RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12785
(194 letters)
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 150 bits (380), Expect = 3e-44
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 7 EGACGNGFLYACCHRNTAKASDHHEIPQPLNYGPVQNDPRCGVSVKNQGAQRRIVGG-DE 65
C + +L CC PV CG+ + G +I G +E
Sbjct: 81 ANECES-YLDVCCGLPEGGVLP--TPSPTPPVVPVLKPSFCGIRNER-GLDFKITGQTNE 136
Query: 66 AGFGSFPWQAYIRIGSSR---------CGGSLVNRFHVVTAGHCVA--RASARQVQVTLG 114
A +G FPW + + CGGSL+ V+T HCV +++ +++ G
Sbjct: 137 AEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAG 196
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
++ + E LP +R++ +H F P+ DVA+L LDRP+ +I ICLP+
Sbjct: 197 EWDTLTEKERLPYQERKIRQVIIHS--NFNPKTVVNDVALLLLDRPLVQADNIGTICLPQ 254
Query: 175 KGKS 178
+ +
Sbjct: 255 QSQI 258
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 140 bits (354), Expect = 2e-41
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 37 NYGPVQNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR------CGGSLVN 90
N P CG V+ +I+ GD+ FPW A I +S CGGSL+N
Sbjct: 4 NRRPELLPNDCGYQVEAD----KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLIN 59
Query: 91 RFHVVTAGHCVA----RASARQVQVTLGDYVINSAVE---------PLPAYTFGVRKINV 137
++VTA HCVA R +V LG++ + + P G+ +
Sbjct: 60 NRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQ 119
Query: 138 HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
HP + + +D+A++RL+R V++ +I P+CLP+
Sbjct: 120 HPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPN 158
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 139 bits (353), Expect = 9e-41
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 45 PRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCV--- 101
P CG V ++RI+GG +A G+FPWQ + I R GG+L+ ++TA H +
Sbjct: 75 PVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIH-GRGGGALLGDRWILTAAHTLYPK 133
Query: 102 --ARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLD 158
S + V LG + E + +R+++VHP Y + D+A+L L+
Sbjct: 134 EHEAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 190
Query: 159 RPVQYMPHIAPICLPEKG 176
V P++ PICLP+
Sbjct: 191 NSVTLGPNLLPICLPDND 208
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 138 bits (348), Expect = 2e-39
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 45 PRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCV--- 101
P CG V +++I+GG +A G+FPWQ + I R GG+L+ ++TA H +
Sbjct: 143 PVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG-RGGGALLGDRWILTAAHTLYPK 201
Query: 102 --ARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLD 158
S + V LG + E + +R+++VHP Y + D+A+L L+
Sbjct: 202 EHEAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELE 258
Query: 159 RPVQYMPHIAPICLPEKG 176
V P++ PICLP+
Sbjct: 259 NSVTLGPNLLPICLPDND 276
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 135 bits (342), Expect = 1e-38
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 30/192 (15%)
Query: 2 SSGLIEGACG--NGFLYACCHRNTAKASDHHEIPQPLNYGPVQNDPRCGVSVKNQGAQRR 59
+S L + CG NG + CC + + + CG + R
Sbjct: 70 ASYLQKALCGEFNGVRHFCCPSANIQHNSKVMSLFK------DENFDCGNFLSQ-----R 118
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
+ G E S PW A +R CGG++++ +++TA HCV ++ LG
Sbjct: 119 VSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLG 178
Query: 115 DYVINSAVEP----------LPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 164
++ I++ + P G+ K +H K+ + +D+A+L+L+R V +
Sbjct: 179 EHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHE--KYDARHIMHDIALLKLNRSVPFQ 236
Query: 165 PHIAPICLPEKG 176
HI PICLP
Sbjct: 237 KHIKPICLPITD 248
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 131 bits (331), Expect = 2e-38
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR---CGGSLVNRFHVVTAGHCVARASARQVQVTLGDY 116
IVGG EA FPWQ +R SS CGGS++N VV A HC+ + V + +G++
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 117 VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
++A T V I V+ + P DV+V++ + + ++ PIC P+
Sbjct: 61 DSSAAST--VRQTHDVDSIFVNE--NYDPATLENDVSVIKTAVAITFDINVGPICAPDPA 116
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 130 bits (330), Expect = 2e-38
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVA-----RASARQVQVTLG 114
I+GG +A G+FPWQ + I R GG+L+ ++TA H + S + V LG
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG-RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLG 59
Query: 115 DYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP 173
+ E + +R+++VHP Y + D+A+L L+ V P++ PICLP
Sbjct: 60 HTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP 116
Query: 174 EKG 176
+
Sbjct: 117 DND 119
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 130 bits (330), Expect = 9e-38
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 42 QNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR---CGGSLVNRFHVVTAG 98
+ + + RIV G +A G PWQ + S + CG SL++ V+TA
Sbjct: 13 SLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAA 72
Query: 99 HCVARA------SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDV 152
HC+ + + V +G + E + KI +HP + + D D+
Sbjct: 73 HCLLYPPWDKNFTENDLLVRIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLD-RDI 130
Query: 153 AVLRLDRPVQYMPHIAPICLPEKGKST 179
A+++L +PV + +I P+CLP++ +
Sbjct: 131 ALMKLKKPVAFSDYIHPVCLPDRETAA 157
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 129 bits (327), Expect = 1e-37
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 47 CGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVTAGHCV 101
CG + R+VGG++A S+PWQ ++ CGG+L+ HV+TA HC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 102 ARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 161
+ +V LG + E + GV I VH K+ R D+A+++L V
Sbjct: 61 SNTL--TYRVALGKNNLEVEDEA-GSLYVGVDTIFVHE--KWNSFLVRNDIALIKLAETV 115
Query: 162 QYMPHIAPICLPEKG 176
+ I CLP +G
Sbjct: 116 ELGDTIQVACLPSEG 130
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 132 bits (335), Expect = 2e-37
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 19/175 (10%)
Query: 11 GNGFLYAC-CHRNTAKASDHHEIPQPLNYGPVQNDPRCGVSVKNQGAQRRIVGGDEAGFG 69
N Y C + +P +P CG+S + G +I GG +A G
Sbjct: 122 VNDGKYVCEADGFWTSSKGEKSLPV--------CEPVCGLSARTTGG--QIYGGQKAKPG 171
Query: 70 SFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVA--RASARQVQVTLGDYVINSAVEPLPA 127
FPWQ I G + G+L+ V+TA H V + A + + +G S
Sbjct: 172 DFPWQVLIL-GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSP----HY 226
Query: 128 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGKSTCIP 182
+ +H + D D+A+++L+ V +I PICLP K + +
Sbjct: 227 TQAWSEAVFIHEGYTHDAGFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMR 280
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 130 bits (329), Expect = 3e-37
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 42 QNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCV 101
+ P CGV + ++RI+GG +A +FPWQ + GG+L+N + V+TA H V
Sbjct: 65 KCVPVCGVPREPFEEKQRIIGGSDADIKNFPWQVFFDNP--WAGGALINEYWVLTAAHVV 122
