Query psy12784
Match_columns 70
No_of_seqs 101 out of 422
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 19:34:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3700|consensus 99.4 1.3E-14 2.8E-19 109.9 -2.7 65 4-68 239-304 (705)
2 PF01757 Acyl_transf_3: Acyltr 95.6 0.019 4.1E-07 37.2 3.5 29 34-62 2-30 (340)
3 PRK03854 opgC glucans biosynth 74.3 4.5 9.6E-05 28.4 3.3 26 30-55 6-31 (375)
4 COG1835 Predicted acyltransfer 73.1 4.5 9.8E-05 28.5 3.1 28 30-57 12-39 (386)
5 COG3274 Predicted O-acyltransf 46.8 31 0.00068 25.0 3.4 24 32-55 4-27 (332)
6 PF07786 DUF1624: Protein of u 22.2 94 0.002 20.1 2.4 23 33-55 2-24 (223)
7 PF15061 DUF4538: Domain of un 22.2 1.1E+02 0.0024 16.7 2.2 27 42-68 11-37 (58)
8 PF10129 OpgC_C: OpgC protein; 20.1 94 0.002 22.3 2.2 18 36-53 5-22 (358)
9 PF12422 Condensin2nSMC: Conde 19.8 80 0.0017 19.8 1.6 19 29-47 7-25 (152)
10 TIGR02549 CRISPR_DxTHG CRISPR- 18.5 32 0.0007 15.8 -0.3 17 33-49 4-20 (26)
No 1
>KOG3700|consensus
Probab=99.39 E-value=1.3e-14 Score=109.85 Aligned_cols=65 Identities=32% Similarity=0.528 Sum_probs=58.8
Q ss_pred CcchhhhhhheehhhhHHHhhccCC-CCCCcchhHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Q psy12784 4 AGLVTQCLMGFSLIKNTKKLISLDR-SPDDIECVHGIRTLNAFMLLLSHKSMALFFNPYINRTQMA 68 (70)
Q Consensus 4 ~~~~~~~l~~FS~~~N~~~L~~~~~-~~~~l~~l~GiR~lsm~wIi~gH~~~~~~~~p~~N~~~~e 68 (70)
++...+++.|||+++|+++|++.++ +++.++|+||||++||+|||.||++++....|.+|+..+.
T Consensus 239 ~~~~~~il~~FS~~~N~~~lfs~~~~~~~~I~~L~giR~lS~~WVi~gH~~~~~~~~~~~n~~~~~ 304 (705)
T KOG3700|consen 239 QNRLARILLAFSLWTNAKLLFSVKESKPGFIDCLDGIRFLSMFWVVFGHTFNFLQFSPVDNLASLL 304 (705)
T ss_pred hhhhhhhheeeeHhhhHHHHcccccCCCCcceeecchheeeeeEEEeccEEEEEeccccccHHHHH
Confidence 4678899999999999999999875 4578999999999999999999999999988889988764
No 2
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=95.55 E-value=0.019 Score=37.18 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy12784 34 ECVHGIRTLNAFMLLLSHKSMALFFNPYI 62 (70)
Q Consensus 34 ~~l~GiR~lsm~wIi~gH~~~~~~~~p~~ 62 (70)
..+|++|.+++++|+.+|........+..
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~ 30 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQ 30 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 57999999999999999999865444333
No 3
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=74.32 E-value=4.5 Score=28.45 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhh
Q psy12784 30 PDDIECVHGIRTLNAFMLLLSHKSMA 55 (70)
Q Consensus 30 ~~~l~~l~GiR~lsm~wIi~gH~~~~ 55 (70)
++....+|-+|+++++.|+.+|+..+
T Consensus 6 ~~R~~~lD~lR~~a~l~VV~~H~~~~ 31 (375)
T PRK03854 6 AQREYFLDSIRAWLMLLGIPFHISLI 31 (375)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44577899999999999999999764
No 4
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=73.07 E-value=4.5 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhh
Q psy12784 30 PDDIECVHGIRTLNAFMLLLSHKSMALF 57 (70)
Q Consensus 30 ~~~l~~l~GiR~lsm~wIi~gH~~~~~~ 57 (70)
.+-+.-+||+|.+...+|+..|......
