Query psy12777
Match_columns 697
No_of_seqs 271 out of 1906
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:25:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00190 Tryp_SPc Trypsin-like 100.0 6.1E-32 1.3E-36 264.4 21.0 189 391-695 1-190 (232)
2 KOG3627|consensus 100.0 6.5E-31 1.4E-35 266.6 19.2 195 388-695 10-210 (256)
3 smart00020 Tryp_SPc Trypsin-li 100.0 2.6E-29 5.7E-34 247.3 20.5 190 390-695 1-191 (229)
4 PF00089 Trypsin: Trypsin; In 100.0 4.5E-28 9.8E-33 235.7 20.4 183 391-695 1-184 (220)
5 COG5640 Secreted trypsin-like 99.8 1.1E-18 2.3E-23 185.2 10.3 106 388-496 30-136 (413)
6 PF09342 DUF1986: Domain of un 99.2 1.9E-10 4.1E-15 118.0 11.3 116 399-525 13-131 (267)
7 PF03761 DUF316: Domain of unk 99.1 1E-09 2.2E-14 114.6 14.0 143 378-523 28-199 (282)
8 cd00190 Tryp_SPc Trypsin-like 98.6 5E-08 1.1E-12 95.6 4.3 47 563-612 1-47 (232)
9 PF00089 Trypsin: Trypsin; In 98.5 8.1E-08 1.8E-12 93.6 4.9 46 563-611 1-46 (220)
10 smart00020 Tryp_SPc Trypsin-li 98.5 1.3E-07 2.9E-12 93.3 4.4 48 562-612 1-48 (229)
11 KOG3627|consensus 98.4 3.4E-07 7.3E-12 93.3 4.8 51 560-612 10-60 (256)
12 COG5640 Secreted trypsin-like 98.0 1.4E-06 3.1E-11 93.9 1.2 138 556-697 26-236 (413)
13 COG3591 V8-like Glu-specific e 97.1 0.0016 3.6E-08 68.3 8.2 123 397-525 44-171 (251)
14 PF13365 Trypsin_2: Trypsin-li 96.9 0.0027 5.8E-08 56.5 6.9 21 420-440 1-22 (120)
15 TIGR02037 degP_htrA_DO peripla 96.1 0.032 6.9E-07 62.5 10.4 85 417-525 57-142 (428)
16 PF09342 DUF1986: Domain of un 94.9 0.028 6E-07 58.9 4.3 38 571-612 13-50 (267)
17 PF03761 DUF316: Domain of unk 94.9 0.036 7.9E-07 58.1 5.2 51 560-610 39-89 (282)
18 TIGR02038 protease_degS peripl 94.2 0.5 1.1E-05 52.0 12.3 83 418-525 78-161 (351)
19 PRK10139 serine endoprotease; 93.5 0.41 8.8E-06 54.6 10.2 82 418-523 90-173 (455)
20 PRK10942 serine endoprotease; 93.1 0.47 1E-05 54.3 10.0 82 418-523 111-194 (473)
21 PRK10898 serine endoprotease; 93.0 1.1 2.4E-05 49.3 12.4 82 418-524 78-160 (353)
22 COG3591 V8-like Glu-specific e 85.9 0.7 1.5E-05 49.0 3.5 38 573-611 48-85 (251)
23 PF13365 Trypsin_2: Trypsin-li 85.9 0.46 1E-05 42.1 1.9 21 592-612 1-22 (120)
24 PF05539 Pneumo_att_G: Pneumov 39.7 3.6E+02 0.0078 30.1 11.6 32 178-209 149-183 (408)
25 KOG0260|consensus 29.1 4.6E+02 0.0099 34.2 11.4 14 140-153 1327-1340(1605)
26 KOG1492|consensus 25.9 27 0.00058 36.6 0.5 27 164-193 297-323 (377)
27 PHA03291 envelope glycoprotein 20.8 2.4E+02 0.0053 31.8 6.5 16 481-496 336-351 (401)
No 1
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=100.00 E-value=6.1e-32 Score=264.38 Aligned_cols=189 Identities=42% Similarity=0.796 Sum_probs=160.8
Q ss_pred eeCCeeCCCCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEE
Q psy12777 391 IVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQI 470 (697)
Q Consensus 391 IVGG~~A~~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~ 470 (697)
|+||+.+..++|||+|.|+... ..+.|+|+||+++||||||||+.+.....+.|++|..+...... ..+.+.|.+
T Consensus 1 i~~G~~~~~~~~Pw~v~i~~~~---~~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~--~~~~~~v~~ 75 (232)
T cd00190 1 IVGGSEAKIGSFPWQVSLQYTG---GRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEG--GGQVIKVKK 75 (232)
T ss_pred CcCCeECCCCCCCCEEEEEccC---CcEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCCC--ceEEEEEEE
Confidence 6899999999999999998632 46889999999999999999998755677899999887765332 457889999
Q ss_pred EEECCCCCCCCCCCceEEEecCcccccCCCeeeeecCCCCC-CCCCCEEEEEeccccCCCCccccCCCCccccccccccc
Q psy12777 471 VASHPQFDPRTFEYDLALLRFYEPVKFQPNIIPICVPEDDT-NFVGTSAHVTGWGRLYEGRFRRSYGHPATRQEMATCWN 549 (697)
Q Consensus 471 IiiHP~Yn~~t~~nDIALLrL~~PV~fs~~V~PICLP~~~~-~~~G~~c~VtGWG~t~~g~~~~s~~~p~~~~~s~~C~~ 549 (697)
+++||+|+.....+|||||||++++.++.+++|||||.... ...+..+.++|||....
