Query psy12788
Match_columns 254
No_of_seqs 255 out of 2092
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:39:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 1.1E-28 3.8E-33 216.9 26.8 191 5-204 80-295 (344)
2 2ynn_A Coatomer subunit beta'; 100.0 1.1E-27 3.8E-32 205.9 28.6 214 2-228 8-257 (304)
3 2ynn_A Coatomer subunit beta'; 100.0 3E-27 1E-31 203.3 30.3 188 3-202 51-263 (304)
4 3ow8_A WD repeat-containing pr 100.0 2E-27 6.8E-32 206.5 28.4 189 3-204 76-285 (321)
5 1vyh_C Platelet-activating fac 100.0 1.2E-27 4.2E-32 214.4 27.7 213 2-228 103-367 (410)
6 3frx_A Guanine nucleotide-bind 100.0 1E-26 3.4E-31 201.5 30.3 187 2-201 12-230 (319)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.2E-27 3.1E-31 203.8 29.2 187 2-196 10-223 (345)
8 1vyh_C Platelet-activating fac 100.0 5.5E-27 1.9E-31 210.1 28.3 211 2-235 145-398 (410)
9 1got_B GT-beta; complex (GTP-b 100.0 4.9E-26 1.7E-30 198.6 33.0 189 2-200 50-259 (340)
10 2pbi_B Guanine nucleotide-bind 100.0 3E-26 1E-30 201.5 31.2 191 2-200 59-273 (354)
11 3ow8_A WD repeat-containing pr 100.0 8.9E-27 3E-31 202.4 27.3 215 2-228 27-277 (321)
12 2xzm_R RACK1; ribosome, transl 100.0 2.7E-26 9.1E-31 200.4 28.5 227 3-240 72-332 (343)
13 4ery_A WD repeat-containing pr 100.0 1.8E-25 6.1E-30 191.8 31.8 188 3-202 19-227 (312)
14 2xzm_R RACK1; ribosome, transl 100.0 1.6E-25 5.4E-30 195.5 31.3 182 2-197 16-243 (343)
15 2pm7_B Protein transport prote 100.0 7.5E-26 2.6E-30 193.9 28.3 188 3-199 5-239 (297)
16 3iz6_a 40S ribosomal protein R 100.0 5.5E-27 1.9E-31 207.8 21.7 194 2-202 61-284 (380)
17 1nr0_A Actin interacting prote 100.0 7.4E-26 2.5E-30 212.6 30.2 193 2-202 142-359 (611)
18 4g56_B MGC81050 protein; prote 100.0 9E-27 3.1E-31 205.2 22.4 192 4-204 91-307 (357)
19 2hes_X YDR267CP; beta-propelle 100.0 7E-26 2.4E-30 197.0 27.4 190 5-200 56-282 (330)
20 3frx_A Guanine nucleotide-bind 99.9 2.3E-25 7.8E-30 192.9 28.1 223 2-240 60-309 (319)
21 3bg1_A Protein SEC13 homolog; 99.9 9.4E-26 3.2E-30 195.1 24.1 186 3-198 9-247 (316)
22 4gqb_B Methylosome protein 50; 99.9 1.1E-25 3.9E-30 197.7 24.9 186 4-201 124-334 (344)
23 4aow_A Guanine nucleotide-bind 99.9 1.5E-24 5.3E-29 186.5 31.4 187 2-201 33-249 (340)
24 2hes_X YDR267CP; beta-propelle 99.9 8.1E-25 2.8E-29 190.3 29.7 193 2-199 9-231 (330)
25 1got_B GT-beta; complex (GTP-b 99.9 1.5E-25 5.2E-30 195.5 24.6 180 3-195 139-340 (340)
26 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.4E-24 4.9E-29 189.8 29.9 189 4-199 58-284 (345)
27 3dm0_A Maltose-binding peripla 99.9 3.2E-25 1.1E-29 210.7 27.0 190 2-202 425-636 (694)
28 3f3f_A Nucleoporin SEH1; struc 99.9 2.9E-24 1E-28 183.7 29.5 188 3-199 7-250 (351)
29 3dm0_A Maltose-binding peripla 99.9 1.7E-24 5.7E-29 205.9 30.7 187 2-201 377-595 (694)
30 1erj_A Transcriptional repress 99.9 2.8E-24 9.5E-29 191.2 30.0 188 4-199 61-288 (393)
31 3zwl_B Eukaryotic translation 99.9 1.7E-23 5.7E-28 181.2 33.7 187 2-201 27-252 (369)
32 2ymu_A WD-40 repeat protein; u 99.9 3.6E-24 1.2E-28 197.8 31.1 182 2-198 11-211 (577)
33 2pbi_B Guanine nucleotide-bind 99.9 7.4E-25 2.5E-29 192.6 25.2 180 3-195 150-354 (354)
34 4ery_A WD repeat-containing pr 99.9 5E-24 1.7E-28 182.7 27.5 187 3-202 61-272 (312)
35 3iz6_a 40S ribosomal protein R 99.9 1.1E-24 3.8E-29 192.9 24.1 192 3-200 153-377 (380)
36 3mmy_A MRNA export factor; mRN 99.9 5.3E-24 1.8E-28 184.4 27.2 215 3-237 35-335 (368)
37 3k26_A Polycomb protein EED; W 99.9 2.6E-24 8.9E-29 186.4 24.5 221 6-239 68-357 (366)
38 1nr0_A Actin interacting prote 99.9 8.4E-24 2.9E-28 198.6 29.8 187 3-201 55-273 (611)
39 1erj_A Transcriptional repress 99.9 2.3E-23 7.8E-28 185.3 30.3 184 8-202 124-345 (393)
40 3vl1_A 26S proteasome regulato 99.9 9E-24 3.1E-28 187.5 27.4 189 3-199 135-366 (420)
41 3vl1_A 26S proteasome regulato 99.9 1E-23 3.4E-28 187.2 27.4 178 11-200 101-324 (420)
42 1k8k_C P40, ARP2/3 complex 41 99.9 2.2E-23 7.5E-28 181.5 28.9 190 2-198 47-274 (372)
43 4g56_B MGC81050 protein; prote 99.9 4E-24 1.4E-28 188.2 23.9 183 4-198 136-343 (357)
44 3jrp_A Fusion protein of prote 99.9 1.4E-23 4.8E-28 182.6 26.6 190 2-199 6-241 (379)
45 4e54_B DNA damage-binding prot 99.9 2.3E-24 7.8E-29 194.1 22.1 193 3-201 115-330 (435)
46 2ymu_A WD-40 repeat protein; u 99.9 1.3E-23 4.3E-28 194.1 27.5 208 3-235 340-567 (577)
47 3v7d_B Cell division control p 99.9 1.2E-22 4E-27 183.2 32.7 187 2-202 116-345 (464)
48 4h5i_A Guanine nucleotide-exch 99.9 7E-24 2.4E-28 187.3 22.9 182 6-199 132-344 (365)
49 1k8k_C P40, ARP2/3 complex 41 99.9 6.8E-23 2.3E-27 178.3 28.5 188 4-202 5-237 (372)
50 2aq5_A Coronin-1A; WD40 repeat 99.9 3.7E-23 1.3E-27 183.7 25.9 188 2-200 76-301 (402)
51 3ei3_B DNA damage-binding prot 99.9 1.1E-22 3.7E-27 179.0 27.7 193 2-201 68-285 (383)
52 2pm7_B Protein transport prote 99.9 5.4E-23 1.9E-27 176.0 24.9 189 2-198 48-285 (297)
53 4ggc_A P55CDC, cell division c 99.9 1.7E-22 5.8E-27 172.1 27.8 186 10-202 28-277 (318)
54 1gxr_A ESG1, transducin-like e 99.9 3E-22 1E-26 171.5 29.3 184 5-202 95-300 (337)
55 1gxr_A ESG1, transducin-like e 99.9 6.5E-22 2.2E-26 169.4 30.9 214 3-228 47-294 (337)
56 3mkq_A Coatomer beta'-subunit; 99.9 8.4E-23 2.9E-27 195.8 27.9 187 2-200 8-219 (814)
57 1r5m_A SIR4-interacting protei 99.9 3.5E-22 1.2E-26 176.1 29.4 188 5-200 106-363 (425)
58 3dwl_C Actin-related protein 2 99.9 3.6E-24 1.2E-28 187.7 16.5 189 6-201 10-239 (377)
59 1sq9_A Antiviral protein SKI8; 99.9 1.6E-22 5.4E-27 178.0 26.6 192 2-202 11-271 (397)
60 3i2n_A WD repeat-containing pr 99.9 4E-23 1.4E-27 178.6 22.3 192 4-200 62-293 (357)
61 4gq1_A NUP37; propeller, trans 99.9 1.9E-23 6.3E-28 186.1 20.0 188 2-197 131-388 (393)
62 3dw8_B Serine/threonine-protei 99.9 2E-22 6.9E-27 180.0 26.7 217 5-228 26-371 (447)
63 3dwl_C Actin-related protein 2 99.9 2.3E-23 8E-28 182.5 19.7 191 2-198 50-281 (377)
64 3ei3_B DNA damage-binding prot 99.9 7E-23 2.4E-27 180.2 22.7 185 5-198 161-382 (383)
65 3bg1_A Protein SEC13 homolog; 99.9 7.1E-23 2.4E-27 176.9 22.0 187 3-197 53-292 (316)
66 4e54_B DNA damage-binding prot 99.9 1.3E-23 4.5E-28 189.1 17.4 186 7-201 209-433 (435)
67 3odt_A Protein DOA1; ubiquitin 99.9 2.3E-21 7.8E-26 164.5 29.7 187 2-201 13-217 (313)
68 3v7d_B Cell division control p 99.9 2.5E-21 8.4E-26 174.5 31.1 187 3-200 158-383 (464)
69 3mkq_A Coatomer beta'-subunit; 99.9 1.2E-21 4.2E-26 187.7 29.8 188 2-201 50-262 (814)
70 1yfq_A Cell cycle arrest prote 99.9 1.5E-21 5E-26 168.2 27.0 183 4-199 8-226 (342)
