Query psy12771
Match_columns 160
No_of_seqs 130 out of 312
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:17:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oky_B Putative uncharacterize 100.0 1.2E-33 4.2E-38 259.0 7.4 110 35-159 80-213 (565)
2 3nvq_A Semaphorin-7A; beta-pro 99.9 2.7E-26 9.1E-31 211.3 4.3 103 37-159 66-186 (590)
3 1q47_A Semaphorin 3A; beta pro 99.9 1.1E-24 3.9E-29 195.7 6.8 97 48-159 87-207 (495)
4 4gz8_A Semaphorin-3A; multi-do 99.9 6.3E-24 2.1E-28 197.5 7.5 131 2-159 61-215 (667)
5 1olz_A Semaphorin 4D; developm 99.9 8.2E-23 2.8E-27 189.1 6.1 95 48-159 85-196 (663)
6 3nvx_A Protein A39; beta-prope 99.8 1.1E-18 3.9E-23 154.3 8.0 93 47-158 43-150 (383)
7 3ol2_B Plexin-B1; beta-propell 99.4 5.6E-14 1.9E-18 127.9 2.1 142 1-158 39-207 (528)
8 3al9_A Plexin-A2; beta-propell 98.8 2.2E-09 7.6E-14 97.3 5.2 105 51-158 81-218 (539)
9 2uzx_B Hepatocyte growth facto 98.7 1.6E-08 5.6E-13 94.4 6.7 111 38-158 79-233 (727)
10 3nvn_B Plexin-C1; beta-propell 97.7 3.4E-05 1.2E-09 70.1 5.5 97 48-157 66-204 (476)
11 4fww_A Macrophage-stimulating 97.6 3.9E-05 1.3E-09 68.3 4.2 47 74-124 129-175 (527)
12 3oky_A Plexin-A2; transmembran 73.8 5.3 0.00018 37.3 6.1 48 75-124 119-172 (681)
13 2vy4_A U11/U12 small nuclear r 60.9 3.2 0.00011 25.0 1.2 12 77-88 4-15 (37)
No 1
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=99.98 E-value=1.2e-33 Score=259.03 Aligned_cols=110 Identities=29% Similarity=0.382 Sum_probs=93.5
Q ss_pred cchhhHHHHhhhc-------ccccceEEeeecCcccccCCC-----------------ccCCccCcccccCCCCCCCCCe
Q psy12771 35 VEEEEEEEKKKER-------GFTKVFFWKILENNLTHLGRH-----------------EHVPGIGSGIAKCPYDPNDNST 90 (160)
Q Consensus 35 i~~~~~~~kk~~~-------~~~~nfirvL~~~N~ThL~~~-----------------e~v~~~esG~gkCPydP~~nsT 90 (160)
|+|+++++++++| .+|.||||||+++|.|||+.| +.+.+.++|+|||||||.+++|
T Consensus 80 i~W~~~~~~~~~C~~kGK~~~eC~NyIrvL~~~n~~~L~~CGTnAf~P~C~~~~~~~l~~~~~~~~G~~~CPydP~~~~t 159 (565)
T 3oky_B 80 LTWKSRQADVDTCRMKGKHKDECHNFIKVLLKKNDDTLFVCGTNAFNPSCRNYRVDTLETFGDEFSGMARCPYDAKHANI 159 (565)
T ss_dssp EECCCCHHHHHHHHHTTCCTTTSSCBEEEEEEEETTEEEEEECTTTSCEEEEEETTTCCBCSCCEECTTTSCSSTTSCCE
T ss_pred EEEeCCHHHhhhhhhcCCChHHcCceEEEEeecCCCEEEEeccCCCCcceEEEecccccccccccCCceeCCCCCCCCce
Confidence 4444444444443 588999999999999999622 2245678999999999999999
Q ss_pred eEEecCCCCCCCCccceeecccccCCCceEeecccccccCCCCccccceeccCccCCCCCCCeeEEEec
Q psy12771 91 AIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDSFKSLIAKII 159 (160)
Q Consensus 91 al~vdgg~p~~~~eLYSgT~tDF~G~dpvI~Rs~l~~~~~G~~~~~~LRTe~~dskWLneP~FV~S~~I 159 (160)
