Query psy12785
Match_columns 194
No_of_seqs 172 out of 1993
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00190 Tryp_SPc Trypsin-like 99.9 1.8E-25 3.9E-30 175.7 13.7 113 60-176 1-115 (232)
2 smart00020 Tryp_SPc Trypsin-li 99.9 2.2E-24 4.8E-29 169.9 13.1 113 59-176 1-115 (229)
3 PF00089 Trypsin: Trypsin; In 99.9 1.9E-22 4E-27 157.5 12.7 111 60-176 1-113 (220)
4 KOG3627|consensus 99.9 2.8E-22 6.1E-27 161.3 12.5 117 57-176 10-132 (256)
5 COG5640 Secreted trypsin-like 99.6 5.9E-16 1.3E-20 126.9 6.0 104 54-162 27-136 (413)
6 PF09342 DUF1986: Domain of un 99.4 1E-12 2.2E-17 103.1 10.1 97 69-174 14-113 (267)
7 PF03761 DUF316: Domain of unk 99.1 1.2E-09 2.6E-14 89.4 10.4 130 44-178 28-187 (282)
8 PF13365 Trypsin_2: Trypsin-li 97.6 0.00026 5.6E-09 49.6 6.6 21 84-104 1-22 (120)
9 COG3591 V8-like Glu-specific e 97.4 0.00039 8.5E-09 55.9 6.3 41 65-105 43-87 (251)
10 TIGR02037 degP_htrA_DO peripla 95.5 0.094 2E-06 45.6 8.7 58 81-160 57-115 (428)
11 PRK10898 serine endoprotease; 93.3 0.75 1.6E-05 39.1 9.1 57 82-160 78-135 (353)
12 PRK10942 serine endoprotease; 92.9 0.51 1.1E-05 41.7 7.7 56 82-159 111-168 (473)
13 TIGR02038 protease_degS peripl 92.8 0.6 1.3E-05 39.6 7.8 56 83-160 79-135 (351)
14 PRK10139 serine endoprotease; 92.2 0.71 1.5E-05 40.6 7.7 57 82-160 90-148 (455)
15 PF10459 Peptidase_S46: Peptid 29.7 34 0.00073 32.0 1.8 21 83-103 48-69 (698)
16 smart00680 CLIP Clip or disulp 27.9 29 0.00063 20.1 0.7 16 5-20 35-52 (52)
17 PF00863 Peptidase_C4: Peptida 21.0 1.5E+02 0.0032 23.9 3.7 56 88-162 37-94 (235)
18 cd07268 Glo_EDI_BRP_like_4 Thi 20.9 1.6E+02 0.0035 21.9 3.6 27 149-175 36-63 (149)
No 1
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=99.93 E-value=1.8e-25 Score=175.71 Aligned_cols=113 Identities=40% Similarity=0.698 Sum_probs=97.3
Q ss_pred eeCCeecCCCCCceEEEEeec--ceeeeeEEeeCCEEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEE
Q psy12785 60 IVGGDEAGFGSFPWQAYIRIG--SSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINV 137 (194)
Q Consensus 60 i~gG~~~~~~~~Pw~v~l~~~--~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~ 137 (194)
|+||..+..++|||+|.++.. .+.|+|+||+++||||||||+.......+.|++|........ ...+.+.|.++++
T Consensus 1 i~~G~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~--~~~~~~~v~~~~~ 78 (232)
T cd00190 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNE--GGGQVIKVKKVIV 78 (232)
T ss_pred CcCCeECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCC--CceEEEEEEEEEE
Confidence 579999999999999999764 789999999999999999999876567789999987765432 1356788999999
Q ss_pred CCCCCCCCCCCcccEEEEEEcCccccCCCceeeecCCCC
Q psy12785 138 HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176 (194)
Q Consensus 138 hp~y~~~~~~~~nDIALl~L~~~~~~~~~v~PiCLp~~~ 176 (194)
||.|+. ....+|||||+|++++.++.+++|||||..+
T Consensus 79 hp~y~~--~~~~~DiAll~L~~~~~~~~~v~picl~~~~ 115 (232)
T cd00190 79 HPNYNP--STYDNDIALLKLKRPVTLSDNVRPICLPSSG 115 (232)