71 4gq1_A NUP37; propeller, trans 99.9 1.1E-22 3.7E-27 181.1 20.1 106 19-130 103-220 (393)
72 2pm9_A Protein WEB1, protein t 99.9 2.4E-22 8.1E-27 177.7 21.9 189 4-201 64-297 (416)
73 4aez_A CDC20, WD repeat-contai 99.9 3.3E-21 1.1E-25 171.3 29.0 182 5-201 132-339 (401)
74 3i2n_A WD repeat-containing pr 99.9 7.3E-22 2.5E-26 170.6 24.1 185 4-200 15-245 (357)
75 3odt_A Protein DOA1; ubiquitin 99.9 1E-21 3.5E-26 166.7 24.5 184 2-201 99-299 (313)
76 4h5i_A Guanine nucleotide-exch 99.9 3.2E-21 1.1E-25 170.2 28.3 191 3-203 69-305 (365)
77 3jrp_A Fusion protein of prote 99.9 1.1E-21 3.9E-26 170.5 24.5 190 2-199 50-288 (379)
78 1p22_A F-BOX/WD-repeat protein 99.9 2.6E-21 8.9E-26 173.8 27.3 183 3-200 169-367 (435)
79 2oaj_A Protein SNI1; WD40 repe 99.9 6.8E-22 2.3E-26 193.8 25.3 184 4-203 14-247 (902)
80 3jro_A Fusion protein of prote 99.9 7.3E-22 2.5E-26 189.9 24.7 190 2-199 4-239 (753)
81 2oaj_A Protein SNI1; WD40 repe 99.9 8.8E-22 3E-26 193.0 24.8 241 3-249 431-794 (902)
82 2xyi_A Probable histone-bindin 99.9 1.5E-21 5E-26 175.5 24.1 189 3-198 124-353 (430)
83 3dw8_B Serine/threonine-protei 99.9 4.9E-22 1.7E-26 177.4 20.8 192 8-205 94-380 (447)
84 3zwl_B Eukaryotic translation 99.9 2.3E-20 7.8E-25 161.5 30.7 190 2-201 69-307 (369)
85 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-20 4E-25 170.3 29.5 189 5-199 100-342 (450)
86 4aez_A CDC20, WD repeat-contai 99.9 2.8E-21 9.5E-26 171.8 24.7 187 3-202 172-384 (401)
87 1r5m_A SIR4-interacting protei 99.9 2.4E-20 8.1E-25 164.4 30.5 187 5-201 43-281 (425)
88 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.4E-20 1.5E-24 165.9 32.6 226 2-245 154-398 (445)
89 2j04_B YDR362CP, TAU91; beta p 99.9 2.6E-22 8.8E-27 186.0 18.4 188 3-199 203-429 (524)
90 2j04_B YDR362CP, TAU91; beta p 99.9 2.3E-22 7.8E-27 186.3 17.1 204 20-228 176-426 (524)
91 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-21 3.9E-26 170.8 20.3 158 8-201 77-247 (343)
92 1p22_A F-BOX/WD-repeat protein 99.9 3.2E-20 1.1E-24 166.6 30.3 214 5-237 131-364 (435)
93 2ovr_B FBW7, F-BOX/WD repeat p 99.9 6.5E-20 2.2E-24 164.8 31.8 226 3-247 114-357 (445)
94 4ggc_A P55CDC, cell division c 99.9 7.9E-21 2.7E-25 161.7 24.5 191 3-198 63-315 (318)
95 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-20 5.1E-25 188.4 30.2 212 2-227 652-910 (1249)
96 4aow_A Guanine nucleotide-bind 99.9 3.3E-20 1.1E-24 159.4 28.2 224 3-240 82-329 (340)
97 3k26_A Polycomb protein EED; W 99.9 8.9E-22 3E-26 170.4 18.4 191 4-200 15-262 (366)
98 3f3f_A Nucleoporin SEH1; struc 99.9 3.9E-21 1.3E-25 164.1 22.1 190 3-200 53-339 (351)
99 4a11_B DNA excision repair pro 99.9 1.4E-20 4.8E-25 165.2 26.2 190 3-201 39-279 (408)
100 3gre_A Serine/threonine-protei 99.9 1.1E-20 3.8E-25 168.9 25.9 192 5-203 109-364 (437)
101 3gre_A Serine/threonine-protei 99.9 1.9E-21 6.4E-26 173.9 20.5 192 4-202 60-296 (437)
102 4a11_B DNA excision repair pro 99.9 1.3E-20 4.5E-25 165.3 24.9 189 5-201 139-368 (408)
103 1sq9_A Antiviral protein SKI8; 99.9 1.8E-20 6.1E-25 164.8 25.5 191 3-202 58-326 (397)
104 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-20 5.3E-25 188.3 28.1 187 3-201 611-831 (1249)
105 3lrv_A PRE-mRNA-splicing facto 99.9 6E-21 2E-25 166.2 21.4 161 5-199 123-293 (343)
106 4gga_A P55CDC, cell division c 99.9 7.4E-20 2.5E-24 163.7 28.9 184 3-201 143-356 (420)
107 4gga_A P55CDC, cell division c 99.9 1.8E-20 6.2E-25 167.7 24.7 190 2-200 184-397 (420)
108 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-20 4.1E-25 167.4 22.8 189 8-200 35-256 (402)
109 2w18_A PALB2, fancn, partner a 99.9 2.5E-21 8.6E-26 169.2 17.5 160 26-196 156-355 (356)
110 1pgu_A Actin interacting prote 99.9 8.5E-20 2.9E-24 168.9 28.9 190 4-203 15-243 (615)
111 2pm9_A Protein WEB1, protein t 99.9 2E-21 6.7E-26 171.7 16.8 192 3-199 161-415 (416)
112 1pgu_A Actin interacting prote 99.9 1.9E-20 6.4E-25 173.3 24.1 189 2-206 155-380 (615)
113 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.4E-19 4.8E-24 163.3 27.9 189 7-201 4-274 (450)
114 1yfq_A Cell cycle arrest prote 99.9 1.7E-19 5.7E-24 155.3 25.1 190 3-204 52-288 (342)
115 2j04_A TAU60, YPL007P, hypothe 99.9 6.7E-20 2.3E-24 169.5 23.5 224 5-238 83-351 (588)
116 2xyi_A Probable histone-bindin 99.9 4.1E-20 1.4E-24 166.1 21.3 195 3-201 177-413 (430)
117 2j04_A TAU60, YPL007P, hypothe 99.8 4.7E-20 1.6E-24 170.5 19.9 185 7-205 15-261 (588)
118 3jro_A Fusion protein of prote 99.8 4.7E-20 1.6E-24 177.3 18.9 190 2-199 48-286 (753)
119 3bws_A Protein LP49; two-domai 99.8 5.1E-18 1.7E-22 151.1 25.5 185 3-202 165-394 (433)
120 1l0q_A Surface layer protein; 99.8 1.6E-17 5.6E-22 145.9 28.1 206 6-228 30-273 (391)
121 3mmy_A MRNA export factor; mRN 99.8 7.2E-18 2.5E-22 145.6 19.6 184 3-195 82-343 (368)
122 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-18 3.4E-23 158.1 14.6 165 5-199 90-279 (434)
123 1l0q_A Surface layer protein; 99.8 8.2E-17 2.8E-21 141.4 26.1 167 19-201 4-192 (391)
124 3vu4_A KMHSV2; beta-propeller 99.8 1.2E-18 4.2E-23 152.9 14.2 163 18-199 148-337 (355)
125 3vu4_A KMHSV2; beta-propeller 99.8 1.2E-16 4.2E-21 140.0 25.4 182 3-200 15-273 (355)
126 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.6E-17 5.3E-22 149.1 19.9 169 18-201 144-347 (415)
127 3bws_A Protein LP49; two-domai 99.8 8.2E-17 2.8E-21 143.2 24.4 185 7-201 122-337 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.8E-16 9.7E-21 140.9 24.4 186 2-204 173-393 (415)
129 2w18_A PALB2, fancn, partner a 99.7 6.7E-16 2.3E-20 134.9 23.7 186 10-204 42-320 (356)
130 2ojh_A Uncharacterized protein 99.7 1.2E-15 3.9E-20 127.4 19.5 186 3-201 37-261 (297)
131 2oit_A Nucleoporin 214KDA; NH2 99.7 8E-16 2.7E-20 139.0 19.4 157 8-197 37-222 (434)
132 1nir_A Nitrite reductase; hemo 99.7 1.3E-14 4.3E-19 134.8 27.2 222 15-248 145-419 (543)
133 1pby_B Quinohemoprotein amine 99.7 9.7E-14 3.3E-18 118.4 25.5 226 9-248 35-320 (337)
134 1ri6_A Putative isomerase YBHE 99.7 2.3E-13 7.8E-18 116.4 27.8 171 20-198 8-209 (343)
135 1ri6_A Putative isomerase YBHE 99.6 3.9E-13 1.3E-17 115.0 28.1 184 5-197 35-261 (343)
136 1nir_A Nitrite reductase; hemo 99.6 1.2E-13 4.2E-18 128.2 26.7 193 6-202 220-462 (543)
137 2ecf_A Dipeptidyl peptidase IV 99.6 2.6E-14 9E-19 135.9 21.4 115 7-129 36-182 (741)
138 3hfq_A Uncharacterized protein 99.6 4.6E-13 1.6E-17 115.8 25.6 237 5-249 37-342 (347)
139 3u4y_A Uncharacterized protein 99.6 2.3E-13 8E-18 116.5 22.4 181 7-201 40-255 (331)
140 2ojh_A Uncharacterized protein 99.6 4.2E-13 1.4E-17 111.7 21.2 164 22-197 17-203 (297)