||+++| +|||||++||+|+|++|||++ |++ +.|||+++|++|||||+||+|+.+
T Consensus 160 al~~~g-------~LYsgt~~dF~g~d~~I~Rs~------g~~--~~lRT~~~~s~wLneP~FV~a~~~ 213 (565)
T 3oky_B 160 ALFADG-------KLYSATVTDFLAIDAVIYRSL------GDS--PTLRTVKHDSKWLKEPYFVQAVDY 213 (565)
T ss_dssp EEEETT-------EEEEEEESSTTCCCEEEEEEC------TTS--CCEECCTTCTTTCSSCEEEEEEEE
T ss_pred EEEECC-------EEEEEEecccCCCCceEEecC------CCC--CceeeeccchhhhcCCceeEEEee
Confidence 999997 999999999999999999998 765 679999999999999999999875
No 2
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=99.92 E-value=2.7e-26 Score=211.32 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=85.9
Q ss_pred hhhHHHHhhhc---ccccceEEeeecCcccccCCC---------c-----cCCccCcccccCCCCCCCCCeeEEecCCCC
Q psy12771 37 EEEEEEKKKER---GFTKVFFWKILENNLTHLGRH---------E-----HVPGIGSGIAKCPYDPNDNSTAIWVEKGNP 99 (160)
Q Consensus 37 ~~~~~~kk~~~---~~~~nfirvL~~~N~ThL~~~---------e-----~v~~~esG~gkCPydP~~nsTal~vdgg~p 99 (160)
|...+++|++| .+|.||||||+++|.| |+.| . .+...++|+|||||||++++|+|++||
T Consensus 66 ~~~~~~~~~~C~~k~eC~NyIrvl~~~~~~-l~~CGT~Af~P~C~~~~~~~~~~~~~g~g~cP~dP~~~~t~~~~~g--- 141 (590)
T 3nvq_A 66 TVNIGSTKGSCLDKRDCENYITLLERRSEG-LLACGTNARHPSCWNLVNGTVVPLGEMRGYAPFSPDENSLVLFEGD--- 141 (590)
T ss_dssp EEECCSCSSCCSSCSSCCCBEEEEEEETTE-EEEEECTTTCCEEEEESSSCEEEEEECTTSSCSSTTSCCCEEEETT---
T ss_pred ecCCHHHhhhhhccccccceEEEeeecCCc-EEEeecCCCCCCeeEEeeeeccccccccccccCCCCCCceEEEecC---
Confidence 44444566665 6899999999999998 7622 1 123568999999999999999999998
Q ss_pred CCCCccceeec-ccccCCCceEeecccccccCCCCccccceeccCccCCCCCCCeeEEEec
Q psy12771 100 GNLPALYSGTN-AEFTKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDSFKSLIAKII 159 (160)
Q Consensus 100 ~~~~eLYSgT~-tDF~G~dpvI~Rs~l~~~~~G~~~~~~LRTe~~dskWLneP~FV~S~~I 159 (160)
+|||||+ .||+|++|+|+|++ |. ..|||+ ++|||||+||+|+.|
T Consensus 142 ----~LYs~t~~~~f~g~~p~i~R~~------g~---~~lrt~---~~wL~eP~FV~s~~i 186 (590)
T 3nvq_A 142 ----EVYSTIRKQEYNGKIPRFRRIR------GE---SELYTS---DTVMQNPQFIKATIV 186 (590)
T ss_dssp ----EEEECSCSSTTCCSCCCCEEEE------SS---SCEECC---TTSCSSCEEEEEEEE
T ss_pred ----ceeeeeeeccccCCCceeEEcC------CC---Cccccc---cchhcCCceeEEEec
Confidence 9999995 79999999999998 65 369998 589999999999876
No 3
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=99.90 E-value=1.1e-24 Score=195.69 Aligned_cols=97 Identities=33% Similarity=0.473 Sum_probs=84.7
Q ss_pred ccccceEEeeecCcccccCCCc-------------------cC-----CccCcccccCCCCCCCCCeeEEecCCCCCCCC
Q psy12771 48 GFTKVFFWKILENNLTHLGRHE-------------------HV-----PGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLP 103 (160)
