BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12771
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XZC8|SEM2A_SCHGR Semaphorin-2A OS=Schistocerca gregaria GN=SEMA-2A PE=2 SV=1
Length = 697
Score = 171 bits (432), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/94 (77%), Positives = 86/94 (91%)
Query: 57 ILENNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKA 116
++ +NLTHL RHE+VPGIG GIAKCP+DP D+STA+WVE GNPG+LP LYSGTNAEFTKA
Sbjct: 128 VVYSNLTHLQRHEYVPGIGVGIAKCPFDPEDSSTAVWVENGNPGDLPGLYSGTNAEFTKA 187
Query: 117 DTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDS 150
DTVIFRTDL N TTG++EY+FKRT+KYDSKWLD+
Sbjct: 188 DTVIFRTDLYNLTTGRREYSFKRTLKYDSKWLDN 221
>sp|Q24323|SEM2A_DROME Semaphorin-2A OS=Drosophila melanogaster GN=Sema-2a PE=1 SV=2
Length = 724
Score = 149 bits (377), Expect = 5e-36, Method: Composition-based stats.
Identities = 69/93 (74%), Positives = 77/93 (82%)
Query: 57 ILENNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKA 116
++ NLTHL R E+V G+G GIAKCPYDP DNSTAI+VE GNPG LP LYSGTNAEFTKA
Sbjct: 159 VIYANLTHLPRSEYVIGVGLGIAKCPYDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKA 218
Query: 117 DTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLD 149
DTVIFRTDL N + + EY FKRT+KYDSKWLD
Sbjct: 219 DTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLD 251
>sp|Q9P283|SEM5B_HUMAN Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4
Length = 1151
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G+A+CPYDP NSTA+ +G LY+ T +F+ D I+R+ +G
Sbjct: 224 NGVARCPYDPRHNSTAVISSQGE------LYAATVIDFSGRDPAIYRS----LGSGPP-- 271
Query: 136 TFKRTIKYDSKWLD 149
RT +Y+SKWL+
Sbjct: 272 --LRTAQYNSKWLN 283
>sp|Q60519|SEM5B_MOUSE Semaphorin-5B OS=Mus musculus GN=Sema5b PE=2 SV=2
Length = 1093
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G+A+CPYDP NSTA+ +G LY+ T +F+ D I+R+ +G
Sbjct: 166 NGVARCPYDPRHNSTAVISSQGE------LYAATVIDFSGRDPAIYRS----LGSGPP-- 213
Query: 136 TFKRTIKYDSKWLD 149
RT +Y+SKWL+
Sbjct: 214 --LRTAQYNSKWLN 225
>sp|Q60PR7|SEM2A_CAEBR Semaphorin-2A OS=Caenorhabditis briggsae GN=mab-20 PE=3 SV=1
Length = 656
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 78 IAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEYTF 137
I C DP NSTA+ V+ GNP + ++YSG + +I+R L GK+ +
Sbjct: 139 IGICVVDPTFNSTAVVVDNGNPEDASSVYSGIRTGMGGENHLIYRPPLTK--NGKQLHAS 196
Query: 138 KRTIKYDSKWLD 149
RTI D+KWL+
Sbjct: 197 IRTIYSDNKWLN 208
>sp|Q5R7F5|SEM6D_PONAB Semaphorin-6D OS=Pongo abelii GN=SEMA6D PE=2 SV=1
Length = 1017
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CP+D + A++ + LYS T A+F +D VI+R+ +
Sbjct: 161 SGLARCPFDARQTNVALFADG-------KLYSATVADFLASDAVIYRS--------MGDG 205
