RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12784
         (70 letters)



>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
           alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 490

 Score = 23.6 bits (50), Expect = 2.8
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 3   GAGLVTQCLMGFSLIKNTKKLISLDRSP--DDIECVHGIRTLNAFMLLLSHKSMALFFNP 60
              ++T    G S +++    + + R    DD   V          L +  + + L    
Sbjct: 282 QLTVLTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEPLNKEGSGLWVRGRHLVLLDKK 341


>d2akka1 b.34.11.2 (A:1-72) Hypothetical protein RPA4501
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 72

 Score = 21.9 bits (47), Expect = 6.5
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 13 GFSLIKNTK-KLISLDRSPDDIEC-VHGIRTL 42
             L + T  + I L  S D+IE     I+ L
Sbjct: 31 STVLKRGTMIRGIRLTDSEDEIEGRTDKIKGL 62


>d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId:
          10665]}
          Length = 123

 Score = 22.1 bits (47), Expect = 8.6
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 18 KNTKKLISLDRSPDDIE 34
          K    LI  D  PD+I 
Sbjct: 70 KENLVLIDFDYIPDNIA 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,877
Number of extensions: 7904
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 3
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)