Q Consensus 48 ~~~~nfirvL~~~N~ThL~~~e-------------------~v-----~~~esG~gkCPydP~~nsTal~vdgg~p~~~~ 103 (160)
..|.||||+|+++|.+||+.|. .+ .+.++|+++|||||.++++++++++
T Consensus 87 ~~C~N~ikvL~~~~~~~L~~CGT~a~~p~C~~~~l~~~~~~~~~~l~~~~~~~g~~~cp~dp~~~~~~l~~~~------- 159 (495)
T 1q47_A 87 KECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDG------- 159 (495)
T ss_dssp TTSSCBEEEEEECSSSEEEEEECCSSSCEEEEEECCSCTTSCCCEEEEEEEEECTTTSCSSTTSCCEEEEETT-------
T ss_pred ccCcceEEEEEecCCCeEEEeecCCCCceEEEEecCcccccceeeccccccccCceeCCCCCCcCeeEEEeCC-------
Confidence 5689999999999999996321 11 1345899999999999999999986
Q ss_pred ccceeecccccCCCceEeecccccccCCCCccccceeccCccCCCCCCCeeEEEec
Q psy12771 104 ALYSGTNAEFTKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDSFKSLIAKII 159 (160)
Q Consensus 104 eLYSgT~tDF~G~dpvI~Rs~l~~~~~G~~~~~~LRTe~~dskWLneP~FV~S~~I 159 (160)
+||+||..||.|.+++|+|++ |.+ ..|||+++|++|||+|+||+|+.|
T Consensus 160 ~LY~gt~~d~~g~~~~i~rsl------~~~--~~lrT~~~d~~~l~~p~FV~s~~i 207 (495)
T 1q47_A 160 ELYSGTAADFMGRDFAIFRTL------GHH--HPIRTEQHDSRWLNDPRFISAHLI 207 (495)
T ss_dssp EEEEEEECSTTSCCEEEEEEE------SSS--CCEECCSSCTTTCSSCEEEEEEEE
T ss_pred eEEEEEeccCCCCCcceeeec------Ccc--ccccccccCcccccCcceEEEEEe
Confidence 899999999999999999997 654 789999999999999999999875
No 4
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=99.89 E-value=6.3e-24 Score=197.49 Aligned_cols=131 Identities=28% Similarity=0.344 Sum_probs=100.7
Q ss_pred cccCCCCCCCccccccCCCCCccchhhcccccccchhhHHHHhhhcccccceEEeeecCcccccCCCcc-----------
Q psy12771 2 YSFLGLPPLSFENQHNFPAVPPQLATFFGVKKVVEEEEEEEKKKERGFTKVFFWKILENNLTHLGRHEH----------- 70 (160)
Q Consensus 2 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~kk~~~~~~~nfirvL~~~N~ThL~~~e~----------- 70 (160)
|.+. +..++..+.+.||+.+..+..| ..+-|.....|.||||+|+.+|.+||+.|..
T Consensus 61 y~Ls-~~~l~~~~~i~w~~~~~d~~~C-----------~~kGk~~~~eC~NyikvL~~~~~~~LivCGTnafqp~C~~~~ 128 (667)
T 4gz8_A 61 FSFN-LVNIKDFQKIVWPVSYTRRDEC-----------KWAGKDILKECANFIKVLEAYNQTHLYACGTGAFHPICTYIE 128 (667)
T ss_dssp EEEE-TTCTTSEEEEECCCCHHHHHHH-----------HHTTCCTTTTSSCBEEEEEEEETTEEEEEECCSSSCEEEEEE
T ss_pred EEEc-hhhcccceEEecCCChhhHhhc-----------ccCCCCccccCCCeEEEEEECCCCeEEECCCCCCCceEEEEE
Confidence 3443 4455555666666655555333 2222222346889999999999999963210
Q ss_pred -------------CCccCcccccCCCCCCCCCeeEEecCCCCCCCCccceeecccccCCCceEeecccccccCCCCcccc
Q psy12771 71 -------------VPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEYTF 137 (160)
Q Consensus 71 -------------v~~~esG~gkCPydP~~nsTal~vdgg~p~~~~eLYSgT~tDF~G~dpvI~Rs~l~~~~~G~~~~~~ 137 (160)
....++|+++|||||.+++|+++++| +||+||++||+|.+++|+|++ +.+ ..
