BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12776
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26630|PAX6_DANRE Paired box protein Pax-6 OS=Danio rerio GN=pax6a PE=2 SV=1
Length = 437
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 93/211 (44%), Gaps = 63/211 (29%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 114 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYEKLRML 168
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
G W GT P G P VP P D
Sbjct: 169 NG----QTGTW-------------GTRP---------GWYPGTSVPG------QPNQDG- 195
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGS-GSGSEQPKFR--------RNRTTFSPSQLDEL 247
C SDG ++ +S+ S G S++ + R RNRT+F+ Q++ L
Sbjct: 196 -----------CQQSDGGGENTNSISSNGEDSDETQMRLQLKRKLQRNRTSFTQEQIEAL 244
Query: 248 EKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
EKEF+++HYP V RERLAAK L EAR+Q
Sbjct: 245 EKEFERTHYPDVFARERLAAKIDLPEARIQV 275
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 343 VWFSNRRAKWRRHQRM 358
VWFSNRRAKWRR +++
Sbjct: 275 VWFSNRRAKWRREEKL 290
>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1
Length = 422
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 45/202 (22%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 95 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYDKLR-- 147
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
+++ Q +G+ G+ G P VP PT D
Sbjct: 148 -----------------MLNGQ-------TGSWGTRPGWYPGTSVPG------QPTQDGC 177
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHY 256
T S+G+ D+ + + K +RNRT+F+ Q++ LEKEF+++HY
Sbjct: 178 QQQEGQGENTNSISSNGEDSDEAQM---RLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 234
Query: 257 PCVSTRERLAAKTSLSEARVQF 278
P V RERLAAK L EAR+Q
Sbjct: 235 PDVFARERLAAKIDLPEARIQV 256
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 256 VWFSNRRAKWRREEK---LRNQRRQASNT 281
>sp|O73917|PAX6_ORYLA Paired box protein Pax-6 OS=Oryzias latipes GN=pax6 PE=2 SV=1
Length = 437
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 92/211 (43%), Gaps = 63/211 (29%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EG+CTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 114 PSIFAWEIRDRLLSEGICTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYDKLRML 168
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
G W GT P G P VP P D
Sbjct: 169 NG----QTGTW-------------GTRP---------GWYPGTSVPG------QPNQDG- 195
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGS-GSGSEQPKFR--------RNRTTFSPSQLDEL 247
C DG ++ +S+ S G SE+ + R RNRT+F+ Q++ L
Sbjct: 196 -----------CQQQDGAGENTNSISSNGEDSEETQMRLQLKRKLQRNRTSFTQEQIEAL 244
Query: 248 EKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
EKEF+++HYP V RERLAAK L EAR+Q
Sbjct: 245 EKEFERTHYPDVFARERLAAKIDLPEARIQV 275
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAAN 370
VWFSNRRAKWRR ++ L+++R A N
Sbjct: 275 VWFSNRRAKWRREEK---LRNQRRQANN 299
>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1
Length = 422
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 45/202 (22%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 95 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYDKLR-- 147
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
+++ Q +G+ G+ G P VP PT D
Sbjct: 148 -----------------MLNGQ-------TGSWGTRPGWYPGTSVPG------QPTQDGC 177
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHY 256
T S+G+ D+ + + K +RNRT+F+ Q++ LEKEF+++HY
Sbjct: 178 QQQEGGGENTNSISSNGEDSDEAQM---RLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 234
Query: 257 PCVSTRERLAAKTSLSEARVQF 278
P V RERLAAK L EAR+Q
Sbjct: 235 PDVFARERLAAKIDLPEARIQV 256
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 256 VWFSNRRAKWRREEK---LRNQRRQASNT 281
>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2
Length = 422
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 45/202 (22%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 95 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYDKLR-- 147
