RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12782
(203 letters)
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 242 bits (619), Expect = 7e-80
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 9/203 (4%)
Query: 4 TASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
++ +++ G++ + E LP +R++ +H F P+ DVA+L LDRP+
Sbjct: 185 QSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHS--NFNPKTVVNDVALLLLDRPLV 242
Query: 64 YMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLR-PKTLQAVDVPIIDNRQCERWHK 122
+I ICLP++ + F +A+GWG + GSR R L+ + +P +D +C+ +
Sbjct: 243 QADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLR 302
Query: 123 SN--GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT---GRWFLIGIVSAGYSCAQ 177
+ G+ V+ +CAG G KD+C GD G PL R+ +GIV+ G C
Sbjct: 303 NTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGD 361
Query: 178 QGQPGIYHRVAYTVDWISYIMNT 200
+ PG+Y VA+ +WI M
Sbjct: 362 ENVPGVYANVAHFRNWIDQEMQA 384
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 233 bits (596), Expect = 8e-78
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 1 MTNTASARQVQVTLGDYVINSAVE---------PLPAYTFGVRKINVHPYFKFTPQADRY 51
+V LG++ + + P G+ + HP + + +
Sbjct: 73 RVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYH 132
Query: 52 DVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVP 110
D+A++RL+R V++ +I P+CLP+ E+ GQ GWG + G Q + VP
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQ--YSTIKQKLAVP 190
Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRWFLIGIV 169
++ QC + + G+ + +CAG KDSC GDSGGPL+ ER ++FL G+V
Sbjct: 191 VVHAEQCAKTFGAAGVR--VRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQFFLEGLV 247
Query: 170 SAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
S G +C +G PGIY +V DWI +
Sbjct: 248 SFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 225 bits (577), Expect = 2e-75
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRP 61
S + V LG + E + +R+++VHP Y + D+A+L L+
Sbjct: 47 EAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENS 103
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
V P++ PICLP+ + G G+ +G+G ++ L+ V +P+ + + CE W
Sbjct: 104 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENW 160
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQ 178
+ V M CAG+ +D+CQGDSGG + T RW GIVS G C++
Sbjct: 161 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR- 219
Query: 179 GQPGIYHRVAYTVDWISYIMN 199
G Y +V VDWI M
Sbjct: 220 -GYGFYTKVLNYVDWIKKEME 239
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 219 bits (560), Expect = 7e-73
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 12/197 (6%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ V + +G++ ++A T V I V+ + P DV+V++ + +
Sbjct: 49 APALVSLVVGEHDSSAASTV--RQTHDVDSIFVNE--NYDPATLENDVSVIKTAVAITFD 104
Query: 66 PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
++ PIC P+ D++ + +GWG + +G P L+ V + I N C+ + S+
Sbjct: 105 INVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSD- 163
Query: 126 INVVIYDEMMCAGYRGGA--KDSCQGDSGGPLMM-ERTGRWFLIGIVSAGYSCAQQGQPG 182
IYD+M+CA G +DSCQGDSGGPL + + +G + L+GIVS G CA G PG
Sbjct: 164 ---TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPG 219
Query: 183 IYHRVAYTVDWISYIMN 199
+Y RV + WI+ +
Sbjct: 220 VYSRVGFHAGWITDTIT 236
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 218 bits (559), Expect = 8e-73
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ LG ++ ++ P + +I ++P + + D+A++ L+ V
Sbjct: 46 RNLEPSKWTAILGLHMKSNLTSP-QTVPRLIDEIVINP--HYNRRRKDNDIAMMHLEFKV 102
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
Y +I PI LPE+ + F G+ AGWG + LQ DVP++ N +C++
Sbjct: 103 NYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTT-ADILQEADVPLLSNERCQQQM 161
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
I + M+CAGY G DSCQGDSGGPLM + RWFL G+ S GY CA +P
Sbjct: 162 PEYNIT----ENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRP 217
Query: 182 GIYHRVAYTVDWISYIMN 199
G+Y RV+ +WI ++
Sbjct: 218 GVYARVSRFTEWIQSFLH 235
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 219 bits (560), Expect = 1e-72
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 1 MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 60
+ R + LG++ + S + + V ++ + + P +D+A+LRL +
Sbjct: 43 FDKIKNWRNLIAVLGEHDL-SEHDG-DEQSRRVAQVIIPS--TYVPGTTNHDIALLRLHQ 98
Query: 61 PVQYMPHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQ 116
PV H+ P+CLPE+ +F +GWG L L ++VP + +
Sbjct: 99 PVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGAT-ALELMVLNVPRLMTQD 157
Query: 117 CERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
C + + G + I + M CAGY G+KDSC+GDSGGP G W+L GIVS G CA
Sbjct: 158 CLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCA 217
Query: 177 QQGQPGIYHRVAYTVDWISYIMNT 200
G G+Y RV+ ++W+ +M +
Sbjct: 218 TVGHFGVYTRVSQYIEWLQKLMRS 241
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 221 bits (564), Expect = 3e-72
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 12/200 (6%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRP 61
S + V LG + E + +R+++VHP Y + D+A+L L+
Sbjct: 136 EAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENS 192
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
V P++ PICLP+ + G G+ +G+G ++ L+ V +P+ + + CE W
Sbjct: 193 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENW 249
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQ 178
+ V M CAG+ +D+CQGDSGG + T RW GIVS G C++
Sbjct: 250 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR- 308
Query: 179 GQPGIYHRVAYTVDWISYIM 198
G Y +V VDWI M
Sbjct: 309 -GYGFYTKVLNYVDWIKKEM 327
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 221 bits (565), Expect = 1e-71
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRP 61
S + V LG + E + +R+++VHP Y + D+A+L L+
Sbjct: 204 EAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENS 260
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
V P++ PICLP+ + G G+ +G+G ++ L+ V +P+ + + CE W
Sbjct: 261 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENW 317
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQ 178
+ V M CAG+ +D+CQGDSGG + T RW GIVS G C++
Sbjct: 318 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR- 376
Query: 179 GQPGIYHRVAYTVDWISYIMN 199
G Y +V VDWI M
Sbjct: 377 -GYGFYTKVLNYVDWIKKEME 396
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 214 bits (547), Expect = 6e-71
Identities = 68/193 (35%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
+ + +Q+ G+ ++ V KI +H F D+++L+L
Sbjct: 50 DDYENPSGLQIVAGELDMSVNEGSEQ--IITVSKIILHE--NFDYNLLDNDISLLKLSGS 105
Query: 62 VQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
+ + ++API LPE+G GWG G P LQ V VP++ + C +
Sbjct: 106 LTFNDNVAPIALPEQGHTA-TGDVIVTGWGTTSEGGNT-PDVLQKVTVPLVSDEDCRADY 163
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
++ I D M+CAG G KDSCQGDSGGPL TG +L GIVS GY CA+ G P
Sbjct: 164 GADEI----LDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYP 219
Query: 182 GIYHRVAYTVDWI 194
G+Y V+Y VDWI
Sbjct: 220 GVYTEVSYHVDWI 232
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 212 bits (543), Expect = 3e-70
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ ++ V G++ I E V +I H F +D+A+L LD P+
Sbjct: 45 TGVKITVVAGEHNIEE-TEH-TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLN 102
Query: 66 PHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
++ PIC+ +K + G+ +GWG + R LQ + VP++D C R K
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRS-ALVLQYLRVPLVDRATCLRSTK 161
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
I + M CAG+ G +DSCQGDSGGP + E G FL GI+S G CA +G+ G
Sbjct: 162 FT-----ITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYG 216
Query: 183 IYHRVAYTVDWISYIM 198
IY +V+ V+WI
Sbjct: 217 IYTKVSRYVNWIKEKT 232
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 211 bits (540), Expect = 8e-70
Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 10/200 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
++ G ++ + P +++I +H + +D+A+++L P+
Sbjct: 48 GLPLQDVWRIYSGILELSDITKDTP--FSQIKEIIIHQ--NYKVSEGNHDIALIKLQAPL 103
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
+Y PI LP KG+ W GWG + + LQ V++P++ N +C++ +
Sbjct: 104 EYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEI-QNILQKVNIPLVTNEECQKRY 162
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
+ I M+CAGY+ G KD+C+GDSGGPL+ + G W L+GI S G CA++ QP
Sbjct: 163 QDY----KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQP 218
Query: 182 GIYHRVAYTVDWISYIMNTA 201
G+Y +VA +DWI ++
Sbjct: 219 GVYTKVAEYMDWILEKTQSS 238
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 209 bits (534), Expect = 8e-69
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 14/200 (7%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
A++ +V +GD N+ E V + H +FT + +D+AVLRL P+ +
Sbjct: 46 QAKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFR 101
Query: 66 PHIAPICLPEKG----EDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
++AP CLPE+ + G +G+G L+ ++VP +D C+
Sbjct: 102 MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQ-STRLKMLEVPYVDRNSCKLSS 160
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
I M CAGY +D+CQGDSGGP + +F+ GIVS G CA++G+
Sbjct: 161 SFI-----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKY 215
Query: 182 GIYHRVAYTVDWISYIMNTA 201
GIY +V + WI M T
Sbjct: 216 GIYTKVTAFLKWIDRSMKTR 235
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 208 bits (531), Expect = 2e-68
Identities = 67/197 (34%), Positives = 92/197 (46%), Gaps = 11/197 (5%)
Query: 5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
+ Q LG + + P +++I HP F YD+A+L L++P +Y