T Consensus 129 l~~~~~~~~~~~~~~~~~sg~g~cP~dP~~~~tal~~dg-------~LYsGT~~df~g~d~~I~Rsl------~~~--~~ 193 (667)
T 4gz8_A 129 VGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDG-------ELYSGTAADFMGRDFAIFRTL------GHH--HP 193 (667)
T ss_dssp CCSSSSCCCCEECCSCCEECTTTSCSSSSSCCEEEEETT-------EEEEEEECSTTSCCEEEEEES------CSS--CC
T ss_pred CCCccccceeecccccccCcceECCCCCccceEEEeecC-------eEEEEeccccCCCCceEEecC------CCC--Cc
Confidence 13457899999999999999999998 899999999999999999997 554 68
Q ss_pred ceeccCccCCCCCCCeeEEEec
Q psy12771 138 KRTIKYDSKWLDSFKSLIAKII 159 (160)
Q Consensus 138 LRTe~~dskWLneP~FV~S~~I 159 (160)
+||+.++++||+||+||+++.|
T Consensus 194 lrT~~~~s~~l~~P~FV~s~~i 215 (667)
T 4gz8_A 194 IRTEQHDSRWLNDPRFISAHLI 215 (667)
T ss_dssp EECCSSCTTTCSSCEEEEEEEE
T ss_pred ceeeecccccccCCcceeeeee
Confidence 9999999999999999999876
No 5
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=99.87 E-value=8.2e-23 Score=189.13 Aligned_cols=95 Identities=25% Similarity=0.397 Sum_probs=82.1
Q ss_pred ccccceEEeeecCcccccCCCc-----------------cCCccCcccccCCCCCCCCCeeEEecCCCCCCCCccceeec
Q psy12771 48 GFTKVFFWKILENNLTHLGRHE-----------------HVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTN 110 (160)
Q Consensus 48 ~~~~nfirvL~~~N~ThL~~~e-----------------~v~~~esG~gkCPydP~~nsTal~vdgg~p~~~~eLYSgT~ 110 (160)
..|.|||++|+++|.+||+.|. .+.+.++|+++|||||.+++++++++| +||+||.
T Consensus 85 ~dc~N~i~vL~~~~~~~L~~CGTna~qp~C~~~~l~~~~~~~~~~~g~~~cp~dp~~~~~~vi~~g-------~Ly~gt~ 157 (663)
T 1olz_A 85 TECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDG-------ELYSGTS 157 (663)
T ss_dssp TTSSCBEEEEEECSSSEEEEEECTTTSCEEEEEETTTTEECCCCEECTTTSCSSTTSCEEEEEETT-------EEEEEEE
T ss_pred cccceeEEEEEEcCCCeEEEeeccCCCcEEEEeecCccccccccccCCccCCCCCCCCeeEEEeCC-------eEEEEEe
Confidence 4678999999999999986332 134578999999999999999999987 8999999
Q ss_pred ccccCCCceEeecccccccCCCCccccceeccCccCCCCCCCeeEEEec
Q psy12771 111 AEFTKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDSFKSLIAKII 159 (160)
Q Consensus 111 tDF~G~dpvI~Rs~l~~~~~G~~~~~~LRTe~~dskWLneP~FV~S~~I 159 (160)
.||.|.+|+|+|++ .. ..|||| +|++|||||+||+|+.|
T Consensus 158 ~~~~g~~p~i~Rs~------~~---~~lrTe-~~~~~L~~p~FV~s~~i 196 (663)
T 1olz_A 158 YNFLGSEPIISRNS------SH---SPLRTE-YAIPWLNEPSFVFADVI 196 (663)
T ss_dssp SSTTSCSEEEEEEC------SS---CCBCCC-SSTTTCSSCEEEEEEEE
T ss_pred ccccCCCceEEecc------cc---cccccc-chhhhccCCceeEeeee
Confidence 99999999999987 22 469998 58999999999999865
No 6
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A*
Probab=99.75 E-value=1.1e-18 Score=154.26 Aligned_cols=93 Identities=11% Similarity=-0.089 Sum_probs=73.0
Q ss_pred cccccceEEeeecCcc--cccCCCc-------------cCCccCcccccCCCCCCCCCeeEEecCCCCCCCCccceeecc
Q psy12771 47 RGFTKVFFWKILENNL--THLGRHE-------------HVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNA 111 (160)
Q Consensus 47 ~~~~~nfirvL~~~N~--ThL~~~e-------------~v~~~esG~gkCPydP~~nsTal~vdgg~p~~~~eLYSgT~t 111 (160)
...|.||||||+..|. +||+.|. .....++|+|+|||||.++++.+ .+| +|||||++
T Consensus 43 ~~eC~NyIrVL~~~~~~~~~L~vCGTNAf~P~C~~~~~~~~~~~~g~G~~Pf~ps~~s~~~-~~g-------~LYsat~~ 114 (383)
T 3nvx_A 43 GLTNNNYITTSIKVEDADKDTLVCGTNNGNPKCWKIDGSDDPKHRGRGYAPYQNSKVTIIS-YNE-------CVLSDINI 114 (383)
T ss_dssp ECCSSCBEEEEEEC----CCEEEEECGGGSCEEEETTSCBCTTCCCBTTBCSSSCCCCEEE-ETT-------EEEECSCS
T ss_pred hhHhcceEEEEEEccCCCCeEEEecCCCCCCceEeecCcccccccccccCCCCCCcceEEe-cCC-------eEEEEEcc
Confidence 3689999999999775 8885221 11345789999999999986644 455 89999999
Q ss_pred cccCCCceEeecccccccCCCCccccceeccCccCCCCCCCeeEEEe
Q psy12771 112 EFTKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLDSFKSLIAKI 158 (160)
Q Consensus 112 DF~G~dpvI~Rs~l~~~~~G~~~~~~LRTe~~dskWLneP~FV~S~~ 158 (160)
| .|++|+|+|++ |.+ .+.|||+ ++|||||+||+|+.