Query: 102 ARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD-----RYDVAVLR 156
R+ + +G + ++ + + +HP +K + D+A++R
Sbjct: 123 --EGNREPTMYVGSTSVQTS-RLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVR 179
Query: 157 LDRPVQYMPHIAPICLPEKGKSTCIP 182
L PV+ P ++PICLP +
Sbjct: 180 LKDPVKMGPTVSPICLPGTSSDYNLM 205
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 127 bits (321), Expect = 6e-37
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
+VGG++A G FPWQ + + CGGS+VN +VTA HCV + ++ V G++ I
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNI 58
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGKS 178
E V +I H F +D+A+L LD P+ ++ PIC+ +K +
Sbjct: 59 EE-TEH-TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYT 116
Query: 179 TCIP 182
Sbjct: 117 NIFL 120
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 126 bits (318), Expect = 3e-36
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR---CGGSLVNRFHVVTAGHCVARA------SARQVQ 110
IV G +A G PWQ + S + CG SL++ V+TA HC+ + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 111 VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPI 170
V +G + + E + KI +HP + + D D+A+++L +PV + +I P+
Sbjct: 61 VRIGKHSR-TRYERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFSDYIHPV 118
Query: 171 CLPEKGKST 179
CLP++ +
Sbjct: 119 CLPDRETAA 127
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 124 bits (314), Expect = 6e-36
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARAS--ARQVQVTLGDY 116
IVGG +A G++PW + CG SLV+ +V+A HCV + + LG +
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 117 VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ ++ P + +I ++P + + D+A++ L+ V Y +I PI LPE+
Sbjct: 61 MKSNLTSP-QTVPRLIDEIVINP--HYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEEN 117
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 128 bits (323), Expect = 1e-35
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 26/199 (13%)
Query: 5 LIEGACGNGFLYACCHRNTAKAS--DHHEIPQPLNYGPVQND-------------PRCGV 49
+E G+G + ++ P +G + D +
Sbjct: 96 AVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTER 155
Query: 50 SVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR---CGGSLVNRFHVVTAGHCVARA-- 104
+ RIV G +A G PWQ + S + CG SL++ V+TA HC+
Sbjct: 156 ELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW 215
Query: 105 ----SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 160
+ + V +G + E + KI +HP + + D D+A+++L +P
Sbjct: 216 DKNFTENDLLVRIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKP 273
Query: 161 VQYMPHIAPICLPEKGKST 179
V + +I P+CLP++ +
Sbjct: 274 VAFSDYIHPVCLPDRETAA 292
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 123 bits (312), Expect = 2e-35
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVA--RASARQVQVTLGDYV 117
I GG +A G FPWQ I G + G+L+ V+TA H V + A + + +G
Sbjct: 1 IYGGQKAKPGDFPWQVLIL-GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLK 59
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGK 177
S + +H + D D+A+++L+ V +I PICLP K
Sbjct: 60 RLSPHYT----QAWSEAVFIHEGYTHDAGFD-NDIALIKLNNKVVINSNITPICLPRKEA 114
Query: 178 STCIP 182
+ +
Sbjct: 115 ESFMR 119
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 123 bits (311), Expect = 2e-35
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR----CGGSLVNRFHVVTAGHCVARASARQVQVTLGD 115
++GG A G FPWQ + S CG SL++ ++A HCV ++V G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ + T V +H + + D+A+L L + +I LP
Sbjct: 61 WQQSD---TSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPAN 117
Query: 176 G 176
Sbjct: 118 N 118
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 124 bits (313), Expect = 2e-35
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 43 NDPRCGV-SVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCV 101
CG K + RI+GG + GS PW A I IG S C GSLV+ VV+A HC
Sbjct: 18 GRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIGDSFCAGSLVHTCWVVSAAHCF 77
Query: 102 ARAS-ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL--- 157
+ + V V LG + N + TFG+ K + + +D +D+ ++RL
Sbjct: 78 SHSPPRDSVSVVLGQHFFNRTTDVTQ--TFGIEKYIPYTLYSVFNPSD-HDLVLIRLKKK 134
Query: 158 -DRPVQYMPHIAPICLPEKG 176
DR + PICLPE G
Sbjct: 135 GDRCATRSQFVQPICLPEPG 154
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 122 bits (309), Expect = 5e-35
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARA-SARQVQVTLGDYV 117
IVGG G PWQ + + G+ CGG+L+N VV+A HC + + R + LG++
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGK 177
+ S + + V ++ + + P +D+A+LRL +PV H+ P+CLPE+
Sbjct: 61 L-SEHDG-DEQSRRVAQVIIPS--TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTF 116
Query: 178 S 178
S
Sbjct: 117 S 117
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 121 bits (305), Expect = 2e-34
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVAR------ASARQVQV 111
+VGG +A G +PWQ + CG SL++ +V+A HC + Q
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 112 TLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPIC 171
LG + + P +++I HP F YD+A+L L++P +Y + PI
Sbjct: 61 FLGLHDQSQRSAP-GVQERRLKRIISHP--FFNDFTFDYDIALLELEKPAEYSSMVRPIS 117
Query: 172 LPEKG 176
LP+
Sbjct: 118 LPDAS 122
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 119 bits (302), Expect = 5e-34
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 47 CGVSVKNQGAQR--RIVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVA 102
CGV RIV G+EA GS+PWQ ++ + CGGSL+N VVTA HC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
Query: 103 RASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 162
S V G++ S+ E + + K+ + K+ D+ +L+L
Sbjct: 61 TTSDV---VVAGEFDQGSSSEKIQ--KLKIAKVFKNS--KYNSLTINNDITLLKLSTAAS 113
Query: 163 YMPHIAPICLPEKG 176
+ ++ +CLP
Sbjct: 114 FSQTVSAVCLPSAS 127
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 120 bits (302), Expect = 5e-34
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
IVGG E G PWQA + + CGG++++ F+++TA HC+ +A + +V +GD
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAK--RFKVRVGDR- 57
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGK 177
N+ E V + H +FT + +D+AVLRL P+ + ++AP CLPE+
Sbjct: 58 -NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 178 ST 179
+
Sbjct: 115 AE 116
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 118 bits (299), Expect = 7e-34
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
IVGG A G FP+ I CGGSL+N V+TA HCV+ + Q+ G
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
S T + + VHP + + D+A+L+L + +I L G
Sbjct: 61 TS-----GGITSSLSSVRVHPSYS----GNNNDLAILKLSTSIPSGGNIGYARLAASG 109
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 119 bits (301), Expect = 8e-34
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
++ G G PWQ + + CG L++ V+TA HC+ ++++ V LG+Y
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYD 58
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGK 177
+ + ++++ VHP ++ D+A+L L +P I PICLP+ G
Sbjct: 59 LRRWEKW--ELDLDIKEVFVHP--NYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 178 S 178
