Query psy12781
Match_columns 266
No_of_seqs 191 out of 1134
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:30:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3700|consensus 100.0 1.8E-39 3.9E-44 314.0 8.7 227 8-250 236-468 (705)
2 COG1835 Predicted acyltransfer 99.9 5.7E-25 1.2E-29 202.0 16.6 160 35-228 10-174 (386)
3 PF01757 Acyl_transf_3: Acyltr 99.8 8.3E-19 1.8E-23 154.3 15.6 170 41-244 2-171 (340)
4 PRK03854 opgC glucans biosynth 99.3 6.1E-11 1.3E-15 108.7 13.2 155 35-229 4-163 (375)
5 COG3274 Predicted O-acyltransf 98.7 1.5E-07 3.3E-12 82.5 11.8 144 37-233 2-145 (332)
6 PF10129 OpgC_C: OpgC protein; 98.2 5.4E-05 1.2E-09 69.0 15.7 169 42-248 4-177 (358)
7 COG3594 NolL Fucose 4-O-acetyl 97.6 0.00053 1.2E-08 61.4 9.9 88 37-161 2-89 (343)
8 COG4645 Uncharacterized protei 97.4 0.0031 6.7E-08 56.1 11.8 96 36-161 20-115 (410)
9 PF07786 DUF1624: Protein of u 96.9 0.023 5E-07 48.2 12.0 67 39-126 1-67 (223)
10 COG3503 Predicted membrane pro 96.8 0.0052 1.1E-07 53.9 7.5 94 38-158 14-107 (323)
11 COG4763 Predicted membrane pro 86.6 1.1 2.3E-05 39.8 4.4 27 36-62 18-44 (388)
12 COG2311 Predicted membrane pro 60.9 1.4E+02 0.0031 27.7 14.4 28 36-63 9-36 (394)
13 PF11084 DUF2621: Protein of u 60.2 13 0.00028 28.7 3.5 42 108-149 17-61 (141)
14 TIGR00473 pssA CDP-diacylglyce 25.5 2.9E+02 0.0062 21.9 6.3 28 239-266 86-113 (151)
No 1
>KOG3700|consensus
Probab=100.00 E-value=1.8e-39 Score=313.97 Aligned_cols=227 Identities=33% Similarity=0.581 Sum_probs=197.7
Q ss_pred ccCccccchhhhccchHHHHHHhhccCCC-CCCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhh
Q psy12781 8 LNHQRLVTQCLMGFSLIKNTKKLISLDRS-PDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDF 86 (266)
Q Consensus 8 ~~~~~~~~~~~~~fS~~~n~~~L~~~~~~-~~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~ 86 (266)
.+++++.++++.|||+++|.++|++.+++ ++.++++||+|+++++||+.+|++.+....|.+|.....++
T Consensus 236 ~~~~~~~~~il~~FS~~~N~~~lfs~~~~~~~~I~~L~giR~lS~~WVi~gH~~~~~~~~~~~n~~~~~~~--------- 306 (705)
T KOG3700|consen 236 LKSQNRLARILLAFSLWTNAKLLFSVKESKPGFIDCLDGIRFLSMFWVVFGHTFNFLQFSPVDNLASLLAF--------- 306 (705)
T ss_pred hhhhhhhhhhheeeeHhhhHHHHcccccCCCCcceeecchheeeeeEEEeccEEEEEeccccccHHHHHHH---------
Confidence 46888999999999999999999998764 46899999999999999999999987766666777666665
Q ss_pred HHHhHhcCCchHHHhhccccchhHHHHHHHHHHHHHHHHHHhhcc---cccchHHHHHHHHHHhHHHHHHHHHHH-Hhhc
Q psy12781 87 TVLIVNLGKPWTVVARAASLYTDPFIMLSGLLTSYAFLRQFEKNK---KINVMKEIVSRCFRLLPTLGALILFCT-FILP 162 (266)
Q Consensus 87 ~~~~~~~~~~~~~~~~~g~~~V~~FFviSGFll~~~~~~~~~~~~---~~~~~~f~~~R~~Rl~P~y~~~~~~~~-~~~~ 162 (266)
.++++..++.++.++||+||++||+++++++.++..+.+ +.++..++.||++|+.|+|++.+++.. .+.+
T Consensus 307 ------~~~~~~~l~~na~lsVDtFf~lSG~l~a~~~fk~~~k~~~~~~~~w~~~y~HRylRLtP~~~i~ilf~~~~~~~ 380 (705)
T KOG3700|consen 307 ------VESLWTHLILNASLSVDTFFFLSGLLLAYLFFKKKPKLKIKSPLTWLLFYLHRYLRLTPALAIFILFFTMKYIP 380 (705)
T ss_pred ------HHhhHHHHHHhcchhhhHHHHHHHHHHHHHHHhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhheeEee
Confidence 456677788999999999999999999999999887775 679999999999999999999999984 7778
Q ss_pred ccccccchhhhhHHHHHHHHHHhHHHHHHHhcCCCCCCccccceehhhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Q psy12781 163 FLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYFGFKNMCLTHTHHVGIDTQLFFISPLLVYMVW-RWPRNGLLALGFFS 241 (266)
Q Consensus 163 ~~~~gp~~~~~~~~~~~~c~~~~~~nllfi~n~~~~~~~~~~~~W~L~~e~qfYli~p~l~~~~~-~~~~~~~~~~~~~~ 241 (266)
...+||.|+. ...+.+.|..+||.|+++|||+.+.++.|.+++||||+|+|+|++.|+++..+. +.++.+..+.++.+
T Consensus 381 ~~~~gp~~~~-~~~~~~~C~~~wW~nllyInN~~~~~~~C~~~tWyLa~D~QLyivapi~L~~l~~~~~~~g~~~~v~~~ 459 (705)
T KOG3700|consen 381 GPSDGPFWNA-LTSSVETCTSNWWRNLLYINNFFDGQSMCYGITWYLAVDMQLYIVAPILLIALYKWSPKGGTGLAVAGI 459 (705)