T ss_pred CCCCCC--CCCcCCEEEEEECCcccCCCcccceECCCcc
Confidence 999863 3457999999999999999999999999874
No 2
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=99.92 E-value=2.2e-24 Score=169.86 Aligned_cols=113 Identities=39% Similarity=0.718 Sum_probs=97.0
Q ss_pred eeeCCeecCCCCCceEEEEeec--ceeeeeEEeeCCEEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEE
Q psy12785 59 RIVGGDEAGFGSFPWQAYIRIG--SSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKIN 136 (194)
Q Consensus 59 ri~gG~~~~~~~~Pw~v~l~~~--~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~ 136 (194)
||+||..+..++|||++.++.. .+.|+|+||++++|||||||+.......+.|++|.+......+ ...+.|..++
T Consensus 1 ~~~~G~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~~~~~~~~---~~~~~v~~~~ 77 (229)
T smart00020 1 RIVGGSEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSHDLSSGEE---GQVIKVSKVI 77 (229)
T ss_pred CccCCCcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcccCCCCCC---ceEEeeEEEE
Confidence 5899999999999999999875 5789999999999999999998765567999999877644321 2678899999
Q ss_pred ECCCCCCCCCCCcccEEEEEEcCccccCCCceeeecCCCC
Q psy12785 137 VHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176 (194)
Q Consensus 137 ~hp~y~~~~~~~~nDIALl~L~~~~~~~~~v~PiCLp~~~ 176 (194)
.||.|+. ....+|||||+|++|+.++++++|||||..+
T Consensus 78 ~~p~~~~--~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~ 115 (229)
T smart00020 78 IHPNYNP--STYDNDIALLKLKSPVTLSDNVRPICLPSSN 115 (229)
T ss_pred ECCCCCC--CCCcCCEEEEEECcccCCCCceeeccCCCcc
Confidence 9999863 4457899999999999999999999999763
No 3
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=99.89 E-value=1.9e-22 Score=157.48 Aligned_cols=111 Identities=42% Similarity=0.761 Sum_probs=93.6
Q ss_pred eeCCeecCCCCCceEEEEeec--ceeeeeEEeeCCEEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEE
Q psy12785 60 IVGGDEAGFGSFPWQAYIRIG--SSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINV 137 (194)
Q Consensus 60 i~gG~~~~~~~~Pw~v~l~~~--~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~ 137 (194)
|+||..+..++|||+|.++.. .++|+|+||+++||||||||+.. ...+.+++|......... ..+.+.|.+++.
T Consensus 1 i~~g~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~--~~~~~v~~g~~~~~~~~~--~~~~~~v~~~~~ 76 (220)
T PF00089_consen 1 IVGGDPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDG--ASDIKVRLGTYSIRNSDG--SEQTIKVSKIII 76 (220)
T ss_dssp SBSSEECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTS--GGSEEEEESESBTTSTTT--TSEEEEEEEEEE
T ss_pred CCCCEECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccc--cccccccccccccccccc--cccccccccccc
Confidence 689999999999999999874 57999999999999999999987 567888999833332221 257889999999
Q ss_pred CCCCCCCCCCCcccEEEEEEcCccccCCCceeeecCCCC
Q psy12785 138 HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176 (194)
Q Consensus 138 hp~y~~~~~~~~nDIALl~L~~~~~~~~~v~PiCLp~~~ 176 (194)
||.|+.. ...+|||||+|++++.+.+.++|+||+...