Query: 136 TFKRTIKYDSKWL 148
+ RTIKYDSKW+
Sbjct: 206 SALRTIKYDSKWI 218
>sp|Q8NFY4|SEM6D_HUMAN Semaphorin-6D OS=Homo sapiens GN=SEMA6D PE=2 SV=1
Length = 1073
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CP+D + A++ + LYS T A+F +D VI+R+ +
Sbjct: 161 SGLARCPFDARQTNVALFADG-------KLYSATVADFLASDAVIYRS--------MGDG 205
Query: 136 TFKRTIKYDSKWL 148
+ RTIKYDSKW+
Sbjct: 206 SALRTIKYDSKWI 218
>sp|Q76KF0|SEM6D_MOUSE Semaphorin-6D OS=Mus musculus GN=Sema6d PE=2 SV=1
Length = 1073
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CP+D + A++ + LYS T A+F +D VI+R+ +
Sbjct: 161 SGLARCPFDARQTNVALFADG-------KLYSATVADFLASDAVIYRS--------MGDG 205
Query: 136 TFKRTIKYDSKWL 148
+ RTIKYDSKW+
Sbjct: 206 SALRTIKYDSKWI 218
>sp|Q95XP4|SEM2A_CAEEL Semaphorin-2A OS=Caenorhabditis elegans GN=mab-20 PE=1 SV=1
Length = 658
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 67 RHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLL 126
R + P GI C DP N TA+ V+ GNP + ++YSG + +I+R L
Sbjct: 134 RDQQEPRTEIGI--CVVDPTFNFTAVVVDSGNPEDATSVYSGIRTGMGGENHLIYRPPLT 191
Query: 127 NFTTGKKEYTFKRTIKYDSKWLD 149
GK+ + RTI D+KWL+
Sbjct: 192 K--NGKQLHASIRTIYSDNKWLN 212
>sp|Q9H3T2|SEM6C_HUMAN Semaphorin-6C OS=Homo sapiens GN=SEMA6C PE=2 SV=4
Length = 930
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG A+CP+D ++ AI+ E +LYS T A+F +D V++R + G +
Sbjct: 164 SGQARCPFDATQSNVAIFAEG-------SLYSATAADFQASDAVVYR------SLGPQPP 210
Query: 136 TFKRTIKYDSKWL 148
R+ KYDSKWL
Sbjct: 211 L--RSAKYDSKWL 221
>sp|D3ZTD8|SEM5A_RAT Semaphorin-5A OS=Rattus norvegicus GN=Sema5a PE=1 SV=1
Length = 1074
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 60 NNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTV 119
+NLT + H+ + SG+A+CPY P NSTA+ G LY+ T +F D
Sbjct: 146 SNLTEI--HDQI----SGMARCPYSPQHNSTALLTASGE------LYAATAMDFPGRDPA 193
Query: 120 IFRTDLLNFTTGKKEYTFKRTIKYDSKWLD 149
I+R+ RT +Y+SKWL+
Sbjct: 194 IYRS--------LGTLPPLRTAQYNSKWLN 215
>sp|Q62217|SEM5A_MOUSE Semaphorin-5A OS=Mus musculus GN=Sema5a PE=2 SV=1
Length = 1077
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 60 NNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTV 119
+NLT + H+ + SG+A+CPY P NSTA+ G LY+ T +F D
Sbjct: 146 SNLTEI--HDQI----SGMARCPYSPQHNSTALLTASGE------LYAATAMDFPGRDPA 193
Query: 120 IFRTDLLNFTTGKKEYTFKRTIKYDSKWLD 149
I+R+ RT +Y+SKWL+
Sbjct: 194 IYRS--------LGTLPPLRTAQYNSKWLN 215
>sp|O88632|SEM3F_MOUSE Semaphorin-3F OS=Mus musculus GN=Sema3f PE=2 SV=2
Length = 785
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 17/85 (20%)
Query: 76 SGIAKCPYDPN-DNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKE 134
SG KCPYDP D ++A+ E+ LY+G +F D IFR T GK+
