RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12782
(203 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 204 bits (521), Expect = 8e-67
Identities = 76/191 (39%), Positives = 103/191 (53%), Gaps = 9/191 (4%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ V LG + ++S V+K+ VHP + P D+A+L+L RPV
Sbjct: 48 APSNYTVRLGSHDLSSNEGG--GQVIKVKKVIVHP--NYNPSTYDNDIALLKLKRPVTLS 103
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
++ PICLP G + G +GWG G L P LQ V+VPI+ N +C+R +
Sbjct: 104 DNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPL-PDVLQEVNVPIVSNAECKRAYSYG 162
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
G I D M+CAG G KD+CQGDSGGPL+ GR L+GIVS G CA+ PG+Y
Sbjct: 163 G---TITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVY 219
Query: 185 HRVAYTVDWIS 195
RV+ +DWI
Sbjct: 220 TRVSSYLDWIQ 230
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 191 bits (488), Expect = 6e-62
Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
++V LG + ++S V K+ +HP + P D+A+L+L PV
Sbjct: 49 DPSNIRVRLGSHDLSS---GEEGQVIKVSKVIIHP--NYNPSTYDNDIALLKLKEPVTLS 103
Query: 66 PHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
++ PICLP + G +GWG G+ P TLQ V+VPI+ N C R +
Sbjct: 104 DNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGG 163
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
G I D M+CAG G KD+CQGDSGGPL+ GRW L+GIVS G CA+ G+PG+Y
Sbjct: 164 G---AITDNMLCAGGLEGGKDACQGDSGGPLVCND-GRWVLVGIVSWGSGCARPGKPGVY 219
Query: 185 HRVAYTVDWI 194
RV+ +DWI
Sbjct: 220 TRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 142 bits (359), Expect = 1e-42
Identities = 72/190 (37%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+A+ V+V LG + I F V+K+ VHP + P D D+A+L+L PV
Sbjct: 46 NAKSVRVVLGAHNIVLREGGEQ--KFDVKKVIVHP--NYNPDTD-NDIALLKLKSPVTLG 100
Query: 66 PHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
+ PICLP D +G +GWG + P TLQ V VP++ C +
Sbjct: 101 DTVRPICLPTASSDLPVGTTCTVSGWGNTKTLGL--PDTLQEVTVPVVSRETCRSAY--- 155
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
+ D M+CAG G KD+CQGDSGGPL+ LIGIVS GY CA PG+Y
Sbjct: 156 --GGTVTDNMICAGA--GGKDACQGDSGGPLVCSDG---ELIGIVSWGYGCASGNYPGVY 208
Query: 185 HRVAYTVDWI 194
V+ +DWI
Sbjct: 209 TPVSSYLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 56.4 bits (136), Expect = 1e-09
Identities = 51/180 (28%), Positives = 73/180 (40%), Gaps = 19/180 (10%)
Query: 33 VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG-WA---- 87
VR I VH ++ +P D+AVL L R +P + I + + FL +
Sbjct: 108 VRTIYVHEFY--SPGNLGNDIAVLELARAAS-LPRVK-ITSFDASDTFLNSVTTVSPMTN 163
Query: 88 AGWGALQ--AGSRLRPKT--LQAVDVPIIDNRQCERWHKSNGINVVIYDEM--MCAGYRG 141
+G R PK L V V + C + +K + CAG
Sbjct: 164 GTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQ-YKGCANASDGATGLTGFCAGRPP 222
Query: 142 GAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNT 200
KD+CQGDSGGP+ + G+VS G C PG+Y V+ DWI+ + N
Sbjct: 223 --KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTNG 280
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 32.0 bits (73), Expect = 0.16
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 106 AVDVPIIDNRQCERWH-KSNGINVVIYDEMMCA-GYRGGAKDSCQGDSGGPLMMERTGRW 163
AVDV ID+ E H K N +N D + Y C+GD GGPL+ +G+
Sbjct: 191 AVDVYGIDSSG-ELKHRKLNIVNCYSNDLSIGTDQY------LCKGDDGGPLIKNVSGKN 243
Query: 164 FLIGIVSAG 172
+IG + G
Sbjct: 244 TVIGFGATG 252
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 56 LRLDR-PVQYMPHIAPICLPEKGEDFLGQFGW 86
LR D P+Q++ +AP L +K D+LG FG+
Sbjct: 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGF 419
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional.
Length = 430
Score = 29.5 bits (66), Expect = 1.2
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 71 ICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV- 129
I L EKG++F G G A R K V I+ N E + K+NGI VV
Sbjct: 234 IFLDEKGQEFHGD--KIIGLTAKHLKKEGRLKNDVVV-GTILSNMGLEVFLKNNGIKVVR 290
Query: 130 -------IYDEMMCAGYRGGAKDS 146
+ +EM+ G + S
Sbjct: 291 TKVGDRYVLEEMLKLNATLGGERS 314
>gnl|CDD|237278 PRK13029, PRK13029, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1186
Score = 27.1 bits (60), Expect = 9.1
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 80 FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
L F W GW L + R L V V NR W
Sbjct: 900 LLLGFAWQKGWVPLSLDALERAIELNGVAVD--SNRAAFEW 938
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,524,176
Number of extensions: 971353
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 12
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)