Sbjct: 53 SDPTQWTAFLGLHDQSQRSAP-GVQERRLKRIISHP--FFNDFTFDYDIALLELEKPAEY 109
Query: 65 MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
+ PI LP+ F G+ W GWG Q G LQ ++ +I+ CE
Sbjct: 110 SSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTG-ALILQKGEIRVINQTTCENLLPQ 168
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQGQPG 182
I MMC G+ G DSCQGDSGGPL +E GR F G+VS G CAQ+ +PG
Sbjct: 169 Q-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPG 223
Query: 183 IYHRVAYTVDWISYIMN 199
+Y R+ DWI
Sbjct: 224 VYTRLPLFRDWIKENTG 240
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 207 bits (530), Expect = 2e-68
Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 10/197 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
S + ++V G + E FGV++I +H ++ YD+A+L+L+ V
Sbjct: 48 GVESPKILRVYSGILNQSEIKEDTS--FFGVQEIIIHD--QYKMAESGYDIALLKLETTV 103
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
Y PI LP KGE + W GWG + ++ TLQ +P++ N +C++ +
Sbjct: 104 NYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKI-QNTLQKAKIPLVTNEECQKRY 162
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
+ + I +M+CAGYR G KD+C+GDSGGPL + W L+GI S G CAQ+ +P
Sbjct: 163 RGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERP 218
Query: 182 GIYHRVAYTVDWISYIM 198
G+Y V VDWI
Sbjct: 219 GVYTNVVEYVDWILEKT 235
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 207 bits (530), Expect = 3e-68
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 14/204 (6%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
A + + +G S + +H + D D+A+++L+ V
Sbjct: 44 QKHDASALDIRMGTLKRLSPHYT----QAWSEAVFIHEGYTHDAGFD-NDIALIKLNNKV 98
Query: 63 QYMPHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
+I PICLP K + G A+GWG Q G + L VD+PI+D+++C
Sbjct: 99 VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL--ARNLMYVDIPIVDHQKCTA 156
Query: 120 W-HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIGIVSAG-YSC 175
K + M+CAG G KDSC+GDSGG L+ T RWF+ GIVS G +C
Sbjct: 157 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNC 216
Query: 176 AQQGQPGIYHRVAYTVDWISYIMN 199
+ GQ G+Y +V + WI I++
Sbjct: 217 GEAGQYGVYTKVINYIPWIENIIS 240
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 207 bits (528), Expect = 7e-68
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
++++ V LG+Y + + ++++ VHP ++ D+A+L L +P
Sbjct: 46 ESKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHP--NYSKSTTDNDIALLHLAQPATLS 101
Query: 66 PHIAPICLPEKGEDFL-----GQFGWAAGWGALQAG----SRLRPKTLQAVDVPIIDNRQ 116
I PICLP+ G GQ GWG + R R L + +P++ + +
Sbjct: 102 QTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNE 161
Query: 117 CERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
C + + + M+CAG G +D+C+GDSGGP++ G WFL+G+VS G C
Sbjct: 162 CSEVMSNM-----VSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCG 216
Query: 177 QQGQPGIYHRVAYTVDWISYIMNTA 201
G+Y +V+ +DWI +
Sbjct: 217 LLHNYGVYTKVSRYLDWIHGHIRDK 241
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 206 bits (526), Expect = 9e-68
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ + + G + S ++ G+R+I VH K+ + YD+++ L PV
Sbjct: 45 TYKNPARWTASFGVTIKPSKMK------RGLRRIIVHE--KYKHPSHDYDISLAELSSPV 96
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
Y + +CLP+ +F G + G+GAL+ L+ V +ID C
Sbjct: 97 PYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYS-QNHLRQAQVTLIDATTCNEPQ 155
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQGQ 180
N I M+CAG G D+CQGDSGGPL+ + W+L GIVS G CA+ +
Sbjct: 156 AYNDA---ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNK 212
Query: 181 PGIYHRVAYTVDWISYIMN 199
PG+Y RV DWI+
Sbjct: 213 PGVYTRVTALRDWITSKTG 231
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 207 bits (528), Expect = 1e-67
Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 9/205 (4%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ +V LG + ++S E ++ I HP + + + D+A+L+L RP+
Sbjct: 45 SEHHKEAYEVKLGAHQLDSYSEDAK--VSTLKDIIPHP--SYLQEGSQGDIALLQLSRPI 100
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQA-GSRLRPKTLQAVDVPIIDNRQCERW 120
+ +I PI LP F G GWG + S L PK LQ ++VP+I C
Sbjct: 101 TFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSL 160
Query: 121 HKSNGINV---VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
+ + + ++M+CAGY G KD+CQGDSGGPL G W+L GIVS G +C
Sbjct: 161 YNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGA 220
Query: 178 QGQPGIYHRVAYTVDWISYIMNTAT 202
+ +PG+Y + WI +
Sbjct: 221 RNRPGVYTLASSYASWIQSKVTELQ 245
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 207 bits (528), Expect = 1e-67
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 21/208 (10%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ + V +G + + E + KI +HP + + D D+A+++L +PV +
Sbjct: 55 TENDLLVRIGKHSR-TRYERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFS 112
Query: 66 PHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRL-----RPKTLQAVDVPIIDNRQ 116
+I P+CLP++ G G GWG L+ +P LQ V++PI++
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 117 CERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLMMERT--GRWFLIGIVSA 171
C+ + I D M CAGY+ G D+C+GDSGGP +M+ RW+ +GIVS
Sbjct: 173 CKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW 227
Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMN 199
G C + G+ G Y V WI +++
Sbjct: 228 GEGCDRDGKYGFYTHVFRLKKWIQKVID 255
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 205 bits (524), Expect = 1e-67
Identities = 58/194 (29%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
+ + Q+ G S T + + VHP + + D+A+L+L
Sbjct: 43 VSGYAQSGFQIRAGSLSRTS-----GGITSSLSSVRVHPSYS----GNNNDLAILKLSTS 93
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
+ +I L G D + G AGWGA G P L V VPI+ C
Sbjct: 94 IPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ 153
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ 180
+ ++ I ++M CAG G KDSCQGDSGGP++ LIG VS G CA+
Sbjct: 154 YGTSAI----TNQMFCAGVSSGGKDSCQGDSGGPIV---DSSNTLIGAVSWGNGCARPNY 206
Query: 181 PGIYHRVAYTVDWI 194
G+Y V +I
Sbjct: 207 SGVYASVGALRSFI 220
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 207 bits (529), Expect = 1e-67
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 21/208 (10%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ + V +G + E + KI +HP + + D D+A+++L +PV +
Sbjct: 85 TENDLLVRIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFS 142
Query: 66 PHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRL-----RPKTLQAVDVPIIDNRQ 116
+I P+CLP++ G G GWG L+ +P LQ V++PI++
Sbjct: 143 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 202
Query: 117 CERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLMMERT--GRWFLIGIVSA 171
C+ + I D M CAGY+ G D+C+GDSGGP +M+ RW+ +GIVS
Sbjct: 203 CKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW 257
Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMN 199
G C + G+ G Y V WI +++
Sbjct: 258 GEGCDRDGKYGFYTHVFRLKKWIQKVID 285
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 204 bits (522), Expect = 3e-67
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 17/199 (8%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ + + T G + S+ A K+ P FT + D A+++L +P+
Sbjct: 41 GSGNNTSITATGGVVDLQSS----SAVKVRSTKVLQAP--GFTKETYGKDWALIKLAQPI 94
Query: 63 QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
P + AGWGA + G + L +VP + + C
Sbjct: 95 NQ-----PTLKIATTTAYNQGTFTVAGWGANREGGSQ-QRYLLKANVPFVSDAACRSSSS 148
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQGQP 181
++ +EM+CAGY +D+CQGDSGGP+ + W +GIVS G CA++G+
Sbjct: 149 FI----LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKY 204
Query: 182 GIYHRVAYTVDWISYIMNT 200
G+Y V+ I+ T
Sbjct: 205 GVYTEVSTFASAIASAART 223
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 215 bits (550), Expect = 3e-67
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
S + ++V G + E FGV++I +H ++ YD+A+L+L+ V
Sbjct: 435 GVESPKILRVYSGILNQSEIKEDTS--FFGVQEIIIHD--QYKMAESGYDIALLKLETTV 490
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
Y PICLP KG+ + W GWG + ++ TLQ +P++ N +C++ +
Sbjct: 491 NYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKI-QNTLQKAKIPLVTNEECQKRY 549
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
+ + I +M+CAGYR G KD+C+GDSGGPL + W L+GI S G CAQ+ +P
Sbjct: 550 RGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERP 605
Query: 182 GIYHRVAYTVDWISYIM 198
G+Y V VDWI
Sbjct: 606 GVYTNVVEYVDWILEKT 622
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 206 bits (525), Expect = 4e-67
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP- 61
+ V LG +NS + F V + +H + A D+A+L++
Sbjct: 73 DYPKKEDYIVYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKE 130
Query: 62 ---VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
Q I ICLP D G G+G + L P+ L+ V +I +R+C
Sbjct: 131 GRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC 190
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
++ H + +M+CA DSCQGDSGGPL+ GR L GIVS G CA
Sbjct: 191 QQPHYYGSE---VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCAL 247
Query: 178 QGQPGIYHRVAYTVDWISYIMN 199
+ +PG+Y RV++ + WI
Sbjct: 248 KDKPGVYTRVSHFLPWIRSHTK 269
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 206 bits (526), Expect = 5e-67
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 12/206 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPL---PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLD 59
++ G + P V KI +H K++ ++ D+A++++
Sbjct: 51 IKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHE--KYSASSEANDIALMKIT 108
Query: 60 RPVQYMPHIAPICLPEKGEDFL--GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
PV I P CLP+ Q W AGWG LQ +R LQ V +ID C