+
Sbjct: 115 A 115
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 122 bits (307), Expect = 1e-33
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 47 CGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARAS 105
CG RIVGG + G +PWQ +R + CGGSL++ V+TA HC +
Sbjct: 108 CGRRKLPVD---RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERN 164
Query: 106 --ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD----RYDVAVLRLDR 159
+ +V G S GV+ + H + + D+A++ L
Sbjct: 165 RVLSRWRVFAGAVAQASP----HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSS 220
Query: 160 PVQYMPHIAPICLPEKG 176
P+ +I P+CLP G
Sbjct: 221 PLPLTEYIQPVCLPAAG 237
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 118 bits (298), Expect = 2e-33
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR----CGGSLVNRFHVVTAGHCVAR--ASARQVQVTL 113
IVGG EA +PWQ +R+ CGGSL++ V+TA HCV ++V L
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 114 GDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP 173
+ + + LP V +I VHP +F D+A+L L+ PV + + LP
Sbjct: 61 REQHLYYQDQLLP-----VSRIIVHP--QFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 174 EKG 176
Sbjct: 114 PAS 116
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 117 bits (296), Expect = 3e-33
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 60 IVGGDEAGFGSFPWQAYIR-----IGSSRCGGSLVNRFHVVTAGHCVAR---ASARQVQV 111
IVGG +A G FP+Q + CG S+ N + +TAGHCV + +Q+
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 112 TLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPIC 171
G+ ++ V KI +H F D+++L+L + + ++API
Sbjct: 61 VAGELDMSVNEGSEQ--IITVSKIILHE--NFDYNLLDNDISLLKLSGSLTFNDNVAPIA 116
Query: 172 LPEKG 176
LPE+G
Sbjct: 117 LPEQG 121
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 117 bits (295), Expect = 5e-33
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR----CGGSLVNRFHVVTAGHCVARAS-ARQVQVTLG 114
IVGG E+ +G +PWQ +++ + CGGSL+ V+TA HC ++ G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
++ + P +++I +H + +D+A+++L P++Y PI LP
Sbjct: 61 ILELSDITKDTP--FSQIKEIIIHQ--NYKVSEGNHDIALIKLQAPLEYTEFQKPISLPS 116
Query: 175 KG 176
KG
Sbjct: 117 KG 118
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 122 bits (307), Expect = 5e-33
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 27/174 (15%)
Query: 18 CCHRNTAKASDHHEIPQPLNYGPVQN---DPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQ 74
R+ D + Q + + D CGV + + + PW
Sbjct: 188 DGERHAFILQDTKALHQVFEHMLDVSKLTDTICGV---------GNMSANASDQERTPWH 238
Query: 75 AYIRIGSS-RCGGSLVNRFHVVTAGHCVARAS-ARQVQVTLGDYVINSAVEPLPAYTFGV 132
I+ S C G+L++ V+TA HC + +V +GD E F +
Sbjct: 239 VTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKE------FLI 292
Query: 133 RKINVHPYF-------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGKST 179
K + P F + + D+A+L+L + V+ H PICLP ++
Sbjct: 293 EKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEAN 346
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 113 bits (286), Expect = 5e-33
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
IV G+EA GS+PWQ ++ + CGGSL+N VVTA HC S V G++
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDV---VVAGEFD 57
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
S+ E + K+ + K+ D+ +L+L + ++ +CLP
Sbjct: 58 QGSSSEK--IQKLKIAKVFKNS--KYNSLTINNDITLLKLSTAASFSQTVSAVCLPSAS 112
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 122 bits (308), Expect = 5e-33
Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 10/170 (5%)
Query: 12 NGFLYACCHRNTAKASDHHEIPQPLNYGPVQNDPRCGVSVKNQGAQRRIVGGDEAGFGSF 71
GF +D + + + CGV + ++RIVGG A G
Sbjct: 276 AGFASVAQEETEILTADMDAERRRIKS--LLPKLSCGVKNRMHIRRKRIVGGKRAQLGDL 333
Query: 72 PWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTF 130
PWQ I+ S CGG + ++TA HC+ + + Q+
Sbjct: 334 PWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLK-RIVIE 392
Query: 131 GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY----MPHIAPICLPEKG 176
V +I H + + D+A++ + + +P P C+P
Sbjct: 393 YVDRIIFHE--NYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSP 440
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 116 bits (294), Expect = 6e-33
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
+VGG++A S+PWQ ++ SS CGG+LV++ V+TA HC++ S+R +V LG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVLG 58
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
+ +++ + V K+ VH + ++ D+A+L+L PV I CLP
Sbjct: 59 RHSLSTNEPG--SLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPA 116
Query: 175 KG 176
G
Sbjct: 117 AG 118
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 121 bits (306), Expect = 1e-32
Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 22/185 (11%)
Query: 9 ACGNGFLYACCHRNTAKASDHHEIPQPLNYGPVQ-NDPRCGVS-----------VKNQGA 56
C F Y + + + N P + R G+S
Sbjct: 326 RCQ-FFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKI 384
Query: 57 QRRIVGGDEAGFGSFPWQAYIRIGSSR----CGGSLVNRFHVVTAGHCVARAS-ARQVQV 111
+ RIVGG + G +PWQ + S CGGS++ ++TA HC + ++V
Sbjct: 385 KPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRV 444
Query: 112 TLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPIC 171
G + E FGV++I +H ++ YD+A+L+L+ V Y PIC
Sbjct: 445 YSGILNQSEIKEDTS--FFGVQEIIIHD--QYKMAESGYDIALLKLETTVNYTDSQRPIC 500
Query: 172 LPEKG 176
LP KG
Sbjct: 501 LPSKG 505
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 116 bits (292), Expect = 1e-32
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARAS-ARQVQVTLGDYV 117
IVGG E G +PWQA ++ S RCG +L+N +V+A HC + + G +
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
S ++ G+R+I VH K+ + YD+++ L PV Y + +CLP+
Sbjct: 61 KPSKMK------RGLRRIIVHE--KYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDAS 111
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 116 bits (292), Expect = 1e-32
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
+VGG A S+PWQ ++ S CGGSL+ + V+TA HCV SAR +V LG
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD--SARTWRVVLG 58
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
++ +N+ V + +H + A YD+A+LRL+ + LP
Sbjct: 59 EHNLNTNEGK--EQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPP 116
Query: 175 KG 176
Sbjct: 117 SN 118
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 117 bits (294), Expect = 1e-32
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 15/149 (10%)
Query: 39 GPVQNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR------CGGSLVNRF 92
P + +CG + +I+GG+ + PW A I CGGSL++
Sbjct: 5 PPEELKFQCGQKTLRP--RFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPC 62
Query: 93 HVVTAGHCVARAS-ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYD 151
V++A HC V LG +NS + F V + +H + A D
Sbjct: 63 WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQ--GEMKFEVENLILHKDYSADTLAHHND 120
Query: 152 VAVLRLDRP----VQYMPHIAPICLPEKG 176
+A+L++ Q I ICLP
Sbjct: 121 IALLKIRSKEGRCAQPSRTIQTICLPSMY 149
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 116 bits (292), Expect = 1e-32