T Consensus 76 ~~~hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~--------------------- 134 (232)
T cd00190 76 VIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSE--------------------- 134 (232)
T ss_pred EEECCCCCCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCC---------------------
Confidence 99999999888999999999999999999999999998852 23589999999999765
Q ss_pred ccCCCcccCCCcceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeecccccccccceeeeeecccccccc
Q psy12777 550 HFLGNRILFPSSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDLWSQIIPIIQNCRRRESN 629 (697)
Q Consensus 550 ~~~~~~~~~p~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~~~~~i~~~~~~~~~~~~ 629 (697)
T Consensus 135 -------------------------------------------------------------------------------- 134 (232)
T cd00190 135 -------------------------------------------------------------------------------- 134 (232)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCceEEEEeeechhHHHHHhhhCCcccCcCCCeEEEeeCCCCCCCCcccCCCCC
Q psy12777 630 LWKMALADGPLPSVLQEVSVPVINNSLCETMYRAAGFIEHIPEIFICAGWRKGSFDSCEEHARDGT 695 (697)
Q Consensus 630 ~Wg~~~~~~~~s~vLq~~~V~vis~~~C~~~y~~~~~~~~i~~~~ICAG~~~g~~dtCqGDSGgg~ 695 (697)
....+..|+++.+++++.+.|+..+.. ...+.+++||++...+..+.|.||||||+
T Consensus 135 -------~~~~~~~~~~~~~~~~~~~~C~~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl 190 (232)
T cd00190 135 -------GGPLPDVLQEVNVPIVSNAECKRAYSY---GGTITDNMLCAGGLEGGKDACQGDSGGPL 190 (232)
T ss_pred -------CCCCCceeeEEEeeeECHHHhhhhccC---cccCCCceEeeCCCCCCCccccCCCCCcE
Confidence 123457899999999999999988752 23578999999976557899999999997
No 2
>KOG3627|consensus
Probab=99.97 E-value=6.5e-31 Score=266.56 Aligned_cols=195 Identities=42% Similarity=0.763 Sum_probs=158.9
Q ss_pred CCCeeCCeeCCCCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCC-CCCceEEEEccccCCCCCCCCC-cEE
Q psy12777 388 SSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDV-PPSDLLLRLGEHDLSTEEEPYG-YQE 465 (697)
Q Consensus 388 ~~RIVGG~~A~~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~-~~~~l~V~LG~~dl~~~~~~~~-~q~ 465 (697)
..||+||.++..+++||+|+|..+.. ..|+|||+||+++||||||||+... .. .+.|++|.+.......... ...
T Consensus 10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~--~~~~Cggsli~~~~vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~ 86 (256)
T KOG3627|consen 10 EGRIVGGTEAEPGSFPWQVSLQYGGN--GRHLCGGSLISPRWVLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLV 86 (256)
T ss_pred cCCEeCCccCCCCCCCCEEEEEECCC--cceeeeeEEeeCCEEEEChhhCCCCCCc-ceEEEECccccccccccCchhhh
Confidence 57999999999999999999987421 3679999999999999999999863 22 7889999886655422111 245
Q ss_pred EEEEEEEECCCCCCCCCC-CceEEEecCcccccCCCeeeeecCCCCC---CCCCCEEEEEeccccCCCCccccCCCCccc
Q psy12777 466 RRVQIVASHPQFDPRTFE-YDLALLRFYEPVKFQPNIIPICVPEDDT---NFVGTSAHVTGWGRLYEGRFRRSYGHPATR 541 (697)
Q Consensus 466 ~~V~~IiiHP~Yn~~t~~-nDIALLrL~~PV~fs~~V~PICLP~~~~---~~~G~~c~VtGWG~t~~g~~~~s~~~p~~~ 541 (697)
..|.++++||+|+..... ||||||+|.+++.|+++|+|||||.... ...+..|.++|||++..+
T Consensus 87 ~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~------------ 154 (256)
T KOG3627|consen 87 GDVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESG------------ 154 (256)
T ss_pred ceeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCC------------
Confidence 558888999999988877 9999999999999999999999986544 224689999999998762
Q ss_pred ccccccccccCCCcccCCCcceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeecccccccccceeeeee
Q psy12777 542 QEMATCWNHFLGNRILFPSSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDLWSQIIPIIQ 621 (697)
Q Consensus 542 ~~s~~C~~~~~~~~~~~p~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~~~~~i~~~~ 621 (697)
T Consensus 155 -------------------------------------------------------------------------------- 154 (256)
T KOG3627|consen 155 -------------------------------------------------------------------------------- 154 (256)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCCCCCCceEEEEeeechhHHHHHhhhCCcccCcCCCeEEEeeCCCCCCCCcccCCCCC
Q psy12777 622 NCRRRESNLWKMALADGPLPSVLQEVSVPVINNSLCETMYRAAGFIEHIPEIFICAGWRKGSFDSCEEHARDGT 695 (697)
Q Consensus 622 ~~~~~~~~~Wg~~~~~~~~s~vLq~~~V~vis~~~C~~~y~~~~~~~~i~~~~ICAG~~~g~~dtCqGDSGgg~ 695 (697)
....+..||++.|+++++++|+..+.... .+.+.||||+...++.++|+|||||++
T Consensus 155 ---------------~~~~~~~L~~~~v~i~~~~~C~~~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGGPL 210 (256)
T KOG3627|consen 155 ---------------GGPLPDTLQEVDVPIISNSECRRAYGGLG---TITDTMLCAGGPEGGKDACQGDSGGPL 210 (256)
T ss_pred ---------------CCCCCceeEEEEEeEcChhHhcccccCcc---ccCCCEEeeCccCCCCccccCCCCCeE
Confidence 13457889999999999999999875321 466789999976778899999999986
No 3
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=99.97 E-value=2.6e-29 Score=247.34 Aligned_cols=190 Identities=43% Similarity=0.816 Sum_probs=159.1
Q ss_pred CeeCCeeCCCCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEE
Q psy12777 390 RIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQ 469 (697)
Q Consensus 390 RIVGG~~A~~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~ 469 (697)
||+||+.+..++|||+|.|+... ..+.|+|+||++++|||||||+.......+.|++|.++.....+ .+.+.|.
T Consensus 1 ~~~~G~~~~~~~~Pw~~~i~~~~---~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~~~~~~~~---~~~~~v~ 74 (229)
T smart00020 1 RIVGGSEANIGSFPWQVSLQYRG---GRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSHDLSSGEE---GQVIKVS 74 (229)
T ss_pred CccCCCcCCCCCCCcEEEEEEcC---CCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcccCCCCCC---ceEEeeE
Confidence 68999999999999999997631 36789999999999999999998755567999999887655332 3778999
Q ss_pred EEEECCCCCCCCCCCceEEEecCcccccCCCeeeeecCCCCCC-CCCCEEEEEeccccCCCCccccCCCCcccccccccc
Q psy12777 470 IVASHPQFDPRTFEYDLALLRFYEPVKFQPNIIPICVPEDDTN-FVGTSAHVTGWGRLYEGRFRRSYGHPATRQEMATCW 548 (697)
Q Consensus 470 ~IiiHP~Yn~~t~~nDIALLrL~~PV~fs~~V~PICLP~~~~~-~~G~~c~VtGWG~t~~g~~~~s~~~p~~~~~s~~C~ 548 (697)
++++||+|+.....+|||||+|++++.+++.++||||+..... ..+..+.++|||.....
