Query psy12781
Match_columns 266
No_of_seqs 191 out of 1134
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:30:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lat_A Dolichyl-diphosphooligo 12.0 1.9E+02 0.0064 16.4 2.5 18 44-61 12-29 (37)
2 1rkl_A Dolichyl-diphosphooligo 11.3 2E+02 0.007 16.2 2.5 18 43-60 11-28 (36)
3 1xkm_B Distinctin chain B; por 6.8 3.1E+02 0.011 13.6 2.6 16 114-129 3-18 (26)
4 3mp7_B Preprotein translocase 5.0 6.3E+02 0.021 15.8 3.0 37 24-60 12-48 (61)
5 1sy9_B Cyclic-nucleotide-gated 3.9 4.4E+02 0.015 13.2 1.3 8 140-147 7-14 (26)
6 1emz_A Envelope glycoprotein E 3.7 2.6E+02 0.0088 14.5 0.3 13 19-31 11-23 (26)
7 1nkz_B Light-harvesting protei 3.6 7.4E+02 0.025 14.2 2.3 19 42-61 15-33 (41)
8 1lgh_B LH II, B800/850, light 3.4 7.8E+02 0.027 14.4 2.3 19 42-61 20-38 (45)
9 2jtw_A Transmembrane helix 7 o 3.3 5E+02 0.017 13.3 1.1 7 143-149 8-14 (26)
10 1yod_A Water-solublized phosph 3.1 7.2E+02 0.025 13.0 3.3 24 134-157 6-29 (30)
No 1
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=11.99 E-value=1.9e+02 Score=16.44 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHhHhh
Q psy12781 44 HGIRTLNAFMLLLSHKSM 61 (266)
Q Consensus 44 dglR~laal~Vv~~H~~~ 61 (266)
+.+=..+++.|+.+|...
T Consensus 12 n~lG~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 12 NMLGVSLFLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456667888999999753
No 2
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=11.27 E-value=2e+02 Score=16.16 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHhHh
Q psy12781 43 VHGIRTLNAFMLLLSHKS 60 (266)
Q Consensus 43 ldglR~laal~Vv~~H~~ 60 (266)
-+.+=..+++.|+.+|..
T Consensus 11 an~lG~~~~~LIvlYH~v 28 (36)
T 1rkl_A 11 AITFGIVMMTLIVIYHAV 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566788889999974
No 3
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=6.77 E-value=3.1e+02 Score=13.64 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhh
Q psy12781 114 LSGLLTSYAFLRQFEK 129 (266)
Q Consensus 114 iSGFll~~~~~~~~~~ 129 (266)
.||..-+..++.+..+
T Consensus 3 vsgliearkyleqlhr 18 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHR 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6898889888877654
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.03 E-value=6.3e+02 Score=15.78 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCCCCCCcchhHHHHHHHHHHHHHhHh
Q psy12781 24 IKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKS 60 (266)
Q Consensus 24 ~~n~~~L~~~~~~~~~~~~ldglR~laal~Vv~~H~~ 60 (266)
.++++++.+.-+++++=+.....|..++-.++.+-..
T Consensus 12 ~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 12 WKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp HHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777667777788888888887777776654
No 5
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=3.91 E-value=4.4e+02 Score=13.16 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=5.2
Q ss_pred HHHHHHHh
Q psy12781 140 VSRCFRLL 147 (266)
Q Consensus 140 ~~R~~Rl~ 147 (266)
.+|+.|+.
T Consensus 7 frri~rlv 14 (26)
T 1sy9_B 7 FRRIARLV 14 (26)
T ss_pred HHHHHHHH
Confidence 46777764
No 6
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=3.74 E-value=2.6e+02 Score=14.52 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=8.6
Q ss_pred hccchHHHHHHhh
Q psy12781 19 MGFSLIKNTKKLI 31 (266)
Q Consensus 19 ~~fS~~~n~~~L~ 31 (266)
.=||+..||.|..
T Consensus 11 ayfsm~gnWaKVl 23 (26)
T 1emz_A 11 AYFSMVGNWAKXX 23 (26)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHhhHHhhhc
Confidence 4478889988753
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=3.61 E-value=7.4e+02 Score=14.21 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHHHhHhh
Q psy12781 42 CVHGIRTLNAFMLLLSHKSM 61 (266)
Q Consensus 42 ~ldglR~laal~Vv~~H~~~ 61 (266)
..+|.|++.++.++- |...
T Consensus 15 ~~~~~~~F~~iA~vA-H~l~ 33 (41)
T 1nkz_B 15 VIDGTRVFLGLALVA-HFLA 33 (41)
T ss_dssp HHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH-HHHH
Confidence 478999999998876 5543
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=3.41 E-value=7.8e+02 Score=14.44 Aligned_cols=19 Identities=5% Similarity=0.009 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHhHhh
Q psy12781 42 CVHGIRTLNAFMLLLSHKSM 61 (266)
Q Consensus 42 ~ldglR~laal~Vv~~H~~~ 61 (266)
..+|.|++.++.++- |...
T Consensus 20 ~~~~~~~F~~iA~vA-H~L~ 38 (45)
T 1lgh_B 20 FKTTFSAFIILAAVA-HVLV 38 (45)
T ss_dssp HHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH-HHHH
Confidence 478999999998876 5543
No 9
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=3.25 E-value=5e+02 Score=13.34 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=4.3
Q ss_pred HHHHhHH
Q psy12781 143 CFRLLPT 149 (266)
Q Consensus 143 ~~Rl~P~ 149 (266)
++|++|+
T Consensus 8 ylRlwaL 14 (26)
T 2jtw_A 8 YLRLWAL 14 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4577665
No 10
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=3.14 E-value=7.2e+02 Score=13.01 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHH
Q psy12781 134 NVMKEIVSRCFRLLPTLGALILFC 157 (266)
Q Consensus 134 ~~~~f~~~R~~Rl~P~y~~~~~~~ 157 (266)
+.-+.+++|++|+....+..+.+.
T Consensus 6 NlQ~LfvNfcLilICllLi~Iivm 29 (30)
T 1yod_A 6 NLQNLYINRCLREICQELKEIRAM 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Done!