122 IFLASLVTLVGVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPD 179
+ ++ L+ N L E V L+ + L K L PS ++ P+
Sbjct: 943 PWTVGILKLLIELNEKANWKLSLTFEVEVLLK-------SFNLTTKSLKPSNFINTPE 993
Score = 147 (56.8 bits), Expect = 9.5e-41, Sum P(6) = 9.5e-41
Identities = 53/207 (25%), Positives = 95/207 (45%)
Query: 861 EKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILK-SDELITRFFRFATSLVVG 919
EK + EWV + V++ + T+F+ Q+ G++ +D L+T F + + L V
Sbjct: 1570 EKLYLVFTEWVKLLQR---VENNDVITTVFIKQLVEKGVISDTDNLLT-FVKSSLELSVS 1625
Query: 920 V--SPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLITDQ 977
PT ++F +DA LI L+ G + +T+ + +N + +I V D
Sbjct: 1626 SFKESDPT-DEVFIAIDALGSLIIKLLILQGFKD----DTRRDYINAIFSVIVLVFAKDH 1680
Query: 978 EARQHEFHQLPYHRIFIMLFLE---------LNVPDPVL--EAINFQVL--SAYCSVLHI 1024
F++ PY R+F + E + + D E I F + + + LH
Sbjct: 1681 SQEGTTFNERPYFRLFSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHA 1740
Query: 1025 LRPSKQPGFAYAWLEIVAHRTFIGRML 1051
L+P PGF++AW+ +++HR + ML
Sbjct: 1741 LQPFAFPGFSFAWVTLLSHRMLLPIML 1767
Score = 136 (52.9 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
Identities = 30/91 (32%), Positives = 56/91 (61%)
Query: 555 LFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAA 614
+F P LK + + A+ +S+ E + VVE++ IAV T +I+ KDFA + DE ++++AA
Sbjct: 1081 IFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTAA 1140
Query: 615 HHIARNLTAGMAMITCRDQLQQSIKANLKHL 645
+ R+L +A T + L++ I++ ++ L
Sbjct: 1141 IIMVRHLAQSLARATSIEPLKEGIRSTMQSL 1171
Score = 70 (29.7 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 19/84 (22%), Positives = 41/84 (48%)
Query: 697 KQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQLLQ 756
K + L+ + ++N+ + +L+ LI + D L +M+N + + F M+L+Q
Sbjct: 1457 KDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELDNVLVTAMKNKMEN-STEFAMKLIQ 1515
Query: 757 HYLVEERGTAGVTESDMLNTLEVL 780
+ ++ + + D + TLE L
Sbjct: 1516 NTVLSDDPI--LMRMDFIKTLEHL 1537
Score = 49 (22.3 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 258 QLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIV 303
QLAL +Q V+ L T+ E +SL++E+ +++ + +V
Sbjct: 1415 QLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLSLVARKDVV 1460
Score = 48 (22.0 bits), Expect = 9.5e-41, Sum P(6) = 9.5e-41
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 1084 EIVAHRTFIGRMLVITPHQKGWPLYAQLLI---DIFKFLAPFLRNV 1126
EI+ R F+ R++V PH G ++ LI DI PF+++V
Sbjct: 2024 EIIL-RNFLKRIIVNKPHTWGVSVFFTQLINNNDINLLDLPFVQSV 2068
Score = 45 (20.9 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 552 KLALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIV 597
+LAL +Q V+ L T+ E +SL++E+ +++ + +V
Sbjct: 1415 QLALKVSQAVVNSLFATSESPLCREVLSLLLEKLCSLSLVARKDVV 1460
Score = 41 (19.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 132 GVQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKDLVPSYYLKDPDNL-KF--SELQL 188
G + T E + L+R + + K LV + D DNL F S L+L
