BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12788
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RHH4|IF172_DANRE Intraflagellar transport protein 172 homolog OS=Danio rerio
GN=ift172 PE=2 SV=1
Length = 1745
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/246 (57%), Positives = 183/246 (74%), Gaps = 4/246 (1%)
Query: 1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
G+++ H PPYAL+W I+ AG D+ + Y +G V + FDY+ E+EFTVA SS
Sbjct: 191 GKLLTHACPPYALAWGTNSIIVAGCDKKIVAYGKEGNVIQTFDYSRDR-AEKEFTVAASS 249
Query: 61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
PSGQ++VVGS+D +++F WSP K W+E K IPNLYTI+ALSWK+DGSR++ G LCG
Sbjct: 250 PSGQSIVVGSFDRLRVFNWSPRKGTWDESSPKEIPNLYTITALSWKKDGSRLSVGTLCGG 309
Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
VE+F+ L+R+I+K KFEM YV SQV+V+ L S G V+LKSQYGYEI +V +MG D
Sbjct: 310 VEMFDCCLRRSIYKNKFEMTYVGLSQVIVRNL---STGTRVVLKSQYGYEIDEVKVMGKD 366
Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
+YLVA T DTLLLGDL N LSEV W SG NEKF+F+N TVC++FNAGEL+++EYG+N+
Sbjct: 367 QYLVAHTSDTLLLGDLVSNKLSEVAWQGSGGNEKFFFENETVCMIFNAGELALVEYGSND 426
Query: 241 ILTCVR 246
IL VR
Sbjct: 427 ILGSVR 432
>sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homolog OS=Mus musculus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 297 bits (761), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 182/246 (73%), Gaps = 4/246 (1%)
Query: 1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
G++V HP PPYAL+W I+AAG DR + Y +G V + FDY+ +EREFT A +S
Sbjct: 191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249
Query: 61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
P GQ+VV+GSYD +++F WSP +S+WEE K I NLYT++AL+WKRDGSR+ G LCG
Sbjct: 250 PGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309
Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
VE F+ L+R+I+K KFE+ YV PSQV+VK LS G V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366
Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
RYLVA T DTLLLGDL+ N LSE+ W SG NEK++F+N VC++FNAGEL+++EYG+N+
Sbjct: 367 RYLVAHTSDTLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426
Query: 241 ILTCVR 246
L VR
Sbjct: 427 SLGSVR 432
>sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens
GN=IFT172 PE=1 SV=2
Length = 1749
Score = 296 bits (758), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 181/246 (73%), Gaps = 4/246 (1%)
Query: 1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
G++V HP PPYAL+W I+AAG DR + Y +G + + FDY+ +EREFT A SS
Sbjct: 191 GKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDP-QEREFTTAVSS 249
Query: 61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
P GQ+VV+GSYD +++F W P +S+WEE K I NLYTI+AL+WKRDGSR+ G LCG
Sbjct: 250 PGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGG 309
Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
VE F+ L+R+I+K KFE+ YV PSQV+VK LS G V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366
Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
RYLVA T +TLLLGDL+ N LSE+ W SG NEK++F+N VC++FNAGEL+++EYGNN+
Sbjct: 367 RYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNND 426
Query: 241 ILTCVR 246
L VR
Sbjct: 427 TLGSVR 432
>sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog OS=Rattus norvegicus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/246 (55%), Positives = 182/246 (73%), Gaps = 4/246 (1%)
Query: 1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
G++V HP PPYAL+W I+AAG DR + Y +G V + FDY+ +EREFT A +S
Sbjct: 191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249
Query: 61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
P GQ+VV+GSYD +++F WSP +S+WEE K I NLYT++AL+WKRDGSR+ G LCG
Sbjct: 250 PGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309
Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
VE F+ L+R+I+K KFE+ YV PSQ++VK LS G V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQLIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366
Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
RYLVA T DTLLLGDL+ N LSE+ W SG NEK++F+N VC++FNAGEL+++EYG+N+
Sbjct: 367 RYLVAHTSDTLLLGDLNTNRLSEIPWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426
Query: 241 ILTCVR 246
L VR
Sbjct: 427 SLGSVR 432
>sp|Q9W040|OSM1_DROME Intraflagellar transport protein osm-1 OS=Drosophila melanogaster
GN=osm-1 PE=3 SV=2
Length = 1772
Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 180/246 (73%), Gaps = 3/246 (1%)
Query: 1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
GRVVQHPVPP+AL+WP G A G D+ + Y+S GR R FD++ EREFTVA S
Sbjct: 208 GRVVQHPVPPFALAWPQGGFCAGGCDQRIVFYDSMGRQLRTFDHSRTE-GEREFTVAACS 266
Query: 61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
P+GQAV GS+D I++FAWSP + W E K + LYT+S+L W+RDG+R+A G + G+
Sbjct: 267 PNGQAVAFGSFDRIRIFAWSPRQGAWSESATKEVACLYTLSSLLWRRDGARLALGSVSGA 326
Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
V LFESVL+RT+W+ KFE+I+V+PSQ+LV+ L+ S+ + ++SQ G EI DV IMG D
Sbjct: 327 VLLFESVLRRTVWQDKFELIFVAPSQLLVRSLTEPSQ--ALTIESQLGLEIDDVRIMGRD 384
Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
YLVART ++L+L DL RNL SEV W SG +E+FYF+N TVCL+FN GELS++EYG N
Sbjct: 385 NYLVARTEESLILCDLTRNLSSEVPWTASGHHERFYFENPTVCLIFNVGELSLVEYGENS 444
Query: 241 ILTCVR 246
IL VR
Sbjct: 445 ILGSVR 450
>sp|Q5DM57|IF172_CHLRE Intraflagellar transport protein 172 OS=Chlamydomonas reinhardtii
GN=IFT172 PE=1 SV=1
Length = 1755
Score = 210 bits (534), Expect = 8e-54, Method: Composition-based stats.
Identities = 111/245 (45%), Positives = 158/245 (64%), Gaps = 7/245 (2%)
Query: 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
++V H PY+L W I AAG+D V Y+ +GR R FDY+ + + REFT +P
Sbjct: 198 QLVVHSCVPYSLGW-GSCIAAAGNDNRVVFYDLNGREIRSFDYSN-NDEVREFTTCAFNP 255
Query: 62 SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
SG VV G+Y+ ++ ++ ++ WEE +K I N Y +SA SWK DGS++ G + G+V
Sbjct: 256 SGDTVVFGTYNRFYMYTFNIQRNDWEEAGHKQIDNFYAVSAASWKPDGSKMTVGSMTGAV 315
Query: 122 ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 181
+++++ +KR ++KGKFE YVS S V+VK L G ++LKS YGYEI + I +DR
Sbjct: 316 DMYDACVKRHMYKGKFEFTYVSKSAVIVKTLK---TGMRIVLKSVYGYEIEKINIY-HDR 371
Query: 182 YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEI 241
YL+ART TLL+GDL LSE+ W DS +EKF+F+N VC+V AGEL I+EYG N++
Sbjct: 372 YLIARTTYTLLMGDLDTCKLSEIPW-DSDGSEKFHFENERVCMVHYAGELHIVEYGRNDV 430
Query: 242 LTCVR 246
L R
Sbjct: 431 LGTCR 435
