Query psy12776
Match_columns 435
No_of_seqs 367 out of 2094
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 19:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 2.6E-19 8.9E-24 144.7 3.4 51 227-277 17-67 (84)
2 2dmt_A Homeobox protein BARH-l 99.7 1.3E-18 4.3E-23 140.0 3.1 50 228-277 13-62 (80)
3 2cue_A Paired box protein PAX6 99.7 4.4E-18 1.5E-22 136.9 5.7 48 230-277 5-52 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 1.7E-18 5.8E-23 138.3 3.3 50 228-277 13-62 (80)
5 2dms_A Homeobox protein OTX2; 99.7 3.7E-18 1.3E-22 137.2 4.8 49 229-277 4-52 (80)
6 1nk2_P Homeobox protein VND; h 99.7 5.7E-18 2E-22 135.3 5.5 51 227-277 4-54 (77)
7 2dmu_A Homeobox protein goosec 99.7 5.3E-18 1.8E-22 132.9 3.6 48 230-277 5-52 (70)
8 2cra_A Homeobox protein HOX-B1 99.7 2.4E-18 8E-23 135.1 1.5 49 229-277 4-52 (70)
9 1fjl_A Paired protein; DNA-bin 99.7 7.3E-18 2.5E-22 135.7 4.1 50 228-277 14-63 (81)
10 2dmq_A LIM/homeobox protein LH 99.7 1.2E-17 4.1E-22 133.8 5.2 48 230-277 5-52 (80)
11 1wh5_A ZF-HD homeobox family p 99.7 5.6E-18 1.9E-22 137.4 3.2 49 229-277 14-66 (80)
12 1puf_A HOX-1.7, homeobox prote 99.7 1.4E-17 4.9E-22 133.0 5.5 49 229-277 10-58 (77)
13 2da1_A Alpha-fetoprotein enhan 99.7 3.1E-18 1.1E-22 134.0 1.5 49 229-277 4-52 (70)
14 2da2_A Alpha-fetoprotein enhan 99.7 4.3E-18 1.5E-22 133.2 2.0 49 229-277 4-52 (70)
15 2h1k_A IPF-1, pancreatic and d 99.7 7.4E-18 2.5E-22 129.7 3.1 47 231-277 2-48 (63)
16 2vi6_A Homeobox protein nanog; 99.7 3.1E-18 1.1E-22 131.3 0.7 47 231-277 2-48 (62)
17 2e1o_A Homeobox protein PRH; D 99.7 1.2E-17 4.1E-22 131.1 3.8 47 231-277 6-52 (70)
18 1wh7_A ZF-HD homeobox family p 99.7 9.6E-18 3.3E-22 136.3 3.1 48 229-277 14-66 (80)
19 3a01_A Homeodomain-containing 99.7 2.2E-17 7.6E-22 136.9 5.3 50 228-277 13-62 (93)
20 2r5y_A Homeotic protein sex co 99.7 8.6E-18 3E-22 137.4 2.0 48 230-277 26-73 (88)
21 1ahd_P Antennapedia protein mu 99.7 1E-17 3.6E-22 131.1 2.4 46 232-277 2-47 (68)
22 1yz8_P Pituitary homeobox 2; D 99.7 8.9E-18 3E-22 131.1 2.0 47 231-277 2-48 (68)
23 2djn_A Homeobox protein DLX-5; 99.7 1.1E-17 3.8E-22 131.2 2.2 49 229-277 4-52 (70)
24 2hdd_A Protein (engrailed home 99.7 1.3E-17 4.5E-22 127.4 2.5 46 232-277 3-48 (61)
25 1zq3_P PRD-4, homeotic bicoid 99.7 2.2E-17 7.5E-22 129.1 3.4 46 232-277 2-47 (68)
26 2m0c_A Homeobox protein arista 99.7 1.2E-17 4.3E-22 131.6 1.9 49 229-277 6-54 (75)
27 1ig7_A Homeotic protein MSX-1; 99.7 2.8E-17 9.6E-22 124.1 3.7 45 233-277 1-45 (58)
28 1bw5_A ISL-1HD, insulin gene e 99.7 7.2E-18 2.5E-22 130.7 0.4 47 231-277 2-48 (66)
29 2da4_A Hypothetical protein DK 99.7 1.8E-17 6E-22 133.2 2.2 49 229-277 5-57 (80)
30 3a02_A Homeobox protein arista 99.7 1.9E-17 6.5E-22 126.1 1.9 43 235-277 2-44 (60)
31 1ftt_A TTF-1 HD, thyroid trans 99.7 2.9E-17 9.9E-22 128.4 2.8 46 232-277 2-47 (68)
32 1b8i_A Ultrabithorax, protein 99.6 2.1E-17 7.3E-22 133.5 1.8 47 231-277 19-65 (81)
33 2l7z_A Homeobox protein HOX-A1 99.6 4.6E-17 1.6E-21 129.0 3.4 48 230-277 5-52 (73)
34 2hi3_A Homeodomain-only protei 99.6 5.9E-17 2E-21 128.2 3.7 45 233-277 3-48 (73)
35 1b72_A Protein (homeobox prote 99.6 5E-17 1.7E-21 135.2 3.0 48 230-277 32-79 (97)
36 1jgg_A Segmentation protein EV 99.6 7.9E-17 2.7E-21 122.7 3.4 45 233-277 2-46 (60)
37 1uhs_A HOP, homeodomain only p 99.6 7.4E-17 2.5E-21 127.2 3.3 45 233-277 2-47 (72)
38 3nar_A ZHX1, zinc fingers and 99.6 4.9E-17 1.7E-21 135.2 1.5 49 229-277 22-70 (96)
39 2cuf_A FLJ21616 protein; homeo 99.6 1.4E-16 4.7E-21 132.1 4.1 49 229-277 4-67 (95)
40 2k40_A Homeobox expressed in E 99.6 5.5E-17 1.9E-21 126.1 1.4 45 233-277 2-46 (67)
41 2da5_A Zinc fingers and homeob 99.6 1.1E-16 3.7E-21 127.6 3.1 44 234-277 9-52 (75)
42 1akh_A Protein (mating-type pr 99.6 7.4E-17 2.5E-21 122.9 1.8 48 230-277 3-50 (61)
43 3rkq_A Homeobox protein NKX-2. 99.6 1.2E-16 4.2E-21 119.8 2.5 46 232-277 2-47 (58)
44 3a03_A T-cell leukemia homeobo 99.6 1.5E-16 5.2E-21 119.9 2.9 41 237-277 2-42 (56)
45 2ly9_A Zinc fingers and homeob 99.6 1E-16 3.5E-21 126.6 1.7 47 231-277 5-51 (74)
46 2ecb_A Zinc fingers and homeob 99.6 1.1E-16 3.7E-21 133.0 1.9 40 238-277 17-56 (89)
47 2dn0_A Zinc fingers and homeob 99.6 9.5E-17 3.2E-21 127.9 1.1 45 233-277 9-53 (76)
48 1b72_B Protein (PBX1); homeodo 99.6 2.5E-16 8.6E-21 127.9 3.3 45 233-277 2-49 (87)
49 1x2n_A Homeobox protein pknox1 99.6 5.9E-16 2E-20 122.1 4.5 49 229-277 4-55 (73)
50 2ecc_A Homeobox and leucine zi 99.6 3.9E-16 1.3E-20 126.5 3.5 43 235-277 6-48 (76)
51 2da6_A Hepatocyte nuclear fact 99.6 1E-15 3.5E-20 130.4 6.0 49 229-277 3-72 (102)
52 2dmp_A Zinc fingers and homeob 99.6 5E-16 1.7E-20 127.9 3.4 40 238-277 19-58 (89)
53 1ic8_A Hepatocyte nuclear fact 99.6 8.6E-17 2.9E-21 150.4 -3.9 49 229-277 112-181 (194)
54 1e3o_C Octamer-binding transcr 99.6 6.9E-16 2.4E-20 139.2 2.1 48 230-277 99-146 (160)
55 1au7_A Protein PIT-1, GHF-1; c 99.5 7.8E-16 2.7E-20 137.2 2.2 49 229-277 84-132 (146)
56 1puf_B PRE-B-cell leukemia tra 99.5 1.2E-15 4.2E-20 120.3 2.8 45 233-277 2-49 (73)
57 2xsd_C POU domain, class 3, tr 99.5 5.1E-16 1.7E-20 141.1 0.5 49 229-277 96-144 (164)
58 1du6_A PBX1, homeobox protein 99.5 7.1E-16 2.4E-20 118.6 0.8 46 232-277 3-51 (64)
59 3d1n_I POU domain, class 6, tr 99.5 1.8E-15 6.2E-20 135.0 3.1 49 229-277 90-138 (151)
60 2cqx_A LAG1 longevity assuranc 99.5 8.5E-16 2.9E-20 122.2 0.6 45 233-277 9-54 (72)
61 1k61_A Mating-type protein alp 99.5 2E-15 7E-20 114.7 2.5 43 235-277 1-46 (60)
62 2dmn_A Homeobox protein TGIF2L 99.5 6.6E-15 2.3E-19 119.7 4.5 49 229-277 4-55 (83)
63 1mnm_C Protein (MAT alpha-2 tr 99.5 4.4E-15 1.5E-19 121.1 3.1 47 231-277 26-75 (87)
64 1wi3_A DNA-binding protein SAT 99.5 6.6E-15 2.3E-19 117.6 3.6 49 229-277 4-53 (71)
65 1lfb_A Liver transcription fac 99.5 1.4E-15 4.9E-20 128.3 -0.3 50 228-277 5-75 (99)
66 3nau_A Zinc fingers and homeob 99.5 5.9E-15 2E-19 116.9 2.7 38 240-277 12-49 (66)
67 2l9r_A Homeobox protein NKX-3. 99.5 2.2E-15 7.4E-20 119.6 -0.0 41 237-277 9-49 (69)