Sbjct: 1563 GTKTTRTEKLYLVFTEWVKLLQRVENNDVITTVFIKQLVEKGVISDTDNLLTFVKSSLEL 1622
Query: 189 AVTHKK 194
+V+ K
Sbjct: 1623 SVSSFK 1628
Score = 38 (18.4 bits), Expect = 9.9e-40, Sum P(6) = 9.9e-40
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1039 EIVAHRTFIGRMLVITPHQKVLSAYCSVL 1067
EI+ R F+ R++V PH +S + + L
Sbjct: 2024 EIIL-RNFLKRIIVNKPHTWGVSVFFTQL 2051
>POMBASE|SPAC20G8.06 [details] [associations]
symbol:not1 "CCR4-Not complex subunit Not1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IC] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
PomBase:SPAC20G8.06 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0000289 GO:GO:0030015
GO:GO:0006354 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 PIR:T38128
RefSeq:NP_593323.1 ProteinModelPortal:P87112 STRING:P87112
EnsemblFungi:SPAC20G8.06.1 GeneID:2542001 KEGG:spo:SPAC20G8.06
OMA:ANIAGTR OrthoDB:EOG4SFDF0 NextBio:20803082 Uniprot:P87112
Length = 2100
Score = 302 (111.4 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 65/197 (32%), Positives = 112/197 (56%)
Query: 1070 LRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRNVELS 1129
++P P F +AWL +++H + ++L++ + K L++++L+ KFL L++ ++
Sbjct: 1748 IQPRSFPAFTFAWLSLISHSYLLPKVLLVN-NDKINDLFSEILMSFLKFLD--LKD-DID 1803
Query: 1130 KPNLTF-YKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPD 1188
K Y G LR++LVLLHDFP FL + YQ IP C+Q+RN++LSAFP ++ LPD
Sbjct: 1804 KAQFKLLYNGFLRIILVLLHDFPGFLATHCYQLIPYIPLECVQLRNMVLSAFPSDLHLPD 1863
Query: 1189 PFTPNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTFLAEVRAAVQVS 1248
PF LKV L ++ +AP + ++ ++ DL+A + P +A++ V S
Sbjct: 1864 PFAQGLKVGRLPEVTRAPLISNSVSASLEKFASALDLEACFSSSKPAE-VAKLLLEVYSS 1922
Query: 1249 HEPGSRYNTELMNAIVL 1265
+ ++ N E N +L
Sbjct: 1923 QDTPTKLN-EWANYFML 1938
Score = 218 (81.8 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 61/222 (27%), Positives = 111/222 (50%)
Query: 239 TSVNVANIGNIAPHIVINSQLA-LF-QAQPVLKPLVRTAVERSIHEWISLVVERAVKIAV 296
T V I + I + +A +F + +P +K + + +++S+ E IS VV R+V IA
Sbjct: 1100 TDVITQYIVAASSQITVTDAVAQVFGKPKPAIKNITQLIIQQSVLEIISAVVRRSVGIAA 1159
Query: 297 NTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAI 356
T + +++KDFA + + R+ AA +A+ L +AM+TCR+ LQ + N + + +
Sbjct: 1160 ITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQMLMINNFRTIALQDV 1219
Query: 357 TNATPQQKELMDQTVTICAGDNMELACAFIQKTAIEKALPDIDKHLAGEY-ERRKHARSE 415
N + +D+ V+ N+ +A + I+ A E A+ +ID + ER +H ++
Sbjct: 1220 ENVHAAVAQAIDELVS----QNLFVASSVIESVASETAIAEIDAEIEHMIVERVRHRKTT 1275
Query: 416 QRR-YCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFAR 456
+ D +P ++L +TPQQ +YE F R
Sbjct: 1276 PNLPFVDPAGAANLHLNLPSVLKLS-SELTPQQFQLYENFDR 1316
Score = 218 (81.8 bits), Expect = 2.4e-45, Sum P(3) = 2.4e-45
Identities = 56/220 (25%), Positives = 102/220 (46%)
Query: 850 IRDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRF 909
+ DLD+ L ++ + WV + + A D KA FV+Q++ GIL EL +F
Sbjct: 1574 LSDLDNKQQLNDQIIIVFVSWVHLLRNSA-TNDETKA--AFVYQLHKQGILSEPELCIQF 1630