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVARAS-ARQVQVTLGDYVI 118
I+GG + GS PW A I IG S C GSLV+ VV+A HC + + V V LG +
Sbjct: 1 IIGGSSSLPGSHPWLAAIYIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFF 60
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPHIAPICLPE 174
N + TFG+ K + + +D +D+ ++RL DR + PICLPE
Sbjct: 61 NRTTDVTQ--TFGIEKYIPYTLYSVFNPSD-HDLVLIRLKKKGDRCATRSQFVQPICLPE 117
Query: 175 KG 176
G
Sbjct: 118 PG 119
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 115 bits (291), Expect = 2e-32
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR----CGGSLVNRFHVVTAGHCVARAS-ARQVQVTLG 114
IVGG + G +PWQ + S CGGS++ ++TA HC + ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
+ E FGV++I +H ++ YD+A+L+L+ V Y PI LP
Sbjct: 61 ILNQSEIKEDTS--FFGVQEIIIHD--QYKMAESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 175 KG 176
KG
Sbjct: 117 KG 118
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 115 bits (290), Expect = 2e-32
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+GG EA + P+ A +++ G+ CGG LV V++A HC+ A+ +VQV LG + +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
S EP + V + HP P +D+ +L+L P + P+
Sbjct: 61 -SQPEP-SKRLYDVLRAVPHP--DSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVD 114
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 115 bits (290), Expect = 3e-32
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 60 IVGGDEAGFGSFPWQAYIRI--GSSRCGGSLVNRFHVVTAGHCVAR-------------- 103
I G A G+ PW A + G CGGSL+ +VTA HC+ +
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 104 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 163
S ++ LG + + E GV+ +HP ++ P DVA++ L
Sbjct: 61 LSPSDFKIILGKHWRLRSDEN--EQHLGVKHTTLHP--QYDPNTFENDVALVELLESPVL 116
Query: 164 MPHIAPICLPEKG 176
+ PICLPE
Sbjct: 117 NAFVMPICLPEGP 129
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 115 bits (290), Expect = 3e-32
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 47 CGV-SVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVAR 103
CG V+ + R+VGG A S+PWQ +R CGG+L++ V+TA HC+ +
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63
Query: 104 AS-ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 162
+ +V LG + + + V ++ + P D+A+L+L P
Sbjct: 64 SPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEPTR--------KDIALLKLSSPAV 113
Query: 163 YMPHIAPICLPEKG 176
+ P CLP
Sbjct: 114 ITDKVIPACLPSPN 127
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 114 bits (287), Expect = 5e-32
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
IVGG A ++P+ +++ G CG +L+ V++A HCVA + R V+V LG + +
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
S EP F V++I + P D+ +L+L+ ++ LP +G
Sbjct: 61 -SRREP-TRQVFAVQRI-FEN--GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQG 113
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 114 bits (288), Expect = 6e-32
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
+VGG EA S+P Q ++ S CGG+L+ + V+TA HCV R +V +G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL--TFRVVVG 58
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
++ +N GV+KI VHPY+ A YD+A+LRL + V ++ LP
Sbjct: 59 EHNLNQNNGT--EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPR 116
Query: 175 KG 176
G
Sbjct: 117 AG 118
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 113 bits (286), Expect = 7e-32
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVA-RASARQVQVTLGDYV 117
IVGG +A G +P+Q +R+ GS RCG S+++ +V+TA HCV ++ +++V +G
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
++ + V V+ + R DVA++ L P+++ + PI L
Sbjct: 61 LSE-----SGDVYDVEDAVVNK--NYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTND 112
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 113 bits (286), Expect = 1e-31
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 59 RIVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARAS-ARQVQVTLGDY 116
I+GG E S P+ A I+ G CGG L++ V+TA HC R + + V LG +
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 117 VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ S E T ++K + T D+ +++L + H+ + + K
Sbjct: 62 SL-SKNEA-SKQTLEIKKFIPFS--RVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSK 116
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 113 bits (284), Expect = 1e-31
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
IVGG +A FP+ A I+ G CGG+L++ V+TA C + V LG Y +
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
E + + PQ + D+ +L+LDR + + LP +
Sbjct: 61 -RRRER-QSRQTFSISSMSEN--GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQN 114
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 114 bits (287), Expect = 1e-31
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARAS-ARQVQVTLGDYV 117
I GG A G +PWQ I CGGSLV+ V++A HC +V LG +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
++S E ++ I HP + + + D+A+L+L RP+ + +I PI LP
Sbjct: 61 LDSYSEDAK--VSTLKDIIPHP--SYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQ 115
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 112 bits (283), Expect = 2e-31
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 63 GDEAGFGSFPWQAYIRIGSS-----RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
G++A S+ WQ ++ CGGSL+ VVTAGHC++ ++R QV LG+Y
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGEYD 59
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ + VHP + A D+A+++L R Q + LP G
Sbjct: 60 RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAG 118
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 112 bits (283), Expect = 3e-31
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+GG E S P+ A ++ GS CGG LV+ V+TA HC+A+ Q+++ LG + +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+S P TF ++ HP +K A D+A+L+LD V+ I P+ LP K
Sbjct: 60 DS-----PGLTFHIKAAIQHPRYK-PVPALENDLALLQLDGKVKPSRTIRPLALPSKR 111
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 111 bits (281), Expect = 5e-31
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
IVGG EA S+P QA + I CGGSL++ ++TA HC+ A V V LG + I
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCM--DGAGFVDVVLGAHNI 58
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
E T VH + D+AV+RL PV IA + LP
Sbjct: 59 RED-EA-TQVTIQSTDFTVHE--NYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTD 112
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 111 bits (281), Expect = 5e-31
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
IVGG G PWQA + + CGG++++ F+++TA HC+ +A + +V +GD
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAK--RFKVRVGDR- 57
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
N+ E V + H +FT + +D+AVLRL P+ + ++AP LP
Sbjct: 58 -NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAP 113
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 112 bits (283), Expect = 7e-31
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-------CGGSLVNRFHVVTAGHCVARAS-ARQVQV 111
I+GG +A G++PW ++I + CGGSL+N ++TA HC ++