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
+++ Q +G+ G+ G P VP PT D
Sbjct: 148 -----------------MLNGQ-------TGSWGTRPGWYPGTSVPG------QPTQDGC 177
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHY 256
T S+G+ D+ + + K +RNRT+F+ Q++ LEKEF+++HY
Sbjct: 178 QQQEGGGENTNSISSNGEDSDEAQM---RLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 234
Query: 257 PCVSTRERLAAKTSLSEARVQF 278
P V RERLAAK L EAR+Q
Sbjct: 235 PDVFARERLAAKIDLPEARIQV 256
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 256 VWFSNRRAKWRREEK---LRNQRRQASNT 281
>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1
Length = 422
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 45/202 (22%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 95 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYDKLR-- 147
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
+++ Q +G+ G+ G P VP PT D
Sbjct: 148 -----------------MLNGQ-------TGSWGTRPGWYPGTSVPG------QPTQDGC 177
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHY 256
T S+G+ D+ + + K +RNRT+F+ Q++ LEKEF+++HY
Sbjct: 178 QQQEGGGENTNSISSNGEDSDEAQM---RLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 234
Query: 257 PCVSTRERLAAKTSLSEARVQF 278
P V RERLAAK L EAR+Q
Sbjct: 235 PDVFARERLAAKIDLPEARIQV 256
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 256 VWFSNRRAKWRREEK---LRNQRRQASNT 281
>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2
SV=1
Length = 416
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 89/202 (44%), Gaps = 45/202 (22%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+E+ + G+Y
Sbjct: 95 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQ-----QMGADGMYDKLRML 149
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDHV 196
G W GT P G P VP P +
Sbjct: 150 NG----QTGTW-------------GTRP---------GWYPGTSVPGQPAQDGCPQQEGG 183
Query: 197 HINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHY 256
N T S+G+ D+ + + K +RNRT+F+ Q++ LEKEF+++HY
Sbjct: 184 GEN------TNSISSNGEDSDEAQM---RLQLKRKLQRNRTSFTQEQIEALEKEFERTHY 234
Query: 257 PCVSTRERLAAKTSLSEARVQF 278
P V RERLAAK L EAR+Q
Sbjct: 235 PDVFARERLAAKIDLPEARIQV 256
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 256 VWFSNRRAKWRREEK---LRNQRRQASNT 281
>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1
Length = 422
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 90/204 (44%), Gaps = 49/204 (24%)
Query: 82 PHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPY 136
P IF +I EGVCTN PSVSSINR+LRN A+++ + G+Y
Sbjct: 95 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASDKQ-----QMGSEGMYDKLRML 149
Query: 137 ASFHWPNPGIWNPNNPPVVSNQGPGTTPSSGAAGSP--RGLMPRLFVPFGHCYSFSPTSD 194
N PG P + G P G P+ +
Sbjct: 150 -------------NGQTATWGSRPGWYPGTSVPGQPAQEGCQPQ---------------E 181
Query: 195 HVHINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKS 254
V N T S+G+ D+ + + K +RNRT+F+ Q++ LEKEF+++
Sbjct: 182 GVGEN------TNSISSNGEDSDEAQM---RLQLKRKLQRNRTSFTQEQIEALEKEFERT 232
Query: 255 HYPCVSTRERLAAKTSLSEARVQF 278
HYP V RERLAAK L EAR+Q
Sbjct: 233 HYPDVFARERLAAKIDLPEARIQV 256
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 256 VWFSNRRAKWRREEK---LRNQRRQASNT 281
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 185 HCYSFSPTSD--HVHINNEHTPITPCFVSDGDAKDDDSVGSGSGSEQPK--FRRNRTTFS 240
HC P H P P S D G S EQPK RRNRTTF+
Sbjct: 71 HCLPKGPAEPPPAEHQGRFQEPYCPGSASPELPAGDGGDGKPSDEEQPKKKHRRNRTTFT 130
Query: 241 PSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
QL ELE+ F+KSHYP V +RE LA K +L E RVQ
Sbjct: 131 TYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 343 VWFSNRRAKWRRHQRMNL 360
VWF NRRAKWRR +++ +
Sbjct: 168 VWFQNRRAKWRRQEKLEV 185
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 7/74 (9%)
Query: 212 DGDAKD-DDSV--GSGSGSEQP----KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRER 264
DGD KD +DSV +GS SE+ K RR RTTF+ QL+ELE+ F K+HYP V TRE
Sbjct: 188 DGDVKDGEDSVCLSAGSDSEEGMLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREE 247