Sbjct: 196 SGKGKCPYDPKLDTASALINEE--------LYAGVYIDFMGTDAAIFR------TLGKQ- 240
Query: 135 YTFKRTIKYDSKWLDSFKSLIAKII 159
T RT +Y+S+WL+ + A++I
Sbjct: 241 -TAMRTDQYNSRWLNDPSFIHAELI 264
>sp|Q13275|SEM3F_HUMAN Semaphorin-3F OS=Homo sapiens GN=SEMA3F PE=2 SV=2
Length = 785
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 17/85 (20%)
Query: 76 SGIAKCPYDPN-DNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKE 134
SG KCPYDP D ++A+ E+ LY+G +F D IFR T GK+
Sbjct: 196 SGKGKCPYDPKLDTASALINEE--------LYAGVYIDFMGTDAAIFR------TLGKQ- 240
Query: 135 YTFKRTIKYDSKWLDSFKSLIAKII 159
T RT +Y+S+WL+ + A++I
Sbjct: 241 -TAMRTDQYNSRWLNDPSFIHAELI 264
>sp|Q9WTM3|SEM6C_MOUSE Semaphorin-6C OS=Mus musculus GN=Sema6c PE=2 SV=1
Length = 931
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG A+CP+D ++ AI+ E +LYS T A+F +D V++R + G +
Sbjct: 165 SGQARCPFDATQSTVAIFAEG-------SLYSATAADFQASDAVVYR------SLGPQPP 211
Query: 136 TFKRTIKYDSKWL 148
R+ KYDSKWL
Sbjct: 212 L--RSAKYDSKWL 222
>sp|Q13591|SEM5A_HUMAN Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3
Length = 1074
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 20/90 (22%)
Query: 60 NNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTV 119
+NLT + H+ + SG+A+CPY P NSTA+ G LY+ T +F D
Sbjct: 146 SNLTEI--HDQI----SGMARCPYSPQHNSTALLTAGGE------LYAATAMDFPGRDPA 193
Query: 120 IFRTDLLNFTTGKKEYTFKRTIKYDSKWLD 149
I+R+ L RT +Y+SKWL+
Sbjct: 194 IYRS--LGILPP------LRTAQYNSKWLN 215
>sp|Q9WTL3|SEM6C_RAT Semaphorin-6C OS=Rattus norvegicus GN=Sema6c PE=2 SV=1
Length = 960
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG A+CP+D ++ AI E +LYS T A+F +D V++R + G +
Sbjct: 163 SGQARCPFDATQSTVAISAEG-------SLYSATAADFQASDAVVYR------SLGPQPP 209
Query: 136 TFKRTIKYDSKWL 148
R+ KYDSKWL
Sbjct: 210 L--RSAKYDSKWL 220
>sp|Q9H2E6|SEM6A_HUMAN Semaphorin-6A OS=Homo sapiens GN=SEMA6A PE=1 SV=2
Length = 1030
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CPYD + A++ + LYS T +F D VI+R+ E
Sbjct: 160 SGMARCPYDAKHANVALFADG-------KLYSATVTDFLAIDAVIYRS--------LGES 204
Query: 136 TFKRTIKYDSKWL 148
RT+K+DSKWL
Sbjct: 205 PTLRTVKHDSKWL 217
>sp|Q24322|SEM1A_DROME Semaphorin-1A OS=Drosophila melanogaster GN=Sema-1a PE=2 SV=2
Length = 850
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDL 125
+G A CPYDP NST++ + LYSGT A+F+ +D +I+R L
Sbjct: 146 NGQAVCPYDPRHNSTSVLADN-------ELYSGTVADFSGSDPIIYREPL 188
>sp|O35464|SEM6A_MOUSE Semaphorin-6A OS=Mus musculus GN=Sema6a PE=1 SV=2
Length = 1031
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CPYD + A++ + LYS T +F D VI+R+ +
Sbjct: 160 SGMARCPYDAKHANIALFADG-------KLYSATVTDFLAIDAVIYRS--------LGDS 204
Query: 136 TFKRTIKYDSKWL 148