Query: 910 FR--FATSLVVGVSPTPTRSKMFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLG 967
FR LV + + + +DAYA L+ +VK++ ++K L K++
Sbjct: 1631 FRCNLEAVLVAFLEAASVNAPDYFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIA 1690
Query: 968 IISGVLITDQEARQHEFHQLPYHRIFIMLFLELNVPDPVLEAINFQVLSAYCSVLHILRP 1027
+I GV + HQ + R+F + EL+ VLE+ + S ++P
Sbjct: 1691 LIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQP 1750
Query: 1028 SKQPGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVL 1067
P F +AWL +++H + ++L++ + K+ + +L
Sbjct: 1751 RSFPAFTFAWLSLISHSYLLPKVLLVN-NDKINDLFSEIL 1789
Score = 202 (76.2 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 46/130 (35%), Positives = 75/130 (57%)
Query: 2 KRASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLG 61
+R S E NF LY FL+E+K D+ +V ++T + I ++ ++ + S++T LKNLG
Sbjct: 909 QRVSREANFLSLYGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLG 968
Query: 62 HWLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKLISEVE 121
WLG +TL RN+PI + + K L+ E G+ + V+PFV KV+E S S +
Sbjct: 969 SWLGSITLLRNKPITTLQVSFKDLLLEGIDSGRIDR--VLPFVCKVLEKASSSVIFKPPN 1026
Query: 122 IFLASLVTLV 131
+L ++ L+
Sbjct: 1027 PWLMGILKLL 1036
Score = 166 (63.5 bits), Expect = 4.5e-48, Sum P(4) = 4.5e-48
Identities = 42/139 (30%), Positives = 73/139 (52%)
Query: 518 VQNTLLPSSLHALIEALVALRRTRDAHSAVALIQKLALFQAQPVLKPLVRTAVERSIHEW 577
V N P + + +VA AVA + + +P +K + + +++S+ E
Sbjct: 1091 VLNAEFPDGTDVITQYIVAASSQITVTDAVAQV----FGKPKPAIKNITQLIIQQSVLEI 1146
Query: 578 ISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQS 637
IS VV R+V IA T + +++KDFA + + R+ AA +A+ L +AM+TCR+ LQ
Sbjct: 1147 ISAVVRRSVGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPLQML 1206
Query: 638 IKANLKHLFTTAITVIENL 656
+ N + T A+ +EN+
Sbjct: 1207 MINNFR---TIALQDVENV 1222
Score = 43 (20.2 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 657 LDGHTHIPNDPELTLRYKDLHLRIVKALQD-LRAFGVQWTNKQITRCLIE-CREEYRYNL 714
LD + ND + + +HL A D +A V +KQ E C + +R NL
Sbjct: 1577 LDNKQQL-NDQIIIVFVSWVHLLRNSATNDETKAAFVYQLHKQGILSEPELCIQFFRCNL 1635
Query: 715 EAV-DTLIRAQLIHLPQY 731
EAV + A ++ P Y
Sbjct: 1636 EAVLVAFLEAASVNAPDY 1653
Score = 39 (18.8 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 31/139 (22%), Positives = 60/139 (43%)
Query: 268 LKPLVRTAVERSIHEWI-SLVVERAVKIAVNTAEQIVKKDFALDP-DEGRMRSAAHHIAR 325
L P +T + +++ W+ S+ + R I T Q+ KD L+ D GR+ + +
Sbjct: 956 LSPSEKTNL-KNLGSWLGSITLLRNKPI---TTLQVSFKDLLLEGIDSGRIDRVLPFVCK 1011
Query: 326 NLTAGMAMITCR--DQLQQSIKANLKHLFTTAITNATPQ-QKELMDQTVTICAGDNMELA 382
L + + + + I L L+ A + + EL+ + + DN+E +
Sbjct: 1012 VLEKASSSVIFKPPNPWLMGILKLLVELYQFADFRLNLKFEIELLLNNLNVKM-DNIEPS 1070
Query: 383 CAF----IQKTAIEKALPD 397
+ +QK +EK LP+
Sbjct: 1071 EMYRNHLVQKADLEKELPE 1089
Score = 38 (18.4 bits), Expect = 7.4e-35, Sum P(4) = 7.4e-35
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 224 PPLTMQQPPEPRYSYTSVNVANIGNIAPHIVINSQLALFQAQPVLKPLVRTAVERSIHEW 283