T Consensus 75 ~~~~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~------------------- 135 (229)
T smart00020 75 KVIIHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEG------------------- 135 (229)
T ss_pred EEEECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCC-------------------
Confidence 9999999998889999999999999999999999999987332 25899999999987531
Q ss_pred cccCCCcccCCCcceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeecccccccccceeeeeeccccccc
Q psy12777 549 NHFLGNRILFPSSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDLWSQIIPIIQNCRRRES 628 (697)
Q Consensus 549 ~~~~~~~~~~p~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~~~~~i~~~~~~~~~~~ 628 (697)
T Consensus 136 -------------------------------------------------------------------------------- 135 (229)
T smart00020 136 -------------------------------------------------------------------------------- 135 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCceEEEEeeechhHHHHHhhhCCcccCcCCCeEEEeeCCCCCCCCcccCCCCC
Q psy12777 629 NLWKMALADGPLPSVLQEVSVPVINNSLCETMYRAAGFIEHIPEIFICAGWRKGSFDSCEEHARDGT 695 (697)
Q Consensus 629 ~~Wg~~~~~~~~s~vLq~~~V~vis~~~C~~~y~~~~~~~~i~~~~ICAG~~~g~~dtCqGDSGgg~ 695 (697)
.......|+...+.+++.+.|...+... ..+.+.+||++......+.|.|||||++
T Consensus 136 --------~~~~~~~~~~~~~~~~~~~~C~~~~~~~---~~~~~~~~C~~~~~~~~~~c~gdsG~pl 191 (229)
T smart00020 136 --------AGSLPDTLQEVNVPIVSNATCRRAYSGG---GAITDNMLCAGGLEGGKDACQGDSGGPL 191 (229)
T ss_pred --------CCcCCCEeeEEEEEEeCHHHhhhhhccc---cccCCCcEeecCCCCCCcccCCCCCCee
Confidence 2344568999999999999999876421 2478899999976556889999999986
No 4
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=99.96 E-value=4.5e-28 Score=235.71 Aligned_cols=183 Identities=38% Similarity=0.751 Sum_probs=155.0
Q ss_pred eeCCeeCCCCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEE
Q psy12777 391 IVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQI 470 (697)
Q Consensus 391 IVGG~~A~~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~ 470 (697)
|+||..+..++|||+|.|++.. ..++|+|+||+++||||||||+.. ...+.+++|...+..... ..+.+.|.+
T Consensus 1 i~~g~~~~~~~~p~~v~i~~~~---~~~~C~G~li~~~~vLTaahC~~~--~~~~~v~~g~~~~~~~~~--~~~~~~v~~ 73 (220)
T PF00089_consen 1 IVGGDPASPGEFPWVVSIRYSN---GRFFCTGTLISPRWVLTAAHCVDG--ASDIKVRLGTYSIRNSDG--SEQTIKVSK 73 (220)
T ss_dssp SBSSEECGTTSSTTEEEEEETT---TEEEEEEEEEETTEEEEEGGGHTS--GGSEEEEESESBTTSTTT--TSEEEEEEE
T ss_pred CCCCEECCCCCCCeEEEEeeCC---CCeeEeEEeccccccccccccccc--cccccccccccccccccc--ccccccccc
Confidence 7899999999999999998732 188999999999999999999986 457889999854444332 358899999
Q ss_pred EEECCCCCCCCCCCceEEEecCcccccCCCeeeeecCCCCCC-CCCCEEEEEeccccCCCCccccCCCCccccccccccc
Q psy12777 471 VASHPQFDPRTFEYDLALLRFYEPVKFQPNIIPICVPEDDTN-FVGTSAHVTGWGRLYEGRFRRSYGHPATRQEMATCWN 549 (697)
Q Consensus 471 IiiHP~Yn~~t~~nDIALLrL~~PV~fs~~V~PICLP~~~~~-~~G~~c~VtGWG~t~~g~~~~s~~~p~~~~~s~~C~~ 549 (697)
+++||+|+.....+|||||+|++++.+.+.++|+||+..... ..+..+.++|||.....
T Consensus 74 ~~~h~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~-------------------- 133 (220)
T PF00089_consen 74 IIIHPKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDN-------------------- 133 (220)
T ss_dssp EEEETTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTT--------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------------
Confidence 999999998888999999999999999999999999995432 35899999999997651
Q ss_pred ccCCCcccCCCcceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeecccccccccceeeeeecccccccc
Q psy12777 550 HFLGNRILFPSSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDLWSQIIPIIQNCRRRESN 629 (697)
Q Consensus 550 ~~~~~~~~~p~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~~~~~i~~~~~~~~~~~~ 629 (697)
T Consensus 134 -------------------------------------------------------------------------------- 133 (220)
T PF00089_consen 134 -------------------------------------------------------------------------------- 133 (220)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCceEEEEeeechhHHHHHhhhCCcccCcCCCeEEEeeCCCCCCCCcccCCCCC
Q psy12777 630 LWKMALADGPLPSVLQEVSVPVINNSLCETMYRAAGFIEHIPEIFICAGWRKGSFDSCEEHARDGT 695 (697)
Q Consensus 630 ~Wg~~~~~~~~s~vLq~~~V~vis~~~C~~~y~~~~~~~~i~~~~ICAG~~~g~~dtCqGDSGgg~ 695 (697)
+ ....|+...+.+++.+.|+..+. ..+.+.+||++.. +..+.|+|||||++
T Consensus 134 --------~-~~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~~~c~~~~-~~~~~~~g~sG~pl 184 (220)
T PF00089_consen 134 --------G-YSSNLQSVTVPVVSRKTCRSSYN-----DNLTPNMICAGSS-GSGDACQGDSGGPL 184 (220)
T ss_dssp --------S-BTSBEEEEEEEEEEHHHHHHHTT-----TTSTTTEEEEETT-SSSBGGTTTTTSEE
T ss_pred --------c-ccccccccccccccccccccccc-----ccccccccccccc-cccccccccccccc
Confidence 2 45689999999999999998753 2378899999965 66899999999986
No 5
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=185.16 Aligned_cols=106 Identities=25% Similarity=0.436 Sum_probs=83.8
Q ss_pred CCCeeCCeeCCCCCcceEEEEEEEecC-CceeeeeEEEeeCcceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEE
Q psy12777 388 SSRIVGGEKATFGKWPWQISLRQWIRS-TYLHKCGAALFNENWAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQER 466 (697)
Q Consensus 388 ~~RIVGG~~A~~GewPW~VsL~~~~~~-~~~~~CGGTLIS~rwVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~ 466 (697)
..||+||..|..++||++|+|..+.+. -...+|||++|..|||||||||+....+....+..+..+++.... .+..