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 112 TLGDYVINSAVEPL---PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 168
G + P V KI +H K++ ++ D+A++++ PV I
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHE--KYSASSEANDIALMKITPPVTCGHFIG 118
Query: 169 PICLPEKG 176
P CLP+
Sbjct: 119 PGCLPQFR 126
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 111 bits (280), Expect = 8e-31
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVIN 119
++GGDE + A + S CGG+L+N+ V+TA HC +++ LG + +
Sbjct: 1 VIGGDECNINEHRFLALVYANGSLCGGTLINQEWVLTARHCD----RGNMRIYLGMHNL- 55
Query: 120 SAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ F K D+ ++RL+RPV+ HIAP+ LP
Sbjct: 56 KVLNKDALRRFPKEKYFCLN--TRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNP 110
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 111 bits (279), Expect = 8e-31
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRI----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGD 115
IVGG EA S P+ A +++ GS CGG+L++ V+TA HC+ R V V LG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ + EP F V ++ ++ Y D+ +++L P +A + LP++
Sbjct: 61 HNV-RTQEP-TQQHFSVAQVFLNNYDAEN---KLNDILLIQLSSPANLSASVATVQLPQQ 115
Query: 176 G 176
Sbjct: 116 D 116
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 111 bits (279), Expect = 1e-30
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
I+ G + + PWQA + + ++ CG LV+ ++TA HC + +V LG Y
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVF----RVRLGHYS 56
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
++ E F K HP ++ D+ +++L+R ++ + PI +
Sbjct: 57 LSPVYES-GQQMFQGVKSIPHP--GYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSH 111
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 109 bits (276), Expect = 2e-30
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVIN 119
IVGG E S P Q + G CGGSLVN VV+A HC +V+V LG++ I
Sbjct: 1 IVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNIK 56
Query: 120 SAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
++ HP ++ D+ +++L +P ++ P+ LP
Sbjct: 57 VTEG--SEQFISSSRVIRHP--NYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC 109
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 110 bits (277), Expect = 2e-30
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
+V G + W +R + CGGSL+ V+TA C + + LG + +
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDV 59
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ + V ++ P D+ +++L RP ++ I LP G
Sbjct: 60 HGRGDEKCKQVLNVSQLVYGPEG--------SDLVLMKLARPAVLDDFVSTIDLPNYG 109
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 109 bits (275), Expect = 3e-30
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+ G++ S PWQA + + C G LV+ V++A HC + LG + +
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQN----SYTIGLGLHSL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ EP + HP ++ D+ +++LD V I I + +
Sbjct: 57 EADQEP-GSQMVEASLSVRHP--EYNRPLLANDLMLIKLDESVSESDTIRSISIASQ 110
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 108 bits (273), Expect = 1e-29
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR------CGGSLVNRFHVVTAGHCVARAS-ARQVQVT 112
I+GG+ + PW A I CGGSL++ V++A HC V
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 113 LGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP----VQYMPHIA 168
LG +NS + F V + +H + A D+A+L++ Q I
Sbjct: 61 LGRSRLNSNTQ--GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQ 118
Query: 169 PICLPEKG 176
I LP
Sbjct: 119 TISLPSMY 126
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 108 bits (271), Expect = 1e-29
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVAR-ASARQVQVTLGDYVI 118
+VGG A G FP+ + + CGG+L + V+TA HCV+ + + T G +
Sbjct: 1 VVGGTRAAQGEFPFMVRLSM---GCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDL 57
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
S+ A K+ P FT + D A+++L +P+ P
Sbjct: 58 QSS----SAVKVRSTKVLQAP--GFTKETYGKDWALIKLAQPINQ-----PTLKIATT 104
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 108 bits (271), Expect = 1e-29
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 62 GGDEAGFGSFPWQAYIRIGSSR----CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
GG++ PW +R CGG++++++ V+TA HCV + +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61
Query: 118 INSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY-MPHIAPICLPEKG 176
+ P + + + D+A+L L RP++ P LP+
Sbjct: 62 LWED----PGKSDPYVSHVYLS--FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIE 115
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 108 bits (272), Expect = 1e-29
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+GG ++ PW + + CGGS++ V+TA CV + + G
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH-IAPICLPEKG 176
+ + +KI ++ P + + AV+ + P++ I LP
Sbjct: 61 TT-----KGTSVMAKKI-YIV--RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLL 111
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 108 bits (271), Expect = 1e-29
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+ G E S PWQA + G CGG LV V+TA HC + + V LGD+ +
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQ----KYSVRLGDHSL 56
Query: 119 NSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ + P V + HP Y P+ +D+ ++RL + P+ L
Sbjct: 57 -QSRDQ-PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC 113
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 107 bits (271), Expect = 1e-29
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVIN 119
IVGG G + P+Q + G CGGSL+N VV+A HC +QV LG+ IN
Sbjct: 1 IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNIN 56
Query: 120 SAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
K VHP + D+ +++L +A I LP
Sbjct: 57 VVEG--NEQFISASKSIVHP--SYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSC 109
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 108 bits (271), Expect = 1e-29
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+ G GS PWQ + G+ CGG LVN V+TA HC + V LG +
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN----EYTVHLGSDTL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
K HP ++ Q D+ +++L+ + + + LP +
Sbjct: 57 GDRRAQ----RIKASKSFRHP--GYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRC 108
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 108 bits (271), Expect = 1e-29
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
I+ G EA G FP+QA + I CGGSL++ ++TA HCV A V V LG
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCV--HDAVSVVVYLG 58
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
V +I H F P DVA++++ V+Y +I PI LP
Sbjct: 59 SAVQYE-----GEAVVNSERIISHS--MFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPS 110
Query: 175 KG 176
Sbjct: 111 GE 112
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 110 bits (276), Expect = 1e-29
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 12/170 (7%)
Query: 18 CCHRNTAKASDHHEIPQPLNYGPVQNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYI 77
C + + Y ++ +C + PWQ +