T ss_pred ccccCccccc-CCCccchhhhCcccchhhhccCCCCCCeecceeEEeecchhHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8889999973 345678999999999999999999888999999999999999999999999985 45667777778888
Q ss_pred HHHHHHHHH
Q psy12781 242 IVSTILRFI 250 (266)
Q Consensus 242 ~~s~~~~~~ 250 (266)
++|.....+
T Consensus 460 i~s~~~~ay 468 (705)
T KOG3700|consen 460 ILSLFTRAY 468 (705)
T ss_pred HHHHHHHHh
Confidence 888777433
No 2
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=99.93 E-value=5.7e-25 Score=202.04 Aligned_cols=160 Identities=20% Similarity=0.301 Sum_probs=118.4
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHH
Q psy12781 35 RSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIML 114 (266)
Q Consensus 35 ~~~~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFvi 114 (266)
++.++...+||+|++|+++|+++|........ .... ...|..|||+||+|
T Consensus 10 ~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~-------~~g~-----------------------~~~g~~gVdiFFvl 59 (386)
T COG1835 10 SSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG-------PGGF-----------------------VGRGVLGVDLFFVL 59 (386)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHccccccCC-------CCcc-----------------------ccccccceeEeeec
Confidence 34688999999999999999999986432110 0000 01477999999999
Q ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhhcccccccchhhhhHHHHHHHHHHhHHHHHHHhc
Q psy12781 115 SGLLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHN 194 (266)
Q Consensus 115 SGFll~~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~c~~~~~~nllfi~n 194 (266)
|||+++.++.++.++++ .+..+|+.||+.||+|+|++++.++................ .. +.-...+++|+.++++
T Consensus 60 SGfli~~~~~~~~~~~~-~~~~~F~~rR~~RI~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~n~~~~~~ 135 (386)
T COG1835 60 SGFLITRSLLRSAAAPV-ISLAAFLARRLRRILPALLVVLLLTAALLLALLPPGASAAL--WA-DLAALFYLSNLLLTLA 135 (386)
T ss_pred cHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCchHHHHh--hh-hhHHHHHhhhHHHHhc
Confidence 99999999999876655 78999999999999999999998887665332222211111 11 1223456788988887
Q ss_pred CCC-----CCCccccceehhhHHHHHHHHHHHHHHHHHh
Q psy12781 195 YFG-----FKNMCLTHTHHVGIDTQLFFISPLLVYMVWR 228 (266)
Q Consensus 195 ~~~-----~~~~~~~~~W~L~~e~qfYli~p~l~~~~~~ 228 (266)
..+ .....+.|+||+++|+|||+++|++.....|
T Consensus 136 ~~~~~~~~~~~~~~~~~WSL~vE~~fYl~~pll~~~~~~ 174 (386)
T COG1835 136 VGAYFAASGLLSPLLHLWSLSVEEQFYLLFPLLLLLLRR 174 (386)
T ss_pred cCchhhhccccCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 753 1224478999999999999999999998877
No 3
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=99.81 E-value=8.3e-19 Score=154.25 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=109.8
Q ss_pred cchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHHHHHHH
Q psy12781 41 ECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSGLLTS 120 (266)
Q Consensus 41 ~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviSGFll~ 120 (266)
+.+|++|++|+++|+.+|........+..+....... .... ..|..+|++||++|||+++
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~-------------------~~~~-~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSF-------------------SIFL-FIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhH-------------------hhhh-hhhhhHHHHHHHHHHHHHH
Confidence 5799999999999999999764322111111000000 0000 4588999999999999998
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhhcccccccchhhhhHHHHHHHHHHhHHHHHHHhcCCCCCC
Q psy12781 121 YAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYFGFKN 200 (266)
Q Consensus 121 ~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~c~~~~~~nllfi~n~~~~~~ 200 (266)
.++.++.+..+++.||+.|++|+|++..+++............... ........++ ..++......