T Consensus 115 d-~G~~p~i~R~~------g~~-~~~LrT~---d~wLn~P~FV~s~~ 150 (383)
T 3nvx_A 115 S-KEGIKRWRRFD------GPC-GYDLYTA---DNVIPKDGLRGAFV 150 (383)
T ss_dssp S-TTCCCCCEECS------BTT-BSCEECC---TTSSCTTCCSEEEE
T ss_pred c-CCCCceEEecC------CCC-Ccccccc---ccccCCcceeEEEc
Confidence 9 79999999997 652 1579998 57999999999974
No 7
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=99.39 E-value=5.6e-14 Score=127.87 Aligned_cols=142 Identities=15% Similarity=0.021 Sum_probs=94.8
Q ss_pred CcccCCCCCCCccccccCCCCCccchhhcccccccchhhHHHHhhhcccccceEEeeecCcccccCCCcc----------
Q psy12771 1 MYSFLGLPPLSFENQHNFPAVPPQLATFFGVKKVVEEEEEEEKKKERGFTKVFFWKILENNLTHLGRHEH---------- 70 (160)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~kk~~~~~~~nfirvL~~~N~ThL~~~e~---------- 70 (160)
||++. +++..+.++.|-++.+.+ .|. ......+|.. + +.+.||||+|+ .|.+||+.|..
T Consensus 39 ly~Ls--~~L~~~~~~~tGP~~d~~-~C~--p~~~~~~C~~-~----~~tdN~nkvL~-~~~~~L~~CGSafqg~C~~~~ 107 (528)
T 3ol2_B 39 LFQLS--PGLQLEATVSTGPVLDSR-DCL--PPVMPDECPQ-A----QPTNNPNQLLL-VSPGALVVCGSVHQGVCEQRR 107 (528)
T ss_dssp EEEEC--TTCCEEEEEECCCEEECT-TSC--SSCCTTTCTT-C----EEECCCEEEEE-ECSSEEEEEESSGGGCEEEEE
T ss_pred EEEcC--CCcccceEeccCCCCCCc-CCC--CCcccccccc-c----CcccceEEEEE-EcCCeEEEcccCcCceeEEEe
Confidence 35554 477777777777765554 444 2112233322 1 24689999999 57799974321
Q ss_pred ------CCccCcccccCCC----CCCCCCeeEEecCCCCCCCCccceeecccccC---CCceEe-eccccccc-CCC--C
Q psy12771 71 ------VPGIGSGIAKCPY----DPNDNSTAIWVEKGNPGNLPALYSGTNAEFTK---ADTVIF-RTDLLNFT-TGK--K 133 (160)
Q Consensus 71 ------v~~~esG~gkCPy----dP~~nsTal~vdgg~p~~~~eLYSgT~tDF~G---~dpvI~-Rs~l~~~~-~G~--~ 133 (160)
+...++|+++||| ||.++.+++++++ |.+..+||+||..||.| .+|+|+ |++..... .+- .