T Consensus 30 s~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~Sq---~~rg 106 (413)
T COG5640 30 SSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSSQ---AERG 106 (413)
T ss_pred ceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEeccccccc---ccCc
Confidence 569999999999999999999765543 234689999999999999999998654333344444445544332 4566
Q ss_pred EEEEEEECCCCCCCCCCCceEEEecCcccc
Q psy12777 467 RVQIVASHPQFDPRTFEYDLALLRFYEPVK 496 (697)
Q Consensus 467 ~V~~IiiHP~Yn~~t~~nDIALLrL~~PV~ 496 (697)
.|..++.|..|...++.||||+++|.++..
T Consensus 107 ~vr~i~~~efY~~~n~~ND~Av~~l~~~a~ 136 (413)
T COG5640 107 HVRTIYVHEFYSPGNLGNDIAVLELARAAS 136 (413)
T ss_pred ceEEEeeecccccccccCcceeeccccccc
Confidence 799999999999999999999999998764
No 6
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=99.15 E-value=1.9e-10 Score=117.95 Aligned_cols=116 Identities=19% Similarity=0.359 Sum_probs=89.8
Q ss_pred CCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCCCC--CceEEEEccccCCCCCCCCCcEEEEEEEEEECCC
Q psy12777 399 FGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDVPP--SDLLLRLGEHDLSTEEEPYGYQERRVQIVASHPQ 476 (697)
Q Consensus 399 ~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~~~--~~l~V~LG~~dl~~~~~~~~~q~~~V~~IiiHP~ 476 (697)
.-.|||.|.|+. ++.+.|.|.||.+.|||++-.|+.+... .-+.|.+|.......-+....|+++|..+..=|
T Consensus 13 ~y~WPWlA~IYv----dG~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~- 87 (267)
T PF09342_consen 13 DYHWPWLADIYV----DGRYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP- 87 (267)
T ss_pred cccCcceeeEEE----cCeEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeecc-
Confidence 346999999987 6789999999999999999999987543 456788887763332233356888887764332
Q ss_pred CCCCCCCCceEEEecCcccccCCCeeeeecCCCCCC-CCCCEEEEEeccc
Q psy12777 477 FDPRTFEYDLALLRFYEPVKFQPNIIPICVPEDDTN-FVGTSAHVTGWGR 525 (697)
Q Consensus 477 Yn~~t~~nDIALLrL~~PV~fs~~V~PICLP~~~~~-~~G~~c~VtGWG~ 525 (697)
+.+++||+|++|+.|+.+|+|+.||..... .....|..+|-..
T Consensus 88 ------~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~ 131 (267)
T PF09342_consen 88 ------ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD 131 (267)
T ss_pred ------ccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence 469999999999999999999999974332 2467999998654
No 7
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=99.10 E-value=1e-09 Score=114.57 Aligned_cols=143 Identities=21% Similarity=0.306 Sum_probs=90.7
Q ss_pred cccCCCcCC-CCCCeeCCeeCCCCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCCCCCce---------EE
Q psy12777 378 KEVCGRRLF-PSSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDVPPSDL---------LL 447 (697)
Q Consensus 378 ~~~CG~~~~-~~~RIVGG~~A~~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~~~~~l---------~V 447 (697)
...||+... ...++..|..+..++.||+|.+..........+++|+|||+||||||+||+..... .| ..
T Consensus 28 l~~CG~~~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~-~W~~~~~~~~~~C 106 (282)
T PF03761_consen 28 LETCGKKKLPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKS-KWLNGEEFDNKKC 106 (282)
T ss_pred HHhcCCCCCCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEeccc-ccccCccccccee
Confidence 578996543 35568899999999999999998754444456789999999999999999974211 11 00
Q ss_pred EEccccCCCCC--------------CCCCcEEEEEEEEEEC----CCCCCCCCCCceEEEecCcccccCCCeeeeecCCC
Q psy12777 448 RLGEHDLSTEE--------------EPYGYQERRVQIVASH----PQFDPRTFEYDLALLRFYEPVKFQPNIIPICVPED 509 (697)
Q Consensus 448 ~LG~~dl~~~~--------------~~~~~q~~~V~~IiiH----P~Yn~~t~~nDIALLrL~~PV~fs~~V~PICLP~~ 509 (697)
.-+..++.... .........|.++++- ...+.....++++||+|+++ +...+.|+||+.+
T Consensus 107 ~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~ 184 (282)
T PF03761_consen 107 EGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLADS 184 (282)
T ss_pred eCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeCCC
Confidence 00000000000 0001122445555441 11123345689999999999 7888999999987
Q ss_pred CCCC-CCCEEEEEec
Q psy12777 510 DTNF-VGTSAHVTGW 523 (697)
Q Consensus 510 ~~~~-~G~~c~VtGW 523 (697)
.... .++...+.|+
T Consensus 185 ~~~~~~~~~~~~yg~ 199 (282)
T PF03761_consen 185 STNWEKGDEVDVYGF 199 (282)
T ss_pred ccccccCceEEEeec
Confidence 6543 3566666665
No 8
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=98.56 E-value=5e-08 Score=95.64 Aligned_cols=47 Identities=47% Similarity=0.898 Sum_probs=41.3
Q ss_pred eeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeeccccccc
Q psy12777 563 IVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDL 612 (697)
Q Consensus 563 I~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~ 612 (697)
|++|+.+..+.|||++.|... ...++|+|+||+++||||||||+.+.