T Consensus 62 ------~~~~~~~~~~~~~~~R~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~ 127 (340)
T PF01757_consen 62 ------RSSKSRKSWKKFLKKRFLRLLIPYLFWSLIYFVLSWIVGGSSPPSF----LFLLLLFDNL----LIFNFPFFFF 127 (340)
T ss_pred ------hhhcccccHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccch----hhhhhhhhhh----hhccccccCc
Confidence 1223345789999999999999999988877665443322221111 0011111011 3444555667
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy12781 201 MCLTHTHHVGIDTQLFFISPLLVYMVWRWPRNGLLALGFFSIVS 244 (266)
Q Consensus 201 ~~~~~~W~L~~e~qfYli~p~l~~~~~~~~~~~~~~~~~~~~~s 244 (266)
.+++|.|++++|+|+|++.|++....+|.++.....+.++.++.
T Consensus 128 ~~~~~~Wfl~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (340)
T PF01757_consen 128 SCNGHLWFLSALFQFYLLFPLLLRLLKKLKRRWLLLLLILLLIL 171 (340)
T ss_pred cccchHHHHHHhhhhheehhHhhHHHhccchhHHHHHHHHHHHH
Confidence 89999999999999999999998887777665544444433333
No 4
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=99.27 E-value=6.1e-11 Score=108.73 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=91.0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHh--hccccchhHHH
Q psy12781 35 RSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVA--RAASLYTDPFI 112 (266)
Q Consensus 35 ~~~~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~g~~~V~~FF 112 (266)
.+++|...+|.+|+++++.|+++|+.......+.. .... ....+.... ....+.|++||
T Consensus 4 ~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~----~~~~---------------~~~~~~~~~~~~~~~f~mplFf 64 (375)
T PRK03854 4 VPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWH----VNSA---------------EPSLWLTLLNDFIHAFRMQVFF 64 (375)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhcccccc----ccCc---------------ccchHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999996532111000 0000 000010111 11246899999
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhhccc---ccccchhhhhHHHHHHHHHHhHHHH
Q psy12781 113 MLSGLLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFL---GSGPQWNLVVSHHATICKQYWWRNM 189 (266)
Q Consensus 113 viSGFll~~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~~~~---~~gp~~~~~~~~~~~~c~~~~~~nl 189 (266)
+|||++...+..+ .+..+|+.+|..|+.+|+++...+......+. ..+.. + +.. ...++.
T Consensus 65 ~iSG~~~~~~~~~-------~~~~~f~~~R~~rl~iP~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~--~~~~~~-- 127 (375)
T PRK03854 65 VISGYFSYMLFLR-------YPPKRWLKVRLERVGIPMLTAIPLLTLPQFIMLQYVKGKA-----E-DWP--TLSLYE-- 127 (375)
T ss_pred HHHHHHHHHHhcC-------ccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-----C-cch--hcchhh--
Confidence 9999997655321 24578999999999999998765543221110 00100 0 000 011111
Q ss_pred HHHhcCCCCCCccccceehhhHHHHHHHHHHHHHHHHHhh
Q psy12781 190 MFIHNYFGFKNMCLTHTHHVGIDTQLFFISPLLVYMVWRW 229 (266)
Q Consensus 190 lfi~n~~~~~~~~~~~~W~L~~e~qfYli~p~l~~~~~~~ 229 (266)
++........+|.|++..-+++|++.|++....++.