T Consensus 12 ~~~~~~ldgLR~iAal~Vv~~H~~~~~~ 39 (386)
T COG1835 12 GGRLPGLDGLRAIAALLVVLYHAGFQIG 39 (386)
T ss_pred ccccCCcHHHHHHHHHHHHHHHcccccc
Confidence 5678999999999999999999886433
No 5
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=46.75 E-value=31 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhh
Q psy12784 32 DIECVHGIRTLNAFMLLLSHKSMA 55 (70)
Q Consensus 32 ~l~~l~GiR~lsm~wIi~gH~~~~ 55 (70)
.+.-+|-.|+++++.||.-|+...
T Consensus 4 ri~wiD~~r~iA~f~VV~iH~~~~ 27 (332)
T COG3274 4 RIVWIDLLRSIACFMVVMIHSTLW 27 (332)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999998764
No 6
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=22.25 E-value=94 Score=20.07 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q psy12784 33 IECVHGIRTLNAFMLLLSHKSMA 55 (70)
Q Consensus 33 l~~l~GiR~lsm~wIi~gH~~~~ 55 (70)
+..+|-+|.++++..+..|....
T Consensus 2 i~~lD~~RGlaii~Mi~~H~~~~ 24 (223)
T PF07786_consen 2 IPSLDALRGLAIIGMILVHFLFD 24 (223)
T ss_pred cHHHHHHHHHHHHhhhHhhCcCh
Confidence 56789999999999999998753
No 7
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=22.17 E-value=1.1e+02 Score=16.72 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhhh
Q psy12784 42 LNAFMLLLSHKSMALFFNPYINRTQMA 68 (70)
Q Consensus 42 lsm~wIi~gH~~~~~~~~p~~N~~~~e 68 (70)
+.-+.-.+|-.+..+.+.|..|+++.-
T Consensus 11 ~ggfVg~iG~a~Ypi~~~Pmm~~eeYk 37 (58)
T PF15061_consen 11 VGGFVGLIGAALYPIYFRPMMNPEEYK 37 (58)
T ss_pred HHHHHHHHHHHHhhhhcccccChHHHH
Confidence 444555667777888999999998764
No 8
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.08 E-value=94 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy12784 36 VHGIRTLNAFMLLLSHKS 53 (70)
Q Consensus 36 l~GiR~lsm~wIi~gH~~ 53 (70)
+|.+|-+.+..|.+.|.-
T Consensus 5 iD~~RGlaL~~Ifi~Hip 22 (358)
T PF10129_consen 5 IDFFRGLALVMIFIDHIP 22 (358)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 899999999999999984
No 9
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=19.79 E-value=80 Score=19.83 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCCCcchhHHHHHHHHHHH
Q psy12784 29 SPDDIECVHGIRTLNAFML 47 (70)
Q Consensus 29 ~~~~l~~l~GiR~lsm~wI 47 (70)
++.-+++.+|-|++|+++-
T Consensus 7 ~p~~i~~~~g~~fls~l~~ 25 (152)
T PF12422_consen 7 PPSFIKTFEGRKFLSFLFS 25 (152)
T ss_pred chhhcCcHHHHHHHHHHHH
Confidence 4667889999999999955
No 10
>TIGR02549 CRISPR_DxTHG CRISPR-associated DxTHG motif protein. This model describes a short region highly conserved between two otherwise substantially different CRISPR-associated (cas) proteins, TIGR02221 and TIGR01987. This region includes the motif [VIL]-D-x-[ST]-H-[GS].
Probab=18.47 E-value=32 Score=15.81 Aligned_cols=17 Identities=12% Similarity=0.299 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHH
Q psy12784 33 IECVHGIRTLNAFMLLL 49 (70)
Q Consensus 33 l~~l~GiR~lsm~wIi~ 49 (70)
++.-||+|.++++-...
T Consensus 4 lDiTHGfr~~P~la~~a 20 (26)
T TIGR02549 4 LDVTHGFNFMPLLAYEA 20 (26)
T ss_pred EEecCcccchHHHHHHh
Confidence 34568999998876543
Done!