RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1277
         (1312 letters)



>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
            {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 281

 Score = 30.9 bits (68), Expect = 1.0
 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 1277 AKSLSPNNKTIAHSAHMDIFLNFAVDLDTGATIR 1310
             + L+ + + I  S    I++    + DT    +
Sbjct: 237  PRHLNTDGRRILFSKGGSIYI---FNPDTEKIEK 267


>d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria
           meningitidis [TaxId: 487]}
          Length = 163

 Score = 29.2 bits (65), Expect = 2.0
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 8/119 (6%)

Query: 587 KIAVNTAEQIVKKDFALDPDEGRMRSAAHHIARNLTAGMAMITCRDQLQQSIKANLKHLF 646
            +    A  I +K F       +M  A      +             LQ++       + 
Sbjct: 50  AMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVI 109

Query: 647 TTAITVIENLLDGHTHIPNDPELTLRYKDLHLRIVKALQDLRAFGVQWTNKQITRCLIE 705
                   N L  +        L LR+    L     L    +FG  W  + + + LI 
Sbjct: 110 GAVSLKAINSLPEND-------LLLRFNAERLVFYTKLGTFTSFGKGWVRR-VAQNLIH 160


>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 105

 Score = 28.4 bits (63), Expect = 2.0
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 725 LIHLPQYDLALAHSMENGLNYVAVAFCMQLLQHYLVEERGTAGVTESDMLNTLEVLIRIA 784
           L+ +P+    L        +Y         ++H  V++ G   +  +   ++L  LI   
Sbjct: 25  LMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLIS-- 82

Query: 785 SHHRQPPEGLT 795
            ++ + P    
Sbjct: 83  -YYEKHPLYRK 92


>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 150

 Score = 28.6 bits (64), Expect = 3.0
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 348 LKHLFTTAITNATPQQKELMDQTVTICAGDNMELACAFIQ---KTAIEKALPDIDKHLAG 404
           L      A         + M +     A +N E+   +++   ++  E A+P   K    
Sbjct: 43  LAQTLQRA--PLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALKMA-T 99

Query: 405 EYERRKHAR 413
           E  R K  R
Sbjct: 100 EQGRMKFTR 108


>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
           SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 335

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 4/111 (3%)

Query: 791 PEGLTALIDMLRANHHDQPMLVERAPGAQTLNSGLPNFSLNAATGPAVHIHSGILQVRGI 850
           P GL     +L     DQ  L ER         G+ N++   +    V   + IL    I
Sbjct: 14  PSGLVTAKALLAEKAFDQVTLFERRGSP----GGVWNYTSTLSNKLPVPSTNPILTTEPI 69

Query: 851 RDLDDPPGLFEKTEYLLREWVTIYHSPAGVKDPNKAFTLFVHQMNCHGILK 901
                 P         L+    I       +        F H+       +
Sbjct: 70  VGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQR 120


>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 231

 Score = 28.1 bits (62), Expect = 7.0
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 412 ARSEQRRYCDSQVLTYQAERMPEQIRLKVGGVTPQQMAVYEEFARNIPGFQPLSERD 468
           + ++QR   +      + E   E+  L +  +    + V  EF + +PGFQ L   D
Sbjct: 19  SYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHED 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,748,971
Number of extensions: 225295
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 19
Length of query: 1312
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1216
Effective length of database: 1,089,516
Effective search space: 1324851456
Effective search space used: 1324851456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)