T Consensus 128 ----~~~~~~~~~~~hLWFl~~L~~~~l~~p~l~~~~~~~ 163 (375)
T PRK03854 128 ----KYNTLAWELISHLWFLLVLVVLTLLCVAIFKRLRRN 163 (375)
T ss_pred ----hccccCccccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111111112579999999999999999998876654
No 5
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=98.73 E-value=1.5e-07 Score=82.48 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=84.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHHH
Q psy12781 37 PDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSG 116 (266)
Q Consensus 37 ~~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviSG 116 (266)
++|+..+|.+|++|+++|+..|+...........+... + + ....+-.....+|++||+|||
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~--w-------~----------i~nvlns~sr~aVPLFfmISG 62 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTL--W-------I----------IANVLNSASRVAVPLFFMISG 62 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHH--H-------H----------HHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999765321100000000 0 0 001112336789999999999
Q ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhhcccccccchhhhhHHHHHHHHHHhHHHHHHHhcCC
Q psy12781 117 LLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYF 196 (266)
Q Consensus 117 Fll~~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~c~~~~~~nllfi~n~~ 196 (266)
++....... + .+-+.|+.-++.+...+.+.+......... -..++|..
T Consensus 63 yL~~~e~s~--------q-----~~~f~ri~l~~if~sii~~~~isl~~~~n~-------------------e~~l~~il 110 (332)
T COG3274 63 YLFFGERSA--------Q-----PKLFLRIGLSLIFYSIIIWFWISLFTPINF-------------------EFALKNIL 110 (332)
T ss_pred HHhcccccc--------c-----HHHHHHHHHHHHHHHHHHHHHHHHhccccH-------------------HHHHHHHh
Confidence 998643111 1 122234665655555444443333222110 01233322
Q ss_pred CCCCccccceehhhHHHHHHHHHHHHHHHHHhhhhHH
Q psy12781 197 GFKNMCLTHTHHVGIDTQLFFISPLLVYMVWRWPRNG 233 (266)
Q Consensus 197 ~~~~~~~~~~W~L~~e~qfYli~p~l~~~~~~~~~~~ 233 (266)
+...+.|+|++..-+-.|++.|++-....+.++..
T Consensus 111 --~~p~~yhlWflf~i~~iYLi~pLi~~~~v~~~~~~ 145 (332)
T COG3274 111 --QKPVFYHLWFLFAILGIYLISPLIQVILVSNRKLL 145 (332)
T ss_pred --cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33458999999999999999999986655554433
No 6
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.24 E-value=5.4e-05 Score=69.04 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=98.1
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHHHHHHHH
Q psy12781 42 CVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSGLLTSY 121 (266)
Q Consensus 42 ~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviSGFll~~ 121 (266)
.+|.+||++.+.|++.|.-. |. .+... ... .+-.-+-+.|.++||+..+.
T Consensus 4 riD~~RGlaL~~Ifi~Hip~--------~~--~~~~T---------------~~~-----~GfsdaAE~FVflSG~~~gl 53 (358)
T PF10129_consen 4 RIDFFRGLALVMIFIDHIPG--------NV--LEWFT---------------LRN-----FGFSDAAEGFVFLSGYAAGL 53 (358)
T ss_pred HHHHHHHHHHHHHHHHhcCC--------cH--HHHhc---------------ccc-----ccCCCcchhHhhHHHHHHHH
Confidence 49999999999999999722 11 11110 000 01134789999999999999
Q ss_pred HHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhhccc----ccccchhhh-hHHHHHHHHHHhHHHHHHHhcCC
Q psy12781 122 AFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFL----GSGPQWNLV-VSHHATICKQYWWRNMMFIHNYF 196 (266)
Q Consensus 122 ~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~~~~----~~gp~~~~~-~~~~~~~c~~~~~~nllfi~n~~ 196 (266)
.+.++.++++...-..-..||...||-.+++++++........ ++.+..... .....++-.+..+. .+.++.-
T Consensus 54 ~Y~~~~~~~g~~~~~~r~~~Ra~~lY~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~-~l~L~~q- 131 (358)
T PF10129_consen 54 AYGRRFRRRGLWAATRRLWRRAWQLYVAHIALFLLALALIAVLALWFGDPDLLWEFNLGPLFEDPVQALVG-ILLLRYQ- 131 (358)
T ss_pred HHhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhcchHHHHhChHHHHHH-HHHHHhC-
Confidence 9999887766556667789999999999998877765443222 122221111 11111222222222 2222211
Q ss_pred CCCCccccceehhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy12781 197 GFKNMCLTHTHHVGIDTQLFFISPLLVYMVWRWPRNGLLALGFFSIVSTILR 248 (266)
Q Consensus 197 ~~~~~~~~~~W~L~~e~qfYli~p~l~~~~~~~~~~~~~~~~~~~~~s~~~~ 248 (266)
|..- ==|+.-+-+-+..|+++.+.+|.++......+++-+++-...