T Consensus 108 l~~~~~~~~~~~~~~~~~~va~~dp~~s~v~vi~~~--~~~~~~LyvGt~~d~~~~~~~~p~Is~R~L~~~~~~~~F~~~ 185 (528)
T 3ol2_B 108 LGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQG--LAGEPLLFVGRGYTSRGVGGGIPPITTRALWPPDPQAAFSYE 185 (528)
T ss_dssp TTEEEEEEECCSSCCGGGCCSCSSTTSCEEEEEEEC--TTSCEEEEEEECCCC---CCCCCSEEEEESSCSSGGGTTCEE
T ss_pred cCCcceeeeeccCCCcCCcccCCCCCCCeEEEEeeC--CCCceEEEEEEeccCCCccCCCcceEEeecCCcccccccccc
Confidence 1234699999999 9999999999985 23447999999999997 799999 88721000 000 0
Q ss_pred ccccceeccCccCCCCCCCeeEEEe
Q psy12771 134 EYTFKRTIKYDSKWLDSFKSLIAKI 158 (160)
Q Consensus 134 ~~~~LRTe~~dskWLneP~FV~S~~ 158 (160)
....|||+ ++++| +|+||+||.
T Consensus 186 ~~~~l~t~-~~~~~--~~~FV~aF~ 207 (528)
T 3ol2_B 186 ETAKLAVG-RLSEY--SHHFVSAFA 207 (528)
T ss_dssp EEEECCCS-CHHHH--CCEEEEEEE
T ss_pred ccceeEec-ccccC--CCcEEEEEe
Confidence 01469997 67889 999999985
No 8
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=98.83 E-value=2.2e-09 Score=97.31 Aligned_cols=105 Identities=8% Similarity=-0.020 Sum_probs=68.4
Q ss_pred cceEEeeec-CcccccCCCcc-------------C---Cc--cCcccccCCCCCCCCCeeEEecCCCCCCCCccceeecc
Q psy12771 51 KVFFWKILE-NNLTHLGRHEH-------------V---PG--IGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNA 111 (160)
Q Consensus 51 ~nfirvL~~-~N~ThL~~~e~-------------v---~~--~esG~gkCPydP~~nsTal~vdgg~p~~~~eLYSgT~t 111 (160)
.|++++|.. .|.+||+.|.. + .. ...|.+.||+||..+.+++++.++ ...++||+||..
T Consensus 81 dN~nkvLl~~~~~~~L~~CGS~~qg~C~~~~l~~~~~~~~~~~~~~~~v~~~~p~~stv~vv~~~~--~~~~~Lyvgt~~ 158 (539)
T 3al9_A 81 NNVNKLLIIDYSENRLLACGSLYQGVCKLLRLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSE--GEDGKLFIGTAV 158 (539)
T ss_dssp CCCEEEEEEEGGGTEEEEEESSTTTCEEEEETTTCCEEECCCSSGGGCCCCCCCSSSEEEEEECCT--TSCEEEEEEECC
T ss_pred CceEEEEEEecCCCeEEEeecCCCCCceeEecccccccccccccCcccccCCCCCCCeEEEEeecC--CCCccEEEEEec
Confidence 688887776 78888863211 1 11 123456899999999999999432 122489999999
Q ss_pred cccCC-CceE-eecccccccCCCCccccceeccCccCCCC------------CCCeeEEEe
Q psy12771 112 EFTKA-DTVI-FRTDLLNFTTGKKEYTFKRTIKYDSKWLD------------SFKSLIAKI 158 (160)
Q Consensus 112 DF~G~-dpvI-~Rs~l~~~~~G~~~~~~LRTe~~dskWLn------------eP~FV~S~~ 158 (160)
||.+. .|+| .|++... ..|......+++..++++||+ +++||+||.
T Consensus 159 ~~~~~~~p~Is~R~L~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~p~~~~~fV~aF~ 218 (539)
T 3al9_A 159 DGKQDYFPTLSSRKLPRD-PESSAMLDYELHSDFVSSLIKIPSDTLALVSHFDIFYIYGFA 218 (539)
T ss_dssp TTCTTTCCSEEEEEECSS-TTCTTTTCBSSBCSSCBSEECCCHHHHHHCTTCCCEEEEEEE
T ss_pred cCCCCCCcceEEeccCCC-ccccchheeecccccccccccccccccccCCCCCcceEEEEe
Confidence 97653 4677 6887311 111111123456778888876 688899974
No 9
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=98.70 E-value=1.6e-08 Score=94.44 Aligned_cols=111 Identities=11% Similarity=-0.003 Sum_probs=62.9
Q ss_pred hhHHHHhhhc-cccc--ceEEeeecCcccccCCCcc----------C---------------C-ccCcccccCCCCCCCC
Q psy12771 38 EEEEEKKKER-GFTK--VFFWKILENNLTHLGRHEH----------V---------------P-GIGSGIAKCPYDPNDN 88 (160)
Q Consensus 38 ~~~~~kk~~~-~~~~--nfirvL~~~N~ThL~~~e~----------v---------------~-~~esG~gkCPydP~~n 88 (160)
+|..+.|.+. ..|. |++++|+++|.+||+.|.. + . ....+.++|| ||...