T Consensus 77 h~~~~~~--~~~~DiAll~L~~~~~~~~~~~~~~l~~~~ 113 (220)
T PF00089_consen 77 HPKYDPS--TYDNDIALLKLDRPITFGDNIQPICLPSAG 113 (220)
T ss_dssp ETTSBTT--TTTTSEEEEEESSSSEHBSSBEESBBTSTT
T ss_pred ccccccc--cccccccccccccccccccccccccccccc
Confidence 9999743 357899999999999999999999999843
No 4
>KOG3627|consensus
Probab=99.88 E-value=2.8e-22 Score=161.32 Aligned_cols=117 Identities=44% Similarity=0.728 Sum_probs=94.3
Q ss_pred cceeeCCeecCCCCCceEEEEeec---ceeeeeEEeeCCEEEeeecccccC-CcccEEEEEeEEeecCCCCCCC-ceEEE
Q psy12785 57 QRRIVGGDEAGFGSFPWQAYIRIG---SSRCGGSLVNRFHVVTAGHCVARA-SARQVQVTLGDYVINSAVEPLP-AYTFG 131 (194)
Q Consensus 57 ~~ri~gG~~~~~~~~Pw~v~l~~~---~~~CgGtLIs~~~VLTAAhC~~~~-~~~~~~v~~G~~~~~~~~~~~~-~~~~~ 131 (194)
..||+||.++..+++||+++++.. .+.|||+||+++||||||||+... .. .+.|++|++.......... .....
T Consensus 10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~~~ 88 (256)
T KOG3627|consen 10 EGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLVGD 88 (256)
T ss_pred cCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCCCc-ceEEEECccccccccccCchhhhce
Confidence 479999999999999999999774 579999999999999999999874 33 8889999876544322111 23445
Q ss_pred eEEEEECCCCCCCCCCCc-ccEEEEEEcCccccCCCceeeecCCCC
Q psy12785 132 VRKINVHPYFKFTPQADR-YDVAVLRLDRPVQYMPHIAPICLPEKG 176 (194)
Q Consensus 132 v~~i~~hp~y~~~~~~~~-nDIALl~L~~~~~~~~~v~PiCLp~~~ 176 (194)
+.+++.||.|+. .... ||||||+|++++.|+++|+|||||...
T Consensus 89 v~~~i~H~~y~~--~~~~~nDiall~l~~~v~~~~~i~piclp~~~ 132 (256)
T KOG3627|consen 89 VEKIIVHPNYNP--RTLENNDIALLRLSEPVTFSSHIQPICLPSSA 132 (256)
T ss_pred eeEEEECCCCCC--CCCCCCCEEEEEECCCcccCCcccccCCCCCc
Confidence 778889999864 3334 999999999999999999999998544
No 5
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.9e-16 Score=126.89 Aligned_cols=104 Identities=31% Similarity=0.434 Sum_probs=81.2
Q ss_pred CCCcceeeCCeecCCCCCceEEEEee------cceeeeeEEeeCCEEEeeecccccCCcccEEEEEeEEeecCCCCCCCc
Q psy12785 54 QGAQRRIVGGDEAGFGSFPWQAYIRI------GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPA 127 (194)
Q Consensus 54 ~~~~~ri~gG~~~~~~~~Pw~v~l~~------~~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~ 127 (194)
++.+.||+||..+..++||++|++.. ...+|||+++..+||||||||+....+-...+..+..++....+ .
T Consensus 27 devs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~Sq---~ 103 (413)
T COG5640 27 DEVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSSQ---A 103 (413)
T ss_pred cccceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEeccccccc---c
Confidence 34568999999999999999998832 23589999999999999999998765444444445555543322 4
Q ss_pred eEEEeEEEEECCCCCCCCCCCcccEEEEEEcCccc
Q psy12785 128 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 162 (194)
Q Consensus 128 ~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~~~ 162 (194)
+..+|++++.|..|. ..++.||||+++|.++..