141 3u4y_A Uncharacterized protein 99.6 1.4E-12 4.9E-17 111.6 24.6 173 19-201 12-210 (331)
142 3hfq_A Uncharacterized protein 99.6 1.9E-12 6.4E-17 112.0 25.5 199 5-204 83-325 (347)
143 3vgz_A Uncharacterized protein 99.6 5.3E-12 1.8E-16 108.6 27.9 182 8-202 41-266 (353)
144 1xfd_A DIP, dipeptidyl aminope 99.6 3.2E-14 1.1E-18 134.9 14.6 112 9-129 18-144 (723)
145 3vgz_A Uncharacterized protein 99.6 2.9E-12 9.8E-17 110.2 25.1 209 7-237 88-333 (353)
146 2z3z_A Dipeptidyl aminopeptida 99.6 1.2E-12 4.1E-17 123.9 24.7 178 8-197 82-341 (706)
147 3scy_A Hypothetical bacterial 99.5 4.5E-12 1.5E-16 110.3 26.0 197 6-204 98-345 (361)
148 1jmx_B Amine dehydrogenase; ox 99.5 2.9E-12 9.8E-17 109.9 23.9 226 9-248 44-335 (349)
149 2z3z_A Dipeptidyl aminopeptida 99.5 4.6E-13 1.6E-17 126.8 20.0 186 3-200 116-393 (706)
150 1xfd_A DIP, dipeptidyl aminope 99.5 5E-13 1.7E-17 126.6 19.6 182 9-200 62-347 (723)
151 2ecf_A Dipeptidyl peptidase IV 99.5 5.2E-13 1.8E-17 126.9 19.0 175 10-197 111-366 (741)
152 1k32_A Tricorn protease; prote 99.5 8.2E-13 2.8E-17 131.0 19.4 187 3-202 374-604 (1045)
153 3o4h_A Acylamino-acid-releasin 99.5 4.3E-12 1.5E-16 117.7 22.8 180 7-202 21-231 (582)
154 1z68_A Fibroblast activation p 99.5 3.7E-13 1.3E-17 127.7 12.6 108 11-130 19-141 (719)
155 1pby_B Quinohemoprotein amine 99.5 4.5E-12 1.6E-16 108.0 18.1 129 19-155 3-164 (337)
156 1k32_A Tricorn protease; prote 99.4 3.1E-12 1.1E-16 126.8 17.3 153 6-201 294-464 (1045)
157 1jmx_B Amine dehydrogenase; ox 99.4 1.3E-11 4.4E-16 105.8 18.7 108 13-128 5-134 (349)
158 4a5s_A Dipeptidyl peptidase 4 99.4 1.7E-11 5.9E-16 117.3 20.4 180 11-200 65-296 (740)
159 4a5s_A Dipeptidyl peptidase 4 99.4 2.4E-11 8.1E-16 116.3 18.8 109 8-130 17-143 (740)
160 1z68_A Fibroblast activation p 99.4 2.3E-12 7.8E-17 122.3 11.1 180 9-200 61-293 (719)
161 1jof_A Carboxy-CIS,CIS-muconat 99.4 8.7E-11 3E-15 102.8 20.1 115 8-127 40-175 (365)
162 3o4h_A Acylamino-acid-releasin 99.3 5E-11 1.7E-15 110.5 18.6 180 2-202 58-278 (582)
163 1jof_A Carboxy-CIS,CIS-muconat 99.3 2.9E-10 1E-14 99.4 22.1 169 6-201 143-344 (365)
164 1q7f_A NHL, brain tumor CG1071 99.3 1.8E-09 6.1E-14 90.7 24.7 182 6-198 75-280 (286)
165 3scy_A Hypothetical bacterial 99.3 1.5E-09 5.1E-14 94.2 24.7 117 6-127 48-185 (361)
166 1q7f_A NHL, brain tumor CG1071 99.3 9.7E-09 3.3E-13 86.1 28.3 191 5-205 27-245 (286)
167 3fvz_A Peptidyl-glycine alpha- 99.3 2.3E-08 7.8E-13 86.2 30.1 219 8-240 24-314 (329)
168 3azo_A Aminopeptidase; POP fam 99.2 5.2E-10 1.8E-14 105.0 20.0 192 3-201 19-277 (662)
169 3no2_A Uncharacterized protein 99.2 1.2E-09 4.3E-14 92.5 20.5 168 18-202 6-199 (276)
170 1qks_A Cytochrome CD1 nitrite 99.2 1E-08 3.5E-13 95.5 27.6 216 19-248 169-438 (567)
171 3azo_A Aminopeptidase; POP fam 99.2 2.5E-10 8.7E-15 107.1 16.5 189 6-204 128-375 (662)
172 3e5z_A Putative gluconolactona 99.2 1.4E-08 4.7E-13 85.8 25.0 186 4-201 24-249 (296)
173 3pe7_A Oligogalacturonate lyas 99.2 6.1E-10 2.1E-14 97.2 17.0 188 2-202 25-277 (388)
174 2xdw_A Prolyl endopeptidase; a 99.2 5.7E-09 1.9E-13 99.3 25.0 187 6-200 123-370 (710)
175 2bkl_A Prolyl endopeptidase; m 99.2 2E-09 6.8E-14 102.2 20.8 184 5-196 118-347 (695)
176 3pe7_A Oligogalacturonate lyas 99.2 3.4E-09 1.2E-13 92.4 20.2 186 6-205 79-336 (388)
177 3fvz_A Peptidyl-glycine alpha- 99.1 1.7E-08 5.8E-13 87.0 23.2 186 7-198 90-322 (329)
178 3e5z_A Putative gluconolactona 99.1 4.8E-08 1.6E-12 82.4 22.2 186 5-201 66-289 (296)
179 2oiz_A Aromatic amine dehydrog 99.1 1.5E-08 5.2E-13 88.9 19.6 163 25-200 29-232 (361)
180 2dg1_A DRP35, lactonase; beta 99.0 2E-07 6.7E-12 79.7 25.0 194 3-204 40-269 (333)
181 2gop_A Trilobed protease; beta 99.0 1.6E-07 5.5E-12 80.5 24.2 173 9-204 60-297 (347)
182 1rwi_B Serine/threonine-protei 99.0 1.9E-07 6.6E-12 77.1 23.4 212 9-241 25-257 (270)
183 1yr2_A Prolyl oligopeptidase; 99.0 1.4E-07 4.9E-12 90.1 24.2 183 8-201 163-398 (741)
184 3dsm_A Uncharacterized protein 99.0 5.5E-07 1.9E-11 77.6 25.7 179 9-202 45-257 (328)
185 3c5m_A Oligogalacturonate lyas 98.9 4.5E-08 1.5E-12 85.1 16.4 176 12-204 85-335 (396)
186 1xip_A Nucleoporin NUP159; bet 98.9 4.4E-08 1.5E-12 87.1 16.0 105 4-128 85-191 (388)
187 2oiz_A Aromatic amine dehydrog 98.9 1.4E-06 4.8E-11 76.2 25.5 181 12-202 54-299 (361)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 3E-06 1E-10 71.3 26.7 190 6-201 16-259 (314)
189 2dg1_A DRP35, lactonase; beta 98.9 4.3E-08 1.5E-12 83.8 14.8 154 8-201 6-174 (333)
190 2z2n_A Virginiamycin B lyase; 98.9 6.6E-06 2.2E-10 68.4 27.7 184 5-204 12-218 (299)
191 1rwi_B Serine/threonine-protei 98.9 2.1E-07 7.1E-12 76.9 17.9 181 8-200 67-266 (270)
192 3no2_A Uncharacterized protein 98.8 7.1E-07 2.4E-11 75.4 20.8 119 8-133 37-159 (276)
193 1xip_A Nucleoporin NUP159; bet 98.8 2.8E-07 9.6E-12 81.9 18.8 137 53-201 39-194 (388)
194 1qks_A Cytochrome CD1 nitrite 98.8 4.8E-06 1.6E-10 77.5 27.8 185 8-199 197-478 (567)
195 3g4e_A Regucalcin; six bladed 98.8 2.4E-06 8.2E-11 72.3 23.1 166 6-202 52-233 (297)
196 2gop_A Trilobed protease; beta 98.8 4.4E-07 1.5E-11 77.7 18.7 166 10-201 106-333 (347)
197 2xdw_A Prolyl endopeptidase; a 98.8 1.5E-06 5.1E-11 82.5 23.1 182 10-200 173-416 (710)
198 2z2n_A Virginiamycin B lyase; 98.8 5.2E-05 1.8E-09 62.8 29.7 185 6-205 55-261 (299)
199 3c5m_A Oligogalacturonate lyas 98.7 3E-07 1E-11 79.8 14.9 98 24-129 165-274 (396)
200 2mad_H Methylamine dehydrogena 98.7 2.4E-05 8.4E-10 68.8 26.9 156 28-199 48-244 (373)
201 3hrp_A Uncharacterized protein 98.7 1.3E-05 4.5E-10 71.4 24.1 226 8-241 131-403 (409)
202 3dr2_A Exported gluconolactona 98.6 1.2E-05 4.2E-10 68.1 22.2 166 5-204 83-273 (305)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 1E-05 3.6E-10 67.9 21.6 185 6-199 69-300 (314)
204 3dsm_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 77.3 14.1 153 9-201 132-304 (328)
205 2qc5_A Streptogramin B lactona 98.6 0.00015 5E-09 60.1 28.8 183 6-204 18-223 (300)
206 3iuj_A Prolyl endopeptidase; h 98.6 7.3E-06 2.5E-10 77.8 21.5 190 5-206 126-367 (693)
207 3sjl_D Methylamine dehydrogena 98.6 9.4E-06 3.2E-10 71.9 19.8 162 26-200 58-258 (386)
208 2bkl_A Prolyl endopeptidase; m 98.6 3E-06 1E-10 80.3 17.7 183 11-202 171-401 (695)
209 2hz6_A Endoplasmic reticulum t 98.5 2.5E-08 8.5E-13 87.8 1.7 169 16-201 8-195 (369)
210 2ghs_A AGR_C_1268P; regucalcin 98.5 0.00032 1.1E-08 60.1 26.9 175 10-197 51-259 (326)
211 3dr2_A Exported gluconolactona 98.5 3.8E-05 1.3E-09 65.0 20.6 101 4-114 41-147 (305)