Sbjct: 109 PPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLC 168
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM--MERTGRWFLIGIVSAGYSC 175
NG I +CAGY G D+CQGDSGGPLM + ++GI S G C
Sbjct: 169 NSTRWYNGR---IRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGC 225
Query: 176 AQQGQPGIYHRVAYTVDWISYIMNTA 201
A+ +PG+Y ++WI+ + +
Sbjct: 226 ARAKRPGVYTSTWSYLNWIASKIGST 251
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 204 bits (522), Expect = 5e-67
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
++ S ++ LG + + E GV+ +HP ++ P DVA++ L
Sbjct: 58 SDLLSPSDFKIILGKHWRLRSDEN--EQHLGVKHTTLHP--QYDPNTFENDVALVELLES 113
Query: 62 VQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
+ PICLPE + G +GWG P+TL +++PI+D+ C++ +
Sbjct: 114 PVLNAFVMPICLPEGPQQE-GAMVIVSGWGKQFLQRF--PETLMEIEIPIVDHSTCQKAY 170
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIGIVSAGYSCAQQG 179
+ + +M+CAG + G KD+C GDSGGP++ G+W+L+G VS G C ++
Sbjct: 171 --APLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKD 228
Query: 180 QPGIYHRVAYTVDWISYIM 198
+ G+Y + + DWI +
Sbjct: 229 RYGVYSYIHHNKDWIQRVT 247
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 205 bits (524), Expect = 7e-67
Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 11/205 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL---- 58
++ V V LG + N + TFG+ K + + +D +D+ ++RL
Sbjct: 79 HSPPRDSVSVVLGQHFFNRTTDVTQ--TFGIEKYIPYTLYSVFNPSD-HDLVLIRLKKKG 135
Query: 59 DRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
DR + PICLPE G F G AGWG L +L+ VP++ + +C
Sbjct: 136 DRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC 195
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
I M+CAGY D+CQGDSGGPL E+ G +L GI+S G C +
Sbjct: 196 SSPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGR 252
Query: 178 QGQPGIYHRVAYTVDWISYIMNTAT 202
+PG+Y RVA VDWI+ +
Sbjct: 253 LHKPGVYTRVANYVDWINDRIRPPR 277
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 204 bits (521), Expect = 9e-67
Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 11/205 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL---- 58
++ V V LG + N + TFG+ K + + +D +D+ ++RL
Sbjct: 44 HSPPRDSVSVVLGQHFFNRTTDVTQ--TFGIEKYIPYTLYSVFNPSD-HDLVLIRLKKKG 100
Query: 59 DRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
DR + PICLPE G F G AGWG L +L+ VP++ + +C
Sbjct: 101 DRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC 160
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
I M+CAGY D+CQGDSGGPL E+ G +L GI+S G C +
Sbjct: 161 SSPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGR 217
Query: 178 QGQPGIYHRVAYTVDWISYIMNTAT 202
+PG+Y RVA VDWI+ +
Sbjct: 218 LHKPGVYTRVANYVDWINDRIRPPR 242
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 203 bits (519), Expect = 1e-66
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 11/195 (5%)
Query: 5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
++V G + + T V +H + + D+A+L L +
Sbjct: 49 VLPNNIRVIAGLWQQSD---TSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISL 105
Query: 65 MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
+I LP + G +GWG + L P LQ +P+I QC
Sbjct: 106 GGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNL-PDILQKSSIPVITTAQCTAAMVG 164
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS----AGYSCAQQG 179
G I+D +C G +C GDSGGPL G ++G+ S +G
Sbjct: 165 VGGAN-IWDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPD 222
Query: 180 QPGIYHRVAYTVDWI 194
P +Y RV+ + WI
Sbjct: 223 YPSVYTRVSAYLGWI 237
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 203 bits (518), Expect = 2e-66
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 10/201 (4%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP- 61
+ V LG +NS + F V + +H + A D+A+L++
Sbjct: 50 DYPKKEDYIVYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKE 107
Query: 62 ---VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
Q I I LP D G G+G + L P+ L+ V +I +R+C
Sbjct: 108 GRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC 167
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
++ H + +M+CA DSCQGDSGGPL+ GR L GIVS G CA
Sbjct: 168 QQPHYYGSE---VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCAL 224
Query: 178 QGQPGIYHRVAYTVDWISYIM 198
+ +PG+Y RV++ + WI
Sbjct: 225 KDKPGVYTRVSHFLPWIRSHT 245
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 207 bits (528), Expect = 2e-66
Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 17/207 (8%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD----RYDVAVLRLDRP 61
+ +V G S GV+ + H + + D+A++ L P
Sbjct: 166 VLSRWRVFAGAVAQASP----HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSP 221
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
+ +I P+CLP G+ + G+ GWG Q + LQ VPII N C
Sbjct: 222 LPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQ-AGVLQEARVPIISNDVCNGA 280
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM----MERTGRWFLIGIVSAGYSCA 176
I +M CAGY G D+CQGDSGGP + + RT RW L GIVS G CA
Sbjct: 281 DFYGNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCA 337
Query: 177 QQGQPGIYHRVAYTVDWISYIMNTATN 203
+PG+Y +V+ +WI + T +
Sbjct: 338 LAQKPGVYTKVSDFREWIFQAIKTHSE 364
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 208 bits (530), Expect = 2e-66
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 14/204 (6%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
A + + +G S + +H + D D+A+++L+ V
Sbjct: 205 QKHDASALDIRMGTLKRLSP----HYTQAWSEAVFIHEGYTHDAGFD-NDIALIKLNNKV 259
Query: 63 QYMPHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
+I PICLP K + G A+GWG Q G + L VD+PI+D+++C
Sbjct: 260 VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL--ARNLMYVDIPIVDHQKCTA 317
Query: 120 W-HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIGIVSAG-YSC 175
K + M+CAG G KDSC+GDSGG L+ T RWF+ GIVS G +C
Sbjct: 318 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNC 377
Query: 176 AQQGQPGIYHRVAYTVDWISYIMN 199
+ GQ G+Y +V + WI I++
Sbjct: 378 GEAGQYGVYTKVINYIPWIENIIS 401
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 202 bits (516), Expect = 4e-66
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ ++V L + + + LP V +I VHP +F D+A+L L+ PV
Sbjct: 49 DVKDLATLRVQLREQHLYYQDQLLP-----VSRIIVHP--QFYIIQTGADIALLELEEPV 101
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRL-RPKTLQAVDVPIIDNRQCERW 120
+ + LP E F G W GWG + L P L+ V VPI++N C+
Sbjct: 102 NISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAK 161
Query: 121 HKSNGIN----VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
+ +I D+M+CAG +DSCQGDSGGPL+ + G W G+VS G CA
Sbjct: 162 YHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCA 219
Query: 177 QQGQPGIYHRVAYTVDWISYIMNTA 201
Q +PGIY RV Y +DWI + +
Sbjct: 220 QPNRPGIYTRVTYYLDWIHHYVPKK 244
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 201 bits (514), Expect = 8e-66
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 14/196 (7%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ + LG + ++ + V ++ P D+ +++L RP
Sbjct: 46 DLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG--------SDLVLMKLARPAVLD 97
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
++ I LP G GWG + L+ + I+ N +C + H+
Sbjct: 98 DFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINY--DGLLRVAHLYIMGNEKCSQHHRGK 155
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
+ + +CAG C+GD GGPL+ E+ ++G++ G CA +PGI+
Sbjct: 156 VT---LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIF 212
Query: 185 HRVAYTVDWISYIMNT 200
RVAY WI I+ T
Sbjct: 213 VRVAYYAKWIHKIILT 228
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 201 bits (513), Expect = 1e-65
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ +V LG + E + GV I VH K+ R D+A+++L V+
Sbjct: 62 NTLTYRVALGKNNLEVEDEA-GSLYVGVDTIFVHE--KWNSFLVRNDIALIKLAETVELG 118
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
I CLP +G + GWG L + LQ P++D C +
Sbjct: 119 DTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPI-AAELQQGLQPVVDYATCSQRDWWG 177
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPG 182
+ + M+CAG G +C GDSGGPL + G+W + GIVS +G SC +P
Sbjct: 178 TT---VKETMVCAGGDGV-ISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPT 233
Query: 183 IYHRVAYTVDWISYIM 198
++ RV+ +DWI+ +
Sbjct: 234 VFTRVSAYIDWINQKL 249
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 200 bits (510), Expect = 3e-65
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 10/198 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+V +G++ +N GV+KI VHPY+ A YD+A+LRL + V
Sbjct: 49 RELTFRVVVGEHNLNQNNGT--EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLN 106
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
++ LP G + GWG + +L +TLQ +P +D C
Sbjct: 107 SYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQL-AQTLQQAYLPTVDYAICSSSSYWG 165
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPG 182
+ + M+CAG G + CQGDSGGPL G++ + G+ S + C +P
Sbjct: 166 ST---VKNSMVCAGGDGV-RSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPT 221
Query: 183 IYHRVAYTVDWISYIMNT 200
++ RV+ + WI+ ++ +
Sbjct: 222 VFTRVSAYISWINNVIAS 239
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 205 bits (523), Expect = 5e-65
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 21/208 (10%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ + V +G + E + KI +HP + + D D+A+++L +PV +
Sbjct: 220 TENDLLVRIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFS 277
Query: 66 PHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRLR-----PKTLQAVDVPIIDNRQ 116
+I P+CLP++ G G GWG L+ P LQ V++PI++
Sbjct: 278 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 337
Query: 117 CERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLMMERT--GRWFLIGIVSA 171