68 1le8_B Mating-type protein alp 99.5 6.6E-15 2.3E-19 119.4 2.2 45 233-277 3-50 (83)
69 3l1p_A POU domain, class 5, tr 99.5 6.4E-15 2.2E-19 132.4 2.1 48 230-277 94-141 (155)
70 2d5v_A Hepatocyte nuclear fact 99.4 1.3E-14 4.4E-19 130.6 1.0 49 229-277 94-142 (164)
71 2e19_A Transcription factor 8; 99.4 1.6E-14 5.4E-19 112.6 -0.2 40 238-277 9-48 (64)
72 1x2m_A LAG1 longevity assuranc 99.4 2.7E-14 9.1E-19 112.3 -0.1 37 241-277 9-46 (64)
73 3k2a_A Homeobox protein MEIS2; 99.3 1.1E-12 3.8E-17 102.7 1.9 40 238-277 4-46 (67)
74 2h8r_A Hepatocyte nuclear fact 99.1 9.8E-12 3.3E-16 118.5 2.0 44 227-270 137-180 (221)
75 1mh3_A Maltose binding-A1 home 99.1 1.2E-11 4.2E-16 121.2 0.3 45 233-277 366-410 (421)
76 2lk2_A Homeobox protein TGIF1; 99.0 1.5E-10 5E-15 96.5 5.0 41 237-277 10-53 (89)
77 2da7_A Zinc finger homeobox pr 98.9 1.7E-10 5.9E-15 92.4 2.0 37 241-277 14-50 (71)
78 2nzz_A Penetratin conjugated G 98.1 2.7E-07 9.2E-12 65.5 -1.5 17 343-359 5-21 (37)
79 1k78_A Paired box protein PAX5 75.0 0.57 1.9E-05 39.8 -0.2 48 70-117 95-147 (149)
80 2h8r_A Hepatocyte nuclear fact 61.5 0.41 1.4E-05 45.6 -4.2 44 68-111 15-67 (221)
81 2rgt_A Fusion of LIM/homeobox 59.1 0.26 8.9E-06 43.6 -5.7 31 230-260 134-164 (169)
82 2k27_A Paired box protein PAX- 57.0 3.5 0.00012 35.4 1.2 45 69-113 87-136 (159)
83 1pdn_C Protein (PRD paired); p 56.4 1.2 4.1E-05 35.7 -1.8 42 70-111 80-126 (128)
84 2ys9_A Homeobox and leucine zi 54.4 7.7 0.00026 30.9 2.7 33 245-277 19-51 (70)
85 2elh_A CG11849-PA, LD40883P; s 22.1 1.7E+02 0.0058 22.5 5.6 40 233-277 17-56 (87)
86 1etf_B REV peptide; complex (R 21.0 35 0.0012 22.4 1.1 14 346-359 7-20 (26)
87 3i5g_B Myosin regulatory light 20.3 1.4E+02 0.0049 24.8 5.2 41 235-275 6-51 (153)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-19 Score=144.69 Aligned_cols=51 Identities=27% Similarity=0.378 Sum_probs=47.8
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 227 SEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 227 s~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
....+.||.||.|+..|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 345567889999999999999999999999999999999999999999999
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=140.04 Aligned_cols=50 Identities=40% Similarity=0.507 Sum_probs=47.4
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 228 EQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 228 ~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..++.||.|+.|+.+|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 45567889999999999999999999999999999999999999999999
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=4.4e-18 Score=136.88 Aligned_cols=48 Identities=56% Similarity=0.862 Sum_probs=46.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.+|.|+.|+.+|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456889999999999999999999999999999999999999999999
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-18 Score=138.33 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=47.3
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 228 EQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 228 ~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.+.||.||.||.+|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 34567889999999999999999999999999999999999999999999
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3.7e-18 Score=137.17 Aligned_cols=49 Identities=49% Similarity=0.653 Sum_probs=46.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.||.|+.|+.+|+.+||..|+.++||+..+|++||.+|+|++++|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3567889999999999999999999999999999999999999999999
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.71 E-value=5.7e-18 Score=135.31 Aligned_cols=51 Identities=31% Similarity=0.458 Sum_probs=47.8
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 227 SEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 227 s~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+.+++++|.|+.|+..|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 345567889999999999999999999999999999999999999999999
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-18 Score=132.87 Aligned_cols=48 Identities=46% Similarity=0.688 Sum_probs=45.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.+|.|+.|+.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 456789999999999999999999999999999999999999999999
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.4e-18 Score=135.08 Aligned_cols=49 Identities=33% Similarity=0.523 Sum_probs=46.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.||.|+.|+.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 3456888999999999999999999999999999999999999999999
No 9
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=7.3e-18 Score=135.73 Aligned_cols=50 Identities=58% Similarity=0.862 Sum_probs=45.9
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 228 EQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 228 ~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..++++|.|+.|+..|+..||..|+.++||+..+|++||.++||+++||+
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 35667889999999999999999999999999999999999999999999
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=133.77 Aligned_cols=48 Identities=31% Similarity=0.410 Sum_probs=46.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.||.|+.|+.+|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456889999999999999999999999999999999999999999999
No 11
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=5.6e-18 Score=137.37 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=46.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhh----cCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDK----SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fer----n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+++||.||.||.+|+.+||..|+. ++||+..+|++||.+|||+++|||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccccc
Confidence 3467889999999999999999999 999999999999999999999999
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=1.4e-17 Score=133.01 Aligned_cols=49 Identities=31% Similarity=0.352 Sum_probs=46.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.+|.|+.|+..|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 3456789999999999999999999999999999999999999999999
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-18 Score=134.03 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=46.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..+.+|.|+.||.+|+.+||..|+.++||+..++++||.++||+++||+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456889999999999999999999999999999999999999999999
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-18 Score=133.19 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=46.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..+.||.|+.|+.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 4456889999999999999999999999999999999999999999999
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.68 E-value=7.4e-18 Score=129.74 Aligned_cols=47 Identities=36% Similarity=0.473 Sum_probs=43.5
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+.||.|+.||..|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 35788999999999999999999999999999999999999999999
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.68 E-value=3.1e-18 Score=131.31 Aligned_cols=47 Identities=30% Similarity=0.418 Sum_probs=40.8
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+++|.|+.||..|+.+||..|+.++||+..+|++||..+||++++|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45788999999999999999999999999999999999999999999
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.2e-17 Score=131.06 Aligned_cols=47 Identities=36% Similarity=0.460 Sum_probs=45.0
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+.++.|+.|+.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 45678999999999999999999999999999999999999999999
No 18
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=9.6e-18 Score=136.34 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=45.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhh-----cCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDK-----SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fer-----n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..++||.||.||.+|+.+|| .|.. ++||+..+|++||.+|+|+++|||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 45678899999999999999 8999 999999999999999999999999
No 19
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=2.2e-17 Score=136.86 Aligned_cols=50 Identities=36% Similarity=0.575 Sum_probs=47.1
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 228 EQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 228 ~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.++||.||.||.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 34567889999999999999999999999999999999999999999999
No 20
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.67 E-value=8.6e-18 Score=137.40 Aligned_cols=48 Identities=33% Similarity=0.442 Sum_probs=42.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.||.||.|+..|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 356788999999999999999999999999999999999999999999
No 21
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.67 E-value=1e-17 Score=131.05 Aligned_cols=46 Identities=35% Similarity=0.444 Sum_probs=44.6
Q ss_pred CCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 232 FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 232 kRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+||.|+.||.+|+.+||..|+.++||+..+|++||..+||+++||+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 4788999999999999999999999999999999999999999999
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.67 E-value=8.9e-18 Score=131.11 Aligned_cols=47 Identities=49% Similarity=0.749 Sum_probs=45.4
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++||.|+.|+..|+.+||..|+.++||+..++++||..+||+++||+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 46789999999999999999999999999999999999999999999
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-17 Score=131.25 Aligned_cols=49 Identities=33% Similarity=0.523 Sum_probs=46.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..+.||.|+.|+.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456889999999999999999999999999999999999999999999
No 24
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.67 E-value=1.3e-17 Score=127.44 Aligned_cols=46 Identities=35% Similarity=0.613 Sum_probs=41.8
Q ss_pred CCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 232 FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 232 kRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.||.|+.||.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 5788999999999999999999999999999999999999999999
No 25
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=2.2e-17 Score=129.06 Aligned_cols=46 Identities=41% Similarity=0.559 Sum_probs=44.8
Q ss_pred CCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 232 FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 232 kRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+||.|+.||..|+.+||..|+.++||+..+|++||..+||++++|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 5789999999999999999999999999999999999999999999
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-17 Score=131.59 Aligned_cols=49 Identities=63% Similarity=0.870 Sum_probs=46.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++++|.|+.|+..|+..||..|+.++||+..++++||..+||++++|+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456888999999999999999999999999999999999999999999
No 27
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=2.8e-17 Score=124.05 Aligned_cols=45 Identities=33% Similarity=0.617 Sum_probs=43.9
Q ss_pred CCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
