RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12785
(194 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 127 bits (320), Expect = 1e-36
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
IVGG EA GSFPWQ ++ R CGGSL++ V+TA HCV ++ V LG +
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHD 60
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
++S V+K+ VHP + P D+A+L+L RPV ++ PICLP G
Sbjct: 61 LSSNEG--GGQVIKVKKVIVHP--NYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSG 115
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 124 bits (313), Expect = 1e-35
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 59 RIVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDY 116
RIVGG EA GSFPWQ ++ G R CGGSL++ V+TA HCV + ++V LG +
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLGSH 60
Query: 117 VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
++S V K+ +HP + P D+A+L+L PV ++ PICLP
Sbjct: 61 DLSS---GEEGQVIKVSKVIIHP--NYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSN 115
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 96.4 bits (240), Expect = 6e-25
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 60 IVGGDEAGFGSFPWQA--YIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
IVGGDEA GSFPWQ + G CGGSL++ V+TA HCV ++A+ V+V LG +
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCV--SNAKSVRVVLGAHN 58
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
I F V+K+ VHP + P D D+A+L+L PV + PICLP
Sbjct: 59 IVLREGGEQ--KFDVKKVIVHP--NYNPDTD-NDIALLKLKSPVTLGDTVRPICLPTAS 112
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 45.3 bits (107), Expect = 6e-06
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 50 SVKNQGAQRRIVGGDEAGFGSFPWQA----YIRIGSSR--CGGSLVNRFHVVTAGHCVAR 103
+ RI+GG A G +P I S CGGS + +V+TA HC
Sbjct: 23 AQTADEVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADA 82
Query: 104 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 160
+S V +N + + A VR I VH + ++P D+AVL L R
Sbjct: 83 SSPISSDVNRVVVDLNDSSQ---AERGHVRTIYVHEF--YSPGNLGNDIAVLELARA 134
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 33.5 bits (76), Expect = 0.054
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 72 PWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQ--VQVTLGDY-VINSAVEPLPA 127
PW A + + G+ RC G L++ V+ + C+ S + V LG + + S P
Sbjct: 17 PWIAKVYVEGNYRCTGVLIDLSWVLVSHSCLWDTSLEHSYISVVLGGHKTLKSVKGPYEQ 76
Query: 128 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
+ +++ K P++ +++L L P + H+ P +P
Sbjct: 77 ----IYRVDC---RKDLPRSK---ISLLHLKSPATFSNHVLPTFVPS 113
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 31.4 bits (71), Expect = 0.13
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 21/86 (24%)
Query: 86 GSLVN-RFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT 144
G +V ++T H V A A +++V L D A V +
Sbjct: 3 GFVVGSDGLILTNAHVVEDADASEIEVVLPDGGRVPAE---------VVAADPD------ 47
Query: 145 PQADRYDVAVLRLDRPVQYMPHIAPI 170
D+A+L++D P+ +
Sbjct: 48 -----LDLALLKVDGPLLPAAPLLAS 68
>gnl|CDD|220338 pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710).
Members of this family are found, exclusively in the
vicinity of CRISPR repeats and other CRISPR-associated
(cas) genes, in Methanothermobacter thermautotrophicus
(Methanobacterium thermoformicicum), Thermus
thermophilus (Deinococcus-Thermus), Chloroflexus
aurantiacus (Chloroflexi), and Thermomicrobium roseum
(Thermomicrobia).
Length = 379
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 149 RYDVAVLRLDRPVQYMPHIAPICLPEKGKSTC-IPISNLLPKLIAMT 194
RYD A RL R ++ ++ L G T + LP+ +
Sbjct: 256 RYDDAAARLYRALEL---LSQHRLATYGIDTSNPDLPEKLPEGLRKA 299
>gnl|CDD|187878 cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as Cas02710 family.
Length = 378
Score = 28.1 bits (63), Expect = 3.4
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 149 RYDVAVLRLDRPVQYMPHIAPICLPEKGKSTC-IPISNLLPKLIAMT 194
RYD A RL R ++ ++ L G T LP+ +
Sbjct: 255 RYDDAAARLYRALEL---LSQHRLATYGIDTSNPDFDKALPEGLRSA 298
>gnl|CDD|227405 COG5073, VID24, Vacuolar import and degradation protein
[Intracellular trafficking and secretion].
Length = 272
Score = 27.1 bits (60), Expect = 6.6
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 6 IEGACGNGFLYACCHRNTAKASDHH------EIPQPLNYGPVQND 44
I GA +GF Y C + T ++ E Q L P Q
Sbjct: 220 ISGASIDGFYYCCLDQETGYIQGYYYHPKHAEKSQQLELVPEQPR 264
>gnl|CDD|213656 TIGR01838, PHA_synth_I, poly(R)-hydroxyalkanoic acid synthase,
class I. This model represents the class I subfamily of
poly(R)-hydroxyalkanoate synthases, which polymerizes
hydroxyacyl-CoAs with three to five carbons in the
hydroxyacyl backbone into aliphatic esters termed
poly(R)-hydroxyalkanoic acids. These polymers accumulate
as carbon and energy storage inclusions in many species
and can amount to 90 percent of the dry weight of cell
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 532
Score = 27.0 bits (60), Expect = 7.7
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 87 SLVNRFHVVTAGHCVARAS-----ARQVQVTLGDYVINSAVEPLPAY--TFGVRKINVHP 139
SLV +V GH V S A Q T DY+ + + L G +++N
Sbjct: 211 SLVR--WLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVG 268
Query: 140 Y 140
Y
Sbjct: 269 Y 269
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional.
Length = 245
Score = 26.8 bits (59), Expect = 7.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 20/57 (35%)
Query: 85 GGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF 141
+V R+ +V + HC R A+ V GVR IN+HP F
Sbjct: 59 VAEIVERYDLVLSFHCKQRFPAKLVN--------------------GVRCINIHPGF 95
>gnl|CDD|224957 COG2046, MET3, ATP sulfurylase (sulfate adenylyltransferase)
[Inorganic ion transport and metabolism].
Length = 397
Score = 26.9 bits (60), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 52 KNQGAQRRIVGGDEAGFGSF--PWQA 75
KN G IVG D AG G + P+ A
Sbjct: 274 KNYGCTHFIVGRDHAGVGDYYGPYDA 299
>gnl|CDD|202098 pfam02035, Coagulin, Coagulin.
Length = 172
Score = 26.1 bits (57), Expect = 9.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 44 DPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSRCG 85
+P G +V + R IV AGF WQ R GS+ CG
Sbjct: 94 EPVFGYTVAGE--FRVIVQAPRAGFRQCVWQHKCRFGSNSCG 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.443
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,761,633
Number of extensions: 878920
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 19
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)