212 3g4e_A Regucalcin; six bladed 98.4 5.1E-05 1.7E-09 64.0 20.8 97 9-116 14-116 (297)
213 1yr2_A Prolyl oligopeptidase; 98.4 1.7E-05 5.7E-10 75.8 19.1 183 11-201 212-444 (741)
214 2mad_H Methylamine dehydrogena 98.4 0.00093 3.2E-08 58.6 28.5 108 12-130 70-197 (373)
215 2qc5_A Streptogramin B lactona 98.4 0.00071 2.4E-08 55.9 28.2 182 7-204 61-265 (300)
216 1mda_H Methylamine dehydrogena 98.3 9E-05 3.1E-09 65.2 20.3 98 20-128 35-158 (368)
217 3c75_H MADH, methylamine dehyd 98.3 3.7E-05 1.3E-09 69.0 17.5 171 16-200 83-297 (426)
218 2ghs_A AGR_C_1268P; regucalcin 98.3 0.00028 9.5E-09 60.4 22.1 113 6-127 88-209 (326)
219 2qe8_A Uncharacterized protein 98.1 0.00085 2.9E-08 57.7 20.7 120 5-126 64-222 (343)
220 3c75_H MADH, methylamine dehyd 98.0 0.00044 1.5E-08 62.0 17.8 183 12-202 122-406 (426)
221 3hrp_A Uncharacterized protein 97.9 0.0025 8.7E-08 56.5 21.2 112 13-127 176-297 (409)
222 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0089 3E-07 51.5 28.5 174 14-202 100-300 (376)
223 3sjl_D Methylamine dehydrogena 97.9 0.0005 1.7E-08 60.8 15.9 154 56-241 37-212 (386)
224 1kb0_A Quinohemoprotein alcoho 97.8 0.002 7E-08 61.0 20.4 115 18-133 175-351 (677)
225 3iuj_A Prolyl endopeptidase; h 97.8 0.0014 4.9E-08 61.9 19.1 185 11-204 178-411 (693)
226 1mda_H Methylamine dehydrogena 97.8 0.00029 9.8E-09 62.0 12.9 181 12-203 69-351 (368)
227 1kb0_A Quinohemoprotein alcoho 97.7 0.004 1.4E-07 59.0 20.6 117 16-134 127-298 (677)
228 3nol_A Glutamine cyclotransfer 97.7 0.0024 8.3E-08 53.3 16.4 156 6-203 39-206 (262)
229 2ece_A 462AA long hypothetical 97.7 0.0011 3.6E-08 59.8 15.1 113 10-127 190-351 (462)
230 2iwa_A Glutamine cyclotransfer 97.7 0.0035 1.2E-07 52.5 17.2 153 10-202 23-185 (266)
231 2fp8_A Strictosidine synthase; 97.7 0.019 6.6E-07 48.4 22.9 117 9-128 20-174 (322)
232 3nok_A Glutaminyl cyclase; bet 97.7 0.0033 1.1E-07 52.6 16.5 153 11-202 58-214 (268)
233 3hxj_A Pyrrolo-quinoline quino 97.6 0.017 5.8E-07 48.3 21.1 164 17-201 107-286 (330)
234 2xe4_A Oligopeptidase B; hydro 97.6 0.004 1.4E-07 59.6 18.9 103 9-118 175-291 (751)
235 2ece_A 462AA long hypothetical 97.5 0.0037 1.3E-07 56.2 16.1 165 12-197 142-351 (462)
236 3mbr_X Glutamine cyclotransfer 97.5 0.0084 2.9E-07 49.5 17.2 155 10-203 23-184 (243)
237 2p4o_A Hypothetical protein; p 97.5 0.03 1E-06 47.0 23.5 112 8-127 32-146 (306)
238 3hxj_A Pyrrolo-quinoline quino 97.5 0.0062 2.1E-07 51.0 16.6 168 11-197 140-323 (330)
239 1yiq_A Quinohemoprotein alcoho 97.5 0.0083 2.8E-07 56.9 18.9 107 26-132 182-342 (689)
240 1fwx_A Nitrous oxide reductase 97.4 0.0038 1.3E-07 57.9 14.9 162 20-199 105-309 (595)
241 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.055 1.9E-06 46.4 24.4 171 17-202 53-262 (376)
242 2qe8_A Uncharacterized protein 97.3 0.0018 6E-08 55.7 11.2 119 8-126 120-276 (343)
243 2xe4_A Oligopeptidase B; hydro 97.3 0.0062 2.1E-07 58.2 15.5 59 53-118 175-241 (751)
244 1yiq_A Quinohemoprotein alcoho 97.3 0.0023 7.9E-08 60.7 12.2 110 19-134 321-511 (689)
245 2hz6_A Endoplasmic reticulum t 97.2 6.4E-05 2.2E-09 65.8 0.5 101 18-134 93-198 (369)
246 4hw6_A Hypothetical protein, I 97.2 0.12 4E-06 46.1 23.5 113 8-129 139-260 (433)
247 1npe_A Nidogen, entactin; glyc 97.1 0.075 2.6E-06 43.4 25.2 108 9-125 37-152 (267)
248 1npe_A Nidogen, entactin; glyc 97.1 0.078 2.7E-06 43.2 21.5 155 8-202 79-242 (267)
249 2iwa_A Glutamine cyclotransfer 96.9 0.11 3.7E-06 43.4 17.7 158 53-248 22-191 (266)
250 3tc9_A Hypothetical hydrolase; 96.9 0.21 7.2E-06 44.3 24.8 113 9-129 138-258 (430)
251 1kv9_A Type II quinohemoprotei 96.8 0.13 4.3E-06 48.5 19.5 104 26-132 177-337 (668)
252 1kv9_A Type II quinohemoprotei 96.7 0.21 7.2E-06 47.0 19.8 114 16-134 116-285 (668)
253 2xbg_A YCF48-like protein; pho 96.6 0.25 8.6E-06 41.9 18.2 104 8-118 80-183 (327)
254 3qqz_A Putative uncharacterize 96.5 0.27 9.1E-06 40.7 24.8 120 4-127 23-150 (255)
255 2ad6_A Methanol dehydrogenase 96.5 0.18 6.1E-06 46.6 17.8 113 18-133 161-340 (571)
256 4a2l_A BT_4663, two-component 96.4 0.49 1.7E-05 45.1 20.8 167 8-203 310-485 (795)
257 1fwx_A Nitrous oxide reductase 96.4 0.054 1.8E-06 50.3 13.3 149 26-198 174-361 (595)
258 1w6s_A Methanol dehydrogenase 96.3 0.13 4.6E-06 47.8 15.5 110 18-133 167-347 (599)
259 4a2l_A BT_4663, two-component 96.2 0.63 2.1E-05 44.3 20.5 163 8-201 406-574 (795)
260 2p9w_A MAL S 1 allergenic prot 96.2 0.38 1.3E-05 41.4 16.8 164 8-198 13-215 (334)
261 2fp8_A Strictosidine synthase; 96.2 0.46 1.6E-05 39.7 21.2 114 9-127 81-215 (322)
262 3nol_A Glutamine cyclotransfer 96.1 0.25 8.7E-06 41.0 14.9 155 54-248 45-211 (262)
263 3v9f_A Two-component system se 96.1 1 3.5E-05 42.7 23.4 190 8-204 313-530 (781)
264 3mbr_X Glutamine cyclotransfer 96.0 0.47 1.6E-05 38.9 15.9 159 52-249 21-190 (243)
265 2xbg_A YCF48-like protein; pho 95.9 0.65 2.2E-05 39.3 23.3 108 7-124 121-230 (327)
266 1flg_A Protein (quinoprotein e 95.9 0.59 2E-05 43.2 17.8 74 56-133 250-360 (582)
267 3nok_A Glutaminyl cyclase; bet 95.8 0.35 1.2E-05 40.3 14.5 155 54-248 57-220 (268)
268 1flg_A Protein (quinoprotein e 95.5 0.18 6.1E-06 46.7 13.0 26 19-44 338-364 (582)
269 3v9f_A Two-component system se 95.4 1.8 6.2E-05 41.0 20.9 165 8-202 258-440 (781)
270 2p9w_A MAL S 1 allergenic prot 95.3 0.17 5.8E-06 43.6 10.9 116 9-127 64-214 (334)
271 2ad6_A Methanol dehydrogenase 95.3 0.1 3.6E-06 48.1 10.4 25 19-43 318-343 (571)
272 3a9g_A Putative uncharacterize 95.1 0.25 8.6E-06 42.6 11.7 107 8-116 29-153 (354)
273 1k3i_A Galactose oxidase precu 95.1 0.082 2.8E-06 49.5 9.2 104 18-129 199-324 (656)
274 3kya_A Putative phosphatase; s 94.2 3.1 0.00011 37.7 19.7 118 9-127 140-277 (496)
275 1k3i_A Galactose oxidase precu 94.2 0.57 1.9E-05 43.7 12.6 74 56-129 190-275 (656)
276 2p4o_A Hypothetical protein; p 94.2 2.1 7.1E-05 35.5 15.9 68 52-126 32-102 (306)
277 3sov_A LRP-6, low-density lipo 94.1 2.4 8E-05 35.8 20.4 109 9-126 80-195 (318)
278 1w6s_A Methanol dehydrogenase 93.9 0.39 1.3E-05 44.6 10.7 25 19-43 325-350 (599)
279 4hw6_A Hypothetical protein, I 93.9 3.2 0.00011 36.6 17.1 114 9-125 229-371 (433)
280 1n7d_A LDL receptor, low-densi 93.8 0.4 1.4E-05 45.4 10.8 156 10-202 455-618 (699)
281 3tc9_A Hypothetical hydrolase; 93.7 3.4 0.00012 36.4 20.0 111 7-127 178-300 (430)
282 2ism_A Putative oxidoreductase 93.4 2 6.7E-05 36.8 13.7 104 8-115 31-152 (352)
283 1ijq_A LDL receptor, low-densi 93.4 3.1 0.00011 34.8 22.5 109 9-126 78-193 (316)
284 3a9g_A Putative uncharacterize 93.3 3.2 0.00011 35.5 14.9 58 52-115 29-93 (354)