C+ + I D M CAGY+ G D+C+GDSGGP +M+ RW+ +GIVS
Sbjct: 338 CKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW 392
Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMN 199
G C + G+ G Y V WI +++
Sbjct: 393 GEGCDRDGKYGFYTHVFRLKKWIQKVID 420
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 198 bits (506), Expect = 1e-64
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 10/199 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
++R QV LG+Y + + VHP + A D+A+++L R Q
Sbjct: 47 TSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 106
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
+ LP G+ + +GWG L G L P LQ +P +D C +W
Sbjct: 107 DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPL-PDKLQQALLPTVDYEHCSQWDWWG 165
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVS--AGYSCAQQGQP 181
+ M+CAG + C GDSGGPL G W + G+ S + + C +P
Sbjct: 166 IT---VKKTMVCAGG--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKP 220
Query: 182 GIYHRVAYTVDWISYIMNT 200
++ RV+ +DWI + +
Sbjct: 221 TVFTRVSAFIDWIDETIAS 239
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 198 bits (505), Expect = 2e-64
Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 18/207 (8%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLD--- 59
+ V LG E F V K VH +F D+A+L+L
Sbjct: 51 ERFPPHHLTVILGRTYRVVPGEEEQ--KFEVEKYIVHK--EFDDDTYDNDIALLQLKSDS 106
Query: 60 -RPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
R Q + +CLP +G+G +A S + L+ V + + +C
Sbjct: 107 SRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRC 166
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGG------AKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
H N + D M+CAG D+CQGDSGGPL+ GR L+GI+S
Sbjct: 167 TSQHLLNRT---VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISW 223
Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIM 198
G C Q+ PG+Y +V +DWI M
Sbjct: 224 GLGCGQKDVPGVYTKVTNYLDWIRDNM 250
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 197 bits (502), Expect = 4e-64
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 16/198 (8%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
+ +V LG N V K+ P + +L+L+R
Sbjct: 43 SCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG--------SQLVLLKLERS 94
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
V +A ICLP + G AGWG + L + +I N++C
Sbjct: 95 VTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN--DTVLNVALLNVISNQECNIK 152
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ 180
H+ + + MC +C+GD GGPL W L GI+ CA+
Sbjct: 153 HRGR-----VRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRW 207
Query: 181 PGIYHRVAYTVDWISYIM 198
P ++ RV+ VDWI +M
Sbjct: 208 PAVFTRVSVFVDWIHKVM 225
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 199 bits (509), Expect = 5e-64
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD-----RYDVAVLRLDR 60
R+ + +G + ++ + + +HP +K + D+A++RL
Sbjct: 124 GNREPTMYVGSTSVQTS-RLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKD 182
Query: 61 PVQYMPHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
PV+ P ++PICLP D+ G G +GWG + R L+A +P+ R+C
Sbjct: 183 PVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD--RAVRLKAARLPVAPLRKC 240
Query: 118 ERWHKSNGI----NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER---TGRWFLIGIVS 170
+ V M+CAG G DSC+GDSGG ++ +++ G+VS
Sbjct: 241 KEVKVEKPTADAEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 299
Query: 171 AGYSCAQQGQPGIYHRVAYTVDWISYIMNTA 201
G C G G+Y RV VDWI M
Sbjct: 300 WGPQC---GTYGLYTRVKNYVDWIMKTMQEN 327
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 202 bits (514), Expect = 6e-64
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 31/219 (14%)
Query: 3 NTASARQVQVTLGDYVINSAVEP----------LPAYTFGVRKINVHPYFKFTPQADRYD 52
+ ++ LG++ I++ + P G+ K +H K+ + +D
Sbjct: 166 HGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHE--KYDARHIMHD 223
Query: 53 VAVLRLDRPVQYMPHIAPICLPEKGE----DFLGQFGWAAGWGALQAGSRLRPKTLQAVD 108
+A+L+L+R V + HI PICLP E + GWG + GS L +
Sbjct: 224 IALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS--SSDVLLQAN 281
Query: 109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM------ERTGR 162
VP+ C + ++ + +C G +DSC+GDSGGPL E +
Sbjct: 282 VPLQPRSACSQAYRRA-----VPLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLGEYAPK 335
Query: 163 WFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNT 200
GIVS G +C Q PG+Y V V WI+ M +
Sbjct: 336 MVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMAS 374
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 196 bits (500), Expect = 1e-63
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ +V LG + + + V ++ + P D+A+L+L P
Sbjct: 63 KSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEPTR--------KDIALLKLSSPA 112
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
+ P CLP + GWG Q L+ +P+I+N+ C R+
Sbjct: 113 VITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQLPVIENKVCNRYE 170
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
NG + +CAG+ G DSCQGD+GGPL+ ++ L G+ S G CA+ +P
Sbjct: 171 FLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKP 227
Query: 182 GIYHRVAYTVDWISYIM 198
G+Y RV+ V WI +M
Sbjct: 228 GVYVRVSRFVTWIEGVM 244
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 195 bits (499), Expect = 1e-63
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
SAR +V LG++ +N+ V + +H + A YD+A+LRL+
Sbjct: 49 SARTWRVVLGEHNLNTNEGK--EQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLN 106
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
+ LP + + GWG G L +L+ +P +D+ C
Sbjct: 107 SAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPL-SDSLKQAWLPSVDHATCSSSGWWG 165
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPG 182
+ M+CAG GGA C GDSGGPL + G +++ G+ S + C +P
Sbjct: 166 ST---VKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPT 220
Query: 183 IYHRVAYTVDWISYIM 198
++ RV+ + W++ IM
Sbjct: 221 VFTRVSAYISWMNGIM 236
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 194 bits (495), Expect = 7e-63
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 12/189 (6%)
Query: 11 QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
V G++ S+ E + + K+ + K+ D+ +L+L + ++
Sbjct: 65 VVVAGEFDQGSSSEKIQ--KLKIAKVFKNS--KYNSLTINNDITLLKLSTAASFSQTVSA 120
Query: 71 ICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
+CLP +DF G GWG + + P LQ +P++ N C+++ +
Sbjct: 121 VCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK----- 175
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
I D M+CAG SC GDSGGPL+ ++ G W L+GIVS G S PG+Y RV
Sbjct: 176 IKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTA 233
Query: 190 TVDWISYIM 198
V+W+ +
Sbjct: 234 LVNWVQQTL 242
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 193 bits (492), Expect = 1e-62
Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
A++ +V +GD N+ E V + H +FT + +D+AVLRL P+ +
Sbjct: 46 QAKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFR 101
Query: 66 PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
++AP LP G +GWG + P LQ +D P++ +CE +
Sbjct: 102 MNVAPASLPTA-PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGK- 159
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
I M C G+ G KDSCQGDSGGP++ L G+VS G CAQ+ +PG+Y
Sbjct: 160 ----ITSNMFCVGFLEGGKDSCQGDSGGPVVC----NGQLQGVVSWGDGCAQKNKPGVYT 211
Query: 186 RVAYTVDWISYIMNTAT 202
+V V WI + +
Sbjct: 212 KVYNYVKWIKNTIAANS 228
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 192 bits (491), Expect = 2e-62
Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 15/200 (7%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
+ + + G + + +KI ++ P + + AV+ + P
Sbjct: 43 VDGTKPSDISIHYGSSYRTT-----KGTSVMAKKI-YIV--RYHPLTMQNNYAVIETEMP 94
Query: 62 VQYMPH-IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
++ I LP D +GWG+ S L + ++D + CE
Sbjct: 95 IKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEE 154
Query: 120 WHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQG 179
+K + IYD + CAG GD+G P + L+G+ S S
Sbjct: 155 QYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN----GTLVGVASYISSMP-SE 209
Query: 180 QPGIYHRVAYTVDWISYIMN 199
P ++ RV Y V I I++
Sbjct: 210 FPSVFLRVGYYVLDIKDIIS 229
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 192 bits (491), Expect = 2e-62
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 11/197 (5%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
S+R +V LG + +++ + V K+ VH + ++ D+A+L+L PV
Sbjct: 49 SSRTYRVVLGRHSLSTNEPG--SLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLT 106
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
I CLP G + GWG LQ P LQ + ++D C +
Sbjct: 107 DKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGAS-PDILQQGQLLVVDYATCSKPGWWG 165
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVS--AGYSCAQQGQP 181
+ M+CAG G SC GDSGGPL G+W + GIVS + C +P
Sbjct: 166 ST---VKTNMICAGGDGI-ISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKP 221
Query: 182 GIYHRVAYTVDWISYIM 198
++ RV+ +DWI+ ++
Sbjct: 222 SVFTRVSNYIDWINSVI 238
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 191 bits (487), Expect = 9e-62
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 10/197 (5%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
+ V LG + + S E T ++K + T D+ +++L
Sbjct: 47 RFTKGQSPTVVLGAHSL-SKNEA-SKQTLEIKKFIPFS--RVTSDPQSNDIMLVKLQTAA 102
Query: 63 QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
+ H+ + + K G GWGA S TL+ V V ++ + C
Sbjct: 103 KLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSY 162
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
NG + I +M+CAG G KDSC+GD+GGPL+ + IVS G+ C +PG
Sbjct: 163 YNG-DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC----KGVFHAIVSGGHECGVATKPG 217
