BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12784
         (70 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
          Dissociation Inhibitor (Gdi) In Complex With A
          Geranylgeranyl (Gg) Peptide
          Length = 449

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 3  GAGLVTQCLMGFSLIKNTKKLISLDRSP 30
          G GL T+C++   +  N KK++ +DR+P
Sbjct: 13 GTGL-TECILSGIMSVNGKKVLHMDRNP 39


>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
          Length = 433

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 3  GAGLVTQCLMGFSLIKNTKKLISLDRSP 30
          G GL T+C++   +  N KK++ +DR+P
Sbjct: 13 GTGL-TECILSGIMSVNGKKVLHMDRNP 39


>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
          Length = 447

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 3  GAGLVTQCLMGFSLIKNTKKLISLDRSP 30
          G GL T+C++   +  N KK++ +DR+P
Sbjct: 11 GTGL-TECILSGIMSVNGKKVLHMDRNP 37


>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
 pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
          Length = 265

 Score = 25.0 bits (53), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 15  SLIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYI 62
           + +K  K L+SL  SPDD+  +  I  L+    L   K +  + N  +
Sbjct: 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,739,777
Number of Sequences: 62578
Number of extensions: 45790
Number of successful extensions: 123
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)