T Consensus 132 P~~~------dILPlYivlll~~P~~l~l~~r~~~~~L~~S~~lw~~a~~~~ 177 (358)
T PF10129_consen 132 PGYL------DILPLYIVLLLLAPLILWLLRRGPWLVLAVSVALWLAAQIFG 177 (358)
T ss_pred cccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1000 024445555567899999888876655544444444444333
No 7
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.00053 Score=61.38 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHHH
Q psy12781 37 PDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSG 116 (266)
Q Consensus 37 ~~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviSG 116 (266)
++|-..+|..||+..+.|+++|.... .++ +.++ ++.+. -.+-++.||+|||
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p------~~~-----~~~~--l~~~I----------------ysFHMPlFf~ISG 52 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQP------ISP-----WLSV--LYKFI----------------YSFHMPLFFFISG 52 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhccc------ccc-----cchH--HHHHH----------------HHHHHHHHHhhhh
Confidence 35567899999999999999998642 111 1000 01110 1245899999999
Q ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy12781 117 LLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFIL 161 (266)
Q Consensus 117 Fll~~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~ 161 (266)
++-- ..++.....+..||..+|.-||.+..+++....
T Consensus 53 yf~k--------~~~~~~~~~~~~kk~~tLivPyi~f~li~~I~~ 89 (343)
T COG3594 53 YFYK--------TEKRAKSTQYVKKKARTLIVPYIFFFLIYSILY 89 (343)
T ss_pred hccc--------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8632 111112268999999999999998887776543
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0031 Score=56.07 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHH
Q psy12781 36 SPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLS 115 (266)
Q Consensus 36 ~~~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviS 115 (266)
+.+|..-+|++|+++.+.+.+.|.-.... ++.. ..+ .+-.-+-+.|-.||
T Consensus 20 ~mkRdtriDv~Ral~Lv~IfiNHvpgt~l----------e~it--------------Hkn------fgfsdaAEaFVliS 69 (410)
T COG4645 20 PMKRDTRIDVFRALALVTIFINHVPGTIL----------EEIT--------------HKN------FGFSDAAEAFVLIS 69 (410)
T ss_pred ccCchhHHHHHHHHHHHHHHHhcccHHHH----------HHhh--------------ccc------ccccccchhhhhHH
Confidence 46889999999999999999999865221 2220 000 01123568899999
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy12781 116 GLLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFIL 161 (266)
Q Consensus 116 GFll~~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~~~~ 161 (266)
|.++...|.++..++++.--..-+.||..-||-.++..+.+.+.++
T Consensus 70 GllvgmaYsrKf~~ggrla~~lkiWrRA~~LY~~himtl~iaia~F 115 (410)
T COG4645 70 GLLVGMAYSRKFMKGGRLAGTLKIWRRAMVLYVAHIMTLVIAIAIF 115 (410)
T ss_pred HHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877776655556788999999999988877766544
No 9
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=96.85 E-value=0.023 Score=48.16 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=41.7
Q ss_pred CCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHHHHH
Q psy12781 39 DIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSGLL 118 (266)
Q Consensus 39 ~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviSGFl 118 (266)
|+..+|.+|++|++..+..|........+..+. .. ....+.. ..+..+-.+|.+++|.-
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~----~~---------------~~~~~~~--~~~~~~ap~F~fl~G~s 59 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQ----SW---------------FGSFFWR--FFRGLAAPLFLFLAGIS 59 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccch----hh---------------HhhhHHH--HHHHHHHHHHHHHHHHH
Confidence 578899999999999999998543221111110 00 0001111 12346789999999999
Q ss_pred HHHHHHHH
Q psy12781 119 TSYAFLRQ 126 (266)