Query: 183 IYHRVAYT-VDWISYIM 198
IY + WI +
Sbjct: 218 IYTLLTKKYQTWIKSNL 234
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 189 bits (483), Expect = 3e-61
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
Q+++ LG + ++S P TF ++ HP +K A D+A+L+LD V+
Sbjct: 46 RMAQLRLVLGLHTLDS-----PGLTFHIKAAIQHPRYK-PVPALENDLALLQLDGKVKPS 99
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
I P+ LP K + G AGWG G RL + L+ +D+ ++D R C N
Sbjct: 100 RTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRL-SRVLRELDLQVLDTRMCNNSRFWN 158
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGI 183
G + M+C + C+GDSGGPL+ L G++S C +P +
Sbjct: 159 GS---LSPSMVCLAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSFSSRVCTDIFKPPV 213
Query: 184 YHRVAYTVDWISYIM 198
VA V WI +
Sbjct: 214 ATAVAPYVSWIRKVT 228
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 187 bits (477), Expect = 2e-60
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 20/196 (10%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
++ +++V +G ++ + V V+ + R DVA++ L P+
Sbjct: 45 GLSNLNRLKVHVGTNYLSE-----SGDVYDVEDAVVNK--NYDDFLLRNDVALVHLTNPI 97
Query: 63 QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
++ + PI L ED GWG+ + G P LQ +++ + +QCER
Sbjct: 98 KFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNT-PNALQEIELIVHPQKQCERDQW 156
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
+ D +C + G + +C GDSGGPL+ IGIVS G CA G+P
Sbjct: 157 R------VIDSHICTLTKRG-EGACHGDSGGPLVAN----GAQIGIVSFGSPCA-LGEPD 204
Query: 183 IYHRVAYTVDWISYIM 198
+Y RV+ V WI+ +
Sbjct: 205 VYTRVSSFVSWINANL 220
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 186 bits (476), Expect = 3e-60
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+QV LG+ IN K VHP + D+ +++L
Sbjct: 44 SGIQVRLGEDNINVVEGN--EQFISASKSIVHP--SYNSNTLNNDIMLIKLKSAASLNSR 99
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
+A I LP G +GWG ++ P L+ + PI+ + C+ +
Sbjct: 100 VASISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
I M CAGY G KDSCQGDSGGP++ L GIVS G CAQ+ +PG+Y +V
Sbjct: 156 --ITSNMFCAGYLEGGKDSCQGDSGGPVVCS----GKLQGIVSWGSGCAQKNKPGVYTKV 209
Query: 188 AYTVDWISYIMNT 200
V WI + +
Sbjct: 210 CNYVSWIKQTIAS 222
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 194 bits (494), Expect = 1e-59
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 17/200 (8%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY- 64
+ Q+ V +I H + + D+A++ + +
Sbjct: 368 KTHRYQIWTTVVDWIHPDLK-RIVIEYVDRIIFHE--NYNAGTYQNDIALIEMKKDGNKK 424
Query: 65 ---MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
+P P C+P F +GWG + R +LQ +V +I N C ++
Sbjct: 425 DCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNER--VFSLQWGEVKLISN--CSKF 480
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQG 179
+ + EM CAG G+ D+C+GDSGGPL+ M+ ++ G+VS G +C +
Sbjct: 481 YGNR----FYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPE 536
Query: 180 QPGIYHRVAYTVDWISYIMN 199
PG+Y +VA DWISY +
Sbjct: 537 FPGVYTKVANYFDWISYHVG 556
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 185 bits (472), Expect = 1e-59
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 13/199 (6%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ ++ LG + K D+ ++RLD PV+ H
Sbjct: 47 KNFRIKLGMHSK-KVPNEDEQTRVPKEKFFCLS--SKNYTLWDKDIMLIRLDSPVKNSKH 103
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
IAP LP G GWG + P V++ +++ C +
Sbjct: 104 IAPFSLPSSPPSV-GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYP--EFE 160
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SCAQQGQPGIYHR 186
+ +CAG G KD+C+GDSGGPL+ GI S G CAQ +P Y +
Sbjct: 161 LPATSRTLCAGILEGGKDTCKGDSGGPLIC----NGQFQGIASWGDDPCAQPHKPAAYTK 216
Query: 187 VAYTVDWISYIM--NTATN 203
V +DWI I+ NT +
Sbjct: 217 VFDHLDWIENIIAGNTDAS 235
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 184 bits (470), Expect = 2e-59
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ V LG + K HP ++ Q D+ +++L+ +
Sbjct: 45 NEYTVHLGSDTLGDRRAQ----RIKASKSFRHP--GYSTQTHVNDLMLVKLNSQARLSSM 98
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
+ + LP + + G +GWG + P L VDV +I + C + +K
Sbjct: 99 VKKVRLPSR-CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD---- 153
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHR 186
++ + M+CAG K++C GDSGGPL+ R L G+VS G + C Q PG+Y +
Sbjct: 154 -LLENSMLCAGIPDSKKNACNGDSGGPLVC----RGTLQGLVSWGTFPCGQPNDPGVYTQ 208
Query: 187 VAYTVDWISYIMNT 200
V WI+ M
Sbjct: 209 VCKFTKWINDTMKK 222
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 185 bits (472), Expect = 6e-59
Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 23/199 (11%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
R + V + + ++VH ++ A D+++L L+ P+Q
Sbjct: 98 LHRNITVKTYFNRTSQDPL-----MIKITHVHVHM--RYDADAGENDLSLLELEWPIQCP 150
Query: 66 PHIAPICLPEKG--EDFL--GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
P+C PEK E L G +GW +L V +++ +C +
Sbjct: 151 GAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDL---GNSLTTRPVTLVEGEECGQVL 207
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
NV + C + + G + E G WFL G++ + Q
Sbjct: 208 -----NVTVTTRTYCER---SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHM 258
Query: 182 GIYHRVAYTVDWISYIMNT 200
+ +V+ W IMN
Sbjct: 259 VLVTKVSRYSLWFKQIMNA 277
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 183 bits (466), Expect = 1e-58
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
R +++ LG + + K P D+ ++RL RPV Y H
Sbjct: 47 RNIRIKLGMHSK-NIRNEDEQIRVPRGKYFCLNTK--FPNGLDKDIMLIRLRRPVTYSTH 103
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
IAP+ LP + G GWG + + P ++ I+ ++ CE + +
Sbjct: 104 IAPVSLPSRSRGV-GSRCRIMGWGKISTTTY--PDVPHCTNIFIVKHKWCEPLYPWVPAD 160
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR 186
+CAG G +D+C GDSGGPL+ + GIV+ G C Q +P +Y +
Sbjct: 161 ----SRTLCAGILKGGRDTCHGDSGGPLICN----GEMHGIVAGGSEPCGQHLKPAVYTK 212
Query: 187 VAYTVDWISYIM--NTA 201
V +WI I+ N
Sbjct: 213 VFDYNNWIQSIIAGNRT 229
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 182 bits (464), Expect = 2e-58
Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+V+V LG++ I ++ HP ++ D+ +++L +P +
Sbjct: 44 SRVEVRLGEHNIKVTEGS--EQFISSSRVIRHP--NYSSYNIDNDIMLIKLSKPATLNTY 99
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
+ P+ LP G +GWG + + LQ +++PI+ C +
Sbjct: 100 VQPVALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGM--- 154
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
I + M CAGY G KDSCQGDSGGP++ L G+VS GY CA+ G PG+Y +V
Sbjct: 155 --ITNAMFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPGNPGVYAKV 208
Query: 188 AYTVDWISYIMNT 200
DW++ M +
Sbjct: 209 CIFNDWLTSTMAS 221
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 184 bits (470), Expect = 2e-58
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)
Query: 30 TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG--EDFL--GQFG 85
+ ++VH ++ A D+++L L+ P+Q P+C PEK E L G
Sbjct: 158 MIKITHVHVHM--RYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRG 215
Query: 86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKD 145
+GW +L V +++ +C + NV + C +
Sbjct: 216 LLSGWARNGTDL---GNSLTTRPVTLVEGEECGQVL-----NVTVTTRTYCER---SSVA 264
Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
+ G + E G WFL G++ + Q + +V+ W IMN
Sbjct: 265 AMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 181 bits (462), Expect = 4e-58
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
A+ +VQV LG + + S EP + V + HP P +D+ +L+L
Sbjct: 46 AADGKVQVLLGAHSL-SQPEP-SKRLYDVLRAVPHP--DSQPDTIDHDLLLLQLSEKATL 101
Query: 65 MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
P + P+ D G AGWG + R P +LQ V +P++D C R
Sbjct: 102 GPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR-PDSLQHVLLPVLDRATCNRRTHH 160
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
+G I + +MCA +DSC+GD+GGPL+ L G+V++G C + +PG
Sbjct: 161 DGA---ITERLMCAE--SNRRDSCKGDAGGPLV----CGGVLEGVVTSGSRVCGNRKKPG 211
Query: 183 IYHRVAYTVDWISYIM 198
IY RVA WI ++
Sbjct: 212 IYTRVASYAAWIDSVL 227
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 180 bits (460), Expect = 7e-58
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ +V LG Y ++ E F K HP ++ D+ +++L+R ++
Sbjct: 46 KVFRVRLGHYSLSPVYES-GQQMFQGVKSIPHP--GYSHPGHSNDLMLIKLNRRIRPTKD 102
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
+ PI + G +GWG ++ PK LQ +++ ++ ++CE +
Sbjct: 103 VRPINVSSH-CPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQ--- 158
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHR 186
I D M CAG + G +DSCQGDSGGP++ L G+VS G Y CA+ +PG+Y
Sbjct: 159 --IDDTMFCAGDKAG-RDSCQGDSGGPVVCN----GSLQGLVSWGDYPCARPNRPGVYTN 211
Query: 187 VAYTVDWISYIMNTAT 202
+ WI + +
Sbjct: 212 LCKFTKWIQETIQANS 227
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 180 bits (459), Expect = 1e-57
Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+++ LG + + + F K D+ ++RL+RPV+ H
Sbjct: 44 GNMRIYLGMHNL-KVLNKDALRRFPKEKYFCLN--TRNDTIWDKDIMLIRLNRPVRNSAH 100
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
IAP+ LP G GWG + + + P ++ I+D C+ +K
Sbjct: 101 IAPLSLPSNPPSV-GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG---- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR 186
+ +CAG G KD+C+GDSGGPL+ GI+S G + CAQ +PGIY +
Sbjct: 156 --LAATTLCAGILEGGKDTCKGDSGGPLICNGQ----FQGILSVGGNPCAQPRKPGIYTK 209
Query: 187 VAYTVDWISYIM--NTATN 203
V DWI I+ NT
Sbjct: 210 VFDYTDWIQSIISGNTDAT 228
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 179 bits (457), Expect = 2e-57
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRPVQYMP 66
++ V LGD+ + + + P V + HP Y P+ +D+ ++RL
