RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12776
(435 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 71.4 bits (175), Expect = 2e-16
Identities = 27/45 (60%), Positives = 36/45 (80%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+RNRT+F+ Q++ LEKEF+++HYP V RERLAAK L EAR+Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
Score = 38.2 bits (89), Expect = 1e-04
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 343 VWFSNRRAKWRRHQRM 358
VWFSNRRAKWRR +++
Sbjct: 47 VWFSNRRAKWRREEKL 62
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 65.2 bits (159), Expect = 3e-14
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 223 SGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+ + R+ R ++ Q ELEKEF + Y R +A +L+E +V+
Sbjct: 4 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
Score = 36.7 bits (85), Expect = 3e-04
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 343 VWFSNRRAKWRRHQR 357
+WF NRR K ++ +
Sbjct: 59 IWFQNRRMKMKKINK 73
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 63.9 bits (155), Expect = 1e-13
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 50/126 (39%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQFLTIIPTPSHTYLPR 292
R +R T+ L +E F+++ YP + RE +A + + +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG----KKLSDLERVT- 55
Query: 293 IERNSTFMYFIFYLILVLFTTHCGKFLTIIPTPSHTWDLRIGRTDGHFKSVWFSNRRAKW 352
+ W F+NRR +
Sbjct: 56 ------------------------------SLKVYNW---------------FANRRKEI 70
Query: 353 RRHQRM 358
+R +
Sbjct: 71 KRRANI 76
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 61.4 bits (149), Expect = 5e-13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+ + FS Q ELEK+F+ Y R+RLA LSE +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
Score = 33.3 bits (76), Expect = 0.004
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 343 VWFSNRRAKWRR 354
WF NRRAKWRR
Sbjct: 46 TWFQNRRAKWRR 57
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 61.4 bits (149), Expect = 6e-13
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K R RT + QL L + + P +E+L T LS ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
Score = 39.1 bits (91), Expect = 5e-05
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 343 VWFSNRRAKWRRHQRM 358
VWF N+R K ++ M
Sbjct: 49 VWFQNKRCKDKKRSIM 64
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 60.6 bits (147), Expect = 9e-13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 236 RTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R T++ Q ELEKEF + Y R +A SL+E +++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
Score = 33.2 bits (76), Expect = 0.005
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 343 VWFSNRRAKWRRH 355
+WF NRR KW++
Sbjct: 43 IWFQNRRMKWKKE 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 60.6 bits (146), Expect = 2e-12
Identities = 14/122 (11%), Positives = 29/122 (23%), Gaps = 44/122 (36%)
Query: 236 RTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQFLTIIPTPSHTYLPRIER 295
R + P+ L + +++ P RE L + + +E + ++ E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 296 NSTFMYFIFYLILVLFTTHCGKFLTIIPTPSHTWDLRIGRTDGHFKSVWFSNRRAKWRRH 355
WF+NRR +
Sbjct: 61 R--------------------------------------------VYNWFANRRKEEAFR 76
Query: 356 QR 357
+
Sbjct: 77 HK 78
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 59.9 bits (145), Expect = 2e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Query: 231 KFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
K RR+RTTFS SQLDELE+ F+++ YP + TRE LA +T+L+EAR+Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 343 VWFSNRRAKWRRHQR 357
VWF NRRA+ R+
Sbjct: 48 VWFQNRRARLRKQHT 62
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 59.5 bits (144), Expect = 2e-12
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 234 RNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+ RTT S + D LE+ F + P R+A + +L + V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
Score = 32.2 bits (73), Expect = 0.009
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 332 RIGRTDGHFKSVWFSNRRAKWRRHQ 356
+ + VWF NRR + +R +
Sbjct: 35 ELNLEKEVVR-VWFCNRRQREKRVK 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 59.1 bits (143), Expect = 3e-12
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 234 RNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R RT FS QL L++EF+++ Y R++L+++ L+EA+++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
Score = 26.7 bits (59), Expect = 0.73
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 343 VWFSNRRAK 351
+WF N RAK
Sbjct: 45 IWFQNARAK 53
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 59.1 bits (143), Expect = 3e-12
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R+ R +S QL ELE+E+ + + R +++A TSLSE ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
Score = 33.7 bits (77), Expect = 0.003
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 343 VWFSNRRAKWRR 354
+WF NRR K ++
Sbjct: 47 IWFQNRRVKEKK 58
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 58.4 bits (141), Expect = 5e-12
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
RR RT F+ QL +LE F ++ YP +STRE +A T+L+EARV+
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
Score = 36.9 bits (85), Expect = 2e-04