P +MQ+ P + VN G + + I + L AQ + L+ + I E
Sbjct: 1383 PYTSMQEVPADHELHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKSPFILEV 1442
Query: 284 ISLVVERAVKIAVNTA 299
S ++E + + TA
Sbjct: 1443 FSAILEYICQASTKTA 1458
Score = 37 (18.1 bits), Expect = 7.9e-26, Sum P(4) = 7.9e-26
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1108 YAQLLIDIFKFLAPFLRNVELSKPNLTFYKGVLRVLLVL--LHD-FPEFL 1154
YA LL+++ K+ SK ++ F K + ++ V LH+ EF+
Sbjct: 1659 YASLLVNVVKYTEGSTEGTVSSK-SVLFRKIIALIIGVFAELHNSMAEFV 1707
Score = 37 (18.1 bits), Expect = 7.9e-26, Sum P(4) = 7.9e-26
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 994 IMLFLE-LNVPDPVLEAINFQVL-SAYCSVLHILRPSKQPGF-AYAWLEIVAHRTFIGRM 1050
+M FL+ L++ D + +A F++L + + ++ +L PGF A +++ + +
Sbjct: 1789 LMSFLKFLDLKDDIDKA-QFKLLYNGFLRIILVLLHDF-PGFLATHCYQLIPYIP----L 1842
Query: 1051 LVITPHQKVLSAYCSVLHILRPSKQ 1075
+ VLSA+ S LH+ P Q
Sbjct: 1843 ECVQLRNMVLSAFPSDLHLPDPFAQ 1867
Score = 37 (18.1 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 3 RASIEFNFHVLYSNFLDEIKLPDVTDMV 30
+ +I + + +SN L+++ LP + ++
Sbjct: 1456 KTAINVSLYWNFSNDLEKLNLPIILSLI 1483
>CGD|CAL0001252 [details] [associations]
symbol:CDC39 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0007124 "pseudohyphal
growth" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] CGD:CAL0001252 GO:GO:0071216
GO:GO:0036180 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000168
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 RefSeq:XP_712097.1 ProteinModelPortal:Q59R01
STRING:Q59R01 GeneID:3646278 KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 245 (91.3 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 57/162 (35%), Positives = 93/162 (57%)
Query: 1132 NLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFT 1191
N+T YK + R+ + +LHDFPEFL + HYQ IP IQ+RN++LSA P ++ +PDPFT
Sbjct: 1727 NVT-YKAINRIFIGILHDFPEFLVECHYQLVTSIPRGYIQLRNIVLSATPKDIHVPDPFT 1785
Query: 1192 PNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTF--------LAEVRA 1243
LKV+ L +IN++P + + KK ++ +L+ +P L + +
Sbjct: 1786 QGLKVERLPEINESPVVFYKPIEDLSKVGLKKPVENFLRIPAPGLMRTIYNGLKLNQPKE 1845
Query: 1244 AVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNK 1285
++ +E +N +L+NA+VL+VG ++ A L PNN+
Sbjct: 1846 VNELGYEETINFNIKLINALVLHVGISSV----ADRL-PNNR 1882
Score = 170 (64.9 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 63/220 (28%), Positives = 105/220 (47%)
Query: 859 LFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVV 918
LF + Y+ EWV + G N+ FV + GIL + E + FF+ A + +
Sbjct: 1455 LFAQLGYIFAEWVRLLTH--GDDATNELQIEFVKGLIQSGILNNPEYVKTFFKAAIEISI 1512
Query: 919 GVSPTP--TRSK-MFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLIT 975
T RS+ +T A L L+V+ E +S I+ L KVLGII LI
Sbjct: 1513 TSFATEHELRSRTQHETYFAVDTLAMLIVRIVLLVE--DSKQAIDYLKKVLGIIILNLIN 1570
Query: 976 DQEARQHEFHQLPYHRIFIML---FLELNVPDPVLEAINFQV-LSAYCSVL-HILRPSKQ 1030
D E + +++ Y R F L + + +V D + +N V Y L + L+P