RT+K+DSKWL
Sbjct: 205 PTLRTVKHDSKWL 217
>sp|O70141|SEM6B_RAT Semaphorin-6B OS=Rattus norvegicus GN=Sema6b PE=2 SV=1
Length = 887
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CPYDP + A++ + L++ T +F D VI+R + G +
Sbjct: 170 SGMARCPYDPKHANVALFSDG-------MLFTATVTDFLAIDAVIYR------SLGDRPT 216
Query: 136 TFKRTIKYDSKWL 148
RT+K+DSKW
Sbjct: 217 L--RTVKHDSKWF 227
>sp|O54951|SEM6B_MOUSE Semaphorin-6B OS=Mus musculus GN=Sema6b PE=2 SV=1
Length = 886
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CPYDP + A++ + L++ T +F D VI+R + G +
Sbjct: 170 SGMARCPYDPKHANVALFSDG-------MLFTATVTDFLAIDAVIYR------SLGDRPT 216
Query: 136 TFKRTIKYDSKWL 148
RT+K+DSKW
Sbjct: 217 L--RTVKHDSKWF 227
>sp|Q9H3T3|SEM6B_HUMAN Semaphorin-6B OS=Homo sapiens GN=SEMA6B PE=1 SV=4
Length = 888
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG+A+CPYDP + A++ + L++ T +F D VI+R + G +
Sbjct: 169 SGMARCPYDPKHANVALFSDG-------MLFTATVTDFLAIDAVIYR------SLGDRPT 215
Query: 136 TFKRTIKYDSKWL 148
RT+K+DSKW
Sbjct: 216 L--RTVKHDSKWF 226
>sp|Q26473|SEM1A_SCHAM Semaphorin-1A OS=Schistocerca americana GN=SEMA-1A PE=1 SV=1
Length = 730
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 77 GIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY- 135
G CP+DP+ NSTAI+ E LYS T A+F+ D +I+R L + K+
Sbjct: 152 GRGLCPFDPDHNSTAIYSEG-------QLYSATVADFSGTDPLIYRGPLRTERSDLKQLN 204
Query: 136 --TFKRTIKYD 144
F T++Y+
Sbjct: 205 APNFVNTMEYN 215
>sp|Q17330|SEM1A_CAEEL Semaphorin-1A OS=Caenorhabditis elegans GN=smp-1 PE=2 SV=2
Length = 712
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 50 TKVFFWKILENNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGT 109
T F K E +T G G GI+ PYDP NS+A++V N L+ T
Sbjct: 129 THAFSPKCREYTVTEFGIRNTRQFDGQGIS--PYDPKHNSSALYVPGTN-----QLFVAT 181
Query: 110 NAEFTKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDS 150
+F D +I+R ++ T K RT YD++ L++
Sbjct: 182 VTDFVGNDALIYRKT-IDETPSSKSAANIRTQSYDARVLNA 221
>sp|Q9W7J1|SE3AA_DANRE Semaphorin-3aa OS=Danio rerio GN=sema3aa PE=2 SV=1
Length = 860
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G K PYDP S+++ ++ LYSGT+A+F D IFRT +
Sbjct: 165 NGRGKSPYDPKMQSSSLLLDG-------ELYSGTSADFMGRDFAIFRT--------LGSH 209
Query: 136 TFKRTIKYDSKWLD 149
RT ++DS+WL+
Sbjct: 210 HPIRTEQHDSRWLN 223
>sp|Q9W686|SE3AB_DANRE Semaphorin-3ab OS=Danio rerio GN=sema3ab PE=2 SV=1
Length = 778
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G K PYDP + ++ ++ LY+GT+A+F D IFR T GK
Sbjct: 165 NGRGKSPYDPKLQTASMLIDG-------ELYAGTSADFMGRDFAIFR------TLGKHHP 211
Query: 136 TFKRTIKYDSKWLD 149
RT ++DS+WL+
Sbjct: 212 I--RTEQHDSRWLN 223
>sp|Q14563|SEM3A_HUMAN Semaphorin-3A OS=Homo sapiens GN=SEMA3A PE=2 SV=1