>sp|Q22830|OSM1_CAEEL Intraflagellar transport protein osm-1 OS=Caenorhabditis elegans
GN=osm-1 PE=2 SV=4
Length = 1737
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 141/250 (56%), Gaps = 6/250 (2%)
Query: 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
++ VPPY L + ++ A SDR V Y +G V + FDY E+EF+ P
Sbjct: 188 KICTLQVPPYNLVFTNHGLVVATSDRRVLSYTENGVVQQQFDYNDQ--SEKEFSSISCDP 245
Query: 62 SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
+ Q VVV SYD ++LF+WS + W+E I N YTI AL WK DGS I G +CG V
Sbjct: 246 TAQNVVVASYDRLRLFSWSARRGAWDEGAPLEIQNAYTIGALGWKMDGSTIYAGTVCGGV 305
Query: 122 ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 181
+ L+R + K +FE YV+PS V+++ ++ +++ + S G I ++ IMG DR
Sbjct: 306 FSVDCCLRRGMLKSRFETTYVAPSHVILRDVTNDTRTNVI---SNKGLAIDELKIMGKDR 362
Query: 182 YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEI 241
Y++ T ++++ D SE+ W SG +EKFYFD CL+ NAGE++++EYG +
Sbjct: 363 YVIGYTSSSIIIADTESQRFSELEWQ-SGGHEKFYFDFNNCCLIINAGEVTVVEYGVDGS 421
Query: 242 LTCVRIPTDS 251
L VR S
Sbjct: 422 LGWVRTELTS 431
>sp|Q66HB3|IFT80_RAT Intraflagellar transport protein 80 homolog OS=Rattus norvegicus
GN=Ift80 PE=2 SV=1
Length = 777
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 20 ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAW 79
IL+AG D +++S GRV + PH E T +P G+ VGS+ ++L
Sbjct: 203 ILSAGEDCKYKVWDSYGRV---LYGSQPH--EHPITSVAWAPDGELFAVGSFHTLRLC-- 255
Query: 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG 135
K+ W K PN +I ++W DG++IA G V V +R WK
Sbjct: 256 --DKTGWSYALEK--PNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKN 307
>sp|Q8K057|IFT80_MOUSE Intraflagellar transport protein 80 homolog OS=Mus musculus
GN=Ift80 PE=2 SV=1
Length = 777
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 20 ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAW 79
IL+AG D +++S GRV + PH E T +P G+ VGS+ ++L
Sbjct: 203 ILSAGEDCKYKVWDSYGRV---LYGSQPH--EHPITSVAWAPDGELFAVGSFHTLRLC-- 255
Query: 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG 135
K+ W K PN +I ++W DG++IA G V V +R WK
Sbjct: 256 --DKTGWSYALEK--PNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKN 307
>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport protein 80 homolog OS=Homo sapiens
GN=IFT80 PE=1 SV=3
Length = 777
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 20 ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAW 79
IL+AG D +++S GR +++ + PH E T +P G+ VGS+ ++L
Sbjct: 203 ILSAGEDCKYKVWDSYGR--PLYN-SQPH--EHPITSVAWAPDGELFAVGSFHTLRLC-- 255
Query: 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
K+ W K PN +I ++W DG++IA G CG+
Sbjct: 256 --DKTGWSYALEK--PNTGSIFNIAWSIDGTQIA--GACGN 290
>sp|Q960N3|CORT_DROME Protein cortex OS=Drosophila melanogaster GN=cort PE=1 SV=2
Length = 483
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 7 PVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV 66
PV + W +G ++A S + V ++ + +F +P T SP G+ +
Sbjct: 160 PVDYNMMDWSSGGMVAMSSGQDVMLWRNLDESTMVFSVESP-------TSLKYSPDGKHL 212
Query: 67 VVGSYDNIKLFAWSPSKSVWE-EQPNKTI--------PNLYTISALSWKRDGSRIACGGL 117
+G D P +WE P + + ++ IS + W DG + CG
Sbjct: 213 AIGCMDRN-----YPVLDLWEVRSPTEFLVSYRKLFFKSMGYISCIEWSHDGKEVICGTQ 267