T Consensus 1 i~~G~~~~~~~~Pw~v~i~~~---~~~~~C~GtlIs~~~VLTaAhC~~~~ 47 (232)
T cd00190 1 IVGGSEAKIGSFPWQVSLQYT---GGRHFCGGSLISPRWVLTAAHCVYSS 47 (232)
T ss_pred CcCCeECCCCCCCCEEEEEcc---CCcEEEEEEEeeCCEEEECHHhcCCC
Confidence 679999999999999999741 16789999999999999999998763
No 9
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=98.53 E-value=8.1e-08 Score=93.62 Aligned_cols=46 Identities=41% Similarity=0.873 Sum_probs=41.4
Q ss_pred eeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeecccccc
Q psy12777 563 IVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVED 611 (697)
Q Consensus 563 I~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~ 611 (697)
|+||.++..++|||++.+.. + .+.++|.|+||+++||||||||+.+
T Consensus 1 i~~g~~~~~~~~p~~v~i~~--~-~~~~~C~G~li~~~~vLTaahC~~~ 46 (220)
T PF00089_consen 1 IVGGDPASPGEFPWVVSIRY--S-NGRFFCTGTLISPRWVLTAAHCVDG 46 (220)
T ss_dssp SBSSEECGTTSSTTEEEEEE--T-TTEEEEEEEEEETTEEEEEGGGHTS
T ss_pred CCCCEECCCCCCCeEEEEee--C-CCCeeEeEEeccccccccccccccc
Confidence 78999999999999999974 1 1288999999999999999999998
No 10
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=98.46 E-value=1.3e-07 Score=93.31 Aligned_cols=48 Identities=48% Similarity=0.920 Sum_probs=41.9
Q ss_pred ceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeeccccccc
Q psy12777 562 RIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDL 612 (697)
Q Consensus 562 rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~ 612 (697)
||++|+.+.++.|||++.+.. . ...++|+|+||++++|||||||+.+.
T Consensus 1 ~~~~G~~~~~~~~Pw~~~i~~-~--~~~~~C~GtlIs~~~VLTaahC~~~~ 48 (229)
T smart00020 1 RIVGGSEANIGSFPWQVSLQY-R--GGRHFCGGSLISPRWVLTAAHCVYGS 48 (229)
T ss_pred CccCCCcCCCCCCCcEEEEEE-c--CCCcEEEEEEecCCEEEECHHHcCCC
Confidence 689999999999999999963 1 14679999999999999999999863
No 11
>KOG3627|consensus
Probab=98.36 E-value=3.4e-07 Score=93.32 Aligned_cols=51 Identities=45% Similarity=0.841 Sum_probs=44.9
Q ss_pred CcceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeeccccccc
Q psy12777 560 SSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDL 612 (697)
Q Consensus 560 ~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~ 612 (697)
..||++|.++..+.+|||+.|..+.. ..++|||+||+++||||||||+.+.
T Consensus 10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~--~~~~Cggsli~~~~vltaaHC~~~~ 60 (256)
T KOG3627|consen 10 EGRIVGGTEAEPGSFPWQVSLQYGGN--GRHLCGGSLISPRWVLTAAHCVKGA 60 (256)
T ss_pred cCCEeCCccCCCCCCCCEEEEEECCC--cceeeeeEEeeCCEEEEChhhCCCC
Confidence 57999999999999999999985322 4679999999999999999999885
No 12
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.4e-06 Score=93.89 Aligned_cols=138 Identities=23% Similarity=0.341 Sum_probs=93.5
Q ss_pred ccCCCcceeCCcccCCCcccceEEEeeeeccccee-eeeeeEeeCcEEEeeccccccccc--------------------
Q psy12777 556 ILFPSSRIVGGEKATFGKWPWQISLRQWIRSTYLH-KCGAALFNENWAVTAAHCVEDLWS-------------------- 614 (697)
Q Consensus 556 ~~~p~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~-~CgGslI~~~~VLSAAHC~~~~~~-------------------- 614 (697)
+...+.||+||..|..|+||.++.|-.+++-...+ ||||++|+.|||||||||+.+...
T Consensus 26 ~devs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~Sq~~r 105 (413)
T COG5640 26 ADEVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSSQAER 105 (413)
T ss_pred ccccceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEecccccccccC
Confidence 33458999999999999999998887544432333 999999999999999999886421
Q ss_pred -ceeeeeeccc----------------------------cc---------------ccccccccccCCC---CC--CCce
Q psy12777 615 -QIIPIIQNCR----------------------------RR---------------ESNLWKMALADGP---LP--SVLQ 645 (697)
Q Consensus 615 -~~i~~~~~~~----------------------------~~---------------~~~~Wg~~~~~~~---~s--~vLq 645 (697)
++..++.||- .+ ....|++..+... .+ ..|+
T Consensus 106 g~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~ 185 (413)
T COG5640 106 GHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILH 185 (413)
T ss_pred cceEEEeeecccccccccCcceeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCccceee
Confidence 0111111110 00 0113777655432 23 3799
Q ss_pred EEEEeeechhHHHHHhhhCCcc---cCcCCCeEEEeeCCCCCCCCcccCCCCCCC
Q psy12777 646 EVSVPVINNSLCETMYRAAGFI---EHIPEIFICAGWRKGSFDSCEEHARDGTDW 697 (697)
Q Consensus 646 ~~~V~vis~~~C~~~y~~~~~~---~~i~~~~ICAG~~~g~~dtCqGDSGgg~~~ 697 (697)
++.|...+..+|.+.+...... ..++. ||||.. ..|+|||||||++-|
T Consensus 186 e~~v~fv~~stc~~~~g~an~~dg~~~lT~--~cag~~--~~daCqGDSGGPi~~ 236 (413)
T COG5640 186 EVAVLFVPLSTCAQYKGCANASDGATGLTG--FCAGRP--PKDACQGDSGGPIFH 236 (413)
T ss_pred eeeeeeechHHhhhhccccccCCCCCCccc--eecCCC--CcccccCCCCCceEE
Confidence 9999999999999877311111 12222 999954 489999999999865
No 13
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0016 Score=68.32 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=71.8
Q ss_pred CCCCCcceEEEEEEEecCCceeeeeEEEeeCcceeeecccccCCCCC--ceEEEE-ccccCCCCCCCCCcEEEEEEEEEE
Q psy12777 397 ATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDVPPS--DLLLRL-GEHDLSTEEEPYGYQERRVQIVAS 473 (697)
Q Consensus 397 A~~GewPW~VsL~~~~~~~~~~~CGGTLIS~rwVLTAAHC~~~~~~~--~l~V~L-G~~dl~~~~~~~~~q~~~V~~Iii 473 (697)
.....|||-+-..+... .+..-|+++||+++-||||+||+...... ++.+.. |... ... +.-.+....+..