Query: 265 LAAKTSLSEARVQF 278
LA + L+EARVQ
Sbjct: 248 LAMRLDLTEARVQV 261
>sp|Q0P031|VSX1_XENLA Visual system homeobox 1 OS=Xenopus laevis GN=vsx1 PE=2 SV=1
Length = 344
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 24/128 (18%)
Query: 155 VSNQGPGTTPSSGAAGSPRGLMPRLFVPFGHCYSFSPTSDH--VHINNEHTPITPCFVSD 212
S Q PGTT L+P +PF P DH +H +++H +SD
Sbjct: 89 ASQQPPGTT----------CLLP-THIPF-----LQPRPDHHYLHTSDKHKE----NISD 128
Query: 213 GDA--KDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTS 270
D+ D + + + S + K RR+RT F+ QLDELEK F+++HYP V RE LA KT
Sbjct: 129 DDSILGDKNDLKASSAQSKRKKRRHRTVFTAHQLDELEKSFNEAHYPDVYAREMLALKTE 188
Query: 271 LSEARVQF 278
L E R+Q
Sbjct: 189 LPEDRIQV 196
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 170 GSPRGLMPRLFVPFGHCYSFSPTSDHVHINNEHTPITPCFVSDGDAK-----DDDSVGSG 224
G P G + + P+GH S+ ++ C GD + D S S
Sbjct: 70 GEP-GKLDQRVQPYGHLPPLRDGSEQPTFHDADMFSNKCDGDLGDLRKAIESDSKSPDSA 128
Query: 225 SGSEQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
G EQPK RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +L E RVQ
Sbjct: 129 DG-EQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 183
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 343 VWFSNRRAKWRRHQRMN 359
VWF NRRAKWRR ++++
Sbjct: 183 VWFQNRRAKWRRQEKID 199
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 53/88 (60%), Gaps = 11/88 (12%)
Query: 201 EHTPITPCFVSD-GDAKDDD--SVGSGSG-----SEQP---KFRRNRTTFSPSQLDELEK 249
E+ PC+ + G+A+ SVG +G E+P K RRNRTTF+ QL ELE+
Sbjct: 94 EYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSEEEPPKKKHRRNRTTFTTYQLHELER 153
Query: 250 EFDKSHYPCVSTRERLAAKTSLSEARVQ 277
F+KSHYP V +RE LA K +L E RVQ
Sbjct: 154 AFEKSHYPDVYSREELAGKVNLPEVRVQ 181
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 343 VWFSNRRAKWRRHQRMNL 360
VWF NRRAKWRR +++ +
Sbjct: 182 VWFQNRRAKWRRQEKLEV 199
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 210 VSDGDAKDDDSVGSGSGSEQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAA 267
VSD D K + EQPK RRNRTTF+ QL ELE+ F+KSHYP V +RE LA
Sbjct: 122 VSDSDRKSPEQ----GDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAM 177
Query: 268 KTSLSEARVQF 278
K +L E RVQ
Sbjct: 178 KVNLPEVRVQV 188
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 343 VWFSNRRAKWRRHQRMN 359
VWF NRRAKWRR ++M+
Sbjct: 188 VWFQNRRAKWRRQEKMD 204
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 225 SGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
S S + K RRNRTTF+ QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 193 SESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRR 365
VWF NRRAKWR+ +R ++ R
Sbjct: 246 VWFQNRRAKWRKRERFGQMQQVR 268
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 225 SGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
S S + K RRNRTTF+ QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 195 SESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRR 365
VWF NRRAKWR+ +R ++ R
Sbjct: 248 VWFQNRRAKWRKRERFGQMQQVR 270
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 225 SGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
S S + K RRNRTTF+ QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 207 SESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRR 365
VWF NRRAKWR+ +R ++ R
Sbjct: 260 VWFQNRRAKWRKRERFGQMQQVR 282
>sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila melanogaster GN=ey PE=2 SV=3
Length = 857
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K +RNRT+F+ Q+D LEKEF+++HYP V RERLA K L EAR+Q
Sbjct: 429 KLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQV 476
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 81 VPHIFPMKI-----IEGVCTNATAPSVSSINRILRNRAAER 116
P IF +I E VCTN PSVSSINR+LRN AA++
Sbjct: 146 CPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQK 186
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 332 RIGRTDGHFKSVWFSNRRAKWRRHQRM 358
+IG + + VWFSNRRAKWRR +++
Sbjct: 466 KIGLPEARIQ-VWFSNRRAKWRREEKL 491