Length = 771
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G K PYDP + ++ ++ LYSGT A+F D IFRT +
Sbjct: 164 NGRGKSPYDPKLLTASLLIDG-------ELYSGTAADFMGRDFAIFRT--------LGHH 208
Query: 136 TFKRTIKYDSKWLDSFKSLIAKII 159
RT ++DS+WL+ K + A +I
Sbjct: 209 HPIRTEQHDSRWLNDPKFISAHLI 232
>sp|Q90607|SEM3A_CHICK Semaphorin-3A OS=Gallus gallus GN=SEMA3A PE=1 SV=1
Length = 772
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G K PYDP + ++ V+ LYSGT A+F D IFRT +
Sbjct: 164 NGRGKSPYDPKLLTASLLVDG-------ELYSGTAADFMGRDFAIFRT--------LGHH 208
Query: 136 TFKRTIKYDSKWLDSFKSLIAKII 159
RT ++DS+WL+ + + A +I
Sbjct: 209 HPIRTEQHDSRWLNDPRFISAHLI 232
>sp|Q63548|SEM3A_RAT Semaphorin-3A OS=Rattus norvegicus GN=Sema3a PE=2 SV=1
Length = 772
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G K PYDP + ++ ++ LYSGT A+F D IFRT +
Sbjct: 164 NGRGKSPYDPKLLTASLLIDG-------ELYSGTAADFMGRDFAIFRT--------LGHH 208
Query: 136 TFKRTIKYDSKWLDSFKSLIAKII 159
RT ++DS+WL+ + + A +I
Sbjct: 209 HPIRTEQHDSRWLNDPRFISAHLI 232
>sp|O08665|SEM3A_MOUSE Semaphorin-3A OS=Mus musculus GN=Sema3a PE=1 SV=2
Length = 772
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
+G K PYDP + ++ ++ LYSGT A+F D IFRT +
Sbjct: 164 NGRGKSPYDPKLLTASLLIDG-------ELYSGTAADFMGRDFAIFRT--------LGHH 208
Query: 136 TFKRTIKYDSKWLDSFKSLIAKII 159
RT ++DS+WL+ + + A +I
Sbjct: 209 HPIRTEQHDSRWLNDPRFISAHLI 232
>sp|Q13214|SEM3B_HUMAN Semaphorin-3B OS=Homo sapiens GN=SEMA3B PE=2 SV=1
Length = 749
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 72 PG-IGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTT 130
PG I G K PYDP + ++ V + LYSG A+ D IFR +
Sbjct: 158 PGRIEDGKGKSPYDPRHRAASVLVGE-------ELYSGVAADLMGRDFTIFR------SL 204
Query: 131 GKKEYTFKRTIKYDSKWLDSFK 152
G++ RT +DS+WL+ K
Sbjct: 205 GQRPSL--RTEPHDSRWLNEPK 224
>sp|Q62177|SEM3B_MOUSE Semaphorin-3B OS=Mus musculus GN=Sema3b PE=2 SV=2
Length = 748
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 77 GIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEYT 136
G K PYDP + ++ V + LYSG A+ D IFR+ N +
Sbjct: 163 GKGKTPYDPRHRAASVLVGE-------ELYSGVTADLMGRDFTIFRSLGQNPSL------ 209
Query: 137 FKRTIKYDSKWLDSFK 152
RT +DS+WL+ K
Sbjct: 210 --RTEPHDSRWLNEPK 223
>sp|Q62181|SEM3C_MOUSE Semaphorin-3C OS=Mus musculus GN=Sema3c PE=1 SV=2
Length = 751
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG +C ++PN N+ ++ + + L+SG +F D IFR + K+
Sbjct: 161 SGKGRCSFNPNVNTVSVMINE-------ELFSGMYIDFMGTDAAIFR------SLTKRNA 207
Query: 136 TFKRTIKYDSKWL 148
RT +++SKWL
Sbjct: 208 V--RTDQHNSKWL 218
>sp|Q9NPR2|SEM4B_HUMAN Semaphorin-4B OS=Homo sapiens GN=SEMA4B PE=1 SV=3
Length = 832