T Consensus 104 ~rg~vr~i~~~efY~--~~n~~ND~Av~~l~~~a~ 136 (413)
T COG5640 104 ERGHVRTIYVHEFYS--PGNLGNDIAVLELARAAS 136 (413)
T ss_pred cCcceEEEeeecccc--cccccCcceeeccccccc
Confidence 567899999999885 677899999999998653
No 6
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=99.43 E-value=1e-12 Score=103.05 Aligned_cols=97 Identities=25% Similarity=0.420 Sum_probs=75.3
Q ss_pred CCCceEEEEee-cceeeeeEEeeCCEEEeeecccccCC--cccEEEEEeEEeecCCCCCCCceEEEeEEEEECCCCCCCC
Q psy12785 69 GSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARAS--ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTP 145 (194)
Q Consensus 69 ~~~Pw~v~l~~-~~~~CgGtLIs~~~VLTAAhC~~~~~--~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~ 145 (194)
-.|||.|.++. |.+.|.|+||.+.|+|++..|+.+-+ .....+.+|........+....|.+.|..+..-|
T Consensus 14 y~WPWlA~IYvdG~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~------ 87 (267)
T PF09342_consen 14 YHWPWLADIYVDGRYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP------ 87 (267)
T ss_pred ccCcceeeEEEcCeEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeecc------
Confidence 35999999976 67899999999999999999998743 4667889997664333333334555554433322
Q ss_pred CCCcccEEEEEEcCccccCCCceeeecCC
Q psy12785 146 QADRYDVAVLRLDRPVQYMPHIAPICLPE 174 (194)
Q Consensus 146 ~~~~nDIALl~L~~~~~~~~~v~PiCLp~ 174 (194)
.-+++||.|++|+.|+.+|+|.+||+
T Consensus 88 ---~S~v~LLHL~~~~~fTr~VlP~flp~ 113 (267)
T PF09342_consen 88 ---ESNVLLLHLEQPANFTRYVLPTFLPE 113 (267)
T ss_pred ---ccceeeeeecCcccceeeeccccccc
Confidence 45999999999999999999999996
No 7
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=99.07 E-value=1.2e-09 Score=89.40 Aligned_cols=130 Identities=17% Similarity=0.321 Sum_probs=81.0
Q ss_pred CCCCCCcccCCCCcceeeCCeecCCCCCceEEEEeecc-----eeeeeEEeeCCEEEeeecccccCCcccE---------
Q psy12785 44 DPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGS-----SRCGGSLVNRFHVVTAGHCVARASARQV--------- 109 (194)
Q Consensus 44 ~~~Cg~~~~~~~~~~ri~gG~~~~~~~~Pw~v~l~~~~-----~~CgGtLIs~~~VLTAAhC~~~~~~~~~--------- 109 (194)
...||.... ....++..|..+...+.||.+.+.... ..++|+|||+|||||++||+..... .|
T Consensus 28 l~~CG~~~~--~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~-~W~~~~~~~~~ 104 (282)
T PF03761_consen 28 LETCGKKKL--PYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKS-KWLNGEEFDNK 104 (282)
T ss_pred HHhcCCCCC--CCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEeccc-ccccCcccccc
Confidence 466996632 234567889999999999999886632 4579999999999999999974211 11
Q ss_pred EEEEe--E----------Eee--cCCCCCCCceEEEeEEEEECCCC--CCCCCCCcccEEEEEEcCccccCCCceeeecC
Q psy12785 110 QVTLG--D----------YVI--NSAVEPLPAYTFGVRKINVHPYF--KFTPQADRYDVAVLRLDRPVQYMPHIAPICLP 173 (194)
Q Consensus 110 ~v~~G--~----------~~~--~~~~~~~~~~~~~v~~i~~hp~y--~~~~~~~~nDIALl~L~~~~~~~~~v~PiCLp 173 (194)
...-+ . ..+ .............+.++++--.- ........++++||+|+++ ++..+.|+|||
T Consensus 105 ~C~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~ 182 (282)
T PF03761_consen 105 KCEGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLA 182 (282)
T ss_pred eeeCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeC
Confidence 00000 0 000 00000011223456666553322 1112234679999999999 88999999999
Q ss_pred CCCCC
Q psy12785 174 EKGKS 178 (194)
Q Consensus 174 ~~~~~ 178 (194)
.....