Sbjct: 1571 DHETSKANWNERAYFRFFSSLLSTWCDASVLDEEV-TVNLDVKFYNYLGELFNALQPIVL 1629
Query: 1031 PGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHIL 1070
PGF +AW+ +++HR ++ ++L + P +K Y +++ +L
Sbjct: 1630 PGFTFAWISLISHRMYLPKLLEL-PERK---GYATLVKLL 1665
Score = 158 (60.7 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 3 RASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGH 62
RA E N H LYS + + P + ++ + + + ++R+ K + S+R LKNLG
Sbjct: 699 RAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEVDYIIRNFKD--SRSERNQLKNLGA 756
Query: 63 WLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKL 116
WLG +TL ++P+ + LK L+ EAY L ++PFV K+++ SK+
Sbjct: 757 WLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPL--ILPFVCKILDQAQYSKV 808
Score = 134 (52.2 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 45/197 (22%), Positives = 87/197 (44%)
Query: 260 ALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSA 319
++F L+ + ++ R++ E + + V+ V T + ++ KDFA + D + R++
Sbjct: 973 SIFTQHANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEKFRNS 1032
Query: 320 AHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNM 379
+A +L+ M R L ++I+A + L + N P + L + I A N+
Sbjct: 1033 YQKLALSLSHAMVSCNGRKALVETIEATMLQL----LGN-NPNEVPLAELNSAIQA--NV 1085
Query: 380 ELACAFIQKTAIEKALPDIDKHLAGEYERRKH--ARSEQRRYCDSQVLTYQAERMPEQIR 437
L + E L I+ + E R+H A + + Y R+P +
Sbjct: 1086 GLCVDIVDVLVGESILDIIEARMQTEVFLREHHTATAPNEPFIAEGASDYSL-RLPNPLG 1144
Query: 438 LKVGGVTPQQMAVYEEF 454
L + G++ QQ+ +YE F
Sbjct: 1145 LALTGLSAQQLKIYEHF 1161
Score = 104 (41.7 bits), Expect = 6.9e-45, Sum P(5) = 6.9e-45
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 1066 VLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRN 1125
+ + L+P PGF +AW+ +++HR ++ ++L + P +KG+ +LL KF + N
Sbjct: 1620 LFNALQPIVLPGFTFAWISLISHRMYLPKLLEL-PERKGYATLVKLLSSALKFQQIYGNN 1678
Query: 1126 VELSK 1130
+ S+
Sbjct: 1679 KQSSR 1683
Score = 92 (37.4 bits), Expect = 2.4e-47, Sum P(5) = 2.4e-47
Identities = 21/92 (22%), Positives = 46/92 (50%)
Query: 554 ALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSA 613
++F L+ + ++ R++ E + + V+ V T + ++ KDFA + D + R++
Sbjct: 973 SIFTQHANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEKFRNS 1032
Query: 614 AHHIARNLTAGMAMITCRDQLQQSIKANLKHL 645
+A +L+ M R L ++I+A + L
Sbjct: 1033 YQKLALSLSHAMVSCNGRKALVETIEATMLQL 1064
Score = 91 (37.1 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 695 TNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQL 754
T K + L+ ++ ++N+ + +L++ QLI + DL++ ++ N V V F L
Sbjct: 1334 TAKDVIWWLVHSSDQRKFNMPVMLSLLKVQLIQPIKLDLSIGKLIKETNNPVVVKFAASL 1393
Query: 755 LQHYLVEERGTAGVTESDMLNTLEVLIRIASHH-----RQPPEGLTALIDML 801
L + E S+ NTL+ L + ++ RQ E + L +L
Sbjct: 1394 LTNIFTSEEMRPIALRSEFANTLDALSKYQANDQSEEDRQAKEATSTLFKLL 1445
Score = 45 (20.9 bits), Expect = 8.1e-36, Sum P(5) = 8.1e-36