Sbjct: 45 QKYSVRLGDHSL-QSRDQ-PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGD 102
Query: 67 HIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
+ P+ L +GQ +GWG + + P TL +V I +CER +
Sbjct: 103 KVKPVQLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGK-- 159
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYH 185
I + M+CAG G D+CQGDSGGPL+ + L GI S G C + +PG+Y
Sbjct: 160 ---ITEGMVCAGSSNG-ADTCQGDSGGPLVCD----GMLQGITSWGSDPCGKPEKPGVYT 211
Query: 186 RVAYTVDWISYIMN 199
++ WI M+
Sbjct: 212 KICRYTTWIKKTMD 225
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 178 bits (455), Expect = 4e-57
Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 20/199 (10%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
+ + + P + + + D+A+L L RP
Sbjct: 45 VFDQKPETIVIQYESTNLWED----PGKSDPYVSHVYLS--FYRQETMENDIAILELSRP 98
Query: 62 VQY-MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
++ P LP+ G +G+G Q L++ + ++D +C
Sbjct: 99 LKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPK-DHDLKSAQLTVVDLDECRT 157
Query: 120 WHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQG 179
+ + ++ CA G GD+G P + + L+G+ + +G
Sbjct: 158 KYGPIFL----SLQVFCAQKVG--VSLESGDAGDPTVQQ----DTLVGVAAYFPKRP-EG 206
Query: 180 QPGIYHRVAYTVDWISYIM 198
P ++ +V V WI I+
Sbjct: 207 APEVFTKVGSYVSWIQDII 225
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 178 bits (454), Expect = 7e-57
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 13/193 (6%)
Query: 11 QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
Q+ LG + E T ++ + P + D+ +++LD V HI P
Sbjct: 48 QMKLGVHSKKVLNED--EQTRNPKEKFICPNK-KNDEVLDKDIMLIKLDSRVSNSEHIVP 104
Query: 71 ICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVI 130
+ LP G GWG++ P + ++D+ C+ + +
Sbjct: 105 LSLPSSPPSV-GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL----LT 159
Query: 131 YDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAY 189
+CAG G KD+C GDSGGPL+ GIVS G + C Q +PG+Y +V
Sbjct: 160 EYRTLCAGILEGGKDTCGGDSGGPLICN----GQFQGIVSFGAHPCGQGLKPGVYTKVFD 215
Query: 190 TVDWISYIMNTAT 202
WI I+ T
Sbjct: 216 YNHWIQSIIAGNT 228
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 177 bits (451), Expect = 2e-56
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ LG + + + EP + HP ++ D+ +++LD V
Sbjct: 45 NSYTIGLGLHSLEADQEP-GSQMVEASLSVRHP--EYNRPLLANDLMLIKLDESVSESDT 101
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
I I + + G +GWG L G P LQ V+V ++ C + +
Sbjct: 102 IRSISIASQ-CPTAGNSCLVSGWGLLANGRM--PTVLQCVNVSVVSEEVCSKLYDP---- 154
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR 186
+ + M CAG KDSC GDSGGPL+ +L G+VS G + C Q G PG+Y
Sbjct: 155 -LYHPSMFCAGGGQDQKDSCNGDSGGPLIC----NGYLQGLVSFGKAPCGQVGVPGVYTN 209
Query: 187 VAYTVDWISYIMN 199
+ +WI +
Sbjct: 210 LCKFTEWIEKTVQ 222
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 176 bits (449), Expect = 4e-56
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 14/198 (7%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
++ QV LG + I + EP V+K +P + P D+ +L+L + +
Sbjct: 46 KRSQVILGAHSI-TREEP-TKQIMLVKKEFPYP--CYDPATREGDLKLLQLTEKAKINKY 101
Query: 68 IAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
+ + LP+KG+D G AGWG + TL+ V++ IID + C + N
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASW-SDTLREVEITIIDRKVCNDRNHYNF- 159
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQPGIY 184
N VI M+CAG G +DSC GDSG PL+ G+ S G C PG+Y
Sbjct: 160 NPVIGMNMVCAGSLRGGRDSCNGDSGSPLL----CEGVFRGVTSFGLENKCGDPRGPGVY 215
Query: 185 HRVAYT-VDWISYIMNTA 201
++ ++WI + A
Sbjct: 216 ILLSKKHLNWIIMTIKGA 233
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 187 bits (476), Expect = 1e-55
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 16/198 (8%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
+ +V LG + + + V ++ + P D+A+L+L P
Sbjct: 606 EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEPTR--------KDIALLKLSSP 655
Query: 62 VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
+ P CLP + GWG Q L+ +P+I+N+ C R+
Sbjct: 656 AVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQLPVIENKVCNRY 713
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ 180
NG + +CAG+ G DSCQGDSGGPL+ ++ L G+ S G CA+ +
Sbjct: 714 EFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNK 770
Query: 181 PGIYHRVAYTVDWISYIM 198
PG+Y RV+ V WI +M
Sbjct: 771 PGVYVRVSRFVTWIEGVM 788
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 175 bits (446), Expect = 2e-55
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 22/201 (10%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRL 58
+ QV LG EP V K HP F D+ +LRL
Sbjct: 48 DKYQVWLGKNNF-LEDEP-SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 105
Query: 59 DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
+P + PI LP + G A+GWG+ P LQ V++ ++ N C+
Sbjct: 106 SKPADITDVVKPITLPTEEPKL-GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD 164
Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQ 177
+ H+ + D M+CAG G +C+ DSGGPL+ + L GI S G C +
Sbjct: 165 KAHEMK-----VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGPEPCGE 215
Query: 178 QGQPGIYHRVAYTVDWISYIM 198
+P +Y ++ WI M
Sbjct: 216 PTEPSVYTKLIKFSSWIRETM 236
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 174 bits (443), Expect = 3e-55
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ VTLG + I E R+ HP ++ + + D+ +L+L R V+ +
Sbjct: 48 SNINVTLGAHNI-QRREN-TQQHITARRAIRHP--QYNQRTIQNDIMLLQLSRRVRRNRN 103
Query: 68 IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
+ P+ LP E G AGWG + TL+ V + + +RQC R S
Sbjct: 104 VNPVALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQCLRIFGS--- 158
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
+C G R K + +GDSGGPL+ GIVS G S P ++ R
Sbjct: 159 --YDPRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVSYGKSSGV--PPEVFTR 210
Query: 187 VAYTVDWISYIMNT 200
V+ + WI M +
Sbjct: 211 VSSFLPWIRTTMRS 224
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 174 bits (443), Expect = 4e-55
Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRL 58
+ + LG + + E F V HP + +D+ +LRL
Sbjct: 45 NKSVILLGRHSL-FHPED-TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRL 102
Query: 59 DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
P + + + LP + G +A+GWG+++ L PK LQ VD+ +I N C
Sbjct: 103 SEPAELTDAVKVMDLPTQEPAL-GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCA 161
Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ 177
+ H + M+CAG G K +C GDSGGPL+ L GI S G CA
Sbjct: 162 QVHPQK-----VTKFMLCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSWGSEPCAL 212
Query: 178 QGQPGIYHRVAYTVDWISYIM 198
+P +Y +V + WI +
Sbjct: 213 PERPSLYTKVVHYRKWIKDTI 233
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 173 bits (442), Expect = 4e-55
Identities = 58/197 (29%), Positives = 76/197 (38%), Gaps = 17/197 (8%)
Query: 4 TASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
A V V LG + I E T VH + D+AV+RL PV
Sbjct: 43 MDGAGFVDVVLGAHNIRED-EA-TQVTIQSTDFTVHE--NYNSFVISNDIAVIRLPVPVT 98
Query: 64 YMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
IA + LP +G GWG + L+ VDVPI+ N C+ +
Sbjct: 99 LTAAIATVGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI 157
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
+ D +C GG K +C GDSGGPL GI S G + + G P
Sbjct: 158 ------VTDGNICIDSTGG-KGTCNGDSGGPLN----YNGLTYGITSFGAAAGCEAGYPD 206
Query: 183 IYHRVAYTVDWISYIMN 199
+ RV Y +DWI
Sbjct: 207 AFTRVTYFLDWIQTQTG 223
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 173 bits (441), Expect = 5e-55
Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 17/193 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ VTLG + I E VR+ HP + + D+ +L+L R
Sbjct: 48 SSINVTLGAHNI-MERER-TQQVIPVRRPIPHP--DYNDETLANDIMLLKLTRKADITDK 103
Query: 68 IAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
++PI LP + G AGWG L LQ VD+ + +C K+
Sbjct: 104 VSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPS-TDKLQEVDLEVQSEEKCIARFKNY-- 160
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
I +CAG K+S GDSGGPL+ GIVS G + P +Y R
Sbjct: 161 ---IPFTQICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVSYGRNDGT--TPDVYTR 211
Query: 187 VAYTVDWISYIMN 199
++ + WI M
Sbjct: 212 ISSFLSWIHSTMR 224
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 181 bits (460), Expect = 6e-55
Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 51/239 (21%)
Query: 2 TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQADRYDVA 54
T ++V++G + + HP + P+ YDVA
Sbjct: 262 TVDDKEHSIKVSVGGEKR----------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVA 311
Query: 55 VLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGS-----------RLRPK 102
+++L ++Y I PICLP + + K
Sbjct: 312 LIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEK 371
Query: 103 TLQAVDVPIIDN---RQCERWHK-------SNGINVVIYDEMMCAGYRGGA--KDSCQGD 150
L +V I + CER + I+ V+ +C G ++C+GD
Sbjct: 372 KLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGD 431
Query: 151 SGGPLMMERTGRWFLIGIVSAGYS--CAQQGQ--------PGIYHRVAYTVDWISYIMN 199
SGGPL++ + R+ +G++S G C Q + + + + W+ +
Sbjct: 432 SGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ 490
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 173 bits (441), Expect = 6e-55
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+ VTLG + I EP V++ HP + P+ D+ +L+L+R +
Sbjct: 48 SSINVTLGAHNI-KEQEP-TQQFIPVKRPIPHP--AYNPKNFSNDIMLLQLERKAKRTRA 103
Query: 68 IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
+ P+ LP GQ AGWG + TLQ V + + ++R+CE +
Sbjct: 104 VQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKH-SHTLQEVKMTVQEDRKCESDLRHY-- 160
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
+C G K S +GDSGGPL+ GIVS G + P +