Query: 118 CGSV 121
CG +
Sbjct: 268 CGVI 271
>sp|Q4IBR4|HIR1_GIBZE Protein HIR1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=HIR1 PE=3 SV=1
Length = 1046
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 28/205 (13%)
Query: 34 SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKT 93
SD R +IF +T+P A +D + F + S P K+
Sbjct: 190 SDDRTIKIFRFTSP-----------------APNATQHDMVNNFVLETTIS----SPFKS 228
Query: 94 IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI-YVSPSQV-LVKP 151
P SW DG+ IA ++++RT W + +I + +P++V + P
Sbjct: 229 SPLTTYFRRCSWSPDGNHIAAANAVNGPVSSVAIIERTRWDSEINLIGHEAPTEVCMFSP 288
Query: 152 LSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDT----LLLGDLHRNLLSEVLW- 206
+ + + +T +A G D+ L +T ++L DL +S++ W
Sbjct: 289 RLFHTSKPDPSVDDKSPSLVTVIASAGQDKTLSIWNTNTSRPVVILQDLAGKSVSDLAWT 348
Query: 207 PDSGRNEKFYFDNVTVCLVFNAGEL 231
PD D V F+ GEL
Sbjct: 349 PDGQTLFASSLDGSIVVAKFSEGEL 373
>sp|Q7RZI0|HIR1_NEUCR Protein hir-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=hir-1 PE=3 SV=2
Length = 1035
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 41/213 (19%)
Query: 34 SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKT 93
SD R +IF YTAP A +D + F S SV P K
Sbjct: 192 SDDRTIKIFRYTAP-----------------APNATQHDMVNNFILETSISV----PFKH 230
Query: 94 IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI-YVSPSQVLV--- 149
P SW DG+ IA ++++RT W + +I + +P++V +
Sbjct: 231 SPLTTYFRRCSWSPDGNHIAAANAVNGPVSSIAIIERTGWDSEINLIGHEAPTEVCMFSP 290
Query: 150 ------KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDT----LLLGDLHRN 199
KP S G +T +A G D+ L +T L++ D+
Sbjct: 291 RLFYTQKP-DENSNANGAASPGL----VTVIASAGQDKTLTIWNTNTSRPVLIVQDIASK 345
Query: 200 LLSEVLW-PDSGRNEKFYFDNVTVCLVFNAGEL 231
+S++ W PD D + F GEL
Sbjct: 346 SVSDLAWTPDGQTVFAASLDGGVIAAQFETGEL 378
>sp|A4REK3|SEC13_MAGO7 Protein transport protein SEC13 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=SEC13 PE=3 SV=3
Length = 289
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 25 SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS 84
SDR + I+E +G HR+ + H + + VA + P ++ S + K+F W
Sbjct: 19 SDRTIKIFEVEGETHRLTETLKGH-EGAVWCVAWAHPKYGNILASSGYDGKVFIWREQGG 77
Query: 85 VWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFE 125
W++ + + +++ +SW G +AC G V + E
Sbjct: 78 AWQKIFDFALHKA-SVNIVSWSPHESGCLLACASSDGHVSVLE 119
>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans
GN=tag-125 PE=4 SV=1
Length = 376
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 21 LAAGSDRIVTIYESDGRVHRIFDYTAPHYKE-----REFTVACS-SPSGQAVVVGSYDNI 74
+A SD + SD + +IF+ + + C+ +P VV GS+D
Sbjct: 135 IAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDE- 193
Query: 75 KLFAWSPSKSVWEEQPNKTIPNLYT----ISALSWKRDGSRIACGGLCGSVELFESVLKR 130
S +W+ + I L +SA+S+ RDGS IA G G V ++++ +
Sbjct: 194 -------SVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQ 246
Query: 131 TI 132
I
Sbjct: 247 CI 248
>sp|Q7K0L4|WDR26_DROME WD repeat-containing protein 26 homolog OS=Drosophila melanogaster
GN=CG7611 PE=1 SV=1
Length = 630
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 16 PAGYILAAGS-DRIVTIYESDG-----RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 69