||.|+.||.+|+.+||..|+.++||+..++++||.++||+++||+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 578999999999999999999999999999999999999999999
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=7.2e-18 Score=130.73 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=45.5
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+++|.|+.||.+|+..||..|+.++||+..++++||..+||+++||+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 46789999999999999999999999999999999999999999999
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-17 Score=133.18 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=46.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhc----CCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKS----HYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern----~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.||.||.||.+|+.+||..|+.+ +||+..+|++||.++||+++||+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 45678899999999999999999999 99999999999999999999999
No 30
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.65 E-value=1.9e-17 Score=126.14 Aligned_cols=43 Identities=56% Similarity=0.819 Sum_probs=39.8
Q ss_pred CCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 235 NRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 235 ~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.|+.||.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 4789999999999999999999999999999999999999999
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=2.9e-17 Score=128.37 Aligned_cols=46 Identities=35% Similarity=0.551 Sum_probs=44.7
Q ss_pred CCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 232 FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 232 kRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+||.|+.||..|+.+||..|..++||+..+|++||..+||++++|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 4788999999999999999999999999999999999999999999
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.65 E-value=2.1e-17 Score=133.49 Aligned_cols=47 Identities=38% Similarity=0.496 Sum_probs=41.8
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+.||.|+.|+.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 45788999999999999999999999999999999999999999999
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.64 E-value=4.6e-17 Score=129.03 Aligned_cols=48 Identities=33% Similarity=0.538 Sum_probs=46.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.||.|+.|+..|+.+||..|+.++||+..+|++||..+||+++||+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 456889999999999999999999999999999999999999999999
No 34
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=5.9e-17 Score=128.22 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=43.3
Q ss_pred CCCCccCCHHHHHHHHHHhhh-cCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDK-SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fer-n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++.|+.||.+|+.+||..|+. ++||+..+|++||.++||+++||+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 567899999999999999995 999999999999999999999999
No 35
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=5e-17 Score=135.23 Aligned_cols=48 Identities=38% Similarity=0.464 Sum_probs=42.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.+|.||.||.+|+.+||..|+.++||+..+|++||.+|||+++||+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 346788999999999999999999999999999999999999999999
No 36
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.63 E-value=7.9e-17 Score=122.72 Aligned_cols=45 Identities=44% Similarity=0.623 Sum_probs=43.4
Q ss_pred CCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
||.|+.||.+|+..||..|+.++||+..++++||.++||+++||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999999999999999999999999999999
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=7.4e-17 Score=127.19 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=43.1
Q ss_pred CCCCccCCHHHHHHHHHHhhh-cCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDK-SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fer-n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.|+.|+.+|+.+||..|+. ++||+..+|++||.++||+++||+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 467899999999999999996 999999999999999999999999
No 38
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.62 E-value=4.9e-17 Score=135.22 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
....+|.|+.|+.+|+.+||..|+.++||+..+|++||.+|||+++|||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 3445678999999999999999999999999999999999999999999
No 39
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.4e-16 Score=132.12 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=46.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcC---------------CCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTS---------------LSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLG---------------LtErQVQ 277 (435)
.+++||.|+.|+..|+.+||..|+.++||+..+|++||..|+ |++.+|+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~ 67 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 67 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHH
Confidence 456788999999999999999999999999999999999999 9999999
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.62 E-value=5.5e-17 Score=126.11 Aligned_cols=45 Identities=40% Similarity=0.601 Sum_probs=44.1
Q ss_pred CCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
||.|+.||.+|+.+||..|+.++||+..++++||.++||+++||+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 688999999999999999999999999999999999999999999
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=127.62 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.7
Q ss_pred CCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 234 RNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 234 R~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++|+.||.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45567999999999999999999999999999999999999999
