Query psy12781
Match_columns 266
No_of_seqs 191 out of 1134
Neff 8.4
Searched_HMMs 13730
Date Fri Aug 16 19:30:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12781.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12781hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijdb_ f.3.1.1 (B:) Light-har 24.9 25 0.0018 18.8 2.3 18 41-59 15-32 (40)
2 d1nkzb_ f.3.1.1 (B:) Light-har 23.2 28 0.0021 18.7 2.3 18 41-59 14-31 (41)
3 d1y6ia2 a.261.1.1 (A:83-233) M 9.0 32 0.0023 24.5 -0.1 28 33-60 118-145 (151)
4 d1lghb_ f.3.1.1 (B:) Light-har 5.4 2.1E+02 0.015 15.4 2.3 19 42-61 18-36 (43)
5 d1z3xa2 a.261.1.1 (A:88-235) G 3.0 1.3E+02 0.0097 20.9 0.0 28 33-60 118-145 (148)
6 d3ctda1 a.80.1.2 (A:258-420) U 2.7 3.1E+02 0.023 19.1 1.8 13 136-148 35-47 (163)
7 d1pi1a_ a.29.7.1 (A:) Mob1a {H 2.6 2.9E+02 0.021 19.7 1.6 18 134-151 115-132 (185)
8 d1jo5a_ f.3.1.1 (A:) Light-har 2.6 2.6E+02 0.019 15.3 1.0 18 42-60 23-40 (48)
9 d1h9ii_ g.3.2.1 (I:) Trypsin i 2.5 2.3E+02 0.017 13.4 0.6 12 3-14 16-27 (30)
10 d2qw6a1 a.80.1.2 (A:241-328) U 2.3 4E+02 0.029 16.5 1.8 12 136-147 32-43 (88)
No 1
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=24.85 E-value=25 Score=18.83 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHHHhH
Q psy12781 41 ECVHGIRTLNAFMLLLSHK 59 (266)
Q Consensus 41 ~~ldglR~laal~Vv~~H~ 59 (266)
..+||-|.+.++.++- |.
T Consensus 15 ~vIdGtRvF~~iA~~A-H~ 32 (40)
T d1ijdb_ 15 HVIDGTRVFLVIAAIA-HF 32 (40)
T ss_dssp HHHHHHHHHHHHHHHH-HH
T ss_pred HhhcchhHHHHHHHHH-HH
Confidence 3689999999999876 44
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=23.21 E-value=28 Score=18.73 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHHHhH
Q psy12781 41 ECVHGIRTLNAFMLLLSHK 59 (266)
Q Consensus 41 ~~ldglR~laal~Vv~~H~ 59 (266)
..+||-|.+.++.++- |.
T Consensus 14 ~vIdGtRvF~~iA~~A-H~ 31 (41)
T d1nkzb_ 14 YVIDGTRVFLGLALVA-HF 31 (41)
T ss_dssp HHHHHHHHHHHHHHHH-HH
T ss_pred HhhcchHHHHHHHHHH-HH
Confidence 3589999999999876 54
No 3
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=8.99 E-value=32 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=23.4
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHhHh
Q psy12781 33 LDRSPDDIECVHGIRTLNAFMLLLSHKS 60 (266)
Q Consensus 33 ~~~~~~~~~~ldglR~laal~Vv~~H~~ 60 (266)
.+-+.++++.++.+|++..+..++.|-.
T Consensus 118 l~AP~GHLP~~~~lrG~~~~~~l~~h~~ 145 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGVRVAESLYRHPV 145 (151)
T ss_dssp TTSCTTCCSCCCCTTCTHHHHHHHTSTH
T ss_pred CCCCCCCCCccchhhhHHHHHHHHcCcc
Confidence 3456789999999999999999999953
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.44 E-value=2.1e+02 Score=15.37 Aligned_cols=19 Identities=5% Similarity=0.009 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHhHhh
Q psy12781 42 CVHGIRTLNAFMLLLSHKSM 61 (266)
Q Consensus 42 ~ldglR~laal~Vv~~H~~~ 61 (266)
.++|.|++.++.|+. |...
T Consensus 18 ~~~g~~~F~~iAvvA-HiLv 36 (43)
T d1lghb_ 18 FKTTFSAFIILAAVA-HVLV 36 (43)
T ss_dssp HHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH-HHHH
Confidence 579999999999887 5443
No 5
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.99 E-value=1.3e+02 Score=20.86 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=23.6
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHhHh
Q psy12781 33 LDRSPDDIECVHGIRTLNAFMLLLSHKS 60 (266)
Q Consensus 33 ~~~~~~~~~~ldglR~laal~Vv~~H~~ 60 (266)
.+.+.++++.++.+|++.++-.++.|..
T Consensus 118 l~AP~GHLP~~~~lrg~~~~~~~l~h~a 145 (148)
T d1z3xa2 118 LSAPRGHLPLTNQLRGVQVLNALLNHPA 145 (148)
T ss_dssp TTSCTTCCSCCCCTTCSHHHHHHHTCGG
T ss_pred CCCCCCCCCcCCccchHHHHHHHhcCcc
Confidence 3457889999999999999999999964
No 6
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=2.66 E-value=3.1e+02 Score=19.11 Aligned_cols=13 Identities=15% Similarity=-0.131 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhH
Q psy12781 136 MKEIVSRCFRLLP 148 (266)
Q Consensus 136 ~~f~~~R~~Rl~P 148 (266)
..|+.||++|+.-
T Consensus 35 p~~i~RRli~~As 47 (163)
T d3ctda1 35 PNFIFRRLLISAC 47 (163)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6799999999863
No 7
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.63 E-value=2.9e+02 Score=19.67 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHhHHHH
Q psy12781 134 NVMKEIVSRCFRLLPTLG 151 (266)
Q Consensus 134 ~~~~f~~~R~~Rl~P~y~ 151 (266)
+..+-+.||++|++-=.+
T Consensus 115 ~~vk~I~rrLfRVyaHiY 132 (185)
T d1pi1a_ 115 SVAKTILKRLFRVYAHIY 132 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 456678999999976444
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.60 E-value=2.6e+02 Score=15.31 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHhHh
Q psy12781 42 CVHGIRTLNAFMLLLSHKS 60 (266)
Q Consensus 42 ~ldglR~laal~Vv~~H~~ 60 (266)
.++|.|++.++.|+. |..
T Consensus 23 ~~~g~~~F~~iAvvA-H~L 40 (48)
T d1jo5a_ 23 YMSGLWLFSAVAIVA-HLA 40 (48)
T ss_dssp HHHTTTHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHH-HHH
Confidence 578999999999887 543
No 9
>d1h9ii_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=2.49 E-value=2.3e+02 Score=13.41 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=7.4
Q ss_pred cccccccCcccc
Q psy12781 3 LASCALNHQRLV 14 (266)
Q Consensus 3 ~~~~~~~~~~~~ 14 (266)
||+|.+..+..+
T Consensus 16 lagcvc~~n~fc 27 (30)
T d1h9ii_ 16 LAGCVCTNNKFC 27 (30)
T ss_dssp CTTCEECTTSBE
T ss_pred cceeEecCCCcc
Confidence 677777665543
No 10
>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=2.30 E-value=4e+02 Score=16.47 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHh
Q psy12781 136 MKEIVSRCFRLL 147 (266)
Q Consensus 136 ~~f~~~R~~Rl~ 147 (266)
..|+.||++++.
T Consensus 32 ~~~i~RRLi~~A 43 (88)
T d2qw6a1 32 LASICRRLMVIG 43 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 468999999875
Done!