T Consensus 183 ~~~~~ 187 (282)
T PF03761_consen 183 DSSTN 187 (282)
T ss_pred CCccc
Confidence 76544
No 8
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=97.60 E-value=0.00026 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.2
Q ss_pred eeeEEeeCC-EEEeeecccccC
Q psy12785 84 CGGSLVNRF-HVVTAGHCVARA 104 (194)
Q Consensus 84 CgGtLIs~~-~VLTAAhC~~~~ 104 (194)
|+|.+|.++ +|||++||+...
T Consensus 1 GTGf~i~~~g~ilT~~Hvv~~~ 22 (120)
T PF13365_consen 1 GTGFLIGPDGYILTAAHVVEDW 22 (120)
T ss_dssp EEEEEEETTTEEEEEHHHHTCC
T ss_pred CEEEEEcCCceEEEchhheecc
Confidence 689999999 999999999864
No 9
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00039 Score=55.85 Aligned_cols=41 Identities=27% Similarity=0.525 Sum_probs=31.5
Q ss_pred ecCCCCCceEEEEee----cceeeeeEEeeCCEEEeeecccccCC
Q psy12785 65 EAGFGSFPWQAYIRI----GSSRCGGSLVNRFHVVTAGHCVARAS 105 (194)
Q Consensus 65 ~~~~~~~Pw~v~l~~----~~~~CgGtLIs~~~VLTAAhC~~~~~ 105 (194)
......|||-+-... +..-|+++||+++.||||+||+.+..
T Consensus 43 V~dt~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s~~ 87 (251)
T COG3591 43 VTDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSPD 87 (251)
T ss_pred cccCCCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEecCC
Confidence 345567999865533 34567789999999999999998754
No 10
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.49 E-value=0.094 Score=45.60 Aligned_cols=58 Identities=29% Similarity=0.480 Sum_probs=37.7
Q ss_pred ceeeeeEEeeCC-EEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEECCCCCCCCCCCcccEEEEEEcC
Q psy12785 81 SSRCGGSLVNRF-HVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 159 (194)
Q Consensus 81 ~~~CgGtLIs~~-~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~ 159 (194)
...++|.+|++. +|||++|.+.+. ..+.|.+.. ...+..+-+..++ ..|+|||+++.
T Consensus 57 ~~~GSGfii~~~G~IlTn~Hvv~~~--~~i~V~~~~-----------~~~~~a~vv~~d~---------~~DlAllkv~~ 114 (428)
T TIGR02037 57 RGLGSGVIISADGYILTNNHVVDGA--DEITVTLSD-----------GREFKAKLVGKDP---------RTDIAVLKIDA 114 (428)
T ss_pred cceeeEEEECCCCEEEEcHHHcCCC--CeEEEEeCC-----------CCEEEEEEEEecC---------CCCEEEEEecC
Confidence 357999999976 999999999764 344444321 1223343333333 35999999985
Q ss_pred c
Q psy12785 160 P 160 (194)
Q Consensus 160 ~ 160 (194)
+
T Consensus 115 ~ 115 (428)
T TIGR02037 115 K 115 (428)
T ss_pred C
Confidence 4
No 11
>PRK10898 serine endoprotease; Provisional
Probab=93.31 E-value=0.75 Score=39.07 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=36.3
Q ss_pred eeeeeEEeeCC-EEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEECCCCCCCCCCCcccEEEEEEcCc
Q psy12785 82 SRCGGSLVNRF-HVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 160 (194)
Q Consensus 82 ~~CgGtLIs~~-~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~ 160 (194)
..-+|.+|++. +|||++|-+... ..+.|.+.. ...+..+-+-.+| .+|||||+++..
