Query psy12784
Match_columns 70
No_of_seqs 101 out of 422
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 19:34:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijdb_ f.3.1.1 (B:) Light-har 33.3 17 0.0013 16.4 2.3 20 35-55 16-35 (40)
2 d1nkzb_ f.3.1.1 (B:) Light-har 32.7 18 0.0013 16.5 2.3 24 35-60 15-38 (41)
3 d1wjpa3 g.37.1.1 (A:67-107) Zi 9.7 9.1 0.00066 17.2 -1.9 23 32-54 3-25 (41)
4 d1adta2 g.51.1.1 (A:266-385) F 8.7 39 0.0029 18.7 0.2 10 30-39 14-23 (120)
5 d2gkea1 d.21.1.1 (A:1-130) Dia 8.0 69 0.0051 17.2 1.1 16 30-45 68-83 (130)
6 d1yaro1 a.24.8.1 (O:4-231) Pro 7.9 77 0.0056 19.0 1.4 12 18-29 211-222 (228)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 6.9 1.3E+02 0.0092 15.0 1.9 18 37-54 65-82 (103)
8 d1kqfc_ f.21.1.1 (C:) Formate 6.8 1.9E+02 0.014 16.0 2.8 24 33-56 150-173 (216)
9 d1h32a2 a.3.1.8 (A:151-261) Di 6.6 1.6E+02 0.012 15.0 2.3 23 16-38 8-30 (111)
10 d2gysa3 b.1.2.1 (A:218-316) Co 6.4 1.4 0.0001 24.3 -6.7 17 30-46 4-21 (99)
No 1
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=33.28 E-value=17 Score=16.43 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy12784 35 CVHGIRTLNAFMLLLSHKSMA 55 (70)
Q Consensus 35 ~l~GiR~lsm~wIi~gH~~~~ 55 (70)
.+||.|++..+-++ .|...|
T Consensus 16 vIdGtRvF~~iA~~-AH~La~ 35 (40)
T d1ijdb_ 16 VIDGTRVFLVIAAI-AHFLAF 35 (40)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH
T ss_pred hhcchhHHHHHHHH-HHHHHH
Confidence 58999999887654 677665
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=32.67 E-value=18 Score=16.47 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy12784 35 CVHGIRTLNAFMLLLSHKSMALFFNP 60 (70)
Q Consensus 35 ~l~GiR~lsm~wIi~gH~~~~~~~~p 60 (70)
.+||.|++..+-++ .|...| ...|
T Consensus 15 vIdGtRvF~~iA~~-AH~La~-~~tP 38 (41)
T d1nkzb_ 15 VIDGTRVFLGLALV-AHFLAF-SATP 38 (41)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH-HHSS
T ss_pred hhcchHHHHHHHHH-HHHHHH-HhCc
Confidence 58999999887654 677765 3344
No 3
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.66 E-value=9.1 Score=17.22 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=15.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHh
Q psy12784 32 DIECVHGIRTLNAFMLLLSHKSM 54 (70)
Q Consensus 32 ~l~~l~GiR~lsm~wIi~gH~~~ 54 (70)
.+.|++++|.+--.+-|.-|..-
T Consensus 3 kltclecmrtfkssfsiwrhqve 25 (41)
T d1wjpa3 3 KLTCLECMRTFKSSFSIWRHQVE 25 (41)
T ss_dssp GGEEGGGTEECSSHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhe
Confidence 47888888866555556666553
No 4
>d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=8.66 E-value=39 Score=18.73 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=7.9
Q ss_pred CCCcchhHHH
Q psy12784 30 PDDIECVHGI 39 (70)
Q Consensus 30 ~~~l~~l~Gi 39 (70)
.++|+|+||.
T Consensus 14 e~~l~ClHG~ 23 (120)
T d1adta2 14 EGELKCLHGS 23 (120)
T ss_dssp TTCCBCTTSS
T ss_pred CCceeeecCC
Confidence 4579999985
No 5
>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=7.98 E-value=69 Score=17.23 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.0
Q ss_pred CCCcchhHHHHHHHHH
Q psy12784 30 PDDIECVHGIRTLNAF 45 (70)
Q Consensus 30 ~~~l~~l~GiR~lsm~ 45 (70)
+..=.|-||+|+++-+
T Consensus 68 S~Ae~CGNG~RCva~~ 83 (130)
T d2gkea1 68 SEVSQCGNGARCFARF 83 (130)
T ss_dssp CEESCCHHHHHHHHHH
T ss_pred cHhhhcccHHHHHHHH
Confidence 4456899999997743
No 6
>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26 {Trypanosoma brucei [TaxId: 5691]}
Probab=7.89 E-value=77 Score=18.96 Aligned_cols=12 Identities=42% Similarity=0.291 Sum_probs=9.5
Q ss_pred hhHHHhhccCCC
Q psy12784 18 KNTKKLISLDRS 29 (70)
Q Consensus 18 ~N~~~L~~~~~~ 29 (70)
-||++|+.++..
T Consensus 211 lNWKKLIqPRsg 222 (228)
T d1yaro1 211 LNWKKLIQPRTG 222 (228)
T ss_dssp HHHHHHHCSCCC
T ss_pred HhHHHHcCCCCC
Confidence 599999987643
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.94 E-value=1.3e+02 Score=15.04 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy12784 37 HGIRTLNAFMLLLSHKSM 54 (70)
Q Consensus 37 ~GiR~lsm~wIi~gH~~~ 54 (70)
..=|+++++|++.|=...
T Consensus 65 ~~gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 65 LWGRCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 444999999999986554
No 8
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=1.9e+02 Score=15.98 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q psy12784 33 IECVHGIRTLNAFMLLLSHKSMAL 56 (70)
Q Consensus 33 l~~l~GiR~lsm~wIi~gH~~~~~ 56 (70)
...+|++=+..+...+++|.+...
T Consensus 150 ~~~iH~~~~~l~~~~vi~Hvy~a~ 173 (216)
T d1kqfc_ 150 SLLIHAAAGIILIHAILIHMYMAF 173 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999998764
No 9
>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}
Probab=6.61 E-value=1.6e+02 Score=15.05 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=16.4
Q ss_pred hhhhHHHhhccCCCCCCcchhHH
Q psy12784 16 LIKNTKKLISLDRSPDDIECVHG 38 (70)
Q Consensus 16 ~~~N~~~L~~~~~~~~~l~~l~G 38 (70)
+....++||..+..+.+++|-+|
T Consensus 8 ~~e~Ge~lf~~r~G~~~~sCasC 30 (111)
T d1h32a2 8 TWEKGREIYYTRYGQLDLSCASC 30 (111)
T ss_dssp HHHHHHHHHTCCBTTTTBCHHHH
T ss_pred HHHHHHHHHhcccCCCCCChhhc
Confidence 45667888876666777888654
No 10
>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.35 E-value=1.4 Score=24.28 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=9.1
Q ss_pred CCCcch-hHHHHHHHHHH
Q psy12784 30 PDDIEC-VHGIRTLNAFM 46 (70)
Q Consensus 30 ~~~l~~-l~GiR~lsm~w 46 (70)
+++|.| +||+..|++.|
T Consensus 4 PrNLqC~FdG~~~LsCSW 21 (99)
T d2gysa3 4 PQNLECFFDGAAVLSCSW 21 (99)
T ss_dssp CEEEEEEECSSSEEEEEE
T ss_pred ccceEEEeCCcceEEEEE
Confidence 445555 45655555544
Done!