Sbjct: 53 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC-GVLTSEKRAPDLQDLPWQVKL 111
Query: 78 RIGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKI 135
+ CGG ++ V+T C V+ + + + +
Sbjct: 112 TNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLM-------IKITHV 164
Query: 136 NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGKSTCIPISN 185
+VH ++ A D+++L L+ P+Q P+C PEK + + I
Sbjct: 165 HVHM--RYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPR 212
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 111 bits (280), Expect = 3e-29
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 32/151 (21%)
Query: 42 QNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVT 96
Q+ CG+ + PWQA I + C G++V+ + V+T
Sbjct: 206 QSLSLCGM---------VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLT 256
Query: 97 AGHCVA-RASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQAD 148
A HC ++V++G + + HP + P+
Sbjct: 257 AAHCFTVDDKEHSIKVSVGGEKR----------DLEIEVVLFHPNYNINGKKEAGIPEFY 306
Query: 149 RYDVAVLRLDRPVQYMPHIAPICLPEKGKST 179
YDVA+++L ++Y I PICLP +T
Sbjct: 307 DYDVALIKLKNKLKYGQTIRPICLPCTEGTT 337
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 107 bits (269), Expect = 3e-29
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR--CGGSLVNRFHVVTAGHCVARAS--ARQVQVTLGD 115
+VGG G+ PW +R + CGGSLV ++TA C + +V LG
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
N V K+ P + +L+L+R V +A ICLP +
Sbjct: 58 LFQNPQHGEPSLQRVPVAKMVCGPSG--------SQLVLLKLERSVTLNQRVALICLPPE 109
Query: 176 G 176
Sbjct: 110 W 110
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 107 bits (269), Expect = 4e-29
Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-------CGGSLVNRFHVVTAGHCVA-RASARQVQV 111
I GG A S PWQA I R CGG L++ +++A HC R + V
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 112 TLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLD----RPVQYMPHI 167
LG E F V K VH +F D+A+L+L R Q +
Sbjct: 61 ILGRTYRVVPGE--EEQKFEVEKYIVHK--EFDDDTYDNDIALLQLKSDSSRCAQESSVV 116
Query: 168 APICLPEKG 176
+CLP
Sbjct: 117 RTVCLPPAD 125
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 106 bits (268), Expect = 4e-29
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR---CGGSLVNRFHVVTAGHCVARASARQVQVTLGDY 116
+VGGDE P+ + +S C G+L+NR V+TA HC R +++ LG +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRR----NIRIKLGMH 56
Query: 117 VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ K P D+ ++RL RPV Y HIAP+ LP +
Sbjct: 57 SK-NIRNEDEQIRVPRGKYFCLNTK--FPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRS 113
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 106 bits (267), Expect = 5e-29
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 60 IVGGDEAGFGSFPWQAYIRI----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGD 115
I+GG EA S P+ AY+ I RCGG L+ V+TA HC + VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGA 56
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ I EP V++ HP + P+ D+ +L+L+R + + P+ LP
Sbjct: 57 HNI-KEQEP-TQQFIPVKRPIPHP--AYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSN 112
Query: 176 G 176
Sbjct: 113 K 113
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 107 bits (269), Expect = 7e-29
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 19 CHRNTAKASDHHEIPQPLNYGPVQNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIR 78
C + + Y ++ +C + PWQ +
Sbjct: 13 CQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC-ACGVLTSEKRAPDLQDLPWQVKLT 71
Query: 79 IGSSR--CGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKIN 136
+ CGG ++ V+T C R + V + + ++
Sbjct: 72 NSEGKDFCGGVIIRENFVLTTAKCSL--LHRNITVKTYFNRTSQDPL-----MIKITHVH 124
Query: 137 VHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGKSTCIPISN 185
VH ++ A D+++L L+ P+Q P+C PEK + + I
Sbjct: 125 VHM--RYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPR 171
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 106 bits (266), Expect = 9e-29
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR---CGGSLVNRFHVVTAGHCVARASARQVQVTLGDY 116
I+GGDE + + SR CGG+L+N+ V+TA HC + ++ LG +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRK----NFRIKLGMH 56
Query: 117 VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
K D+ ++RLD PV+ HIAP LP
Sbjct: 57 SK-KVPNEDEQTRVPKEKFFCLS--SKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSP 113
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 105 bits (264), Expect = 2e-28
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+GG+E S P+ + + + C G+L+ + V+TA HC ++ QV LG + I
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN---KRSQVILGAHSI 57
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
+ EP V+K +P + P D+ +L+L + ++ + LP+KG
Sbjct: 58 -TREEP-TKQIMLVKKEFPYP--CYDPATREGDLKLLQLTEKAKINKYVTILHLPKKG 111
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 104 bits (262), Expect = 3e-28
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
I+GG+E S P+ AY CGG LV V+TA HC R + VTLG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGR----SMTVTLG 56
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
+ I A E V K HP + P D+ +L+L R + + P+ LP
Sbjct: 57 AHNI-KAKEE-TQQIIPVAKAIPHP--DYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 175 KG 176
+
Sbjct: 113 RN 114
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 104 bits (261), Expect = 3e-28
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSR-----CGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
I+GG E+ S P+ A++ I + + CGG L++R V+TA HC R ++ V LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGR----EITVILG 56
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
+ + E V K +H + + +D+ +L+L++ V+ P + + LP
Sbjct: 57 AHDV-RKRES-TQQKIKVEKQIIHE--SYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 175 KG 176
Sbjct: 113 PS 114
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 104 bits (261), Expect = 4e-28
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 60 IVGGDEAGFGSFPWQAYIRI----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGD 115
I+GG EA S P+ A++ S CGG LV V+TA HC+ + VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL----GSSINVTLGA 56
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ I E VR+ HP + + D+ +L+L R ++PI LP
Sbjct: 57 HNI-MERER-TQQVIPVRRPIPHP--DYNDETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 176 G 176
Sbjct: 113 L 113
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 103 bits (259), Expect = 8e-28
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 60 IVGGDEAGFGSFPWQAYIRI----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGD 115
I+GG E+ S P+ AY++I G SRCGG LV V+TA HC + VTLG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGA 56
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 175
+ I E R+ HP ++ + + D+ +L+L R V+ ++ P+ LP
Sbjct: 57 HNI-QRREN-TQQHITARRAIRHP--QYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 176 G 176
Sbjct: 113 Q 113