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 388 KTAIEKALPD-IDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMP 433
KT+I +AL + +D+ +YER + + Q+ + +Q ++P
Sbjct: 360 KTSIYQALCEALDERAQKDYERGQQVQQAQQLQQQQALPPHQVLKIP 406
Score = 40 (19.1 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 911 RFATSLVVGV------SPTPTRSKMFQTLDAYAK 938
+FA SL+ + P RS+ TLDA +K
Sbjct: 1388 KFAASLLTNIFTSEEMRPIALRSEFANTLDALSK 1421
>UNIPROTKB|Q59R01 [details] [associations]
symbol:CDC39 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Cdc39p" species:237561 "Candida albicans SC5314"
[GO:0003674 "molecular_function" evidence=ND] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
CGD:CAL0001252 GO:GO:0071216 GO:GO:0036180 GO:GO:0009267
GO:GO:0036170 EMBL:AACQ01000168 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_712097.1
ProteinModelPortal:Q59R01 STRING:Q59R01 GeneID:3646278
KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 245 (91.3 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 57/162 (35%), Positives = 93/162 (57%)
Query: 1132 NLTFYKGVLRVLLVLLHDFPEFLCDYHYQFCDVIPANCIQMRNLILSAFPGNMRLPDPFT 1191
N+T YK + R+ + +LHDFPEFL + HYQ IP IQ+RN++LSA P ++ +PDPFT
Sbjct: 1727 NVT-YKAINRIFIGILHDFPEFLVECHYQLVTSIPRGYIQLRNIVLSATPKDIHVPDPFT 1785
Query: 1192 PNLKVDTLADINQAPRMHADFASLIQPATFKKDLDAYLKTRSPVTF--------LAEVRA 1243
LKV+ L +IN++P + + KK ++ +L+ +P L + +
Sbjct: 1786 QGLKVERLPEINESPVVFYKPIEDLSKVGLKKPVENFLRIPAPGLMRTIYNGLKLNQPKE 1845
Query: 1244 AVQVSHEPGSRYNTELMNAIVLYVGTQAILSIRAKSLSPNNK 1285
++ +E +N +L+NA+VL+VG ++ A L PNN+
Sbjct: 1846 VNELGYEETINFNIKLINALVLHVGISSV----ADRL-PNNR 1882
Score = 170 (64.9 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 63/220 (28%), Positives = 105/220 (47%)
Query: 859 LFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILKSDELITRFFRFATSLVV 918
LF + Y+ EWV + G N+ FV + GIL + E + FF+ A + +
Sbjct: 1455 LFAQLGYIFAEWVRLLTH--GDDATNELQIEFVKGLIQSGILNNPEYVKTFFKAAIEISI 1512
Query: 919 GVSPTP--TRSK-MFQTLDAYAKLIALLVKHSGSGEHANSNTKINLLNKVLGIISGVLIT 975
T RS+ +T A L L+V+ E +S I+ L KVLGII LI
Sbjct: 1513 TSFATEHELRSRTQHETYFAVDTLAMLIVRIVLLVE--DSKQAIDYLKKVLGIIILNLIN 1570
Query: 976 DQEARQHEFHQLPYHRIFIML---FLELNVPDPVLEAINFQV-LSAYCSVL-HILRPSKQ 1030
D E + +++ Y R F L + + +V D + +N V Y L + L+P
Sbjct: 1571 DHETSKANWNERAYFRFFSSLLSTWCDASVLDEEV-TVNLDVKFYNYLGELFNALQPIVL 1629
Query: 1031 PGFAYAWLEIVAHRTFIGRMLVITPHQKVLSAYCSVLHIL 1070
PGF +AW+ +++HR ++ ++L + P +K Y +++ +L
Sbjct: 1630 PGFTFAWISLISHRMYLPKLLEL-PERK---GYATLVKLL 1665
Score = 158 (60.7 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 3 RASIEFNFHVLYSNFLDEIKLPDVTDMVIKETYRNIKVLLRSDKGIANFSDRTLLKNLGH 62
RA E N H LYS + + P + ++ + + + ++R+ K + S+R LKNLG
Sbjct: 699 RAKAEPNNHELYSKLVKSLANPIFFEYILNVSLKEVDYIIRNFKD--SRSERNQLKNLGA 756
Query: 63 WLGMLTLGRNRPILMVDLDLKSLVAEAYKKGQQELLYVVPFVAKVMESCSRSKL 116
WLG +TL ++P+ + LK L+ EAY L ++PFV K+++ SK+
Sbjct: 757 WLGRITLANDKPLRRDYIALKFLLVEAYDFNSLPL--ILPFVCKILDQAQYSKV 808