T Consensus 78 ~~GSGfvi~~~G~IlTn~HVv~~a--~~i~V~~~d-----------g~~~~a~vv~~d~---------~~DlAvl~v~~~ 135 (353)
T PRK10898 78 TLGSGVIMDQRGYILTNKHVINDA--DQIIVALQD-----------GRVFEALLVGSDS---------LTDLAVLKINAT 135 (353)
T ss_pred ceeeEEEEeCCeEEEecccEeCCC--CEEEEEeCC-----------CCEEEEEEEEEcC---------CCCEEEEEEcCC
Confidence 46789999976 999999998753 344554321 1223333333333 469999999753
No 12
>PRK10942 serine endoprotease; Provisional
Probab=92.90 E-value=0.51 Score=41.73 Aligned_cols=56 Identities=29% Similarity=0.499 Sum_probs=36.0
Q ss_pred eeeeeEEeeC--CEEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEECCCCCCCCCCCcccEEEEEEcC
Q psy12785 82 SRCGGSLVNR--FHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 159 (194)
Q Consensus 82 ~~CgGtLIs~--~~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~ 159 (194)
...+|.+|+. -+|||.+|.+.+. ..+.|.+.. ...+..+-+-.++ ..||||||++.
T Consensus 111 ~~GSG~ii~~~~G~IlTn~HVv~~a--~~i~V~~~d-----------g~~~~a~vv~~D~---------~~DlAvlki~~ 168 (473)
T PRK10942 111 ALGSGVIIDADKGYVVTNNHVVDNA--TKIKVQLSD-----------GRKFDAKVVGKDP---------RSDIALIQLQN 168 (473)
T ss_pred ceEEEEEEECCCCEEEeChhhcCCC--CEEEEEECC-----------CCEEEEEEEEecC---------CCCEEEEEecC
Confidence 4688999985 5999999998764 345555421 1223333333333 45999999964
No 13
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=92.80 E-value=0.6 Score=39.60 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=35.7
Q ss_pred eeeeEEeeCC-EEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEECCCCCCCCCCCcccEEEEEEcCc
Q psy12785 83 RCGGSLVNRF-HVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 160 (194)
Q Consensus 83 ~CgGtLIs~~-~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~ 160 (194)
..+|.+|++. +|||++|.+... ..+.|.+.. ...+..+-+..++ ..|+||||++..
T Consensus 79 ~GSG~vi~~~G~IlTn~HVV~~~--~~i~V~~~d-----------g~~~~a~vv~~d~---------~~DlAvlkv~~~ 135 (351)
T TIGR02038 79 LGSGVIMSKEGYILTNYHVIKKA--DQIVVALQD-----------GRKFEAELVGSDP---------LTDLAVLKIEGD 135 (351)
T ss_pred eEEEEEEeCCeEEEecccEeCCC--CEEEEEECC-----------CCEEEEEEEEecC---------CCCEEEEEecCC
Confidence 5889999876 999999999753 234444311 1223333333333 459999999753
No 14
>PRK10139 serine endoprotease; Provisional
Probab=92.20 E-value=0.71 Score=40.60 Aligned_cols=57 Identities=23% Similarity=0.466 Sum_probs=37.2
Q ss_pred eeeeeEEeeC--CEEEeeecccccCCcccEEEEEeEEeecCCCCCCCceEEEeEEEEECCCCCCCCCCCcccEEEEEEcC
Q psy12785 82 SRCGGSLVNR--FHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 159 (194)
Q Consensus 82 ~~CgGtLIs~--~~VLTAAhC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~ 159 (194)
...+|.+|+. -+|||.+|.+.+. ..+.|.+.. ...+..+-+-..+ ..||||||++.
T Consensus 90 ~~GSG~ii~~~~g~IlTn~HVv~~a--~~i~V~~~d-----------g~~~~a~vvg~D~---------~~DlAvlkv~~ 147 (455)
T PRK10139 90 GLGSGVIIDAAKGYVLTNNHVINQA--QKISIQLND-----------GREFDAKLIGSDD---------QSDIALLQIQN 147 (455)
T ss_pred ceEEEEEEECCCCEEEeChHHhCCC--CEEEEEECC-----------CCEEEEEEEEEcC---------CCCEEEEEecC
Confidence 4688999974 6999999999764 355555421 1223343333333 45999999975
Q ss_pred c
Q psy12785 160 P 160 (194)
Q Consensus 160 ~ 160 (194)
+
T Consensus 148 ~ 148 (455)
T PRK10139 148 P 148 (455)
T ss_pred C
Confidence 3
No 15
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.