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 102 bits (258), Expect = 9e-28
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-----GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLG 114
I+GG E S P+ AY+ I S CGG L+ R V+TA HC R + VTLG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 56
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
+ I + E V K HP K+ +D+ +L+L + + P
Sbjct: 57 AHNI-TEEED-TWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 175 KG 176
+
Sbjct: 113 QF 114
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 102 bits (256), Expect = 2e-27
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
+V G S P+QA + G CGG L++ V+TA HC +QV LG + +
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKP----NLQVFLGKHNL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 174
E V + +HP + + D+ +LRL RP + I P+ L
Sbjct: 57 RQ-RES-SQEQSSVVRAVIHP--DYDAASHDQDIMLLRLARPAKLSELIQPLPLER 108
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 101 bits (254), Expect = 5e-27
Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 59 RIVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYV 117
V S PW + + +CGG L++R V+TA HC + QV LG
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYND----KYQVWLGKNN 58
Query: 118 INSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRLDRPVQYMPHIA 168
EP V K HP F D+ +LRL +P +
Sbjct: 59 F-LEDEP-SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVK 116
Query: 169 PICLPEK 175
PI LP +
Sbjct: 117 PITLPTE 123
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 101 bits (253), Expect = 7e-27
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 8/118 (6%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
++GGDE + C G+L+N V+TA HC Q+ LG +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNT----NFQMKLGVHSK 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 176
E T ++ + P + D+ +++LD V HI P+ LP
Sbjct: 57 KVLNED--EQTRNPKEKFICPNK-KNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSP 111
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 100 bits (251), Expect = 2e-26
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
+VGG S PWQ + CGG L++R V+TA HC Q +V LG +
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVD----QYEVWLGKNKL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRLDRPVQYMPHIAP 169
EP A V K HP F D+ +LRL +P + P
Sbjct: 57 -FQEEP-SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKP 114
Query: 170 ICLPEK 175
I LP K
Sbjct: 115 IALPTK 120
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 99 bits (250), Expect = 2e-26
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
IVGG E S PWQ + G + CGG LV+ V+TA HC+ + + LG + +
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRN----KSVILLGRHSL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRLDRPVQYMPHIAP 169
E F V HP + +D+ +LRL P + +
Sbjct: 57 -FHPED-TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKV 114
Query: 170 ICLPEKG 176
+ LP +
Sbjct: 115 MDLPTQE 121
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 99.6 bits (249), Expect = 3e-26
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 16/125 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVIN 119
IVGG + S PWQ + CGG L++ V+TA HC + QV LG +
Sbjct: 1 IVGGYKCEKNSQPWQVAVI-NEYLCGGVLIDPSWVITAAHCYSN----NYQVLLGRNNL- 54
Query: 120 SAVEPLPAYTFGVRKINVHPYF---------KFTPQADRYDVAVLRLDRPVQYMPHIAPI 170
EP A VR+ HP + + D+ +L L P + I
Sbjct: 55 FKDEP-FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVI 113
Query: 171 CLPEK 175
LP K
Sbjct: 114 DLPTK 118
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 98.8 bits (247), Expect = 6e-26
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+GG E S PWQ + +CGG LV+ V+TA HC++ Q+ LG + +
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSD----DYQIWLGRHNL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFTPQAD---------RYDVAVLRLDRPVQYMPHIAP 169
S E A V + P F + +D+ +LRL +P + +
Sbjct: 57 -SKDED-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKI 114
Query: 170 ICLPEKG 176
+ LP +
Sbjct: 115 LDLPTQE 121
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 98.1 bits (245), Expect = 1e-25
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSS-RCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
IVGG E S PWQA + S+ +CGG LV+R V+TA HC+ + Q+ LG + +
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI----SDNYQLWLGRHNL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYF---------KFTPQADRYDVAVLRLDRPVQYM-PHIA 168
E A V + HP F + + +D+ +LRL P + +
Sbjct: 57 -FDDEN-TAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVK 114
Query: 169 PICLPEKG 176
+ LP +
Sbjct: 115 VVELPTEE 122
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 101 bits (252), Expect = 2e-25
Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 34/174 (19%)
Query: 21 RNTAKASDHHEIPQPLN--YGPVQNDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIR 78
++ K D + Q+ CG+ + PWQA I
Sbjct: 425 QHVFKVKDMENLEDVFYQMIDESQSLSLCGM---------VWEHRKGTDYHKQPWQAKIS 475
Query: 79 IGSSR-----CGGSLVNRFHVVTAGHCVARAS-ARQVQVTLGDYVINSAVEPLPAYTFGV 132
+ C G++V+ + V+TA HC ++V++G +
Sbjct: 476 VIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKR----------DLEI 525
Query: 133 RKINVHPYF-------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGKST 179
+ HP + P+ YDVA+++L ++Y I PICLP +T
Sbjct: 526 EVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTT 579
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 95.5 bits (237), Expect = 2e-23
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 43 NDPRCGVSVKNQGAQRRIVGGDEAGFGSFPWQAYIRI--GSSRCGGSLVNRFHVVTAGHC 100
+ V+ + R+VGG A S+PWQ +R G CGG+L++ V+TA HC
Sbjct: 545 SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHC 604
Query: 101 VARAS-ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 159
+ ++ +V LG + + + V ++ + P D+A+L+L
Sbjct: 605 LEKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEPTR--------KDIALLKLSS 654
Query: 160 PVQYMPHIAPICLPEKG 176
P + P CLP
Sbjct: 655 PAVITDKVIPACLPSPN 671
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 74.9 bits (185), Expect = 2e-18
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 60 IVGGDEAGFGSFPWQAYIRI-GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVI 118
I+GG E S PWQ I S +CGG LVN V+TA HC +V LG + +
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK----NDNYEVWLGRHNL 56
Query: 119 NSAVEPLPAYTFGVRKINVHPYFKFT 144
E A FGV HP F +
Sbjct: 57 -FENEN-TAQFFGVTADFPHPGFNLS 80
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 65.4 bits (159), Expect = 1e-13
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 60 IVGGDE----AGFGSFPWQA--YIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTL 113
++G D A P+ + YI G S C G+L+ ++T GHCV ++R
Sbjct: 2 VIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSY-SAK 60
Query: 114 GDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 161
G + + + V + A +YD AV++ D +
Sbjct: 61 GSVYPGMNDSTAVNGSANMTEFYVPSGY-INTGASQYDFAVIKTDTNI 107
