RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12771
         (160 letters)



>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 478

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 17/86 (19%)

Query: 64  HLGRHEHVPGIGSGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRT 123
           +L   + +     G  +CP+DP  + T++ V+         LYSGT+  F  ++ +I R 
Sbjct: 116 NLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVD-------GELYSGTSYNFLGSEPIISRN 168

Query: 124 DLLNFTTGKKEYTFKRTIKYDSKWLD 149
              +              +Y   WL+
Sbjct: 169 SSHS----------PLRTEYAIPWLN 184


>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 495

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 76  SGIAKCPYDPNDNSTAIWVEKGNPGNLPALYSGTNAEFTKADTVIFRTDLLNFTTGKKEY 135
           +G  K PYDP   + ++ ++         LYSGT A+F   D  IFRT   +        
Sbjct: 139 NGRGKSPYDPKLLTASLLID-------GELYSGTAADFMGRDFAIFRTLGHH-------- 183

Query: 136 TFKRTIKYDSKWLD 149
              RT ++DS+WL+
Sbjct: 184 HPIRTEQHDSRWLN 197


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 6/101 (5%)

Query: 58  LENNLTHLGRHEHVPGIGSGIAKCPY--DPNDNSTAIWVEKGNPGNLPALYSGTNAEFTK 115
             +N T   + E        I +     D   ++    V           + G     + 
Sbjct: 107 FPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSY 166

Query: 116 ADTVIFRT----DLLNFTTGKKEYTFKRTIKYDSKWLDSFK 152
                  +     L     G    T +  I    ++ DS+ 
Sbjct: 167 FPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYP 207


>d1tbxa_ a.4.5.48 (A:) Hypothetical protein F93 {Sulfolobus
          virus-like particle SSV1 [TaxId: 244589]}
          Length = 94

 Score = 24.3 bits (52), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 22 PPQLATFFGVKKVVEEEEEEEKKKERGFTKVFF 54
          P   ATF+  KK + +E   ++++ERG  +++ 
Sbjct: 35 PMSTATFYDAKKFLIQEGFVKERQERGEKRLYL 67


>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
          kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 23.6 bits (51), Expect = 6.5
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 58 LENNLTHLGRHEHVPGIGSGIAK 80
            + +      + +PG+G+ IA+
Sbjct: 40 YPHKIKSGAEAKKLPGVGTKIAE 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 633,995
Number of extensions: 29124
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 11
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)