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.62 E-value=7.4e-17 Score=122.89 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.||+
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 466889999999999999999999999999999999999999999999
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=119.77 Aligned_cols=46 Identities=33% Similarity=0.543 Sum_probs=44.5
Q ss_pred CCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 232 FRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 232 kRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+||.|+.|+..|+..||..|+.++||+..++++||.++||+++||+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999999999
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=119.94 Aligned_cols=41 Identities=37% Similarity=0.536 Sum_probs=38.8
Q ss_pred ccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 237 TTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 237 T~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
|.||.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 67999999999999999999999999999999999999999
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=1e-16 Score=126.60 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=44.9
Q ss_pred CCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..++.|+.||.+|+.+||..|+.++||+..+|++||.++||+++|||
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHee
Confidence 34678999999999999999999999999999999999999999999
No 46
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.1e-16 Score=133.04 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 238 TFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 238 ~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.||.+|+.+||+.|+.++||+..+|++||..|||+++||+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 6899999999999999999999999999999999999999
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-17 Score=127.94 Aligned_cols=45 Identities=29% Similarity=0.350 Sum_probs=43.2
Q ss_pred CCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.|+.||.+|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 456899999999999999999999999999999999999999999
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.60 E-value=2.5e-16 Score=127.93 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=43.1
Q ss_pred CCCCccCCHHHHHHHHHHh---hhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEF---DKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~F---ern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
||.|+.|+.+|+.+||..| ..++||+..+|++||.++||+++||+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~ 49 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 89999999999999999999999999
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=5.9e-16 Score=122.11 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=45.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhh---cCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fer---n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.+|.|+.|+..|+.+||..|.. ++||+..+|++||.++||+++||+
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 55 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4456788999999999999999987 999999999999999999999999
No 50
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=3.9e-16 Score=126.51 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=41.1
Q ss_pred CCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 235 NRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 235 ~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.|+.||.+|+.+||+.|..++||+..+|++||..+||+++||+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 4556999999999999999999999999999999999999999
No 51
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=130.36 Aligned_cols=49 Identities=27% Similarity=0.410 Sum_probs=45.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhc---------------------CCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKT---------------------SLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kL---------------------GLtErQVQ 277 (435)
.+++||.|+.|+..|+.+||+.|+.++||+..+|++||..| +|++.+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~ 72 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVY 72 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhccccccccccccee
Confidence 35678899999999999999999999999999999999999 78888888
No 52
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5e-16 Score=127.95 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 238 TFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 238 ~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.||.+|+.+||..|+.++||+..+|++||.++||+++|||
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 4899999999999999999999999999999999999999
No 53
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=8.6e-17 Score=150.36 Aligned_cols=49 Identities=29% Similarity=0.460 Sum_probs=43.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcC---------------------CCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTS---------------------LSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLG---------------------LtErQVQ 277 (435)
.+++||.|+.|+..|+.+||+.|+.++||+..+|++||..++ |++.+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~ 181 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 181 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccc
Confidence 356789999999999999999999999999999999999999 9999999
No 54
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=6.9e-16 Score=139.17 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=42.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++||.||.|+..|+.+||..|+.++||+..+|++||.++||+++|||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 467889999999999999999999999999999999999999999999
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=7.8e-16 Score=137.20 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=43.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+++||.||.|+..|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 4566888999999999999999999999999999999999999999999