Score = 134 (52.2 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 45/197 (22%), Positives = 87/197 (44%)
Query: 260 ALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSA 319
++F L+ + ++ R++ E + + V+ V T + ++ KDFA + D + R++
Sbjct: 973 SIFTQHANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEKFRNS 1032
Query: 320 AHHIARNLTAGMAMITCRDQLQQSIKANLKHLFTTAITNATPQQKELMDQTVTICAGDNM 379
+A +L+ M R L ++I+A + L + N P + L + I A N+
Sbjct: 1033 YQKLALSLSHAMVSCNGRKALVETIEATMLQL----LGN-NPNEVPLAELNSAIQA--NV 1085
Query: 380 ELACAFIQKTAIEKALPDIDKHLAGEYERRKH--ARSEQRRYCDSQVLTYQAERMPEQIR 437
L + E L I+ + E R+H A + + Y R+P +
Sbjct: 1086 GLCVDIVDVLVGESILDIIEARMQTEVFLREHHTATAPNEPFIAEGASDYSL-RLPNPLG 1144
Query: 438 LKVGGVTPQQMAVYEEF 454
L + G++ QQ+ +YE F
Sbjct: 1145 LALTGLSAQQLKIYEHF 1161
Score = 104 (41.7 bits), Expect = 6.9e-45, Sum P(5) = 6.9e-45
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 1066 VLHILRPSKQPGFAYAWLEIVAHRTFIGRMLVITPHQKGWPLYAQLLIDIFKFLAPFLRN 1125
+ + L+P PGF +AW+ +++HR ++ ++L + P +KG+ +LL KF + N
Sbjct: 1620 LFNALQPIVLPGFTFAWISLISHRMYLPKLLEL-PERKGYATLVKLLSSALKFQQIYGNN 1678
Query: 1126 VELSK 1130
+ S+
Sbjct: 1679 KQSSR 1683
Score = 92 (37.4 bits), Expect = 2.4e-47, Sum P(5) = 2.4e-47
Identities = 21/92 (22%), Positives = 46/92 (50%)
Query: 554 ALFQAQPVLKPLVRTAVERSIHEWISLVVERAVKIAVNTAEQIVKKDFALDPDEGRMRSA 613
++F L+ + ++ R++ E + + V+ V T + ++ KDFA + D + R++
Sbjct: 973 SIFTQHANLRRAFQASLSRAVRECTPHICNKVVETVVTTTKALITKDFATERDIEKFRNS 1032
Query: 614 AHHIARNLTAGMAMITCRDQLQQSIKANLKHL 645
+A +L+ M R L ++I+A + L
Sbjct: 1033 YQKLALSLSHAMVSCNGRKALVETIEATMLQL 1064
Score = 91 (37.1 bits), Expect = 1.1e-51, Sum P(5) = 1.1e-51
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 695 TNKQITRCLIECREEYRYNLEAVDTLIRAQLIHLPQYDLALAHSMENGLNYVAVAFCMQL 754
T K + L+ ++ ++N+ + +L++ QLI + DL++ ++ N V V F L
Sbjct: 1334 TAKDVIWWLVHSSDQRKFNMPVMLSLLKVQLIQPIKLDLSIGKLIKETNNPVVVKFAASL 1393
Query: 755 LQHYLVEERGTAGVTESDMLNTLEVLIRIASHH-----RQPPEGLTALIDML 801
L + E S+ NTL+ L + ++ RQ E + L +L
Sbjct: 1394 LTNIFTSEEMRPIALRSEFANTLDALSKYQANDQSEEDRQAKEATSTLFKLL 1445
Score = 45 (20.9 bits), Expect = 8.1e-36, Sum P(5) = 8.1e-36
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 388 KTAIEKALPD-IDKHLAGEYERRKHARSEQRRYCDSQVLTYQAERMP 433
KT+I +AL + +D+ +YER + + Q+ + +Q ++P
Sbjct: 360 KTSIYQALCEALDERAQKDYERGQQVQQAQQLQQQQALPPHQVLKIP 406
Score = 40 (19.1 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 911 RFATSLVVGV------SPTPTRSKMFQTLDAYAK 938
+FA SL+ + P RS+ TLDA +K
Sbjct: 1388 KFAASLLTNIFTSEEMRPIALRSEFANTLDALSK 1421
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1312 1285 0.00082 124 3 11 22 0.48 33
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 621 (66 KB)
Total size of DFA: 509 KB (2234 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 117.27u 0.15s 117.42t Elapsed: 00:00:13
Total cpu time: 117.28u 0.15s 117.43t Elapsed: 00:00:13
Start: Thu Aug 15 17:13:22 2013 End: Thu Aug 15 17:13:35 2013