RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12781
         (266 letters)



>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].
          Length = 386

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 9/139 (6%)

Query: 111 FIMLSGLLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFLGSGPQW 170
           F +LSG L + + LR       I++   +  R  R+LP L  ++L    +L  L      
Sbjct: 56  FFVLSGFLITRSLLRSAA-APVISLAAFLARRLRRILPALLVVLLLTAALLLALLPPGAS 114

Query: 171 NLVVSHHATICKQYWWRNMMFIHNYFGFKNMC-----LTHTHHVGIDTQLFFISPLLVYM 225
             + +  A +   ++  N++       +         L H   + ++ Q + + PLL+ +
Sbjct: 115 AALWADLAAL---FYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLLFPLLLLL 171

Query: 226 VWRWPRNGLLALGFFSIVS 244
           + R      L L   ++ S
Sbjct: 172 LRRVRFALALLLLLLALAS 190


>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family.  This family
           includes a range of acyltransferase enzymes. This domain
           is found in many as yet uncharacterized C. elegans
           proteins and it is approximately 300 amino acids long.
          Length = 326

 Score = 30.6 bits (69), Expect = 0.80
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 21/154 (13%)

Query: 111 FIMLSGLLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILPFLGSGPQW 170
           F  +SG L + +  R+    K +        R  RLL       L    +   +G    +
Sbjct: 51  FFFISGYLLALSRSRRRSLFKFL------KKRLLRLLIPYLFWSLLYFLLGLLVGGLSVY 104

Query: 171 NLVVSHHATICKQYWWRNMMFIHNYFGFKNMCLTHTHHVGIDTQLFFISPLLVYMVWRWP 230
            L++                 +     F      H   +      + + PLL+ ++ +  
Sbjct: 105 GLLLL---------------LLLLGLLFGGGPNGHLWFLPALFVFYLLLPLLLRLLRKLK 149

Query: 231 RNGLLALGFFSIVSTILRFIVTYKKQLSLFIYFG 264
           +  LL L    ++ ++L  ++         +   
Sbjct: 150 KLLLLLLLALLLLLSLLYILILLVGLPPTVLNLL 183


>gnl|CDD|219792 pfam08318, COG4, COG4 transport protein.  This region is found in
           yeast oligomeric golgi complex component 4 which is
           involved in ER to Golgi an intra Golgi transport.
          Length = 330

 Score = 28.9 bits (65), Expect = 2.9
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 123 FLRQFEKNKKINVMKEIVSRCFRLLPTLGA----LILFCTFI 160
           F ++F++  K   + E+ +R F+L P +G     L L+  +I
Sbjct: 12  FKKRFDEAAKAQDVAEL-TRFFKLFPLIGQEEEGLELYSKYI 52


>gnl|CDD|214809 smart00762, Cog4, COG4 transport protein.  This region is found in
           yeast oligomeric golgi complex component 4 which is
           involved in ER to Golgi and intra Golgi transport.
          Length = 324

 Score = 28.8 bits (65), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 123 FLRQFEKNKKINVMKEIVSRCFRLLPTLGA----LILFCTFI 160
           F  +F++  K   + E+ +R F+L P +G     L L+  +I
Sbjct: 12  FKERFDEAVKAQDVPEL-TRFFKLFPLIGMEEEGLELYSKYI 52


>gnl|CDD|224925 COG2014, COG2014, Uncharacterized conserved protein [Function
           unknown].
          Length = 250

 Score = 27.9 bits (62), Expect = 4.9
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 28/133 (21%)

Query: 25  KNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLY 84
           K+ ++ I L  S D IE   G+  +NA    +S          YI+  +           
Sbjct: 64  KSLEEFIELADSLDPIERTLGVAAINA----VSQY--------YIDLEEANWFD------ 105

Query: 85  DFTVLIVNLGKPWTVVARAASL--YTDPFIMLSGLLTSYAFLRQFEKNKKINVMKEIVSR 142
                I++L +    +   A           L      Y F R   K  K   + + +  
Sbjct: 106 -----ILDLIQRDDKIKMIAEFGNMPPVVRTLKEKFEVYVFER-NPKLPKRGTLSDTLEY 159

Query: 143 CFRLLPTLGALIL 155
             ++LP +  +I 
Sbjct: 160 --QILPEVDVIIA 170


>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
          Length = 586

 Score = 28.2 bits (64), Expect = 5.7
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 9/31 (29%)

Query: 82  KLYDFTVLIVNLGKPWT----VVARAASLYT 108
            L + TVLI N     T    V AR AS+YT
Sbjct: 286 PLMERTVLIAN-----TSNMPVAAREASIYT 311


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,684,433
Number of extensions: 1315697
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 44
Length of query: 266
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 171
Effective length of database: 6,723,972
Effective search space: 1149799212
Effective search space used: 1149799212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)