285 3v65_B Low-density lipoprotein 93.2 3.8 0.00013 35.4 22.5 110 8-126 116-232 (386)
286 3pbp_A Nucleoporin NUP82; beta 93.1 0.92 3.1E-05 40.4 11.1 75 53-127 67-157 (452)
287 3qqz_A Putative uncharacterize 92.9 3.3 0.00011 34.0 14.3 74 49-126 24-98 (255)
288 2ism_A Putative oxidoreductase 92.9 4 0.00014 34.8 16.3 60 53-116 32-96 (352)
289 3sre_A PON1, serum paraoxonase 92.9 4.2 0.00014 35.1 16.4 104 9-116 51-183 (355)
290 3p5b_L Low density lipoprotein 92.7 4.7 0.00016 35.1 22.5 109 9-126 160-275 (400)
291 3v64_C Agrin; beta propeller, 92.5 4.4 0.00015 34.4 22.2 110 8-126 73-189 (349)
292 3p5b_L Low density lipoprotein 92.5 4.9 0.00017 34.9 25.1 110 7-125 111-231 (400)
293 1tl2_A L10, protein (tachylect 92.4 1.1 3.7E-05 36.4 9.7 96 19-125 6-113 (236)
294 3v65_B Low-density lipoprotein 92.1 5.4 0.00018 34.4 26.1 105 12-126 81-188 (386)
295 3m0c_C LDL receptor, low-densi 92.0 9 0.00031 36.8 25.4 100 8-116 424-532 (791)
296 3sre_A PON1, serum paraoxonase 91.8 2.6 8.9E-05 36.4 12.3 94 26-126 138-250 (355)
297 1ijq_A LDL receptor, low-densi 91.7 5.2 0.00018 33.4 25.3 109 8-125 30-149 (316)
298 1cru_A Protein (soluble quinop 91.6 5.7 0.00019 35.4 14.7 109 8-116 27-162 (454)
299 3das_A Putative oxidoreductase 90.6 3.8 0.00013 35.2 12.1 108 8-116 32-158 (347)
300 2g8s_A Glucose/sorbosone dehyd 90.1 2.7 9.4E-05 35.9 10.9 107 8-115 18-147 (353)
301 3v64_C Agrin; beta propeller, 89.7 8.6 0.0003 32.6 26.8 106 11-127 37-146 (349)
302 3pbp_A Nucleoporin NUP82; beta 89.7 3.6 0.00012 36.7 11.2 156 62-237 31-198 (452)
303 1n7d_A LDL receptor, low-densi 89.7 2.1 7.1E-05 40.5 10.4 108 9-125 407-525 (699)
304 3sov_A LRP-6, low-density lipo 89.4 8.6 0.00029 32.2 22.5 106 10-125 37-151 (318)
305 3amr_A 3-phytase; beta-propell 88.8 11 0.00037 32.5 26.4 199 19-248 42-274 (355)
306 3s94_A LRP-6, low-density lipo 88.0 16 0.00056 33.7 16.5 109 9-126 85-200 (619)
307 3m0c_C LDL receptor, low-densi 86.3 24 0.00082 33.8 22.5 109 9-126 472-587 (791)
308 4a0p_A LRP6, LRP-6, low-densit 86.3 21 0.00071 33.1 21.9 111 9-126 390-506 (628)
309 2wg3_C Hedgehog-interacting pr 86.0 12 0.00041 33.4 12.6 109 9-117 15-158 (463)
310 1cru_A Protein (soluble quinop 84.8 21 0.0007 31.7 18.6 52 53-108 28-87 (454)
311 3das_A Putative oxidoreductase 83.9 20 0.00067 30.7 16.1 55 52-108 32-90 (347)
312 4a0p_A LRP6, LRP-6, low-densit 80.1 37 0.0013 31.4 20.8 108 9-126 81-195 (628)
313 1tl2_A L10, protein (tachylect 76.6 10 0.00035 30.7 7.7 100 11-121 91-203 (236)
314 3kya_A Putative phosphatase; s 74.6 48 0.0017 29.8 19.4 63 53-119 140-214 (496)
315 2g8s_A Glucose/sorbosone dehyd 74.4 38 0.0013 28.5 17.1 54 53-108 19-76 (353)
316 3ott_A Two-component system se 73.9 58 0.002 30.4 22.7 159 10-204 105-266 (758)
317 3amr_A 3-phytase; beta-propell 72.0 47 0.0016 28.5 19.5 101 26-126 98-208 (355)
318 2be1_A Serine/threonine-protei 71.2 15 0.00051 31.4 7.9 26 18-43 11-37 (339)
319 3zwu_A Alkaline phosphatase PH 69.9 17 0.00057 33.7 8.4 59 55-115 479-548 (592)
320 4a9v_A PHOX; hydrolase, beta-p 66.1 28 0.00095 32.1 8.9 62 53-116 477-549 (592)
321 3f7f_A Nucleoporin NUP120; nuc 61.7 12 0.00043 35.4 5.9 36 9-44 223-259 (729)
322 3ei3_A DNA damage-binding prot 61.3 1.4E+02 0.0047 29.9 19.8 133 27-197 864-998 (1158)
323 1zgk_A Kelch-like ECH-associat 56.9 76 0.0026 25.6 16.2 103 15-127 120-239 (308)
324 3s94_A LRP-6, low-density lipo 56.3 1.2E+02 0.0042 27.8 22.5 98 9-115 350-452 (619)
325 2vpj_A Kelch-like protein 12; 53.2 85 0.0029 25.0 19.4 109 14-129 60-185 (301)
326 3ii7_A Kelch-like protein 7; p 52.2 90 0.0031 25.0 18.4 96 14-119 99-211 (306)
327 2zwa_A Leucine carboxyl methyl 51.6 1E+02 0.0036 28.6 10.6 109 16-128 397-522 (695)
328 4gq2_M Nucleoporin NUP120; bet 48.5 22 0.00077 34.7 5.5 36 9-44 237-275 (950)
329 2uvk_A YJHT; unknown function, 45.1 1.3E+02 0.0043 24.7 19.1 54 62-117 200-261 (357)
330 3sbq_A Nitrous-oxide reductase 44.1 36 0.0012 31.5 5.7 75 53-127 324-407 (638)
331 2be1_A Serine/threonine-protei 43.6 83 0.0029 26.7 7.8 25 178-202 110-134 (339)
332 2xn4_A Kelch-like protein 2; s 43.3 1.2E+02 0.0042 24.1 17.6 103 15-127 107-228 (302)
333 4a9v_A PHOX; hydrolase, beta-p 42.9 90 0.0031 28.8 8.2 59 8-70 476-549 (592)
334 3zwu_A Alkaline phosphatase PH 40.3 1E+02 0.0035 28.4 8.3 56 9-69 477-548 (592)
335 4gq2_M Nucleoporin NUP120; bet 39.7 31 0.0011 33.7 5.0 36 99-134 237-272 (950)
336 2vpj_A Kelch-like protein 12; 38.1 1.5E+02 0.0051 23.5 15.5 103 15-127 158-277 (301)
337 3ei3_A DNA damage-binding prot 37.7 3.2E+02 0.011 27.3 23.8 108 9-125 515-633 (1158)
338 3b7f_A Glycosyl hydrolase, BNR 36.1 1.9E+02 0.0065 24.2 12.7 112 8-122 55-202 (394)
339 4fhn_B Nucleoporin NUP120; pro 33.6 35 0.0012 34.0 4.3 27 18-44 250-277 (1139)
340 3s25_A Hypothetical 7-bladed b 32.0 2.1E+02 0.0072 23.4 17.1 190 26-247 87-291 (302)
341 2zwa_A Leucine carboxyl methyl 31.9 3.1E+02 0.011 25.3 11.6 108 16-128 451-577 (695)
342 4fhn_B Nucleoporin NUP120; pro 30.0 32 0.0011 34.3 3.3 36 99-134 239-274 (1139)
343 3ott_A Two-component system se 29.4 3.4E+02 0.012 25.0 16.3 119 9-129 374-503 (758)
344 3c12_A FLGD, flagellar protein 29.4 96 0.0033 22.3 5.2 31 28-61 42-72 (138)
345 2xn4_A Kelch-like protein 2; s 29.4 2.1E+02 0.0072 22.6 18.1 96 15-118 60-165 (302)
346 4b4p_A FEDF, F18 fimbrial adhe 29.4 1.4E+02 0.0049 20.6 5.7 27 169-195 32-58 (151)
347 1sqj_A OXG-RCBH, oligoxylogluc 27.7 3.9E+02 0.013 25.1 12.6 113 7-120 14-144 (789)
348 1zso_A Hypothetical protein; s 27.0 1.5E+02 0.0051 22.3 5.9 34 54-88 112-145 (164)
349 1zgk_A Kelch-like ECH-associat 26.2 2.5E+02 0.0085 22.4 19.3 102 15-126 69-191 (308)
350 1olz_A Semaphorin 4D; developm 25.5 3.1E+02 0.011 25.5 9.1 69 53-123 398-477 (663)
351 3f7f_A Nucleoporin NUP120; nuc 24.3 1.2E+02 0.0042 28.6 6.0 56 181-238 233-305 (729)
352 4gz8_A Semaphorin-3A; multi-do 23.3 4.6E+02 0.016 24.4 9.7 28 96-123 468-495 (667)
353 4asc_A Kelch repeat and BTB do 22.3 3E+02 0.01 21.9 19.5 56 61-120 147-208 (315)
354 3mez_A Mannose-specific lectin 21.7 2E+02 0.0067 19.6 6.6 23 102-125 53-75 (111)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=216.92 Aligned_cols=191 Identities=12% Similarity=0.082 Sum_probs=146.2
Q ss_pred cCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788 5 QHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 81 (254)
Q Consensus 5 ~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~ 81 (254)
.|...|.+++|+++ .|++|+.|++|+||| .+++++..+..... +|...|++++|+|+|++||+|+.|+ +++||+..