T Consensus 44 ~dt~~~Py~av~~~~~~-tG~~~~~~~lI~pntvLTa~Hc~~s~~~G~~~~~~~p~g~~~---~~~--~~~~~~~~~~~~ 117 (251)
T COG3591 44 TDTTQFPYSAVVQFEAA-TGRLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVNS---DGG--PFYGITKIEIRV 117 (251)
T ss_pred ccCCCCCcceeEEeecC-CCcceeeEEEEcCceEEEeeeEEecCCCChhhhhhcCCcccC---CCC--CCCceeeEEEEe
Confidence 34467999776654332 34556788999999999999999864322 222222 2111 111 111122222222
Q ss_pred CCC--CCCCCCCCceEEEecCcccccCCCeeeeecCCCCCCCCCCEEEEEeccc
Q psy12777 474 HPQ--FDPRTFEYDLALLRFYEPVKFQPNIIPICVPEDDTNFVGTSAHVTGWGR 525 (697)
Q Consensus 474 HP~--Yn~~t~~nDIALLrL~~PV~fs~~V~PICLP~~~~~~~G~~c~VtGWG~ 525 (697)
.+. |.......|+..+.|+....+.+.+...-++.......++...++|+=.
T Consensus 118 ~~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~i~v~GYP~ 171 (251)
T COG3591 118 YPGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPG 171 (251)
T ss_pred cCCceeccCCceeeccHHHhccCCCccccccccccccccccccCceeEEEeccC
Confidence 332 3455566788888887666666666655566555555677788999733
No 14
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=96.91 E-value=0.0027 Score=56.54 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.1
Q ss_pred eeEEEeeCc-ceeeecccccCC
Q psy12777 420 CGAALFNEN-WAVTAAHCVEDV 440 (697)
Q Consensus 420 CGGTLIS~r-wVLTAAHC~~~~ 440 (697)
|.|.||+++ +|||||||+...
T Consensus 1 GTGf~i~~~g~ilT~~Hvv~~~ 22 (120)
T PF13365_consen 1 GTGFLIGPDGYILTAAHVVEDW 22 (120)
T ss_dssp EEEEEEETTTEEEEEHHHHTCC
T ss_pred CEEEEEcCCceEEEchhheecc
Confidence 689999999 999999999864
No 15
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.08 E-value=0.032 Score=62.51 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=57.5
Q ss_pred eeeeeEEEeeCc-ceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEEEEECCCCCCCCCCCceEEEecCccc
Q psy12777 417 LHKCGAALFNEN-WAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQIVASHPQFDPRTFEYDLALLRFYEPV 495 (697)
Q Consensus 417 ~~~CGGTLIS~r-wVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~IiiHP~Yn~~t~~nDIALLrL~~PV 495 (697)
...+.|.+|++. +|||++|++.+ ...+.|.+.. ...+..+-+..++. +||||||++.+
T Consensus 57 ~~~GSGfii~~~G~IlTn~Hvv~~--~~~i~V~~~~-----------~~~~~a~vv~~d~~-------~DlAllkv~~~- 115 (428)
T TIGR02037 57 RGLGSGVIISADGYILTNNHVVDG--ADEITVTLSD-----------GREFKAKLVGKDPR-------TDIAVLKIDAK- 115 (428)
T ss_pred cceeeEEEECCCCEEEEcHHHcCC--CCeEEEEeCC-----------CCEEEEEEEEecCC-------CCEEEEEecCC-
Confidence 346999999976 99999999976 3456665531 12233443334443 59999999754
Q ss_pred ccCCCeeeeecCCCCCCCCCCEEEEEeccc
Q psy12777 496 KFQPNIIPICVPEDDTNFVGTSAHVTGWGR 525 (697)
Q Consensus 496 ~fs~~V~PICLP~~~~~~~G~~c~VtGWG~ 525 (697)
..+.++.|........|+.+++.|+-.
T Consensus 116 ---~~~~~~~l~~~~~~~~G~~v~aiG~p~ 142 (428)
T TIGR02037 116 ---KNLPVIKLGDSDKLRVGDWVLAIGNPF 142 (428)
T ss_pred ---CCceEEEccCCCCCCCCCEEEEEECCC
Confidence 345677776554444699999999743
No 16
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=94.93 E-value=0.028 Score=58.93 Aligned_cols=38 Identities=18% Similarity=0.602 Sum_probs=34.2
Q ss_pred CCcccceEEEeeeecccceeeeeeeEeeCcEEEeeccccccc
Q psy12777 571 FGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVEDL 612 (697)
Q Consensus 571 ~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~~ 612 (697)
-..|||.|.++. .|.++|.|.||++.|||++-.|+.+.