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 211 SDGDAKDDDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTS 270
SD + +DD+ + K RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +
Sbjct: 514 SDDEGQDDNCA-------KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN 566
Query: 271 LSEARVQF 278
L E RVQ
Sbjct: 567 LPEVRVQV 574
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 343 VWFSNRRAKWRRHQRMNLLK 362
VWF NRRAKWRR ++ L+
Sbjct: 574 VWFQNRRAKWRRQEKSESLR 593
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELEK F+++HYP + TRE LA +T L+EARVQ
Sbjct: 214 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQV 261
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELEK F+++HYP + TRE LA +T L+EARVQ
Sbjct: 216 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQV 263
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR RTTFS SQLDELE+ F+++ YP + TRE LA +T+L+EAR+Q
Sbjct: 212 KQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 259
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 89 IIEGVCTNATAPSVSSINRILRNRAA 114
I EGVC +TAPSVS+I+R++R R A
Sbjct: 130 IREGVCDRSTAPSVSAISRLVRGRDA 155
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RRNRTTFS QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 331 LRIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRR 365
LR T+ + VWF NRRAKWR+ +R ++ R
Sbjct: 188 LRTDLTEARVQ-VWFQNRRAKWRKRERYGKIQEGR 221
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 181 VPFGHCYSFSPTSDHVHINNEHTPITPCFVSD-GDAKDDDS--VGSGSG------SEQP- 230
P G S P + + E T PC+ + G+A+ VG +G E+P
Sbjct: 76 APAGGSESSPPAAPGLVPEFEAT--RPCYPKEQGEARPSPGLPVGPAAGDSKLSEEEEPP 133
Query: 231 --KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +L E RVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 182
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 343 VWFSNRRAKWRRHQRMNL 360
VWF NRRAKWRR +++ +
Sbjct: 183 VWFQNRRAKWRRQEKLEV 200
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 216 KDDDSVG---SGSGSEQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTS 270
K DS G + + EQPK RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +
Sbjct: 15 KPGDSEGTPPAAAEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVN 74
Query: 271 LSEARVQ 277
L E RVQ
Sbjct: 75 LPEVRVQ 81
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 342 SVWFSNRRAKWRRHQRMN 359
VWF NRRAKWRR ++M
Sbjct: 81 QVWFQNRRAKWRRQEKME 98
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RRNRTTFS QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 331 LRIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRR 365
LR T+ + VWF NRRAKWR+ +R ++ R
Sbjct: 188 LRTDLTEARVQ-VWFQNRRAKWRKRERYGKMQEGR 221
>sp|P47237|PAX6_CHICK Paired box protein Pax-6 (Fragment) OS=Gallus gallus GN=PAX6 PE=1
SV=1
Length = 216
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 37/48 (77%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K +RNRT+F+ Q++ LEKEF+++HYP V RERLAAK L EAR+Q
Sbjct: 9 KLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 56
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANV 371
VWFSNRRAKWRR ++ L+++R A+N
Sbjct: 56 VWFSNRRAKWRREEK---LRNQRRQASNT 81
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 203 TPITPCFVSDGDAKDDDSVGSGSGSEQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVS 260
+P P + G+AK + EQPK RRNRTTF+ QL ELE+ F+KSHYP V
Sbjct: 112 SPGLPVGPATGEAKLSEE-------EQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVY 164
Query: 261 TRERLAAKTSLSEARVQ 277
+RE LA K +L E RVQ
Sbjct: 165 SREELAGKVNLPEVRVQ 181
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 343 VWFSNRRAKWRRHQRMNL 360
VWF NRRAKWRR +++ +
Sbjct: 182 VWFQNRRAKWRRQEKLEV 199
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 7/74 (9%)
Query: 212 DGDAKD-DDSV--GSGSGSEQP----KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRER 264
D + KD +DSV +GS SE+ K RR RTTF+ QL+ELE+ F K+HYP V TRE
Sbjct: 303 DAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREE 362
Query: 265 LAAKTSLSEARVQF 278
LA + L+EARVQ
Sbjct: 363 LAMRLDLTEARVQV 376