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 77 GIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFT 129
G +CP+DPN STA+ V+ LY+GT + F D I R+ L T
Sbjct: 176 GKGRCPFDPNFKSTALVVDG-------ELYTGTVSSFQGNDPAISRSQSLRPT 221
>sp|Q99985|SEM3C_HUMAN Semaphorin-3C OS=Homo sapiens GN=SEMA3C PE=1 SV=2
Length = 751
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG +C ++PN N+ ++ + + L+SG +F D IFR + K+
Sbjct: 161 SGKGRCSFNPNVNTVSVMINE-------ELFSGMYIDFMGTDAAIFR------SLTKRNA 207
Query: 136 TFKRTIKYDSKWL 148
RT +++SKWL
Sbjct: 208 V--RTDQHNSKWL 218
>sp|Q5RE75|SEM3C_PONAB Semaphorin-3C OS=Pongo abelii GN=SEMA3C PE=2 SV=1
Length = 751
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG +C ++PN N+ ++ + + L+SG +F D IFR + K+
Sbjct: 161 SGKGRCSFNPNVNTVSVMINE-------ELFSGMYIDFMGTDAAIFR------SLTKRNA 207
Query: 136 TFKRTIKYDSKWL 148
RT +++SKWL
Sbjct: 208 V--RTDQHNSKWL 218
>sp|A7MB70|SEM3C_BOVIN Semaphorin-3C OS=Bos taurus GN=SEMA3C PE=2 SV=1
Length = 751
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG +C ++PN N+ ++ + + L+SG +F D IFR + K+
Sbjct: 161 SGKGRCSFNPNVNTVSVMINE-------ELFSGMYIDFMGTDAAIFR------SLTKRNA 207
Query: 136 TFKRTIKYDSKWL 148
RT +++SKWL
Sbjct: 208 V--RTDQHNSKWL 218
>sp|Q26972|SEM1A_TRICF Semaphorin-1A OS=Tribolium confusum GN=SEMA-1A PE=2 SV=1
Length = 712
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 77 GIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFR 122
GI CPY+P NST++ L+S T A+F+ D +I+R
Sbjct: 150 GIGLCPYNPEHNSTSVSYNG-------QLFSATVADFSGGDPLIYR 188
>sp|O42236|SEM3C_CHICK Semaphorin-3C OS=Gallus gallus GN=SEMA3C PE=2 SV=1
Length = 751
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
SG +C ++PN N+ ++ + + L+SG +F D IFR + K+
Sbjct: 161 SGKGRCSFNPNVNTVSVMINE-------ELFSGMYIDFMGTDAAIFR------SLTKRNA 207
Query: 136 TFKRTIKYDSKWL 148
RT +++SKWL
Sbjct: 208 V--RTDQHNSKWL 218
>sp|Q62179|SEM4B_MOUSE Semaphorin-4B OS=Mus musculus GN=Sema4b PE=1 SV=2
Length = 823
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 77 GIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRT 123
G +CP+DPN STA+ V+ LY+GT + F D I R+
Sbjct: 168 GKGRCPFDPNFKSTALVVDG-------ELYTGTVSSFQGNDPAISRS 207
>sp|Q86T29|ZN605_HUMAN Zinc finger protein 605 OS=Homo sapiens GN=ZNF605 PE=2 SV=1
Length = 641
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 32 KKVVEEEEEEEKKKERGFTKVFFWKILEN--NLTHLGRHEHVPGIGSGIAKCPYD---PN 86
K + + ++ K ERG F KI + N+ H+G H G G KCP+D P
Sbjct: 53 KMWLRDNQDNLKSMERGHKYDVFGKIFNSSINIVHVGLRSHKCGTGEKSLKCPFDLLIPK 112
Query: 87 DN 88
+N
Sbjct: 113 NN 114
>sp|Q9NS98|SEM3G_HUMAN Semaphorin-3G OS=Homo sapiens GN=SEMA3G PE=2 SV=1
Length = 782
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 67 RHEHV----PG-IGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIF 121