T Consensus 13 ~y~WPWlA~IYv----dG~~~CsgvLlD~~WlLvsssCl~~I 50 (267)
T PF09342_consen 13 DYHWPWLADIYV----DGRYWCSGVLLDPHWLLVSSSCLRGI 50 (267)
T ss_pred cccCcceeeEEE----cCeEEEEEEEeccceEEEeccccCCc
Confidence 356999999984 78899999999999999999999874
No 17
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=94.88 E-value=0.036 Score=58.10 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=44.4
Q ss_pred CcceeCCcccCCCcccceEEEeeeecccceeeeeeeEeeCcEEEeeccccc
Q psy12777 560 SSRIVGGEKATFGKWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVE 610 (697)
Q Consensus 560 ~~rI~~g~~~~~g~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~ 610 (697)
..++.+|..+..+..||.+.+.........+++.|+||++|-||||+||+-
T Consensus 39 ~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~ 89 (282)
T PF03761_consen 39 PSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVM 89 (282)
T ss_pred cccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEE
Confidence 455688999999999999999876666667889999999999999999976
No 18
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=94.22 E-value=0.5 Score=51.98 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=52.7
Q ss_pred eeeeEEEeeCc-ceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEEEEECCCCCCCCCCCceEEEecCcccc
Q psy12777 418 HKCGAALFNEN-WAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQIVASHPQFDPRTFEYDLALLRFYEPVK 496 (697)
Q Consensus 418 ~~CGGTLIS~r-wVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~IiiHP~Yn~~t~~nDIALLrL~~PV~ 496 (697)
....|.+|+++ +|||++|.+.+ ...+.|.+.. ...+..+-+..++ .+||||||++..-
T Consensus 78 ~~GSG~vi~~~G~IlTn~HVV~~--~~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvlkv~~~~- 136 (351)
T TIGR02038 78 GLGSGVIMSKEGYILTNYHVIKK--ADQIVVALQD-----------GRKFEAELVGSDP-------LTDLAVLKIEGDN- 136 (351)
T ss_pred ceEEEEEEeCCeEEEecccEeCC--CCEEEEEECC-----------CCEEEEEEEEecC-------CCCEEEEEecCCC-
Confidence 35889999876 99999999975 3456665421 1223344343443 3699999997531
Q ss_pred cCCCeeeeecCCCCCCCCCCEEEEEeccc
Q psy12777 497 FQPNIIPICVPEDDTNFVGTSAHVTGWGR 525 (697)
Q Consensus 497 fs~~V~PICLP~~~~~~~G~~c~VtGWG~ 525 (697)
+.++.|-.......|+.+.+.|+..
T Consensus 137 ----~~~~~l~~s~~~~~G~~V~aiG~P~ 161 (351)
T TIGR02038 137 ----LPTIPVNLDRPPHVGDVVLAIGNPY 161 (351)
T ss_pred ----CceEeccCcCccCCCCEEEEEeCCC
Confidence 3344453333333699999999853
No 19
>PRK10139 serine endoprotease; Provisional
Probab=93.46 E-value=0.41 Score=54.61 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=54.0
Q ss_pred eeeeEEEeeC--cceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEEEEECCCCCCCCCCCceEEEecCccc
Q psy12777 418 HKCGAALFNE--NWAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQIVASHPQFDPRTFEYDLALLRFYEPV 495 (697)
Q Consensus 418 ~~CGGTLIS~--rwVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~IiiHP~Yn~~t~~nDIALLrL~~PV 495 (697)
....|.+|++ .+|||.+|.+.+ ...+.|.+.. ...+..+-+...+ ..||||||++.+-
T Consensus 90 ~~GSG~ii~~~~g~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vvg~D~-------~~DlAvlkv~~~~ 149 (455)
T PRK10139 90 GLGSGVIIDAAKGYVLTNNHVINQ--AQKISIQLND-----------GREFDAKLIGSDD-------QSDIALLQIQNPS 149 (455)
T ss_pred ceEEEEEEECCCCEEEeChHHhCC--CCEEEEEECC-----------CCEEEEEEEEEcC-------CCCEEEEEecCCC
Confidence 3588999974 699999999976 4567777631 1223333333333 3699999997542
Q ss_pred ccCCCeeeeecCCCCCCCCCCEEEEEec
Q psy12777 496 KFQPNIIPICVPEDDTNFVGTSAHVTGW 523 (697)
Q Consensus 496 ~fs~~V~PICLP~~~~~~~G~~c~VtGW 523 (697)
...++.|-.......|+.+.+.|.
T Consensus 150 ----~l~~~~lg~s~~~~~G~~V~aiG~ 173 (455)
T PRK10139 150 ----KLTQIAIADSDKLRVGDFAVAVGN 173 (455)
T ss_pred ----CCceeEecCccccCCCCEEEEEec
Confidence 344666655444336888888886
No 20
>PRK10942 serine endoprotease; Provisional
Probab=93.12 E-value=0.47 Score=54.34 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=52.1
Q ss_pred eeeeEEEeeC--cceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEEEEECCCCCCCCCCCceEEEecCccc
Q psy12777 418 HKCGAALFNE--NWAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQIVASHPQFDPRTFEYDLALLRFYEPV 495 (697)
Q Consensus 418 ~~CGGTLIS~--rwVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~IiiHP~Yn~~t~~nDIALLrL~~PV 495 (697)
....|.||+. -+|||.+|.+.+ ...+.|.+.. ...+..+-+..++ ..||||||++.+-
T Consensus 111 ~~GSG~ii~~~~G~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vv~~D~-------~~DlAvlki~~~~ 170 (473)
T PRK10942 111 ALGSGVIIDADKGYVVTNNHVVDN--ATKIKVQLSD-----------GRKFDAKVVGKDP-------RSDIALIQLQNPK 170 (473)
T ss_pred ceEEEEEEECCCCEEEeChhhcCC--CCEEEEEECC-----------CCEEEEEEEEecC-------CCCEEEEEecCCC
Confidence 3588999985 599999999976 4567776531 1223333333444 3699999986432
Q ss_pred ccCCCeeeeecCCCCCCCCCCEEEEEec
Q psy12777 496 KFQPNIIPICVPEDDTNFVGTSAHVTGW 523 (697)
Q Consensus 496 ~fs~~V~PICLP~~~~~~~G~~c~VtGW 523 (697)
. +.++-|-..+....|+.+.+.|.
T Consensus 171 ~----l~~~~lg~s~~l~~G~~V~aiG~ 194 (473)
T PRK10942 171 N----LTAIKMADSDALRVGDYTVAIGN 194 (473)
T ss_pred C----CceeEecCccccCCCCEEEEEcC
Confidence 2 34555654443336888888775
No 21
>PRK10898 serine endoprotease; Provisional
Probab=92.96 E-value=1.1 Score=49.33 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=51.5
Q ss_pred eeeeEEEeeCc-ceeeecccccCCCCCceEEEEccccCCCCCCCCCcEEEEEEEEEECCCCCCCCCCCceEEEecCcccc
Q psy12777 418 HKCGAALFNEN-WAVTAAHCVEDVPPSDLLLRLGEHDLSTEEEPYGYQERRVQIVASHPQFDPRTFEYDLALLRFYEPVK 496 (697)
Q Consensus 418 ~~CGGTLIS~r-wVLTAAHC~~~~~~~~l~V~LG~~dl~~~~~~~~~q~~~V~~IiiHP~Yn~~t~~nDIALLrL~~PV~ 496 (697)
....|.+|+++ +|||++|=+.+ ...+.|.+.. ...+...-+...+ .+||||||++..
