Query psy12784
Match_columns 70
No_of_seqs 101 out of 422
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_B SEC61gamma, protein tra 27.1 78 0.0027 16.9 3.3 49 16-64 14-64 (68)
2 3mp7_B Preprotein translocase 25.6 79 0.0027 16.4 3.4 37 16-52 11-47 (61)
3 2ww9_B Protein transport prote 19.7 1.1E+02 0.0039 16.8 3.0 48 16-63 28-77 (80)
4 1rh5_B Preprotein translocase 15.0 1.4E+02 0.0047 16.1 2.5 37 16-52 15-51 (74)
5 1emz_A Envelope glycoprotein E 11.0 52 0.0018 14.5 -0.1 14 11-24 10-23 (26)
6 3ouf_A Potassium channel prote 10.8 1.1E+02 0.0036 16.7 1.2 24 36-59 56-79 (97)
7 1yar_O Proteasome activator pr 8.4 1.6E+02 0.0056 19.0 1.6 12 18-29 220-231 (237)
8 2lat_A Dolichyl-diphosphooligo 7.4 2.5E+02 0.0086 13.1 2.6 19 36-54 11-29 (37)
9 1yod_A Water-solublized phosph 7.1 1.9E+02 0.0064 12.9 1.0 9 16-24 3-11 (30)
10 2ca5_A MXIH; transport protein 6.9 1.5E+02 0.0052 16.5 0.8 16 7-22 50-65 (85)
No 1
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=27.14 E-value=78 Score=16.86 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=33.5
Q ss_pred hhhhHHHhhccCCCCCCcchhHHHHHHHHHHHHHHHHHh--hhhhccccch
Q psy12784 16 LIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSM--ALFFNPYINR 64 (70)
Q Consensus 16 ~~~N~~~L~~~~~~~~~l~~l~GiR~lsm~wIi~gH~~~--~~~~~p~~N~ 64 (70)
+.++++++++..++++.=....-.++-.+..+++|=.-. .....|+.|-
T Consensus 14 f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI~ipinni 64 (68)
T 2wwb_B 14 FVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNI 64 (68)
T ss_dssp HHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHHHGGGTSC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888998876666666677777777777777775443 2456777764
No 2
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=25.57 E-value=79 Score=16.42 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=27.7
Q ss_pred hhhhHHHhhccCCCCCCcchhHHHHHHHHHHHHHHHH
Q psy12784 16 LIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHK 52 (70)
Q Consensus 16 ~~~N~~~L~~~~~~~~~l~~l~GiR~lsm~wIi~gH~ 52 (70)
+.++++++++..++|+.=....-.|+..+..+++|=.
T Consensus 11 f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 11 FWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp HHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889988776677677777778777777777643
No 3
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=19.66 E-value=1.1e+02 Score=16.76 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=32.6
Q ss_pred hhhhHHHhhccCCCCCCcchhHHHHHHHHHHHHHHHHHhh--hhhccccc
Q psy12784 16 LIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHKSMA--LFFNPYIN 63 (70)
Q Consensus 16 ~~~N~~~L~~~~~~~~~l~~l~GiR~lsm~wIi~gH~~~~--~~~~p~~N 63 (70)
+.+++.++++..++++.=.+..-.++-....+++|-.-.+ ....|+.|
T Consensus 28 f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~iPInn 77 (80)
T 2ww9_B 28 FVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRY 77 (80)
T ss_dssp HHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 5688899988766666667777777777777777754432 34455554
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=15.04 E-value=1.4e+02 Score=16.13 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=26.7
Q ss_pred hhhhHHHhhccCCCCCCcchhHHHHHHHHHHHHHHHH
Q psy12784 16 LIKNTKKLISLDRSPDDIECVHGIRTLNAFMLLLSHK 52 (70)
Q Consensus 16 ~~~N~~~L~~~~~~~~~l~~l~GiR~lsm~wIi~gH~ 52 (70)
+.++++++++..++++.=.+..-.++..+..+++|=.
T Consensus 15 f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~I 51 (74)
T 1rh5_B 15 FIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGII 51 (74)
T ss_dssp HHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889988766666666777777777777777643
No 5
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.96 E-value=52 Score=14.47 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=9.3
Q ss_pred hhheehhhhHHHhh
Q psy12784 11 LMGFSLIKNTKKLI 24 (70)
Q Consensus 11 l~~FS~~~N~~~L~ 24 (70)
+.=||...||.+.+
T Consensus 10 layfsm~gnWaKVl 23 (26)
T 1emz_A 10 IAYFSMVGNWAKXX 23 (26)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHhhHHhhhc
Confidence 34588999998764
No 6
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=10.80 E-value=1.1e+02 Score=16.68 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhc
Q psy12784 36 VHGIRTLNAFMLLLSHKSMALFFN 59 (70)
Q Consensus 36 l~GiR~lsm~wIi~gH~~~~~~~~ 59 (70)
=+.=|.++++|++.|=........
T Consensus 56 t~~gr~~~~~~~~~G~~~~~~~i~ 79 (97)
T 3ouf_A 56 TDFGKIFTILYIFIGIGLVFGFIH 79 (97)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999766544433
No 7
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Probab=8.45 E-value=1.6e+02 Score=19.02 Aligned_cols=12 Identities=42% Similarity=0.291 Sum_probs=9.5
Q ss_pred hhHHHhhccCCC
Q psy12784 18 KNTKKLISLDRS 29 (70)
Q Consensus 18 ~N~~~L~~~~~~ 29 (70)
-||++|+.++..
T Consensus 220 lNWKKLIqPRsg 231 (237)
T 1yar_O 220 LNWKKLIQPRTG 231 (237)
T ss_dssp HHHHHHHCSCCC
T ss_pred HhHHHhcCCcCC
Confidence 599999987643
No 8
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=7.43 E-value=2.5e+02 Score=13.14 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy12784 36 VHGIRTLNAFMLLLSHKSM 54 (70)
Q Consensus 36 l~GiR~lsm~wIi~gH~~~ 54 (70)
.+.+-+..|..|+..|-..
T Consensus 11 an~lG~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 11 ANMLGVSLFLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566678889999999665
No 9
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=7.12 E-value=1.9e+02 Score=12.92 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=6.3
Q ss_pred hhhhHHHhh
Q psy12784 16 LIKNTKKLI 24 (70)
Q Consensus 16 ~~~N~~~L~ 24 (70)
.++|.+.||
T Consensus 3 ArqNlQ~Lf 11 (30)
T 1yod_A 3 ARQNLQNLY 11 (30)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467777776
No 10
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=6.94 E-value=1.5e+02 Score=16.53 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=11.5
Q ss_pred hhhhhhheehhhhHHH
Q psy12784 7 VTQCLMGFSLIKNTKK 22 (70)
Q Consensus 7 ~~~~l~~FS~~~N~~~ 22 (70)
++..+..+|+.||.+.
T Consensus 50 yQ~kl~eysl~rNaqS 65 (85)
T 2ca5_A 50 YQSKLSEYTLYRNAQS 65 (85)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777888888765
Done!