No 56
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.55 E-value=1.2e-15 Score=120.30 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=43.8
Q ss_pred CCCCccCCHHHHHHHHHHh---hhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEF---DKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~F---ern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
||.|+.|+..|+..||..| ..++||+..+|++||.++||+++||+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~ 49 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 89999999999999999999999999
No 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.54 E-value=5.1e-16 Score=141.06 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=38.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+++||.||.|+..|+.+||+.|+.++||+..+|++||.++||+++|||
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 4567889999999999999999999999999999999999999999999
No 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=7.1e-16 Score=118.65 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCCCCccCCHHHHHHHHHHh---hhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 232 FRRNRTTFSPSQLDELEKEF---DKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 232 kRR~RT~FT~eQL~~LE~~F---ern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.|+.|+.+|+.+||..| ..++||+..++++||.++||++.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 51 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 51 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 47889999999999999999 89999999999999999999999999
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.53 E-value=1.8e-15 Score=134.97 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=46.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+++||.|+.|+..|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 4567889999999999999999999999999999999999999999999
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=8.5e-16 Score=122.24 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=41.7
Q ss_pred CCCCccCCHHHHHHHHHHh-hhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEF-DKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~F-ern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+.|+.++.+|+.+||+.| +.++||+..+|++||.++||+++|||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 4456678899999999999 99999999999999999999999999
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.53 E-value=2e-15 Score=114.71 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=41.5
Q ss_pred CCccCCHHHHHHHHHHhhh---cCCCChHHHHHHHHhcCCCcccee
Q psy12776 235 NRTTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 235 ~RT~FT~eQL~~LE~~Fer---n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+|+.|+.+|+.+||..|.. ++||+..+|++||.++||+++||+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~ 46 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 3678999999999999999 999999999999999999999999
No 62
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-15 Score=119.66 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=45.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhh---cCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fer---n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..+++|.|+.|+.+|+..||..|.. ++||+..+|++||.++||+++||+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~ 55 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQIS 55 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3456788999999999999999987 599999999999999999999999
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.51 E-value=4.4e-15 Score=121.07 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=44.5
Q ss_pred CCCCCCccCCHHHHHHHHHHhhh---cCCCChHHHHHHHHhcCCCcccee
Q psy12776 231 KFRRNRTTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 231 KkRR~RT~FT~eQL~~LE~~Fer---n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++++.|+.|+.+|+.+||..|.. ++||+..+|++||.++||+++||+
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~ 75 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 75 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 45667899999999999999999 999999999999999999999999
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=6.6e-15 Score=117.62 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=46.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhh-cCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDK-SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fer-n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+++||.||.|+.+||..|+..|+. ++||+..+|++||.++||++++||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4467899999999999999999999 999999999999999999999999
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.50 E-value=1.4e-15 Score=128.32 Aligned_cols=50 Identities=28% Similarity=0.439 Sum_probs=41.2
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHh------------------cC---CCcccee
Q psy12776 228 EQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAK------------------TS---LSEARVQ 277 (435)
Q Consensus 228 ~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~k------------------LG---LtErQVQ 277 (435)
..+++||.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 34567889999999999999999999999999999999999 88 9999999
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.49 E-value=5.9e-15 Score=116.88 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 240 SPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 240 T~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+.+|+.+||..|..++||+..+|++||..+||+++||+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVk 49 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 78999999999999999999999999999999999999
