RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12784
         (70 letters)



>3npg_A Uncharacterized DUF364 family protein; protein with unknown
          function from DUF364 family, structural genomics; 2.70A
          {Pyrococcus horikoshii}
          Length = 249

 Score = 24.6 bits (53), Expect = 3.4
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 18 KNTKKLISLDRSPDDIECVHGIRTLNAFM 46
           +  + I    S + IE   G+  +NA  
Sbjct: 65 PSLLEFIDKADSLNIIERTLGVAAINAVS 93


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 977,265
Number of extensions: 42885
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)