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 323 PTPSHTWDL--RIGRTDGHFKSVWFSNRRAKWRRHQ 356
P S ++ T+ + VWF NRRAKWR+ +
Sbjct: 26 PDMSTREEIAVWTNLTEARVR-VWFKNRRAKWRKRE 60
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 58.0 bits (140), Expect = 1e-11
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R+ R FS +Q+ ELE+ F + Y RE LA+ L+ +V+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
Score = 36.1 bits (83), Expect = 5e-04
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 343 VWFSNRRAKWRRHQR 357
+WF N R K +R +
Sbjct: 48 IWFQNHRYKMKRQAK 62
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 56.5 bits (136), Expect = 3e-11
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 233 RRNRTTFSPSQLDELEKEFDKS-HYPCVSTRERLAAKTSLSEARVQ 277
T + Q++ LE F+K +P +T +AA+ L+E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
Score = 36.5 bits (84), Expect = 5e-04
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 343 VWFSNRRAKWRRHQRM 358
WF R A+WRR + +
Sbjct: 48 KWFKQRLAEWRRSEGL 63
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 56.0 bits (135), Expect = 4e-11
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 236 RTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+++ SP LE+ F + +E +A K ++ +V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
Score = 28.7 bits (64), Expect = 0.14
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 343 VWFSNRRAKWR 353
VWF N+R + +
Sbjct: 43 VWFINKRMRSK 53
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 56.9 bits (137), Expect = 4e-11
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 222 GSGSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
S RT F+ QL ELEKEF + Y + R +AA L+E +V+
Sbjct: 17 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
Score = 36.9 bits (85), Expect = 5e-04
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 343 VWFSNRRAKWRRHQR 357
+WF NRR K ++ +R
Sbjct: 73 IWFQNRRMKQKKRER 87
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 55.6 bits (134), Expect = 5e-11
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 236 RTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R F+ Q L F ++ P + ++ + L + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 55.3 bits (133), Expect = 6e-11
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 234 RNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R RT F+ QL LEKEF K +Y R LAA+ +L E+ ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
Score = 32.6 bits (74), Expect = 0.008
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 343 VWFSNRRAKWRR 354
VWF NRR K +R
Sbjct: 45 VWFQNRRMKDKR 56
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 6e-11
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+R RT+ LE F K P + +A + L + V+
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
Score = 31.1 bits (70), Expect = 0.031
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 343 VWFSNRRAKWRRH 355
VWF NRR K +R
Sbjct: 54 VWFCNRRQKGKRS 66
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 55.3 bits (133), Expect = 6e-11
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
R+ RT F+ +QL LE++F + Y ++ R ++ SL+E +V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
Score = 33.0 bits (75), Expect = 0.005
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 343 VWFSNRRAKWRR 354
+WF NRRAK +R
Sbjct: 46 IWFQNRRAKAKR 57
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 54.6 bits (131), Expect = 2e-10
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
RR RTTF+ SQ+ ELE+ F + Y L+AK +L A+V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
Score = 33.8 bits (77), Expect = 0.003
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 343 VWFSNRRAKWRRHQRMNLLKS 363
+WF NRR + + + +S
Sbjct: 47 IWFKNRRRRHKIQSDQHKDQS 67
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 54.3 bits (130), Expect = 3e-10
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 224 GSGSEQPKFRRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
S K R+ R F+ +Q ELE+ F + Y RE LA+ L+ +V+
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
Score = 34.3 bits (78), Expect = 0.003
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 332 RIGRTDGHFKSVWFSNRRAKWRRHQR 357
I T K +WF N R K +R Q
Sbjct: 45 LIRLTPTQVK-IWFQNHRYKTKRAQN 69
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 53.1 bits (128), Expect = 5e-10
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 89 IIEGVCTNATAPSVSSINRILRNRAAER 116
+ EGVCTN PSVSSINR+LRN A+E+
Sbjct: 36 LSEGVCTNDNIPSVSSINRVLRNLASEK 63
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 52.7 bits (126), Expect = 9e-10
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 233 RRNRTTFSPSQLDELEKEFD---KSHYPCVSTRERLAAKTSLSEARVQ 277
RR R F+ + L + F + YP +E LA K ++ ++V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
Score = 32.6 bits (74), Expect = 0.012
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 5/24 (20%)
Query: 342 SVWFSNRRAKWRRH-----QRMNL 360
S WF N+R +++++ + N+
Sbjct: 49 SNWFGNKRIRYKKNIGKFQEEANI 72
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 52.4 bits (125), Expect = 9e-10
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 226 GSEQPKFRRNRTTFSPSQLDELEKEFDK-SHYPCVSTRERLAAKTSLSEARVQ 277
GS R+RT S L L+ YP L+A+ L + +
Sbjct: 1 GSSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