Probab=29.74 E-value=34 Score=32.01 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=17.8
Q ss_pred eeeeEEeeCC-EEEeeeccccc
Q psy12785 83 RCGGSLVNRF-HVVTAGHCVAR 103 (194)
Q Consensus 83 ~CgGtLIs~~-~VLTAAhC~~~ 103 (194)
.|+|++||+. -|||-.||...
T Consensus 48 GCSgsfVS~~GLvlTNHHC~~~ 69 (698)
T PF10459_consen 48 GCSGSFVSPDGLVLTNHHCGYG 69 (698)
T ss_pred ceeEEEEcCCceEEecchhhhh
Confidence 5999999976 67899999854
No 16
>smart00680 CLIP Clip or disulphide knot domain. Present in horseshoe crab proclotting enzyme N-terminal domain, Drosophila Easter and silkworm prophenoloxidase-activating enzyme.
Probab=27.93 E-value=29 Score=20.12 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=11.1
Q ss_pred cccCCCC--CCCcceecC
Q psy12785 5 LIEGACG--NGFLYACCH 20 (194)
Q Consensus 5 ~~~~~C~--~~~~~vCc~ 20 (194)
+..+.|+ .+.+.||||
T Consensus 35 l~~~~Cg~~~~~~~vCCp 52 (52)
T smart00680 35 LRKSQCGFGNREPLVCCP 52 (52)
T ss_pred HHHccCCCCCCCEeeeCc
Confidence 4667886 346679996
No 17
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification.; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.
Probab=21.02 E-value=1.5e+02 Score=23.88 Aligned_cols=56 Identities=16% Similarity=0.415 Sum_probs=28.7
Q ss_pred EeeCCEEEeeecccccCCcccEEEE--EeEEeecCCCCCCCceEEEeEEEEECCCCCCCCCCCcccEEEEEEcCccc
Q psy12785 88 LVNRFHVVTAGHCVARASARQVQVT--LGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 162 (194)
Q Consensus 88 LIs~~~VLTAAhC~~~~~~~~~~v~--~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~~~ 162 (194)
+.--.|+||-+|-+...... +.+. -|.+.+... .++-+||-. ..||.||+|.+.+.
T Consensus 37 igyG~~iItn~HLf~~nng~-L~i~s~hG~f~v~nt-----------~~lkv~~i~-------~~DiviirmPkDfp 94 (235)
T PF00863_consen 37 IGYGSYIITNAHLFKRNNGE-LTIKSQHGEFTVPNT-----------TQLKVHPIE-------GRDIVIIRMPKDFP 94 (235)
T ss_dssp EEETTEEEEEGGGGSSTTCE-EEEEETTEEEEECEG-----------GGSEEEE-T-------CSSEEEEE--TTS-
T ss_pred EeECCEEEEChhhhccCCCe-EEEEeCceEEEcCCc-----------cccceEEeC-------CccEEEEeCCcccC
Confidence 34568999999998664322 3332 223322211 122244421 45999999987654
No 18
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.86 E-value=1.6e+02 Score=21.88 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=20.7
Q ss_pred cccEEEEEEcCccccCC-CceeeecCCC
Q psy12785 149 RYDVAVLRLDRPVQYMP-HIAPICLPEK 175 (194)
Q Consensus 149 ~nDIALl~L~~~~~~~~-~v~PiCLp~~ 175 (194)
.-=|+|++|.+|+.+.. .|.-|-||..
T Consensus 36 GRPI~l~~L~qPl~~~~~~I~cvELP~P 63 (149)
T cd07268 36 GRPIALIKLEKPLQFAGWSISIVELPFP 63 (149)
T ss_pred CeeEEEEEcCCCceeCCcEEEEEEeCCC
Confidence 34689999999998886 4677778765
Done!