RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12784
         (70 letters)



>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family.  This
           group has the characteristic catalytic and structural
           zinc-binding sites of the zinc-dependent alcohol
           dehydrogenases of the MDR family. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.
          Length = 350

 Score = 29.7 bits (67), Expect = 0.078
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 1   MAGAGLVTQCLMGFSLIKNTKKLISLDRSPDDIE 34
           +AGAG +   ++G + +KN KKLI LD   + + 
Sbjct: 180 LAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLA 213


>gnl|CDD|223054 PHA03359, PHA03359, UL17 tegument protein; Provisional.
          Length = 686

 Score = 26.1 bits (58), Expect = 1.5
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 23  LISLDRSPDDIECVHGI--RT---LNAFMLLLSHKSMALFFN 59
           LI  D  P   + +  I  R    L A +  + ++S   F N
Sbjct: 498 LIEYDIPPRQRDWITEIARRAPDLLEALLRAIQNESAEEFSN 539


>gnl|CDD|213067 cd11751, GH94N_like_4, Glycoside hydrolase family 94
          N-terminal-like domain of uncharacterized function.
          The glycoside hydrolase family 94 (previously known as
          glycosyltransferase family 36) includes cellobiose
          phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase
          (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-),
          amongst other members. Their N-terminal domain is
          involved in oligomerization and may play a role in
          catalysis, but it is separate from the catalytic domain
          [an (alpha/alpha)(6) barrel]. The GH64N domain, as
          represented by this model, is found near the N-terminus
          of GH94 members and related proteins with
          uncharacterized specificities.
          Length = 223

 Score = 25.8 bits (57), Expect = 1.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 26 LDRSPDDIECVHGI 39
          L   P+D ECVHGI
Sbjct: 30 LKTEPEDYECVHGI 43


>gnl|CDD|177566 PHA03242, PHA03242, envelope glycoprotein M; Provisional.
          Length = 428

 Score = 24.8 bits (54), Expect = 4.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 41  TLNAFMLLLSHKSMALFFNPYI 62
            L A +LLL+HK   L    Y+
Sbjct: 152 LLQATVLLLAHKQSGLAATVYV 173


>gnl|CDD|224925 COG2014, COG2014, Uncharacterized conserved protein [Function
          unknown].
          Length = 250

 Score = 24.4 bits (53), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 18 KNTKKLISLDRSPDDIECVHGIRTLNA 44
          K+ ++ I L  S D IE   G+  +NA
Sbjct: 64 KSLEEFIELADSLDPIERTLGVAAINA 90


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,423,316
Number of extensions: 246420
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 6
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)