Sbjct: 161 --YDSTIELCVGDPEIKKTSFKGDSGGPLV----CNKVAQGIVSYGRNNGM--PPRACTK 212
Query: 187 VAYTVDWISYIM 198
V+ V WI M
Sbjct: 213 VSSFVHWIKKTM 224
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 173 bits (441), Expect = 7e-55
Identities = 62/201 (30%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRL 58
Q +V LG + EP A V K HP F D+ +LRL
Sbjct: 45 DQYEVWLGKNKL-FQEEP-SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRL 102
Query: 59 DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
+P + PI LP K E G A+GWG++ +P LQ V + ++ N C
Sbjct: 103 SKPADITDVVKPIALPTK-EPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161
Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQ 177
+ + + D M+CAG GG KD+C+ DSGGPL+ + L G S G C +
Sbjct: 162 KVYLQK-----VTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYGPVPCGK 212
Query: 178 QGQPGIYHRVAYTVDWISYIM 198
G P IY + WI M
Sbjct: 213 PGVPAIYTNLIKFNSWIKDTM 233
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 173 bits (441), Expect = 7e-55
Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF---------KFTPQADRYDVAVLRL 58
QV LG + EP A VR+ HP + + D+ +L L
Sbjct: 43 NNYQVLLGRNNL-FKDEP-FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHL 100
Query: 59 DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
P + I LP K E +G A+GWG+ + LQ V++ ++ N +C
Sbjct: 101 SEPADITGGVKVIDLPTK-EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI 159
Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ 177
+K N + D M+CAG G KD+C GDSGGPL+ + L GI S G + CA+
Sbjct: 160 ETYKDN-----VTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGGATPCAK 210
Query: 178 QGQPGIYHRVAYTVDWISYIMN 199
P IY ++ WI +M
Sbjct: 211 PKTPAIYAKLIKFTSWIKKVMK 232
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 173 bits (440), Expect = 8e-55
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
R++ V LG + + E V K +H + + +D+ +L+L++ V+ P
Sbjct: 49 REITVILGAHDV-RKRES-TQQKIKVEKQIIHE--SYNSVPNLHDIMLLKLEKKVELTPA 104
Query: 68 IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER-WHKSNG 125
+ + LP + G WAAGWG TL+ V++ I+D + C +
Sbjct: 105 VNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPT-SYTLREVELRIMDEKACVDYRYY--- 160
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
Y +C G + + GDSGGPL+ GIVS G+ A+ P I+
Sbjct: 161 ----EYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVSYGHPDAK--PPAIFT 210
Query: 186 RVAYTVDWISYIMN 199
RV+ V WI+ ++N
Sbjct: 211 RVSTYVPWINAVIN 224
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 171 bits (437), Expect = 2e-54
Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 24/196 (12%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ V LG Y + E + + PQ + D+ +L+LDR
Sbjct: 47 NPGVSTVVLGAYDL-RRRER-QSRQTFSISSMSEN--GYDPQQNLNDLMLLQLDREANLT 102
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
+ + LP + G AGWG+ ++G RL + + V+V + QC
Sbjct: 103 SSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRL-SRFPRFVNVTVTPEDQCR------ 155
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
+C G C GD G PL+ E G+ S +G P +
Sbjct: 156 -------PNNVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFSLGPCGRG-PDFF 203
Query: 185 HRVAYTVDWISYIMNT 200
RVA DWI ++N
Sbjct: 204 TRVALFRDWIDGVLNN 219
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 171 bits (436), Expect = 3e-54
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
+QV LG + + E V + +HP + + D+ +LRL RP +
Sbjct: 45 PNLQVFLGKHNLRQ-RES-SQEQSSVVRAVIHP--DYDAASHDQDIMLLRLARPAKLSEL 100
Query: 68 IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
I P+ L GWG G P T+Q + ++ +CE +
Sbjct: 101 IQPLPLERD-CSANTTSCHILGWGKTADGDF--PDTIQCAYIHLVSREECEHAYPGQ--- 154
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHR 186
I M+CAG KDSCQGDSGGPL+ L G+VS G C + +PG+Y
Sbjct: 155 --ITQNMLCAGDEKYGKDSCQGDSGGPLVCG----DHLRGLVSWGNIPCGSKEKPGVYTN 208
Query: 187 VAYTVDWISYIM 198
V +WI +
Sbjct: 209 VCRYTNWIQKTI 220
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 170 bits (433), Expect = 9e-54
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
R + VTLG + I A E V K HP + P D+ +L+L R +
Sbjct: 49 RSMTVTLGAHNI-KAKEE-TQQIIPVAKAIPHP--DYNPDDRSNDIMLLKLVRNAKRTRA 104
Query: 68 IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
+ P+ LP + G + AGWG + PKTL V + + ++ CE +S+
Sbjct: 105 VRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEF-PKTLHEVKLTVQKDQVCESQFQSS-- 161
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
+C G S + DSGGPL+ + GIVS G + P ++ R
Sbjct: 162 --YNRANEICVGDSKIKGASFEEDSGGPLVCK----RAAAGIVSYGQTDGS--APQVFTR 213
Query: 187 VAYTVDWISYIMN 199
V V WI M
Sbjct: 214 VLSFVSWIKKTMK 226
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 170 bits (433), Expect = 1e-53
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF---------KFTPQADRYDVAVLRL 58
Q+ LG + + E A V + HP F + + +D+ +LRL
Sbjct: 45 DNYQLWLGRHNL-FDDEN-TAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRL 102
Query: 59 DRPVQYM-PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
P + + + LP + E +G A+GWG+++ + P LQ VD+ I+ N +C
Sbjct: 103 TEPADTITDAVKVVELPTE-EPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDEC 161
Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CA 176
++ H + D M+C G+ G KD+C GDSGGPLM + L G+ S GY C
Sbjct: 162 KKAHVQK-----VTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSWGYVPCG 212
Query: 177 QQGQPGIYHRVAYTVDWISYIM--NT 200
+P + RV V WI + N+
Sbjct: 213 TPNKPSVAVRVLSYVKWIEDTIAENS 238
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 168 bits (429), Expect = 4e-53
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 18/193 (9%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
R + VTLG + I + E V K HP K+ +D+ +L+L
Sbjct: 49 RSITVTLGAHNI-TEEED-TWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLTLA 104
Query: 68 IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
+ + P + G+ AGWG TLQ V + ++D + C +
Sbjct: 105 VGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTLQEVKLRLMDPQACSHFRD---- 159
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
++ +C G K + +GDSGGPL+ GIVS G S A+ P ++ R
Sbjct: 160 --FDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYGRSDAK--PPAVFTR 211
Query: 187 VAYTVDWISYIMN 199
+++ WI+ I+
Sbjct: 212 ISHYRPWINQILQ 224
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 168 bits (428), Expect = 8e-53
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 22/201 (10%)
Query: 8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD---------RYDVAVLRL 58
Q+ LG + + S E A V + P F + +D+ +LRL
Sbjct: 45 DDYQIWLGRHNL-SKDED-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRL 102
Query: 59 DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
+P + + + LP + G + +GWG + + TLQ V++ + N +C
Sbjct: 103 AQPARITDAVKILDLPTQEPKL-GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCA 161
Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ 177
R + + + ++CA +R + C GDSGG L+ + GI S GYS CA
Sbjct: 162 RAYPEK-----MTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGYSECAD 212
Query: 178 QGQPGIYHRVAYTVDWISYIM 198
++ +V WI +
Sbjct: 213 FNDNFVFTKVMPHKKWIKETI 233
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 166 bits (424), Expect = 2e-52
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 4 TASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
A V V LG V +I H F P DVA++++ V+
Sbjct: 47 VHDAVSVVVYLGSAVQYE-----GEAVVNSERIISHS--MFNPDTYLNDVALIKI-PHVE 98
Query: 64 YMPHIAPICLPEKGE---DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
Y +I PI LP E F + +GWG + LQ +IDN +C +
Sbjct: 99 YTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTV----ILQYTYNLVIDNDRCAQE 154
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQ 178
+ +I + +C G K C GDSGGP ++ + LIG+VS +G C +
Sbjct: 155 YPPG----IIVESTICGDTSDG-KSPCFGDSGGPFVLS--DKNLLIGVVSFVSGAGC-ES 206
Query: 179 GQPGIYHRVAYTVDWI 194
G+P + RV +DWI
Sbjct: 207 GKPVGFSRVTSYMDWI 222
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 166 bits (422), Expect = 3e-52
Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
+ R V+V LG + + S EP F V++I + P D+ +L+L+
Sbjct: 47 NVRAVRVVLGAHNL-SRREP-TRQVFAVQRI-FEN--GYDPVNLLNDIVILQLNGSATIN 101
Query: 66 PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
++ LP +G G A GWG L + LQ ++V ++ + C R
Sbjct: 102 ANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGI-ASVLQELNVTVVTS-LCRR----- 154
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGI 183
+C RG C GDSG PL+ + GI S CA P
Sbjct: 155 --------SNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDA 202
Query: 184 YHRVAYTVDWISYIM 198
+ VA V+WI I+
Sbjct: 203 FAPVAQFVNWIDSII 217
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 173 bits (440), Expect = 4e-52
Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 51/240 (21%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQADRYDVAV 55
+ +V +GD E F + K + P F + + D+A+
Sbjct: 268 DGNDHSLWRVNVGDPKSQWGKE------FLIEKAVISPGFDVFAKKNQGILEFYGDDIAL 321
Query: 56 LRLDRPVQYMPHIAPICLPEKGEDFL------GQFGWAAGWGALQAGSRL-RPKTLQAVD 108
L+L + V+ H PICLP E L G L S L
Sbjct: 322 LKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSK 381
Query: 109 VPI-----IDNRQCERWHKSN--------GINVVIYDEMMCAGYRGGAKDSCQGDSGGPL 155
+ I ++ C + V+ D+ +C+G + + C+G+SGG +
Sbjct: 382 LNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGESGGAV 440
Query: 156 MMERTGRWFLIGIVSAGYS-----CAQQGQ------------PGIYHRVAYTVDWISYIM 198
+ER R+F +G+VS G A + + + W+ +
Sbjct: 441 FLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHL 500
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 161 bits (410), Expect = 3e-51
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 51 YDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG--SRLRPKTLQAVD 108