T Consensus 80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 35678999999984 799999999999999 77776655544444 7999999999999999999999996 99999764
Q ss_pred CCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEee-------------------ceeEEEE
Q psy12788 82 SKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWK-------------------GKFEMIY 141 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~~-------------------~~~~~~~ 141 (254)
.... .....|...|++++|+|++. +|++|+.||.|++||+++++.... +.+.++.
T Consensus 159 ~~~~-----~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 159 QVVL-----SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp TEEE-----EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred CcEE-----EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 3321 12245778999999999985 689999999999999876543221 1123344
Q ss_pred ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EE-EEEECCCcEEEEeccCCceeeE
Q psy12788 142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RY-LVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~-~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
..++.+++||+.++. ....+ ..+...|++++|+|++ ++ ++++.|++|+|||+.++++...
T Consensus 234 ~~dg~v~~wd~~~~~--~~~~~-~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 234 DENGTVSLVDTKSTS--CVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp ETTSEEEEEESCC----CCEEE-ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred ccCCcEEEEECCCCc--EEEEE-cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 557789999999874 22333 3456789999999976 44 5688899999999999887543
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.1e-27 Score=205.93 Aligned_cols=214 Identities=12% Similarity=0.056 Sum_probs=162.0
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+.+|...|.+++|+|+ +|++|+.|++|++|| .++++++.+. .|..+|.+++|+|++++|++|+.|+ +++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-----ccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 46789999999999984 799999999999999 7788887765 6788999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE---e---------------eceeEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI---W---------------KGKFEM 139 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~---~---------------~~~~~~ 139 (254)
|+....... ....|...|++++|+|++++||+|+.||+|++||+..+... . ++.+.+
T Consensus 83 d~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 83 NYNTGEKVV-----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp ETTTCCEEE-----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred ECCCCcEEE-----EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 976544321 22357789999999999999999999999999997654211 1 112334
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec--Cc-EEEEEECCCcEEEEeccCCce-----------eeEe
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG--ND-RYLVARTPDTLLLGDLHRNLL-----------SEVL 205 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~--~~-~~~v~~~d~~i~i~dl~~~~~-----------~~~~ 205 (254)
+...++.+++||+..+. ....+...+...+..+.+++ ++ .+++++.|++|+|||++++++ ..+.
T Consensus 158 sgs~D~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235 (304)
T ss_dssp EEETTSEEEEEETTCSS--CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEECCCCC--ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence 45567789999998764 44555555566788999976 44 456788899999999998753 2445
Q ss_pred CCCCCCceeEEeeCceEEEEEeC
Q psy12788 206 WPDSGRNEKFYFDNVTVCLVFNA 228 (254)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~~~ 228 (254)
|+ |+++.......+....+|+.
T Consensus 236 ~~-p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 236 FH-PTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp EC-SSSSEEEEEETTSCEEEEET
T ss_pred EC-CCCCEEEEEcCCCeEEEEEC
Confidence 55 55544444444555566665
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=3e-27 Score=203.30 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=150.7
Q ss_pred cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+..|..+|.+++|++ +.|++|+.|++|++|| .+++++..+. +|...|++++|+|++++|++|+.|+ +++||
T Consensus 51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-----CCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence 557899999999987 5899999999999999 7889887775 7889999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe-------------------eceeE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW-------------------KGKFE 138 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~-------------------~~~~~ 138 (254)
+....... .....|...|++++|+| ++.+||+|+.||.|++||+....... ++.+.
T Consensus 126 ~~~~~~~~----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (304)
T 2ynn_A 126 WENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (304)
T ss_dssp GGGTTEEE----EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred CCCCcchh----hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence 76432211 12335677899999999 68999999999999999975322110 22356
Q ss_pred EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788 139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~ 202 (254)
++...++.+++||+.++ ..+.....+...|..++|+|++. +++++.|++|+|||+.++++.
T Consensus 202 ~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 67777899999999988 33333344567899999999875 566788999999999998764
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=206.49 Aligned_cols=189 Identities=12% Similarity=0.171 Sum_probs=150.0
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+++|+++ .+++++.|++|++|| .+++++..+. .+...+.+++|+|+|++||+|+.|+ +++|+
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID-----AGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe-----CCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 5789999999999974 799999999999999 7888887775 5667899999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEEe
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIYV 142 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~ 142 (254)
+........ ...+...|.+++|+|||++||+|+.||.|++||+.+++... ++.+.++..
T Consensus 151 ~~~~~~~~~-----~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 151 VESGKKEYS-----LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp TTTCSEEEE-----EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred cCCCceeEE-----ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 765443221 22345679999999999999999999999999987655432 123344555
Q ss_pred cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeE
Q psy12788 143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
.++.+++||+.++. .......+...|.+++|+|++. +++++.|++++|||+.++++...
T Consensus 226 ~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 226 DDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCcc---eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 67789999998873 3333344556899999999875 55678899999999998876433
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=1.2e-27 Score=214.35 Aligned_cols=213 Identities=14% Similarity=0.143 Sum_probs=161.4
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+.+|..+|.+++|+|+ .|++|+.|++|++|| .+|++.+++. +|...|++++|+|+|++||+|+.|+ +++|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-----~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----ccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 35689999999999984 799999999999999 7888876664 7999999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIY 141 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~ 141 (254)
|+...... .....|...|++++|+|+|++|++|+.|+.|++||+.+++... ++.+.++.
T Consensus 178 d~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 178 DFQGFECI-----RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp ETTSSCEE-----ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eCCCCcee-----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence 97543221 1123466789999999999999999999999999987654322 12344556
Q ss_pred ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC--------------------c-EEEEEECCCcEEEEeccCCc
Q psy12788 142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN--------------------D-RYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~--------------------~-~~~v~~~d~~i~i~dl~~~~ 200 (254)
..++.+++||+.++. .......+...|.+++|+|+ + .+++++.|++++|||+.+++
T Consensus 253 s~D~~v~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 253 SNDQTVRVWVVATKE---CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp ETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCc---eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 678899999998874 23233345678999999974 2 35678889999999999875
Q ss_pred e-----------eeEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788 201 L-----------SEVLWPDSGRNEKFYFDNVTVCLVFNA 228 (254)
Q Consensus 201 ~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~ 228 (254)
+ ..+.|+ ++|+..+....+....+|+.
T Consensus 330 ~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp EEEEEECCSSCEEEEEEC-SSSSCEEEEETTTEEEEECC
T ss_pred eEEEEECCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEEC
Confidence 3 345555 44444444444444455544
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=1e-26 Score=201.45 Aligned_cols=187 Identities=12% Similarity=0.072 Sum_probs=145.5
Q ss_pred ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEeCC------CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788 2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYESD------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd~~------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d 72 (254)
.|.+|..+|.+++|+| ++|+|||.|++|++||.. +.+++.+. +|...|++++|+|+|++|++|+.|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-----CCcccEEEEEECCCCCEEEEEeCC
Confidence 5789999999999986 479999999999999832 23344444 899999999999999999999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------ 133 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------ 133 (254)
+ +++||+...... .....|...|++++|+|+|++|++|+.||+|++||+..+....
T Consensus 87 ~~v~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 87 KTLRLWDVATGETY-----QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp SEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred CEEEEEECCCCCee-----EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 6 999997543321 1234577899999999999999999999999999974321110
Q ss_pred ---eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788 134 ---KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 134 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~ 201 (254)
++.+.++...++.+++||+.+. ........+...|.+++|+|++++ ++++.|++|+|||+.+++.