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 7/74 (9%)
Query: 212 DGDAKD-DDSV--GSGSGSEQP----KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRER 264
D + KD +DSV +GS SE+ K RR RTTF+ QL+ELE+ F K+HYP V TRE
Sbjct: 305 DAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREE 364
Query: 265 LAAKTSLSEARVQF 278
LA + L+EARVQ
Sbjct: 365 LAMRLDLTEARVQV 378
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 7/74 (9%)
Query: 212 DGDAKD-DDSV--GSGSGSEQP----KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRER 264
D + KD +DSV +GS SE+ K RR RTTF+ QL+ELE+ F K+HYP V TRE
Sbjct: 301 DAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREE 360
Query: 265 LAAKTSLSEARVQF 278
LA + L+EARVQ
Sbjct: 361 LAMRLDLTEARVQV 374
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 35/47 (74%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K SL E RVQ
Sbjct: 86 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQ 132
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 343 VWFSNRRAKWRRHQRM 358
VWF NRRAKWRR +++
Sbjct: 133 VWFQNRRAKWRRQEKI 148
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 35/48 (72%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +L E RVQ
Sbjct: 136 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQV 183
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 343 VWFSNRRAKWRRHQRMN 359
VWF NRRAKWRR ++M+
Sbjct: 183 VWFQNRRAKWRRQEKMD 199
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 10/69 (14%)
Query: 211 SDGDAKDDDSVGSGSGSEQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAK 268
SD DD+ +QPK RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K
Sbjct: 115 SDNKLSDDE--------QQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMK 166
Query: 269 TSLSEARVQ 277
+L E RVQ
Sbjct: 167 VNLPEVRVQ 175
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANVS 372
VWF NRRAKWRR +++ + + ++ +S
Sbjct: 176 VWFQNRRAKWRRQEKLEVTSMKLQDSPMLS 205
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 211 SDGDAKDDDSVGSGSGS--EQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAK 268
S D + D +G S K RR+RTTF+ QL+ELEK F K+HYP V RE+LA +
Sbjct: 118 SMADKVELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALR 177
Query: 269 TSLSEARVQ 277
T L+EARVQ
Sbjct: 178 TELTEARVQ 186
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 331 LRIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRRANAA 369
LR T+ + VWF NRRAKWR+ +R ++ +++ A
Sbjct: 176 LRTELTEARVQ-VWFQNRRAKWRKRERYGQIQQAKSHFA 213
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 218 DDSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
D+ + + K RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +L E RVQ
Sbjct: 116 DNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANVS 372
VWF NRRAKWRR +++ + + ++ +S
Sbjct: 176 VWFQNRRAKWRRQEKLEVTSMKLQDSPMLS 205
>sp|Q8JI10|DMX1A_DANRE Diencephalon/mesencephalon homeobox protein 1-A OS=Danio rerio
GN=dmbx1a PE=2 SV=1
Length = 388
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 226 GSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
GS+ K RR+RT F+ QL+ LEK F K+HYP V RERLA T+L EARVQ
Sbjct: 65 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQV 117
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 343 VWFSNRRAKWRRHQRMNLLKSRRANAANVSGQGQVTS--DSSSPSTPSL 389
VWF NRRAK+R+ QR +L K + +VS G + + +PST +L
Sbjct: 117 VWFKNRRAKFRKKQR-SLQKEQLQKQKDVSTDGALAASDKDEAPSTLNL 164
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 214 DAKDDDSVGSGSGSEQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSL 271
D D D G S E PK RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +L
Sbjct: 87 DLPDADG-GKLSDDENPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNL 145
Query: 272 SEARVQ 277
E RVQ
Sbjct: 146 PEVRVQ 151
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 343 VWFSNRRAKWRRHQRMNL--LKSRRANAANVSGQGQVTSDSSSPSTPSL 389
VWF NRRAKWRR +++ + +K + ++ ++ G ++ S P P L
Sbjct: 152 VWFQNRRAKWRRQEKLEVSSIKLQESSMLSIPRSGPLSLGSGLPLEPWL 200