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-15 Score=119.63 Aligned_cols=41 Identities=32% Similarity=0.514 Sum_probs=39.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 237 TTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 237 T~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..+|..|+.+||+.|+.++||+..+|++||.++||+++|||
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 36799999999999999999999999999999999999999
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.48 E-value=6.6e-15 Score=119.38 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=41.4
Q ss_pred CCCCccCCHHHHHHHHHHhhh---cCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fer---n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++.|++|+.+|+.+||..|.. ++||+..+|++||.++||+++||+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~ 50 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 50 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcc
Confidence 345667999999999999999 999999999999999999999999
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.48 E-value=6.4e-15 Score=132.36 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=45.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+++||.|+.|+..|+..||..|+.++||+..+|++||.++||+++|||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~ 141 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhee
Confidence 356788999999999999999999999999999999999999999999
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.44 E-value=1.3e-14 Score=130.60 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 229 QPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 229 ~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..+.||.|+.|+..|+.+||..|+.++||+..+|++||.++||+++||+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~ 142 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 4566889999999999999999999999999999999999999999999
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-14 Score=112.61 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 238 TFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 238 ~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.++.+|+..||+.|+.++||+..+|++||.++||+++|||
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 4578999999999999999999999999999999999999
No 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=2.7e-14 Score=112.28 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHHHHHHh-hhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 241 PSQLDELEKEF-DKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 241 ~eQL~~LE~~F-ern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..|+.+||+.| ..++||+..+|++||.+|||+++|||
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 45899999999 57999999999999999999999999
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=1.1e-12 Score=102.66 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHhh---hcCCCChHHHHHHHHhcCCCcccee
Q psy12776 238 TFSPSQLDELEKEFD---KSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 238 ~FT~eQL~~LE~~Fe---rn~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.|+.+|+..|+..|. .++||+..+|++||.++||+++||+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~ 46 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVN 46 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 689999999999999 9999999999999999999999999
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.13 E-value=9.8e-12 Score=118.46 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=38.0
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcC
Q psy12776 227 SEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTS 270 (435)
Q Consensus 227 s~~rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLG 270 (435)
...+++||.|+.|++.|+.+||+.|+.++||+..+|++||..++
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 34567889999999999999999999999999999999999988
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.08 E-value=1.2e-11 Score=121.22 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++.|+.|+.+|+..||+.|+.++||+..+|++||+++||+++|||
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~ 410 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 410 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 456788999999999999999999999999999999999999999
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=96.52 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=38.8
Q ss_pred ccCCHHHHHHHHHHhhh---cCCCChHHHHHHHHhcCCCcccee
Q psy12776 237 TTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 237 T~FT~eQL~~LE~~Fer---n~YPs~~eReeLA~kLGLtErQVQ 277 (435)
..|+.+++..|+..|.. ++||+..+|++||.++||+++||+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~ 53 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC 53 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 35899999999999987 899999999999999999999999
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=92.43 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 241 PSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 241 ~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
.+|+..||..|..+++|+..++++||..+||++++||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 5789999999999999999999999999999999999
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.06 E-value=2.7e-07 Score=65.47 Aligned_cols=17 Identities=41% Similarity=1.091 Sum_probs=15.3
Q ss_pred eeeecchhHHHHHHHhh
Q psy12776 343 VWFSNRRAKWRRHQRMN 359 (435)
Q Consensus 343 ~wf~n~r~~~~~~~~~~ 359 (435)
||||||||||||.++..
T Consensus 5 IWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 5 IWFQNRRMKWKKRVFND 21 (37)
T ss_dssp TTTTCSHHHHTSSHHHH
T ss_pred eccHHHHHHHHHHhHHH
Confidence 99999999999988763
No 79
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=74.96 E-value=0.57 Score=39.76 Aligned_cols=48 Identities=38% Similarity=0.576 Sum_probs=35.4
Q ss_pred hhccchhhhhcCCceeeeeec-----cccCCCCCCCcchhhhHHHHhhHHHHH
Q psy12776 70 KCNRTLPVLETVPHIFPMKII-----EGVCTNATAPSVSSINRILRNRAAERA 117 (435)
Q Consensus 70 ~~~~i~~~k~e~P~iFawEi~-----e~vC~~~~~PSVssinrilr~~~~~~~ 117 (435)
....|..+.+++|.+.+|||. +++|..+..+|.++|.|+|+....++.