T Consensus 79 ~C~~~~k~~~~~~~~n~nkvLl~~~~~~~~L~~CGTafqg~C~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~cp-d~~~s 157 (727)
T 2uzx_B 79 DCSSKANLSGGVWKDNINMALVVDTYYDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCP-DCVVS 157 (727)
T ss_dssp -----------CCCCCCCCEEEEECSSSSEEEEECSSSSSCEEEEECCSCC-----CEECCCCC----CCSCCS-SCCCC
T ss_pred hccccCCCcccCcCCceEEEEEEcccCCCEEEEEeCCCCCcceeEecCcccccccccccceeeecccCCCCCCC-Ccccc
Confidence 5555544421 2345 5557777889999963211 0 0 0124777999 89988
Q ss_pred CeeEEe---cCCCCCCCCccceeeccccc-----CCCceEeecccccccCCCCcc-----ccceeccCccCCC--CCCCe
Q psy12771 89 STAIWV---EKGNPGNLPALYSGTNAEFT-----KADTVIFRTDLLNFTTGKKEY-----TFKRTIKYDSKWL--DSFKS 153 (160)
Q Consensus 89 sTal~v---dgg~p~~~~eLYSgT~tDF~-----G~dpvI~Rs~l~~~~~G~~~~-----~~LRTe~~dskWL--neP~F 153 (160)
.+++++ +++ .-.+||+||..|+. |.+++|+|++ +.... ....+...+.+|+ ++|+|
T Consensus 158 ~~g~~v~~~~~~---~~~~Lyvgt~~~~~~~~~~~~~~is~R~L------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 228 (727)
T 2uzx_B 158 ALGAKVLSSVKD---RFINFFVGNTINSSYFPDHPLHSISVRRL------KETKDGFMFLTDQSYIDVLPEFRDSYPIKY 228 (727)
T ss_dssp TTCEEEEEEEET---TEEEEEEEECCCSCC----CCCSEEEEEE------CTTCSCEECCSGGGEECCCGGGTTTSCEEE
T ss_pred cceeeEEccCCC---cceEEEEEEeeccccCCCCCCcceEEccC------CCCcccceeecccceEEeccccccccCCCc
Confidence 877655 432 01269999999853 2358999998 32210 0123344567888 79999
Q ss_pred eEEEe
Q psy12771 154 LIAKI 158 (160)
Q Consensus 154 V~S~~ 158 (160)
|++|.
T Consensus 229 V~~f~ 233 (727)
T 2uzx_B 229 VHAFE 233 (727)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 99975
No 10
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=97.71 E-value=3.4e-05 Score=70.08 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=72.5
Q ss_pred ccccceEEeeecCcc-----cccC--------------CCccC----CccCcccccCCCCCCCCCeeEEecCCCCCCCCc
Q psy12771 48 GFTKVFFWKILENNL-----THLG--------------RHEHV----PGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPA 104 (160)
Q Consensus 48 ~~~~nfirvL~~~N~-----ThL~--------------~~e~v----~~~esG~gkCPydP~~nsTal~vdgg~p~~~~e 104 (160)
.-|.||+++|..+-. .-|. +.+.+ .+.+.+...| +|..+.+++++.++ | .+.
