RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12781
         (266 letters)



>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 31.6 bits (71), Expect = 0.025
 Identities = 13/72 (18%), Positives = 27/72 (37%)

Query: 158 TFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYFGFKNMCLTHTHHVGIDTQLFF 217
           T   PF+ + P + +      TIC Q  +  + +  ++ G             I+   F+
Sbjct: 1   TLPKPFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 60

Query: 218 ISPLLVYMVWRW 229
           I  +   M  ++
Sbjct: 61  IPDMNSRMAGQY 72


>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 298

 Score = 27.0 bits (58), Expect = 2.2
 Identities = 7/82 (8%), Positives = 23/82 (28%)

Query: 169 QWNLVVSHHATICKQYWWRNMMFIHNYFGFKNMCLTHTHHVGIDTQLFFISPLLVYMVWR 228
           Q  + +     I     +R    + +      +     H +       +++   +    R
Sbjct: 164 QQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRR 223

Query: 229 WPRNGLLALGFFSIVSTILRFI 250
              +G           +++ F+
Sbjct: 224 VLISGTPIQNDLLEYFSLVHFV 245


>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
           3 {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 153

 Score = 25.5 bits (55), Expect = 4.9
 Identities = 9/63 (14%), Positives = 15/63 (23%)

Query: 143 CFRLLPTLGALILFCTFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYFGFKNMC 202
           C       GA  +F  F   F+        V       C+   + +   +    G     
Sbjct: 60  CATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV 119

Query: 203 LTH 205
              
Sbjct: 120 QFV 122


>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308
           {Desulfitobacterium hafniense [TaxId: 49338]}
          Length = 251

 Score = 25.2 bits (55), Expect = 8.1
 Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 15/137 (10%)

Query: 25  KNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMASISSPLKLY 84
              +      +S + +E   G+  +NA+                +  +    +   +   
Sbjct: 58  LPLRVAAGCVKSWNYVEASIGLAAINAYYNNPQVAREH-----GVIFSDAKRVEDRMNDP 112

Query: 85  DFTVLIVNLGKPWTVVARAASLYTDPFIMLSGLLTSYAFLRQFEKNKKINVMKEIVSRCF 144
                    GK   VV          F  L  LL     L   E + +            
Sbjct: 113 FIMSQNEVKGKKVGVVGH--------FPHLESLLEPICDLSILEWSPEEGDYPL--PASE 162

Query: 145 RLLPTLGALILFCTFIL 161
            +LP    + + C  ++
Sbjct: 163 FILPECDYVYITCASVV 179


>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
           {Escherichia coli [TaxId: 562]}
          Length = 156

 Score = 24.8 bits (53), Expect = 9.9
 Identities = 8/82 (9%), Positives = 22/82 (26%)

Query: 148 PTLGALILFCTFILPFLGSGPQWNLVVSHHATICKQYWWRNMMFIHNYFGFKNMCLTHTH 207
             +GA+++    ++    + P      + HA I        +M  +              
Sbjct: 27  VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPC 86

Query: 208 HVGIDTQLFFISPLLVYMVWRW 229
            +     +      +V+     
Sbjct: 87  VMCAGAMIHSRIGRVVFGARDA 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,012,655
Number of extensions: 45785
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 9
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.3 bits)