T Consensus 78 ~~GSGfvi~~~G~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvl~v~~~-- 135 (353)
T PRK10898 78 TLGSGVIMDQRGYILTNKHVIND--ADQIIVALQD-----------GRVFEALLVGSDS-------LTDLAVLKINAT-- 135 (353)
T ss_pred ceeeEEEEeCCeEEEecccEeCC--CCEEEEEeCC-----------CCEEEEEEEEEcC-------CCCEEEEEEcCC--
Confidence 45789999876 99999998875 3456666531 1223333333333 369999999753
Q ss_pred cCCCeeeeecCCCCCCCCCCEEEEEecc
Q psy12777 497 FQPNIIPICVPEDDTNFVGTSAHVTGWG 524 (697)
Q Consensus 497 fs~~V~PICLP~~~~~~~G~~c~VtGWG 524 (697)
...++.|-.......|+.+.+.|+-
T Consensus 136 ---~l~~~~l~~~~~~~~G~~V~aiG~P 160 (353)
T PRK10898 136 ---NLPVIPINPKRVPHIGDVVLAIGNP 160 (353)
T ss_pred ---CCCeeeccCcCcCCCCCEEEEEeCC
Confidence 1233444433333368999998874
No 22
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
Probab=85.90 E-value=0.7 Score=48.95 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=28.8
Q ss_pred cccceEEEeeeecccceeeeeeeEeeCcEEEeecccccc
Q psy12777 573 KWPWQISLRQWIRSTYLHKCGAALFNENWAVTAAHCVED 611 (697)
Q Consensus 573 ~~Pw~~~l~~~~~~~~~~~CgGslI~~~~VLSAAHC~~~ 611 (697)
.|||-+=. ++....|.+-|.++||+++-|||||||...
T Consensus 48 ~~Py~av~-~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s 85 (251)
T COG3591 48 QFPYSAVV-QFEAATGRLCTAATLIGPNTVLTAGHCIYS 85 (251)
T ss_pred CCCcceeE-EeecCCCcceeeEEEEcCceEEEeeeEEec
Confidence 38887655 445555555666799999999999999774
No 23
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=85.89 E-value=0.46 Score=42.11 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.8
Q ss_pred eeeeEeeCc-EEEeeccccccc
Q psy12777 592 CGAALFNEN-WAVTAAHCVEDL 612 (697)
Q Consensus 592 CgGslI~~~-~VLSAAHC~~~~ 612 (697)
|-|.||+++ +|||||||+++.
T Consensus 1 GTGf~i~~~g~ilT~~Hvv~~~ 22 (120)
T PF13365_consen 1 GTGFLIGPDGYILTAAHVVEDW 22 (120)
T ss_dssp EEEEEEETTTEEEEEHHHHTCC
T ss_pred CEEEEEcCCceEEEchhheecc
Confidence 569999999 999999999864
No 24
>PF05539 Pneumo_att_G: Pneumovirinae attachment membrane glycoprotein G; InterPro: IPR008781 This family of proteins contain the major surface glycoprotein of turkey rhinotracheitis virus (TRTV), avian pneumovirus (APV), the aetiological agent of turkey rhinotracheitis (TRT), and other Metapneumoviruses. The major surface glycoprotein is the attachment (G) protein, which, by analogy with other respiratory syncytial viruses (RSV), has been proposed to be responsible for virus binding to its cell receptor. The APV G gene and its predicted protein have several features in common with their RSV counterparts. Both G proteins are type II glycoproteins and both the RSV G and APV G proteins are heavily O-glycosylated. In both RSV and APV, the G protein is the most variable protein and is a major target for neutralizing antibodies [].
Probab=39.66 E-value=3.6e+02 Score=30.12 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=17.9
Q ss_pred CceeeEeeceeeeecccccCCCC---CCCCCCcce
Q psy12777 178 GTHLGTCIDRFYFGSCCKIAGET---DVDISEPIN 209 (697)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 209 (697)
.+.+--|.=+--==|||+.+-.. ..--++|++
T Consensus 149 d~~~CrCt~~~~~vsCCK~pk~~~Tts~tts~p~~ 183 (408)
T PF05539_consen 149 DRNFCRCTFSSHDVSCCKKPKSKATTSQTTSWPQN 183 (408)
T ss_pred CCceeEEEecCCCcccccCCCcccccccccCCccc
Confidence 34444454444445899988764 334556664
No 25
>KOG0260|consensus
Probab=29.14 E-value=4.6e+02 Score=34.20 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=6.5
Q ss_pred eEEEecCCCCCccc
Q psy12777 140 TVYETSSSGRNIRH 153 (697)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (697)
.|..--|+--|+||
T Consensus 1327 ~vi~f~gsyVnyrh 1340 (1605)
T KOG0260|consen 1327 NVISFDGSYVNYRH 1340 (1605)
T ss_pred heEeecccchhHHH
Confidence 34444445445554
No 26
>KOG1492|consensus
Probab=25.94 E-value=27 Score=36.56 Aligned_cols=27 Identities=41% Similarity=0.918 Sum_probs=20.8
Q ss_pred cceeEEEeeecccCCceeeEeeceeeeecc
Q psy12777 164 TGLCMFAFSCAKANGTHLGTCIDRFYFGSC 193 (697)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (697)
.|-|.+.-.| ..+|+=.|.|--|||||
T Consensus 297 ygfcelgtsc---knqhilqctdyamfgsc 323 (377)
T KOG1492|consen 297 YGFCELGTSC---KNQHILQCTDYAMFGSC 323 (377)
T ss_pred cceecccccc---ccceeeeecchhhhcCC
Confidence 4555555555 35899999999999999
No 27
>PHA03291 envelope glycoprotein I; Provisional
Probab=20.85 E-value=2.4e+02 Score=31.77 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=11.6
Q ss_pred CCCCceEEEecCcccc
Q psy12777 481 TFEYDLALLRFYEPVK 496 (697)
Q Consensus 481 t~~nDIALLrL~~PV~ 496 (697)
.-.|++||.||...+.
T Consensus 336 sAvNEaA~ArLg~eL~ 351 (401)
T PHA03291 336 SAVNEAALARLGDELK 351 (401)
T ss_pred hhhhHHHHHHHHHHHh
Confidence 3468889988876654
Done!