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 0113455567889999999887 333333445678999999998865 5678899999999998764
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=9.2e-27 Score=203.79 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=140.2
Q ss_pred ccccCCC-CCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788 2 RVVQHPV-PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL 76 (254)
Q Consensus 2 ~l~~h~~-~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l 76 (254)
+|.+|+. .|..++|+|+ +|++|+.|++|+||| ..+...... .... +|...|++++|+|+|++||+|+.|+ +++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~-~~~~-~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS-VLSE-GHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-EECS-SCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-eecc-ccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 4678987 9999999984 799999999999999 455432221 1123 7899999999999999999999996 999
Q ss_pred EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee---Ee----------------ecee
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT---IW----------------KGKF 137 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~---~~----------------~~~~ 137 (254)
|+.+....... .....|...|++++|+|||++||+|+.|+.|++||+..+.. .. ++.+
T Consensus 88 w~~~~~~~~~~---~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 88 WKKNQDDFECV---TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEECCC-EEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEccCCCeEEE---EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 99764332111 12235678999999999999999999999999999854311 10 1233
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCcEE-EEEECCCcEEEEec
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGNDRY-LVARTPDTLLLGDL 196 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl 196 (254)
.++...++.+++|+...+ ....+. ..+...|.+++|+|++++ ++++.|++++|||+
T Consensus 165 l~s~s~d~~i~~w~~~~~---~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 165 LASASYDDTVKLYREEED---DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEeCCCcEEEEEecCC---CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 455566788999998876 322222 334568999999998865 56788999999996
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=5.5e-27 Score=210.09 Aligned_cols=211 Identities=13% Similarity=0.139 Sum_probs=161.5
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+.+|...|.+++|+| ++|++||.|++|++|| .++++++++. +|...|++++|+|+|++|++|+.|+ +++|
T Consensus 145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-----GHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219 (410)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC-----CCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 3568999999999987 4799999999999999 6778885553 8899999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------------------
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------------- 134 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------------- 134 (254)
|+...... .....|...|.++.|+|||++|++|+.||.|++||+.+++....
T Consensus 220 d~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 294 (410)
T 1vyh_C 220 EVQTGYCV-----KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294 (410)
T ss_dssp ETTTCCEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred ECCCCcEE-----EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence 97653321 12235667899999999999999999999999999865432210
Q ss_pred -------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCc
Q psy12788 135 -------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 135 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~ 200 (254)
+.+.++...++.+++||+.++ ..+.....+...|.+++|++++++ ++++.|++|+|||+.+++
T Consensus 295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp GCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred hhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 335666777889999999988 333333445678999999998764 567889999999998876
Q ss_pred eeeE-eCCCCCCceeEEeeCceEEEEEeC-CeeEEEE
Q psy12788 201 LSEV-LWPDSGRNEKFYFDNVTVCLVFNA-GELSIIE 235 (254)
Q Consensus 201 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~ 235 (254)
+... .-+ .+.+.++.|++ +.+.+..
T Consensus 372 ~~~~~~~h----------~~~v~~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 372 CMKTLNAH----------EHFVTSLDFHKTAPYVVTG 398 (410)
T ss_dssp CCEEEECC----------SSCEEEEEECSSSSCEEEE
T ss_pred eEEEEcCC----------CCcEEEEEEcCCCCEEEEE
Confidence 4322 211 22466777777 4444333
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=4.9e-26 Score=198.60 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=148.1
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.|.+|..+|.+++|+|+ +|++||.|++|++|| .+++++..+. .|...|.+++|+|+|++||+|+.|+ +++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-----LRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-----cCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 46789999999999984 799999999999999 7888887765 6778999999999999999999996 8999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIY 141 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~ 141 (254)
++.......... .....|...|+++.|+|++. +++++.||.|++||+.+++... ++.+.++.
T Consensus 125 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEE-EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeE-EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 976543222110 12235677899999999986 8899999999999987654332 12234455
Q ss_pred ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788 142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~ 200 (254)
..++.+++||+.++. .......+...|++++|+|++. +++++.|++++|||+.+++
T Consensus 203 ~~d~~v~~wd~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~ 259 (340)
T 1got_B 203 ACDASAKLWDVREGM---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp ETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eCCCcEEEEECCCCe---eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence 567889999999873 3333344567899999999875 5667889999999998765
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=3e-26 Score=201.47 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=148.7
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.|.+|..+|.+++|+|+ +|+|||.|++|++|| .+++....+. .|...|.+++|+|+|++||+|+.|+ +++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-----MPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-----cCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 46799999999999984 799999999999999 7788776664 5667899999999999999999996 8999
Q ss_pred EecCCCccee-ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------eceeE
Q psy12788 78 AWSPSKSVWE-EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKFE 138 (254)
Q Consensus 78 d~~~~~~~~~-~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~~ 138 (254)
++........ ........|...|.+++|+|++++|++|+.||+|++||+..++... .+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 9754321110 0001123467789999999999999999999999999986554321 11234
Q ss_pred EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788 139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~ 200 (254)
++...++.+++||+.++. .+.....+...|++++|+|++. +++++.|++++|||+.+++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQ---CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp EEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCeEEEEECCCCc---EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 455567899999999883 3333345567899999999775 5668889999999998765
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=8.9e-27 Score=202.37 Aligned_cols=215 Identities=13% Similarity=0.157 Sum_probs=157.7
Q ss_pred ccccCCCCCEEEEecC------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788 2 RVVQHPVPPYALSWPA------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 73 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~- 73 (254)
++.+|...|.+|+|++ +.|+|||.|++|+||| .+++.... ..+. +|...|.+++|+|++.++|+|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~--~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ--WSLE-GHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE--EEEC-CCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee--eeec-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 3568999999999976 3799999999999999 45543222 2234 8999999999999999999999996
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------ecee
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKF 137 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~ 137 (254)
+++||+....... ....+...+.+++|+|||++||+|+.||.|++||+..++... ++.+
T Consensus 104 i~lWd~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 104 IRLWDLENGKQIK-----SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp EEEEETTTTEEEE-----EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred EEEEECCCCCEEE-----EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 9999975433211 112345678899999999999999999999999986544322 1234
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc-----------eeeEe
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL-----------LSEVL 205 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~-----------~~~~~ 205 (254)
.++...++.+++||+.++ ..+.....+...|.+++|+|+++++ +++.|++|+|||+.+++ +..+.
T Consensus 179 lasg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp EEEEETTSCEEEEETTTT---EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEcCCCeEEEEECCCC---cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 455566788999999988 3333334456689999999988655 56778999999998765 34566
Q ss_pred CCCCCCceeEEeeCceEEEEEeC
Q psy12788 206 WPDSGRNEKFYFDNVTVCLVFNA 228 (254)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~~~ 228 (254)
|+ |+++.......+....+|+.
T Consensus 256 ~s-p~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 256 FC-PDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp EC-TTSSEEEEEETTSCEEEEET
T ss_pred EC-CCCCEEEEEeCCCcEEEEeC
Confidence 66 55554444444455555554
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=2.7e-26 Score=200.38 Aligned_cols=227 Identities=12% Similarity=0.136 Sum_probs=160.8
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+++|+|+ +|++|+.|++|++|| .+++++..+. +|...|++++|+|+|++|++|+.|+ +++||
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-----GHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-----CCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-----CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 5789999999999974 799999999999999 7888887775 7889999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCC----------CeEEEeecCCcEEEEeeeeeeeE---------------e
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG----------SRIACGGLCGSVELFESVLKRTI---------------W 133 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG----------~~la~g~~dg~v~iwd~~~~~~~---------------~ 133 (254)
+.. ...... .....|...|.+++|+|++ .+|++++.||.|++||....... .
T Consensus 147 ~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 147 ILG-ECKFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP 223 (343)
T ss_dssp SSS-CEEEEC--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECT
T ss_pred ccC-Cceeee--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECC
Confidence 752 111110 1112456789999999998 79999999999999995321110 0
Q ss_pred eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE-eCCCCCCc
Q psy12788 134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV-LWPDSGRN 212 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~-~~~~~~g~ 212 (254)
++.+.++...++.+++||+..... ....+ ..+..|.+++|+|+++++++++|++++|||+.+++...+ ........
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~--~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~ 300 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTY-PQREF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSS-CSEEE--ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGG
T ss_pred CCCEEEEEcCCCeEEEEECCCCcc-cceee--cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcch
Confidence 234556666788999999954321 11222 245679999999999999999999999999988754221 11100000
Q ss_pred ---eeEEeeCceEEEEEeC-CeeEEEEeecCe
Q psy12788 213 ---EKFYFDNVTVCLVFNA-GELSIIEYGNNE 240 (254)
Q Consensus 213 ---~~~~~~~~~~~~~~~~-g~~~~~~~~~~~ 240 (254)
........+.++.|++ |...+....+..
T Consensus 301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp GBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred hhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence 0000123466778877 665555554443
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.8e-25 Score=191.78 Aligned_cols=188 Identities=14% Similarity=0.191 Sum_probs=149.0
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|..+|.+++|+|+ +|++|+.|++|++|+ .+++....+. +|...|.+++|+|+|++|++|+.|+ +++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-----cCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 5689999999999984 799999999999999 7788876664 7888999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEEe
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIYV 142 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~ 142 (254)
+...... .....|...|.+++|+|++++|++|+.||.|++||+..++... ++.+.++..
T Consensus 94 ~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 94 VSSGKCL-----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp TTTCCEE-----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcEE-----EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 7654322 1223466789999999999999999999999999987654332 122344555
Q ss_pred cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788 143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~ 202 (254)
.++.+++||+.++. ....+.......+..++|+|++++ ++++.|+.+++||+.+++..