Q Consensus 119 l~~~~~~~ 126 (266)
++.+..++
T Consensus 60 ~~l~~~~~ 67 (223)
T PF07786_consen 60 LALSTGRR 67 (223)
T ss_pred HHHhcccc
Confidence 98776554
No 10
>COG3503 Predicted membrane protein [Function unknown]
Probab=96.79 E-value=0.0052 Score=53.88 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhHhhhhhhccccChhhhhhhcCcccchhhHHHhHhcCCchHHHhhccccchhHHHHHHHH
Q psy12781 38 DDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSGL 117 (266)
Q Consensus 38 ~~~~~ldglR~laal~Vv~~H~~~~~~~~~~~n~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~FFviSGF 117 (266)
+|+..+|.+|+++++....+|.........+.+...- . ... .-..++..-..|.+++|+
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~t--a-----------------~g~--~r~~ar~~A~~FlFLaG~ 72 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATT--A-----------------LGL--WRYFARLIASSFLFLAGV 72 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchh--h-----------------hhH--HHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999997664433222221100 0 000 112366778899999999
Q ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhHHHHHHHHHHH
Q psy12781 118 LTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCT 158 (266)
Q Consensus 118 ll~~~~~~~~~~~~~~~~~~f~~~R~~Rl~P~y~~~~~~~~ 158 (266)
-+.-+-.+... -.+++.||.++|.-.-+.+..+++
T Consensus 73 Sl~L~~~r~~~------r~~~l~kRgL~l~~l~l~It~~Tw 107 (323)
T COG3503 73 SLSLSHSRGLR------RWRFLVKRGLKLAALALAITAVTW 107 (323)
T ss_pred Hheeecccccc------chHHHHHHHHHHHHHHHHHHHeee
Confidence 87754333221 177899999999766555444443
No 11
>COG4763 Predicted membrane protein [Function unknown]
Probab=86.64 E-value=1.1 Score=39.83 Aligned_cols=27 Identities=7% Similarity=0.269 Sum_probs=23.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhHhhh
Q psy12781 36 SPDDIECVHGIRTLNAFMLLLSHKSMA 62 (266)
Q Consensus 36 ~~~~~~~ldglR~laal~Vv~~H~~~~ 62 (266)
++.|..-.|..||++++.|++.|....
T Consensus 18 nk~rm~W~d~aKGlsI~lVV~~h~~~~ 44 (388)
T COG4763 18 NKQRMLWIDQAKGLSICLVVIYHSVIT 44 (388)
T ss_pred CcccCcchhhhcCeeEEeeeeehheee
Confidence 366788899999999999999998653
No 12
>COG2311 Predicted membrane protein [Function unknown]
Probab=60.95 E-value=1.4e+02 Score=27.73 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.5
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhHhhhh
Q psy12781 36 SPDDIECVHGIRTLNAFMLLLSHKSMAL 63 (266)
Q Consensus 36 ~~~~~~~ldglR~laal~Vv~~H~~~~~ 63 (266)
.++|+..+|.+|++|.+.|.......+.
T Consensus 9 ~~eRi~~LDilRG~AlLGILl~Ni~~F~ 36 (394)
T COG2311 9 QRERILTLDILRGFALLGILLVNISAFG 36 (394)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999998886653
No 13
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=60.25 E-value=13 Score=28.70 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc---cccchHHHHHHHHHHhHH
Q psy12781 108 TDPFIMLSGLLTSYAFLRQFEKNK---KINVMKEIVSRCFRLLPT 149 (266)
Q Consensus 108 V~~FFviSGFll~~~~~~~~~~~~---~~~~~~f~~~R~~Rl~P~ 149 (266)
.-..+.|.||.+.+++++++.+.. .++|-++|+.|-.-++--
T Consensus 17 li~l~~IGGfFMFRKFLK~lPKeDGkS~LDWq~~yi~~trhlW~d 61 (141)
T PF11084_consen 17 LIGLMAIGGFFMFRKFLKRLPKEDGKSILDWQEYYIEKTRHLWTD 61 (141)
T ss_pred HHHHHHHhHHHHHHHHHHhCCcccCcccccHHHHHHHHhHhhcCH
Confidence 345677999999999999886653 368888999887776653
No 14
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=25.51 E-value=2.9e+02 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCC
Q psy12781 239 FFSIVSTILRFIVTYKKQLSLFIYFGNP 266 (266)
Q Consensus 239 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 266 (266)
++.+++.+++.........+.-.+.|.|
T Consensus 86 ~~~~l~~a~RLArFN~~~~~~~~F~GlP 113 (151)
T TIGR00473 86 ALFFLCGILRLARFNVLNVKLPSFIGLP 113 (151)
T ss_pred HHHHHHHHHHHHHhccccCCCCcceecC
Confidence 3344455555544443322222445544
Done!