T Consensus 66 ~~~~n~nKlLl~~~~~~~~~~~Li~cGs~~q~g~C~~r~l~~l~~~~~~~~~~v~~~--~p~~st~~~v~~~~-~--~~~ 140 (476)
T 3nvn_B 66 RPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRNSLRNGTEVVSC--HPQGSTAGVVYRAG-R--NNR 140 (476)
T ss_dssp SCCCCSEEEEEEESCSSTTSCCEEEEEESHHHHCEEEEESSCTTSCCSCEESSSSCC--STTSCEEEEEEEET-T--TTE
T ss_pred CCCCCeeEEEEecccccccCCeEEEEeeccCCceeEEEEcCCcceecccCCCceeec--CCCCceEEEEeccC-C--Cce
Confidence 356799999997442 3332 12221 2457788899 99999999998753 2 238
Q ss_pred cceeecccc---------------cCCCceEeecccccccCCCCccccceeccCccCCCC---CC-CeeEEE
Q psy12771 105 LYSGTNAEF---------------TKADTVIFRTDLLNFTTGKKEYTFKRTIKYDSKWLD---SF-KSLIAK 157 (160)
Q Consensus 105 LYSgT~tDF---------------~G~dpvI~Rs~l~~~~~G~~~~~~LRTe~~dskWLn---eP-~FV~S~ 157 (160)
||.|+.+|| .+.+|+|.|+. ... ..|+|+++++.||+ ++ +||.||
T Consensus 141 lfvg~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~------~~~--r~l~~~~~~~~~~~~~~~~~~fV~af 204 (476)
T 3nvn_B 141 WYLAVAATYVLPEPETASRCNPAASDHDTAIALKD------TEG--RSLATQELGRLKLCEGAGSLHFVDAF 204 (476)
T ss_dssp EEEEEEECCCCCCCCTTTCCCCCGGGTTEEEEEEE------SSS--GGGCCCTTSEEEBCTTSCCEEECCCE
T ss_pred eEEEecccccccccccccccCCCccccccceeecc------Ccc--cccchhhhcceeeccCCCCceeeeeh
Confidence 999999999 56689999986 221 46999999999999 88 999993
No 11
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=97.60 E-value=3.9e-05 Score=68.33 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=32.8
Q ss_pred cCcccccCCCCCCCCCeeEEecCCCCCCCCccceeecccccCCCceEeecc
Q psy12771 74 IGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTD 124 (160)
Q Consensus 74 ~esG~gkCPydP~~nsTal~vdgg~p~~~~eLYSgT~tDF~G~dpvI~Rs~ 124 (160)
.+++.+.|+.+|....+++...+ + .+.||+||..||.|.++++.|+.
T Consensus 129 ~~~~~~~~~~~p~~~~~~~~~~g-~---~~~Lyvgt~~~~~~~~~~~~rsi 175 (527)
T 4fww_A 129 RPDDCPDCVASPLGTRVTVVEQG-Q---ASYFYVASSLDAAVAASFSPRSV 175 (527)
T ss_dssp BTTBCTTCCCCTTCEEEEEEEET-T---EEEEEEEECCCHHHHSSSCCCSE
T ss_pred CCCCCceeecCCCCCceEEEecC-C---CceEEEeeecccCCCCCcccccc
Confidence 34566777788765555544433 1 23699999999999998887764
No 12
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=73.84 E-value=5.3 Score=37.34 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=31.0
Q ss_pred CcccccCCCCCCCCC---e-eEEecCCCCCCCCccceeecccccC-CC-ceEeecc
Q psy12771 75 GSGIAKCPYDPNDNS---T-AIWVEKGNPGNLPALYSGTNAEFTK-AD-TVIFRTD 124 (160)
Q Consensus 75 esG~gkCPydP~~ns---T-al~vdgg~p~~~~eLYSgT~tDF~G-~d-pvI~Rs~ 124 (160)
+++.++|.|.+..+. | +|++++ |++...||+|+..|..+ .- ++-.|.+
T Consensus 119 ~~~~~~~~~va~~~~~~t~v~vv~~~--~~~~~~l~Vg~~~~~~~~~~p~ISsR~L 172 (681)
T 3oky_A 119 EPSHKKEHYLSSVNKTGTMYGVIVRS--EGEDGKLFIGTAVDGKQDYFPTLSSRKL 172 (681)
T ss_dssp CCCSSGGGCCCCCCCSSSEEEEEECC--TTCCCEEEEEECCTTCTTTSCSEEEEEC
T ss_pred cCCCCccccccCCCCCCCEEEEEecC--CCCceeEEEEeecCCCCCCCceeEEeec
Confidence 567888999987664 2 244543 34456899999987764 22 4445665
No 13
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=60.87 E-value=3.2 Score=24.96 Aligned_cols=12 Identities=42% Similarity=1.046 Sum_probs=9.3
Q ss_pred ccccCCCCCCCC
Q psy12771 77 GIAKCPYDPNDN 88 (160)
Q Consensus 77 G~gkCPydP~~n 88 (160)
-...|||||.+.
T Consensus 4 ~~v~CPyd~~H~ 15 (37)
T 2vy4_A 4 EVVICPYDSNHH 15 (37)
T ss_dssp CCEECTTTSSCE
T ss_pred eEEECCCCCCeE
Confidence 356799999874
Done!