Score = 31.2 bits (70), Expect = 0.033
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 343 VWFSNRRAKWRRHQR 357
+F N+R +
Sbjct: 54 KFFQNQRYHVKHSGP 68
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 51.1 bits (122), Expect = 2e-09
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 236 RTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
RT+ + LEK F ++ P +A + ++ + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
Score = 27.6 bits (61), Expect = 0.43
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 343 VWFSNRRAKWRR 354
VWFSNRR K +R
Sbjct: 44 VWFSNRRQKEKR 55
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 51.5 bits (123), Expect = 3e-09
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 219 DSVGSGSGSEQPKFRRNRTTFSPSQLDELEKEFDK----SHYPCVSTRERLAAKTSLSEA 274
S GS S +R RT F+ Q +++ ++ E+ A+T +
Sbjct: 4 GSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQ 63
Query: 275 RVQ 277
++
Sbjct: 64 VLK 66
Score = 28.4 bits (63), Expect = 0.43
Identities = 4/24 (16%), Positives = 6/24 (25%), Gaps = 1/24 (4%)
Query: 332 RIGRTDGHFKSVWFSNRRAKWRRH 355
G K +W N +
Sbjct: 57 ETGVRRQVLK-IWMHNNKNSGPSS 79
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 50.5 bits (121), Expect = 3e-09
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSH---YPCVSTRERLAAKTSLSEARVQ 277
+ R + + + YP ++++AA+T+L+ +V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
Score = 24.7 bits (54), Expect = 4.5
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 342 SVWFSNRRAK 351
+ WF N R +
Sbjct: 50 NNWFINARRR 59
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 49.4 bits (118), Expect = 9e-09
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 234 RNRTTFSPSQLDELEKEFDK-SHYPCVSTRERLAAKTSLSEARVQ 277
++ D LEK F + YP + L+ + S ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
Score = 28.6 bits (64), Expect = 0.23
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 342 SVWFSNRRAKWR 353
WF +RR + +
Sbjct: 47 QCWFRHRRNQDK 58
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 48.8 bits (117), Expect = 1e-08
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 89 IIEGVCTNATAPSVSSINRILRNR 112
+ E VC N T PSVSSINRI+R +
Sbjct: 38 LAERVCDNDTVPSVSSINRIIRTK 61
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 48.2 bits (115), Expect = 2e-08
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 233 RRNRTTFSPSQLDELEKEFDK---SHYPCVSTRERLAAKTSLSEARVQ 277
R +R F+ + LE F K + Y E L TSLS +++
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
Score = 29.4 bits (66), Expect = 0.11
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 342 SVWFSNRRAKWRR 354
W SNRR K +
Sbjct: 46 KNWVSNRRRKEKT 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 46.6 bits (111), Expect = 7e-08
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 240 SPSQLDELEKEFDK-SHYPCVSTRERLAAKTSLSEARVQ 277
+ LEK F + +P E L+ + +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
Score = 31.2 bits (71), Expect = 0.018
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 343 VWFSNRRAKWRR 354
WF RR + +
Sbjct: 40 RWFRQRRNQEKP 51
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 40.5 bits (94), Expect = 2e-05
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+ + QL L+ F S RL A+T L+ +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49
Score = 32.0 bits (72), Expect = 0.019
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 332 RIGRTDGHFKSVWFSNRRAKWRRHQRMNLLKSRRANAA 369
+ T WF+ ++ + + A ++
Sbjct: 40 QTKLTRREID-AWFTEKKKSKALKEEKMEIDESNAGSS 76
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 37.0 bits (85), Expect = 4e-04
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 233 RRNRTTFSPSQLDELEKEFDKSHYPCVSTRERLAAKTSLSEARVQ 277
+ + QL L+ F + + ++L T L +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48
Score = 27.8 bits (61), Expect = 0.53
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 343 VWFSNRRAKWRRHQ 356
WF + R + Q
Sbjct: 49 QWFGDTRYALKHGQ 62
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 38.0 bits (88), Expect = 4e-04
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 91 EGVCTNATAPSVSSINRIL 109
EGVC +TAPSVS+I+R++
Sbjct: 105 EGVCDRSTAPSVSAISRLV 123
>d1n1ca_ a.184.1.1 (A:) TorA specific chaperone TorD {Shewanella
massilia [TaxId: 76854]}
Length = 207
Score = 26.1 bits (57), Expect = 7.9
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 79 ETVPHIFPMKIIEGVCTNATAPSVSSINRILRNRAAERAAAEFARAAGYGIYHTAHPYAS 138
E + +E T + S++N I + A AA++ G H+A PYAS
Sbjct: 33 EAAQQFWEQLSLEANFTQSVDKIRSTLNGIKDDEALLELAADYCGLFLVGTKHSASPYAS 92
Query: 139 FH 140
+
Sbjct: 93 LY 94
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 25.5 bits (56), Expect = 8.8
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 16/67 (23%)
Query: 77 VLETVPHIFPMKIIEGVCTNATAP------------SVSSINRILRNRAAER----AAAE 120
V E V FP I + +A + V I+ +L+ + +
Sbjct: 65 VEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVY 124
Query: 121 FARAAGY 127
Y
Sbjct: 125 IVAVLEY 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.427
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,724,480
Number of extensions: 81923
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 73
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)