T Consensus 95 ~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~~ 147 (149)
T 1k78_A 95 VVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQPP 147 (149)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCCC
Confidence 456788888999999999974 445776667999999999997776553
No 80
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=61.47 E-value=0.41 Score=45.64 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=36.0
Q ss_pred chhhccchhhhhcCCceeeeee-----ccccCCCC----CCCcchhhhHHHHh
Q psy12776 68 FLKCNRTLPVLETVPHIFPMKI-----IEGVCTNA----TAPSVSSINRILRN 111 (435)
Q Consensus 68 ~~~~~~i~~~k~e~P~iFawEi-----~e~vC~~~----~~PSVssinrilr~ 111 (435)
-.|...|..|++++|.+|+|+| ..|+|..+ ..+|+|+|+|+++.
T Consensus 15 ~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 15 AEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 3577889999999999999996 34666553 56999999999973
No 81
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=59.08 E-value=0.26 Score=43.57 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=22.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHhhhcCCCChH
Q psy12776 230 PKFRRNRTTFSPSQLDELEKEFDKSHYPCVS 260 (435)
Q Consensus 230 rKkRR~RT~FT~eQL~~LE~~Fern~YPs~~ 260 (435)
.+.||.||.|+.+|++.|+..|+.++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 3457899999999999999999999998653
No 82
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=57.00 E-value=3.5 Score=35.37 Aligned_cols=45 Identities=42% Similarity=0.635 Sum_probs=36.2
Q ss_pred hhhccchhhhhcCCceeeeee-----ccccCCCCCCCcchhhhHHHHhhH
Q psy12776 69 LKCNRTLPVLETVPHIFPMKI-----IEGVCTNATAPSVSSINRILRNRA 113 (435)
Q Consensus 69 ~~~~~i~~~k~e~P~iFawEi-----~e~vC~~~~~PSVssinrilr~~~ 113 (435)
.....|..+.+++|.+.+||| .+++|..+..+|.+.|.|+|+...
T Consensus 87 ~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 87 KVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp THHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 356778888889999999996 346677777899999999999543
No 83
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=56.36 E-value=1.2 Score=35.70 Aligned_cols=42 Identities=43% Similarity=0.653 Sum_probs=30.7
Q ss_pred hhccchhhhhcCCceeeeeecc-----ccCCCCCCCcchhhhHHHHh
Q psy12776 70 KCNRTLPVLETVPHIFPMKIIE-----GVCTNATAPSVSSINRILRN 111 (435)
Q Consensus 70 ~~~~i~~~k~e~P~iFawEi~e-----~vC~~~~~PSVssinrilr~ 111 (435)
....|..+.+++|.+.++||.+ |++.....+|.++|.|+|+.
T Consensus 80 ~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 80 IENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp HHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 4567888888999999999755 44433345899999999974
No 84
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.44 E-value=7.7 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 245 DELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 245 ~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
+.|++.|...+.+....-+.|+.+.+|+..||+
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 789999999999999999999999999999999
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=22.14 E-value=1.7e+02 Score=22.53 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=27.4
Q ss_pred CCCCccCCHHHHHHHHHHhhhcCCCChHHHHHHHHhcCCCcccee
Q psy12776 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277 (435)
Q Consensus 233 RR~RT~FT~eQL~~LE~~Fern~YPs~~eReeLA~kLGLtErQVQ 277 (435)
++.+..|+.++....-..++.. . ...++|+++|++...|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~ 56 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLR 56 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHH
Confidence 4456678888865555555432 2 35689999999887776
No 86
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=21.05 E-value=35 Score=22.41 Aligned_cols=14 Identities=50% Similarity=0.985 Sum_probs=10.9
Q ss_pred ecchhHHHHHHHhh
Q psy12776 346 SNRRAKWRRHQRMN 359 (435)
Q Consensus 346 ~n~r~~~~~~~~~~ 359 (435)
-|||-+||+.|+.-
T Consensus 7 RnRRRRWR~Rq~qi 20 (26)
T 1etf_B 7 RNRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 38999999887643
No 87
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.29 E-value=1.4e+02 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCccCCHHHHHHHHHHhhh-----cCCCChHHHHHHHHhcCCCccc
Q psy12776 235 NRTTFSPSQLDELEKEFDK-----SHYPCVSTRERLAAKTSLSEAR 275 (435)
Q Consensus 235 ~RT~FT~eQL~~LE~~Fer-----n~YPs~~eReeLA~kLGLtErQ 275 (435)
+|..+|.+|+..|+..|.. +-+.+..+-..+.+.+|.....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 3456999999999999975 4578888888888888876654
Done!