R EHV PG + SG +CP++P+ + +++ LY+G A+F + +IF
Sbjct: 151 RGEHVLHLEPGSVESGRGRCPHEPSRPFASTFIDG-------ELYTGLTADFLGREAMIF 203
Query: 122 RT 123
R+
Sbjct: 204 RS 205
>sp|Q9W6G6|SEM3D_DANRE Semaphorin-3D OS=Danio rerio GN=sema3d PE=2 SV=1
Length = 764
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 70 HVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRT 123
H + SG KCP+DPN ++ ++ LY+GT ++F D+ R+
Sbjct: 176 HSNTMESGRMKCPFDPNQPFASVLTDQ-------YLYAGTASDFLGKDSTFTRS 222
>sp|P70275|SEM3E_MOUSE Semaphorin-3E OS=Mus musculus GN=Sema3e PE=1 SV=3
Length = 775
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 59 ENNLTHLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADT 118
E L HL H G G +CP+DPN + + V GN L++G +++ D+
Sbjct: 152 EEPLFHLESHRSERGRG----RCPFDPNSSFVSTLV--GN-----ELFAGLYSDYWGRDS 200
Query: 119 VIFRT 123
IFR+
Sbjct: 201 AIFRS 205
>sp|Q8BH34|SEM3D_MOUSE Semaphorin-3D OS=Mus musculus GN=Sema3d PE=1 SV=1
Length = 777
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRT 123
SG KCP+DP ++ ++ LYSGT ++F DT R+
Sbjct: 178 SGRLKCPFDPQQPFASVMTDE-------HLYSGTASDFLGKDTAFTRS 218
>sp|O95025|SEM3D_HUMAN Semaphorin-3D OS=Homo sapiens GN=SEMA3D PE=2 SV=2
Length = 777
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRT 123
SG KCP+DP ++ ++ LYSGT ++F DT R+
Sbjct: 178 SGRLKCPFDPQQPFASVMTDE-------YLYSGTASDFLGKDTAFTRS 218
>sp|Q90663|SEM3D_CHICK Semaphorin-3D OS=Gallus gallus GN=SEMA3D PE=2 SV=1
Length = 761
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 76 SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRT 123
SG KCP+DP ++ ++ LY+GT ++F DT + R+
Sbjct: 166 SGRLKCPFDPQQPFASVMADE-------YLYAGTASDFLGKDTALTRS 206
>sp|Q2SA01|SECA_HAHCH Protein translocase subunit SecA OS=Hahella chejuensis (strain KCTC
2396) GN=secA PE=3 SV=1
Length = 908
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 7 LPPLSFENQHNFPAVPPQLATFFGVKKVVEEEEEEEKK 44
+PP S Q N P + QL + FGV V++ +E+K+
Sbjct: 691 IPPQSIAEQWNVPGLEKQLESDFGVDLPVQQWLDEDKR 728
>sp|Q92854|SEM4D_HUMAN Semaphorin-4D OS=Homo sapiens GN=SEMA4D PE=1 SV=1
Length = 862
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 65 LGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFR 122
LG++E G +CP+DP + T++ V+ LYSGT+ F ++ +I R
Sbjct: 146 LGKNE------DGKGRCPFDPAHSYTSVMVDG-------ELYSGTSYNFLGSEPIISR 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,499,486
Number of Sequences: 539616
Number of extensions: 3093721
Number of successful extensions: 11780
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11724
Number of HSP's gapped (non-prelim): 59
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)