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RR+RTTF+ QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 331 LRIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRRANAA 369
LR T+ + VWF NRRAKWR+ +R ++ +++ A
Sbjct: 167 LRTELTEARVQ-VWFQNRRAKWRKRERYGQIQQAKSHFA 204
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RR+RTTF+ QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 331 LRIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRRANAA 369
LR T+ + VWF NRRAKWR+ +R ++ +++ A
Sbjct: 167 LRTELTEARVQ-VWFQNRRAKWRKRERYGQIQQAKSHFA 204
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELE+ F+++HYP + TRE LA + L+EARVQ
Sbjct: 195 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 242
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELE+ F+++HYP + TRE LA + L+EARVQ
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELE+ F+++HYP + TRE LA + L+EARVQ
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RR+RTTF+ QL+ELEK F K+HYP V RE+LA +T L+EARVQ
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 331 LRIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRRANAA 369
LR T+ + VWF NRRAKWR+ +R ++ +++ A
Sbjct: 167 LRTELTEARVQ-VWFQNRRAKWRKRERYGQIQQAKSHFA 204
>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein 1-B OS=Danio rerio
GN=dmbx1b PE=2 SV=1
Length = 369
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 226 GSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
GS+ K RR+RT F+ QL+ LEK F K+HYP V RERLA T+L EARVQ
Sbjct: 60 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQV 112
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 228 EQPK--FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
+QPK RRNRTTF+ QL ELE+ F+KSHYP V +RE LA K +L E RVQ
Sbjct: 129 DQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 181
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 343 VWFSNRRAKWRRHQRMN 359
VWF NRRAKWRR ++M+
Sbjct: 181 VWFQNRRAKWRRQEKMD 197
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELE+ F+++HYP + TRE LA + L+EARVQ
Sbjct: 219 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 266
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 89 IIEGVCTNATAPSVSSINRILRNR 112
+ +GVC T PSVSSI+RILR++
Sbjct: 138 LKDGVCDRNTVPSVSSISRILRSK 161
>sp|Q91ZK4|DMBX1_MOUSE Diencephalon/mesencephalon homeobox protein 1 OS=Mus musculus
GN=Dmbx1 PE=1 SV=1
Length = 381
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 226 GSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
GS+ K RR+RT F+ QL+ LEK F K+HYP V RERLA T+L EARVQ
Sbjct: 65 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQV 117
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 343 VWFSNRRAKWRRHQR----MNLLKSRRANAANVSGQGQVTSDSS 382
VWF NRRAK+R+ QR L K + A ++ G+G+V + +S
Sbjct: 117 VWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSH--GEGKVEAPAS 158
>sp|Q8NFW5|DMBX1_HUMAN Diencephalon/mesencephalon homeobox protein 1 OS=Homo sapiens
GN=DMBX1 PE=1 SV=1
Length = 382
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 226 GSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
GS+ K RR+RT F+ QL+ LEK F K+HYP V RERLA T+L EARVQ
Sbjct: 65 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQV 117
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 343 VWFSNRRAKWRRHQR----MNLLKSRRANAANVSGQGQV 377
VWF NRRAK+R+ QR L K + A ++ G+ +
Sbjct: 117 VWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEA 155
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQF 278
K RR+RTTF+ QL+ELE+ F+++HYP + TRE LA + L+EARVQ
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 89 IIEGVCTNATAPSVSSINRILRNR 112
+ +GVC T PSVSSI+RILR++
Sbjct: 137 LKDGVCDRNTVPSVSSISRILRSK 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,312,197
Number of Sequences: 539616
Number of extensions: 7987186
Number of successful extensions: 22196
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 20832
Number of HSP's gapped (non-prelim): 1431
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)