P G LA GS D V I++ D + R+ D A + + SP + ++VG
Sbjct: 324 PDGLKLATGSKDSTVIIWDVDPYKLTLKHRRVLDGQA----QLSVSFVSWSPDSKLILVG 379
Query: 70 -SYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 128
+ D+ +L+ W+ + ++++ + A S RDG+R CGG G +L+ L
Sbjct: 380 GTEDSHELYIWNVDDGKLVVKFSQSLEDSLACGAFS--RDGARFVCGGQKG--QLYLCDL 435
Query: 129 KRTI---WKG 135
TI W+G
Sbjct: 436 NGTIVDSWEG 445
>sp|P38328|ARPC1_YEAST Actin-related protein 2/3 complex subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC40 PE=1
SV=1
Length = 384
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 52 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR 111
R T +P+G VGS I + ++ W + P TI+ LSW +G
Sbjct: 108 RAATSVTWAPNGYKFAVGSSARIIAVCYYEHENNWWVSKHIKKPIKSTINCLSWHANGVL 167
Query: 112 IACGGLCGSVELFESVLK 129
+A GG G + +F +K
Sbjct: 168 LAAGGTDGFMRVFSGFIK 185
>sp|A8IZG4|CIAO1_CHLRE Probable cytosolic iron-sulfur protein assembly protein CIAO1
homolog OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_130093 PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 60 SPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG 119
SP+G+A+ S+D + W S VWE Q + + + ++W DG IA G
Sbjct: 74 SPTGRALATASFD-ATVAVWELSSGVWE-QVAELEGHENEVKCVAWNPDGRLIATCGRDR 131
Query: 120 SVELFESVLKRTIWKGKFEMIYV 142
SV ++ES+ R +FE + V
Sbjct: 132 SVWIWESMPGR-----EFECVDV 149
>sp|Q98PH6|SYT_MYCPU Threonine--tRNA ligase OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=thrS PE=3 SV=1
Length = 589
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 94 IPNLYTISALSWKRDGSR----IACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV 149
+P + IS ++ DGS+ + GL G+ E F S+L KG F ++SPSQV+V
Sbjct: 442 LPRKFNISYIA--PDGSKQTPLMIHRGLIGTYERFVSILLEQT-KGNFPF-WLSPSQVIV 497
Query: 150 KPLSGESKGRGVILKSQYGYEI 171
P++ E K +Y +EI
Sbjct: 498 LPIAKEFK--------EYAFEI 511
>sp|Q2UBU2|HIR1_ASPOR Protein HIR1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=HIR1 PE=3 SV=1
Length = 1058
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 43/214 (20%)
Query: 34 SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKT 93
SD R RIF +T+P +P+ A +D + F + S P
Sbjct: 193 SDDRTVRIFRFTSP------------APNSTA-----HDQMNNFVLEQTISA----PFAN 231
Query: 94 IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI---------YVSP 144
P SW DG IA +++ R W G +I SP
Sbjct: 232 SPLTAYFRRCSWSPDGMHIAAANAVNGPVSSVAIINRGSWDGDINLIGHEAPVEVCAFSP 291
Query: 145 SQVLVKPLSGESKGRGVILKSQYGYE--ITDVAIMGNDRYL---VARTPDTLLLG-DLHR 198
+P+ ++ + +Q+G + +T +A G D+ L + P +++ +L
Sbjct: 292 RLYASQPVDKQA------MDNQHGAQNLVTVIACAGGDKSLSIWITSNPRPIVVAQELAA 345
Query: 199 NLLSEVLW-PDSGRNEKFYFDNVTVCLVFNAGEL 231
LS++ W PD D + + F G+L
Sbjct: 346 KSLSDLAWSPDGKCLYATALDGTILAVRFEDGDL 379
>sp|Q4WTC4|HIR1_ASPFU Protein hir1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=hir1 PE=3 SV=1
Length = 1043
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 31/208 (14%)
Query: 34 SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKT 93
SD R RIF +T+P SP+ A +D + F + S P +
Sbjct: 174 SDDRTVRIFRFTSP------------SPNSTA-----HDQMNNFVLEHTISA----PFQN 212
Query: 94 IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI-YVSPSQVLV--- 149
P SW DG IA +++ R W G +I + +P +V