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 46.6 bits (110), Expect = 1e-06
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 70 SFPWQAYIRI------GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVE 123
+ + I G+ G +V + ++T H V + IN
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNY 75
Query: 124 PLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 165
P +T + T + D+A+++ Q
Sbjct: 76 PNGGFTAE----------QITKYSGEGDLAIVKFSPNEQNKH 107
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 46.0 bits (108), Expect = 2e-06
Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 20/116 (17%)
Query: 60 IVGGDE----AGFGSFPWQAYIRI------GSSRCGGSLVNRFHVVTAGHCVARASARQV 109
I+ ++ + + I G+ G +V + ++T H V
Sbjct: 2 ILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPH 61
Query: 110 QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 165
+ IN P +T +I + D+A+++ Q
Sbjct: 62 ALKAFPSAINQDNYPNGGFT--AEQITKYS--------GEGDLAIVKFSPNEQNKH 107
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 42.5 bits (101), Expect = 1e-05
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 150 YDVAVLRLDRPVQYMPHIAPICLPEKG 176
+D+ +LRL P + + + LP +
Sbjct: 8 HDLMLLRLQSPAKITDAVKVLELPTQE 34
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 43.2 bits (101), Expect = 1e-05
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 17/90 (18%)
Query: 80 GSSRCGGSLVNRFH---VVTAGHCVARASARQVQVTLGDYVINSAVEP------LPAYTF 130
G C ++V + V TAGHC+ + G + N P +
Sbjct: 19 GDFVCSANIVASANQSTVATAGHCLHDGNG-------GQFARNFVFAPAYDYGESEHGVW 71
Query: 131 GVRKINVHPYFKFTPQADRYDVAVLRLDRP 160
++ + +D A L+
Sbjct: 72 AAEELVTSAEWA-NRGDFEHDYAFAVLETK 100
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 70 SFPWQAYIRI---GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGD---YVINSAVE 123
P+ + + GS+ G L+ + +VT H A+ +
Sbjct: 33 RSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEF 92
Query: 124 PLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 165
P P F +I PY D+A+++L +
Sbjct: 93 PTPYGKFEAEEIKESPY------GQGLDLAIIKLKPNEKGES 128
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 37.5 bits (87), Expect = 0.001
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 68 FGSFPWQAYIRI---GSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSA--V 122
+P+ + G + G L+ + V+T H A+ +V+ +
Sbjct: 38 RQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGN 97
Query: 123 EPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 160
P + V++I P+ D+A++RL
Sbjct: 98 TETPYGEYEVKEILQEPF------GAGVDLALIRLKPD 129
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 34.0 bits (78), Expect = 0.012
Identities = 19/115 (16%), Positives = 28/115 (24%), Gaps = 37/115 (32%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCG-GSLV---NRFHVVTAGHCVARASARQVQVTLGD 115
I GGD I + RC G V + ++ +TAGHC A+
Sbjct: 1 ISGGDA-----------IYSSTGRCSLGFNVRSGSTYYFLTAGHCTDGATT--WWANSAR 47
Query: 116 YVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPI 170
G + P D ++R
Sbjct: 48 -----------TTVLGTTSGSSFP---------NNDYGIVRYTNTTIPKDGTVGG 82
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 31.9 bits (71), Expect = 0.10
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 17/107 (15%)
Query: 72 PWQAYIRI-------GSSRCGGSLVN------RFHVVTAGHCV----ARASARQVQVTLG 114
+ IR G+ C GSLVN + + +TA HC + A++ V
Sbjct: 17 GRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQ 76
Query: 115 DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 161
+ + P D +L L+
Sbjct: 77 NSTCRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAA 123
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 28.8 bits (65), Expect = 0.71
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 24/76 (31%)
Query: 93 HVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDV 152
+VTA H V + V V + Y VR + D+
Sbjct: 31 DIVTAAHVV--GNNTFVNVCYEGLM----------YEAKVRYM------------PEKDI 66
Query: 153 AVLRLDRPVQYMPHIA 168
A + + +
Sbjct: 67 AFITCPGDLHPTARLK 82
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 28.7 bits (64), Expect = 0.92
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 16/88 (18%)
Query: 71 FPWQAYIRIGSSRCGGSLVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPAYTF 130
FP+ + S G +V + ++T H + +
Sbjct: 13 FPYTGVVAFKS--ATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIK--- 67
Query: 131 GVRKINVHPYFKFTPQADRYDVAVLRLD 158
K + DV+V++++
Sbjct: 68 -----------KIINYPGKEDVSVIQVE 84
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 27.2 bits (60), Expect = 2.9
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRCGGSLVNRFHVVTAGHC 100
++GG+ AY G SRC +TAGHC
Sbjct: 3 VIGGN----------AYTIGGRSRCSIGFAVNGGFITAGHC 33
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 27.2 bits (60), Expect = 3.2
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRC----GGSLVNRFHVVTAGHCVARASARQV 109
I GG+ I G SRC S+ H +TAGHC +++ +
Sbjct: 1 IAGGE-----------AITTGGSRCSLGFNVSVNGVAHALTAGHCTNISASWSI 43
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 27.0 bits (60), Expect = 3.7
Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 19/106 (17%)
Query: 70 SFPWQAYIRIGSSRCGGS--LVNRFHVVTAGHCVARASARQVQVTLGDYVINSAVEPLPA 127
P+ + + G+ +V + +VT H S + + + + +
Sbjct: 12 KEPYNSVVAFVG----GTGVVVGKNTIVTNKHIA--KSNDIFKNRVSA---HHSSKGKGG 62
Query: 128 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP 173
+ V+ I +P + D+A++ + +
Sbjct: 63 GNYDVKDIVEYPG--------KEDLAIVHVHETSTEGLNFNKNVSY 100
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 26.8 bits (59), Expect = 4.6
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 15/45 (33%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRC----GGSLVNRFHVVTAGHC 100
I+GG+ G+ RC ++ TAGHC
Sbjct: 3 IIGGNP-----------YYFGNYRCSIGFSVRQGSQTGFATAGHC 36
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 26.4 bits (58), Expect = 5.9
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 15/51 (29%)
Query: 60 IVGGDEAGFGSFPWQAYIRIGSSRC-GGSLVN---RFHVVTAGHCVARASA 106
++GG I G SRC V + VTAGHC ++
Sbjct: 1 VLGGGA-----------IYGGGSRCSAAFNVTKGGARYFVTAGHCTNISAN 40
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot
superfamily; 2.00A {Tachypleus tridentatus} SCOP:
g.17.1.5
Length = 175
Score = 25.8 bits (56), Expect = 8.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 55 GAQRRIVGGDEAGFGSFPWQAYIRIGSSRCG 85
G R IV AGF WQ R GS+ CG
Sbjct: 105 GEFRVIVQAPRAGFRQCVWQHKCRFGSNSCG 135
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 25.7 bits (56), Expect = 9.7
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 74 QAYIRIGSSRC----GGSLVNRFHVVTAGHCVARASA 106
Y +S C + VTAGHC +
Sbjct: 7 IEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVNAT 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.443
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,047,488
Number of extensions: 176544
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 111
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)