+D+ +LRL P + + + LP + + G A+GWG+++ G P +Q V
Sbjct: 8 HDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPDEIQCVQ 66
Query: 109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI 168
+ ++ N C H + + M+CAGY G KD+C GDSGGPL+ G W GI
Sbjct: 67 LTLLQNTFCADAHPDK-----VTESMLCAGYLPGGKDTCMGDSGGPLICN--GMW--QGI 117
Query: 169 VSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN 199
S G+ C +P IY ++ + +DWI +
Sbjct: 118 TSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 162 bits (412), Expect = 1e-50
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 26/198 (13%)
Query: 3 NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
R V V LG + + EP F V ++ ++ Y D+ +++L P
Sbjct: 47 RDIPQRLVNVVLGAHNV-RTQEP-TQQHFSVAQVFLNNYDAEN---KLNDILLIQLSSPA 101
Query: 63 QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
+A + LP++ + G A GWG + A + LQ ++V ++
Sbjct: 102 NLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPP-AQVLQELNVTVVTF------- 153
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQ 180
+C C GDSGGPL+ + + GI S + CA +
Sbjct: 154 -------FCRPHNICTFVPRRKAGICFGDSGGPLICD----GIIQGIDSFVIWGCATRLF 202
Query: 181 PGIYHRVAYTVDWISYIM 198
P + RVA VDWI +
Sbjct: 203 PDFFTRVALYVDWIRSTL 220
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 172 bits (436), Expect = 3e-50
Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 51/240 (21%)
Query: 1 MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQADRYDV 53
T ++V++G + + HP + P+ YDV
Sbjct: 503 FTVDDKEHSIKVSVGGEKR----------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDV 552
Query: 54 AVLRLDRPVQYMPHIAPICLPEKGEDFL------GQFGWAAGWGALQAG------SRLRP 101
A+++L ++Y I PICLP L A
Sbjct: 553 ALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEE 612
Query: 102 KTLQAVDVPIIDNRQ---CERWHK-------SNGINVVIYDEMMCAGYRGGA--KDSCQG 149
K L +V I + + CER + I+ V+ +C G ++C+G
Sbjct: 613 KKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG 672
Query: 150 DSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQ--------PGIYHRVAYTVDWISYIMN 199
DSGGPL++ + R+ +G++S G C Q + + + + W+ +
Sbjct: 673 DSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ 732
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 135 bits (343), Expect = 8e-42
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
P LQ +P++ N C+++ + I D M+CAG SC GDSGGPL+ ++
Sbjct: 4 PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGA--SGVSSCMGDSGGPLVCKKN 56
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
G W L+GIVS G S PG+Y RV V+W+ +
Sbjct: 57 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 71.1 bits (175), Expect = 3e-16
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 11 QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
V G++ S+ E + K+ + K+ D+ +L+L + ++
Sbjct: 50 VVVAGEFDQGSSSEK--IQKLKIAKVFKNS--KYNSLTINNDITLLKLSTAASFSQTVSA 105
Query: 71 ICLPEKGEDFL-GQFGWAAGWGALQ 94
+CLP +DF G GWG +
Sbjct: 106 VCLPSASDDFAAGTTCVTTGWGLTR 130
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 55.4 bits (133), Expect = 7e-10
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 33/174 (18%)
Query: 27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW 86
+ + + V + A +YD AV++ D + + + + + G
Sbjct: 73 VNGSANMTEFYVPSGY-INTGASQYDFAVIKTDTNIGN--TVGYRSIRQ-VTNLTGTTIK 128
Query: 87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDS 146
+G+ + + + N+ Y D+
Sbjct: 129 ISGYPGDKMR-----------STGKVSQWEMSGSVTREDTNLAYYT-----------IDT 166
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV-AYTVDWISYIMN 199
G+SG ++ ++G+ +AGYS G + A V++I+Y
Sbjct: 167 FSGNSGSAML---DQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFINYAKA 214
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 42.8 bits (100), Expect = 2e-05
Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 22/150 (14%)
Query: 27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW 86
+ ++ + +D A L+
Sbjct: 67 EHGVWAAEELVTSAEWA-NRGDFEHDYAFAVLETKGG------------------TTVQQ 107
Query: 87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDS 146
G + A ++ R + A P + H +G ++ M + +G +
Sbjct: 108 QVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGT---ATNDPMGSSTQGIPCNM 164
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
G SGGP + S GY+
Sbjct: 165 TGGSSGGPWFLGNGTGGAQNSTNSYGYTFL 194
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 34.6 bits (78), Expect = 0.013
Identities = 18/144 (12%), Positives = 30/144 (20%), Gaps = 22/144 (15%)
Query: 51 YDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVP 110
D +L L+ F + Q V
Sbjct: 112 SDFTLLELNNAA-----------NPAFNLFWAGWD-----RRDQNYPGAIAIHHPNVAEK 155
Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS 170
I N + G + ++ + S G + R +G +
Sbjct: 156 RISNSTSPTSFVAWGGGAG--TTHLNVQWQPS-GGVTEPGSSGSPIYSPEKRV--LGQLH 210
Query: 171 AGYS-CAQQGQPGIYHRVAYTVDW 193
G S C+ G W
Sbjct: 211 GGPSSCSATGTNRSDQYGRVFTSW 234
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 31.4 bits (71), Expect = 0.14
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
G+SG P++ L+GI A +
Sbjct: 154 SGNSGSPVLNS---NNELVGIHFASDVKNDDNRNAYG 187
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 30.2 bits (68), Expect = 0.28
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
+ GDSGGPL IG+ S G G + V
Sbjct: 136 AEPGDSGGPLYSGTR----AIGLTSGGSGNCSSGGTTFFQPVT 174
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 30.2 bits (68), Expect = 0.31
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
V Y E G + GDSGG L+ G+ S G + G + V
Sbjct: 115 VTYPEGTVRGLIRTTVCAEPGDSGGSLLAGNQ----AQGVTSGGSGNCRTGGTTFFQPVN 170
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 30.6 bits (69), Expect = 0.37
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 70 PICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
L + D + + A + G+ KT A +PI + ++ + V
Sbjct: 53 KPILSSEDHDVIAR--------A-KTGT---GKTF-AFLIPIFQHLINTKFDSQYMVKAV 99
Query: 130 I 130
I
Sbjct: 100 I 100
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 30.5 bits (69), Expect = 0.42
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 70 PICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
L + D + + A + G+ KT A +PI + ++ + V
Sbjct: 104 KPILSSEDHDVIAR--------A-KTGT---GKTF-AFLIPIFQHLINTKFDSQYMVKAV 150
Query: 130 I 130
I
Sbjct: 151 I 151
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 29.5 bits (66), Expect = 0.60
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
V Y + S GDSGG +GI S C+ I+ V
Sbjct: 121 VNYGDGPVYNMVRTTACSAGGDSGGAHFAGSV----ALGIHSGSSGCSGTAGSAIHQPVT 176
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 29.1 bits (65), Expect = 0.65
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
+ GDSGGP + G+ S G + G + +
Sbjct: 135 AEGGDSGGPWLTGSQ----AQGVTSGGTGDCRSGGITFFQPIN 173
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 29.1 bits (65), Expect = 0.69
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
+ GDSGG L T +G+ S G + G Y V
Sbjct: 132 AQPGDSGGSLFAGST----ALGLTSGGSGNCRTGGTTFYQPVT 170
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 28.9 bits (65), Expect = 0.90
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
G+SG P++ + LIGI+ AG + +
Sbjct: 151 PGNSGSPVLNSK-HE--LIGILYAGSG-KDESEKNFG 183
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 28.0 bits (62), Expect = 1.7
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
+ GDSGG + G+ S G + G Y V
Sbjct: 138 AEPGDSGGSFISGTQ----AQGVTSGGSGNCRTGGTTFYQEVN 176
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 27.7 bits (61), Expect = 2.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAG 172
+ G +GG ++ + F++G SAG
Sbjct: 159 TRAGYAGGAVLAKDGADTFIVGTHSAG 185
>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus,
calicivirus, viral protein; 1.50A {Norwalk virus} PDB:
2fyr_A 2iph_A* 1wqs_A*
Length = 194
Score = 27.4 bits (60), Expect = 2.9
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 149 GDSGGPLMMERTGRWFLIGIVSAG------YSCAQQGQPG 182
GD G P + +R W + G+ +A CA Q G
Sbjct: 150 GDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAVQAGEG 189
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 26.8 bits (59), Expect = 4.7
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
G+SG + L+GI S+ S + I
Sbjct: 192 PGNSGSGIF---NSNGELVGIHSSKVS-HLDREHQI 223
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 26.6 bits (59), Expect = 4.9
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 18/62 (29%)
Query: 87 AAGWGALQAGSRLRPKT-------LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY 139
AAG G+RLRP T +Q P+I+ Q E + K GIN +I + GY
Sbjct: 32 AAG-----LGTRLRPLTENTPKALVQVNQKPLIE-YQIE-FLKEKGINDII----IIVGY 80
Query: 140 RG 141
Sbjct: 81 LK 82
>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine
norovirus 1}
Length = 185
Score = 26.3 bits (57), Expect = 6.4
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYS------CAQQGQPGI 183
GD+G P + ++ W +IG+ A A G+P +
Sbjct: 139 GDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPTL 179
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 26.1 bits (57), Expect = 7.7
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
GDSGG + G++S G + GI
Sbjct: 141 GDSGGSWITSAGQ---AQGVMSGGNVQSNGNNCGI 172
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 26.1 bits (58), Expect = 7.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
G+SGG L + + L+G+ SA +
Sbjct: 167 GNSGGAL-VNMNAQ--LVGVNSAIATLGADSADA 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,307,207
Number of extensions: 197117
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 121
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)