Sbjct: 213 SPLTAYFRRCSWSPDGMHIAAANAVNGPVSSVAIINRGSWDGDINLIGHEAPVEVCAFSP 272
Query: 150 KPLSGESKGRGVILKSQYGYE-ITDVAIMGNDRYL---VARTPDTLLLG-DLHRNLLSEV 204
+ S + + + + + +T +A G D+ L + P +++ ++ +S++
Sbjct: 273 RLYSSQPVSKSAVDNQNHAMQNVTVIACAGGDKSLSIWITSNPRPIVVAQEMAAKSISDL 332
Query: 205 LW-PDSGRNEKFYFDNVTVCLVFNAGEL 231
W PD D + + F GEL
Sbjct: 333 AWSPDGKCLFATALDGTILAVRFEDGEL 360
>sp|Q74ZN0|HIR1_ASHGO Protein HIR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=HIR1 PE=3 SV=2
Length = 825
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 98 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK 157
Y I + DG R+A GGL G + ++ SV ++ K ++ + + + L KPL+ S+
Sbjct: 18 YEIYTVDVSSDGQRVATGGLDGKIRIW-SVADILVF-AKPKVSWPAREEQLRKPLANMSR 75
Query: 158 GRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLL 193
G +T + +++YL + + D +LL
Sbjct: 76 HTG---------SVTALKFSPDNKYLASGSDDKILL 102
>sp|Q54PE0|PWP2_DICDI Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum
GN=pwp2 PE=3 SV=1
Length = 922
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 16 PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIK 75
P+G I+AAGS IY R R+ D + H SP V ++D I
Sbjct: 455 PSGEIIAAGSLDSFEIYVWSVRTGRLTDILSGH----------QSP----VCELAFDPIN 500
Query: 76 LF----AWSPSKSVW----EEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 126
F +W S +W + + ++I + + ++ +DG + L G+++++E+
Sbjct: 501 PFLASASWDKSCKIWNIFEDREIRESIQHTSDVLTCAYSQDGKKFIVSCLDGTIQIYET 559
>sp|Q2GSJ9|HIR1_CHAGB Protein HIR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) GN=HIR1 PE=3 SV=1
Length = 1080
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 90 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMI-YVSPSQVL 148
P K+ P SW DG+ IA ++++R+ W + +I + P++V
Sbjct: 227 PFKSSPLTTYFRRCSWSPDGNHIAAANAVNGPVSSVAIIERSRWDSEINLIGHEGPTEVC 286
Query: 149 V---KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDT----LLLGDLHRNLL 201
+ + + K G +T +A G D+ L +T ++L D+ +
Sbjct: 287 MFSPRLFHTQKPSDNATDKGSPGL-VTVIASAGQDKTLSIWNTNTSRPVVILQDVASKSM 345
Query: 202 SEVLW-PDSGRNEKFYFDNVTVCLVFNAGEL 231
S++ W PD D + + F GEL
Sbjct: 346 SDLAWTPDGQTLFASSLDGTILAVKFEMGEL 376
>sp|P36037|DOA1_YEAST Protein DOA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DOA1 PE=1 SV=1
Length = 715
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 38/155 (24%)
Query: 16 PAGYILAAGSDRIVTIY-ESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 73
P G I++ G DR V I+ + +G + ++ A ++V C S ++VGS DN
Sbjct: 230 PNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI----WSVDCMSNGD--IIVGSSDNL 283
Query: 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW 133
+++F S KS W + I+ LS + + S I+ ++E ES L
Sbjct: 284 VRIF--SQEKSRWASEDE--------INELSTQVEKSTIS----SKTIEFDESKL----- 324
Query: 134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG 168
SP ++L P G +G+ V++KS G
Sbjct: 325 ---------SPYEILQSP--GRKEGQIVVVKSPQG 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,654,048
Number of Sequences: 539616
Number of extensions: 4166433
Number of successful extensions: 8676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 8632
Number of HSP's gapped (non-prelim): 62
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)