RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12781
         (266 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.20
 Identities = 34/146 (23%), Positives = 48/146 (32%), Gaps = 31/146 (21%)

Query: 22  SLIKN-TKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMA---LFFN------PYINR 71
            LIK   + L  L R+  D E V   + LN  +  L + S      +        P I  
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFT-QGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGV 243

Query: 72  TQMASISSPLKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSGLLTSYAF-----LRQ 126
            Q+A      KL  FT        P  + +              GL+T+ A         
Sbjct: 244 IQLAHYVVTAKLLGFT--------PGELRSYLKGATG----HSQGLVTAVAIAETDSWES 291

Query: 127 FEKN--KKINVMKEIVSRCFRLLPTL 150
           F  +  K I V+  I  RC+   P  
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNT 317



 Score = 26.9 bits (59), Expect = 8.9
 Identities = 18/124 (14%), Positives = 29/124 (23%), Gaps = 44/124 (35%)

Query: 20   GFSLIK----NTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMA 75
            GFS++     N   L               IR              A+ F   ++     
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKG----KRIR----------ENYSAMIFETIVDGKLKT 1703

Query: 76   -----SISSPLKLYDFT----VLIVNLGKPWTVVARAASLYTDPFIMLSGLLTSYAFLRQ 126
                  I+     Y F     +L  +     T        +T P + L       A    
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLL--SA----TQ-------FTQPALTL----MEKAAFED 1746

Query: 127  FEKN 130
             +  
Sbjct: 1747 LKSK 1750


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.54
 Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 3/25 (12%)

Query: 71 RTQMASISSPLKLY--DFT-VLIVN 92
          +  +  + + LKLY  D    L + 
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.86
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 20/88 (22%)

Query: 107 YTDPFIMLSGLLTSYAFLRQFEKNKKINVMKEIVSRCFRLLPTLGALILFCTFILP---- 162
           + +   +   +   + FL Q     KI       +    +L TL  L  +  +I      
Sbjct: 486 HPERMTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 163 ----------FLGSGPQWNLVVSHHATI 180
                     FL    + NL+ S +  +
Sbjct: 541 YERLVNAILDFL-PKIEENLICSKYTDL 567



 Score = 29.1 bits (64), Expect = 2.0
 Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 61/268 (22%)

Query: 27  TKKLISLDRSPDDIECVHGI----RTLNAFMLLLSHKSMALFFNP--YINRTQMASISSP 80
            + L+ L   P     + G+    +T  A  + LS+K          ++N     S  + 
Sbjct: 141 RQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 81  LKLYDFTVLIVNLGKPWTVVARAASLYTDPFIMLSGLLTSYAFLRQFEKNKKI--NVM-K 137
           L++     L+  +   WT  +  +S        +   L      + +E    +  NV   
Sbjct: 199 LEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 138 EIVSRCFRLLPTLGALILFCT---FILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIH- 193
           +     F     L   IL  T    +  FL +    ++ + HH          +M     
Sbjct: 257 KAW-NAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHH----------SMTLTPD 301

Query: 194 -------NYFGFKNMCLTHTHHVGIDTQLFFISPLLVYMVWRWPRNGLLALGFF------ 240
                   Y   +   L          ++   +P  + ++    R+GL     +      
Sbjct: 302 EVKSLLLKYLDCRPQDLPR--------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 241 ---SIVSTILRFI--VTYKK---QLSLF 260
              +I+ + L  +    Y+K   +LS+F
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVF 381


>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
           1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
           3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
          Length = 339

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 148 PTLGALILFCTFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYFGFKNMCLT 204
           PTL  L+ F      ++ S P  +++  H     K    R    + ++        T
Sbjct: 98  PTLVDLLKFIDDAKVWMTSDPD-HVIAIH----SKGGKGRTGTLVSSWLLEDGKFDT 149


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,088,182
Number of extensions: 233889
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 8
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.2 bits)