T Consensus 169 ~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 169 YDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp TTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 67789999998874 222233344567999999998865 55677999999999988754
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=1.6e-25 Score=195.47 Aligned_cols=182 Identities=11% Similarity=0.115 Sum_probs=138.6
Q ss_pred ccccCCCCCEEEEe-----cC---CeEEEEeCCCcEEEEe-CCC-------CEEEEeeecCCCCCCCCEEEEEECCCCCE
Q psy12788 2 RVVQHPVPPYALSW-----PA---GYILAAGSDRIVTIYE-SDG-------RVHRIFDYTAPHYKEREFTVACSSPSGQA 65 (254)
Q Consensus 2 ~l~~h~~~v~~l~w-----~~---~~l~s~s~D~~i~vWd-~~g-------~~~~~~~~~~~~~~~~~v~~~a~sPdg~~ 65 (254)
.|.+|...|.+++| ++ ++|+|||.|++|++|| .++ .+...+ . +|...|++++|+|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l----~-~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL----T-GHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE----C-CCSSCEEEEEECSSTTE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh----c-cCCCceEEEEECCCCCE
Confidence 46799999999999 44 4799999999999999 432 234333 3 89999999999999999
Q ss_pred EEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------
Q psy12788 66 VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------- 133 (254)
Q Consensus 66 la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------- 133 (254)
+++|+.|+ +++||+...... .....|...|++++|+|||++|++|+.|+.|++||+.......
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~-----~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTY-----KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEE-----EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEEEcCCCcEEEEECCCCcEE-----EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 99999996 999997653321 1234577899999999999999999999999999975221110
Q ss_pred -------e----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEe
Q psy12788 134 -------K----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGD 195 (254)
Q Consensus 134 -------~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~d 195 (254)
. ..+.++...++.+++||.... .......+...|.+++|+|++++ ++++.|++++|||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ----IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE----EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc----eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 0 024455566889999994332 22223345678999999998865 5577899999999
Q ss_pred cc
Q psy12788 196 LH 197 (254)
Q Consensus 196 l~ 197 (254)
+.
T Consensus 242 ~~ 243 (343)
T 2xzm_R 242 IL 243 (343)
T ss_dssp SS
T ss_pred CC
Confidence 94
No 15
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=7.5e-26 Score=193.87 Aligned_cols=188 Identities=12% Similarity=0.107 Sum_probs=141.1
Q ss_pred cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CC--CCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-E
Q psy12788 3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SD--GRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-I 74 (254)
Q Consensus 3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~--g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-i 74 (254)
+.+|...|.+++|++ ++|++|+.|++|+||| .. ++++.++. +|..+|++++|+|+ |++||+|+.|+ +
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-----cccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 568999999999997 4899999999999999 32 35565554 89999999999874 89999999996 9
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeee----eEee--------------
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKR----TIWK-------------- 134 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~----~~~~-------------- 134 (254)
++||..... +... .....|...|.+++|+|+ |++||+|+.||.|++||+..+. ....
T Consensus 80 ~iWd~~~~~--~~~~-~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 80 MIWKEENGR--WSQI-AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEBSSSC--BCCC-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEcCCCc--eEEE-EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 999976432 1110 112346678999999998 9999999999999999986431 1100
Q ss_pred -------------ceeEEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCc---E-EEEEECCCcEEEEe
Q psy12788 135 -------------GKFEMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGND---R-YLVARTPDTLLLGD 195 (254)
Q Consensus 135 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~---~-~~v~~~d~~i~i~d 195 (254)
+.+.++...++.+++||+.++.. ....+. ..+...|.+++|+|++ . +++++.|++++|||
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 12455566788999999987631 111222 2355689999999973 4 56688899999999
Q ss_pred ccCC
Q psy12788 196 LHRN 199 (254)
Q Consensus 196 l~~~ 199 (254)
+.++
T Consensus 236 ~~~~ 239 (297)
T 2pm7_B 236 QDNE 239 (297)
T ss_dssp ESST
T ss_pred eCCC
Confidence 9764
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=5.5e-27 Score=207.78 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=147.8
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.|.+|...|++++|+|+ +|+|||.|++|+||| .+++....+. .|...|.+++|+|+|++||+|+.|+ +++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-----LHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----CCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-----cCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 36799999999999984 799999999999999 7788886665 6888999999999999999999996 9999
Q ss_pred EecCCCcceee--cCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe---------------------
Q psy12788 78 AWSPSKSVWEE--QPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW--------------------- 133 (254)
Q Consensus 78 d~~~~~~~~~~--~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~--------------------- 133 (254)
++......-.. .......|...|.++.|+|+ +.+|++|+.|++|++||+.+++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 98642211000 00122346678999999997 4579999999999999987654321
Q ss_pred -eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788 134 -KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~ 202 (254)
.+.+.++...++.+++||+.... ..+.....+...|++++|+|++. +++++.|++++|||+.+++..
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 12234455668899999997442 22333334567899999999875 556778999999999987643
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.95 E-value=7.4e-26 Score=212.60 Aligned_cols=193 Identities=11% Similarity=0.120 Sum_probs=151.2
Q ss_pred ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788 2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL 76 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l 76 (254)
.+.+|...|.+++|+|+ .|++||.|++|++|| ..++++.++. +|...|++++|+|||++||+|+.|+ +++
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEE
Confidence 46789999999999984 599999999999999 6777776664 8999999999999999999999996 999
Q ss_pred EEecCCCcceee--cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------ecee
Q psy12788 77 FAWSPSKSVWEE--QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------KGKF 137 (254)
Q Consensus 77 ~d~~~~~~~~~~--~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------~~~~ 137 (254)
||.......... .......|...|++++|+|||++||+|+.|++|++||+.+++... .+.+
T Consensus 217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 997543322111 001112577899999999999999999999999999987654332 2234
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~ 202 (254)
.++...++.+++|+...+ ........+...|++++|+|++++ ++++.|+++++||+.++++.
T Consensus 297 l~s~s~d~~i~~~~~~~~---~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 297 LVSISANGFINFVNPELG---SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp EEEEETTCCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEeCCCcEEEEeCCCC---CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 456667889999998877 333333455678999999998865 56788999999999987653
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=9e-27 Score=205.19 Aligned_cols=192 Identities=12% Similarity=0.079 Sum_probs=140.4
Q ss_pred ccCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788 4 VQHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS 80 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~ 80 (254)
.+|...|.+++|+|+ .+++++.|++|+||| .+++.......... +|...|++++|+|+|++|++|+.|+ +++||..
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEEC-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccC-CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 468889999999984 788999999999999 66665433323333 7889999999999999999999996 9999975
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEee-------------------ceeEEE
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWK-------------------GKFEMI 140 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~~-------------------~~~~~~ 140 (254)
..... .....|...|++++|+|++. ++++++.||.|++||+..++.... +.+.++
T Consensus 170 ~~~~~-----~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 170 QKAVL-----KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp TTEEE-----EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred CCcEE-----EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 43321 12234677999999999985 789999999999999865543210 112233
Q ss_pred EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EE-EEEECCCcEEEEeccCCceeeE
Q psy12788 141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RY-LVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~-~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
...++.+++||+.++. .......+...|++++|+|++ ++ ++++.|++|+|||+.++++...
T Consensus 245 g~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 245 GDETGNVSLVNIKNPD---SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp EESSSCEEEEESSCGG---GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred eecccceeEEECCCCc---EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence 4456789999998874 333334456789999999876 44 4678899999999999876543
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7e-26 Score=197.00 Aligned_cols=190 Identities=14% Similarity=0.084 Sum_probs=136.5
Q ss_pred cCCCCCEEEEecC--CeEEEEeCCCcEEEEeCC--------CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788 5 QHPVPPYALSWPA--GYILAAGSDRIVTIYESD--------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 73 (254)
Q Consensus 5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~--------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~- 73 (254)
+|...|.+++|+| ++|++|+.|++|++||.. .+++..+ . +|...|++++|+|+|++||+|+.|+
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~----~-~h~~~V~~v~~sp~g~~las~s~D~~ 130 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII----E-GHENEVKGVAWSNDGYYLATCSRDKS 130 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE----C-----CEEEEEECTTSCEEEEEETTSC
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE----c-CCCCcEEEEEECCCCCEEEEEeCCCE
Confidence 3999999999998 479999999999999842 2334333 3 7899999999999999999999996
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee--eeEe--e---------------
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK--RTIW--K--------------- 134 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~--~~~~--~--------------- 134 (254)
+++||.......++.. .....|...|++++|+|||++||+|+.|++|++||...+ +... .
T Consensus 131 v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 131 VWIWETDESGEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp EEEEECCTTCCCCEEE-EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred EEEEeccCCCCCeEEE-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence 9999974322222210 122346778999999999999999999999999997543 2111 0
Q ss_pred -ceeEEEEecCCeEEEEeCCCCCc---eeeEEEE---ecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788 135 -GKFEMIYVSPSQVLVKPLSGESK---GRGVILK---SQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 135 -~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~---s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~ 200 (254)
+.+.++...++.+++|++..+.. ....... ..+...|.+++|++++.+++++.|++++|||+.+++
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence 12334555678899999865310 0001122 125568999999987778889999999999998774
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=2.3e-25 Score=192.90 Aligned_cols=223 Identities=16% Similarity=0.161 Sum_probs=164.0
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+.+|...|.+++|+++ +|++|+.|++|++|| .++++++.+. +|...|.+++|+|++++|++|+.|+ +++|
T Consensus 60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----GHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 35689999999999984 799999999999999 7888887775 7899999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecC------CCeEEEeecCCcEEEEeeeeeeeEe----------------ec
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRD------GSRIACGGLCGSVELFESVLKRTIW----------------KG 135 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd------G~~la~g~~dg~v~iwd~~~~~~~~----------------~~ 135 (254)
|+.. ... .....|...|.++.|+|+ +.+|++|+.|+.|++||+...+... ++
T Consensus 135 d~~~--~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 135 TIKG--QCL----ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp ETTS--CEE----EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred ECCC--CeE----EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 9642 111 223456778999999994 5589999999999999986543221 13
Q ss_pred eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeE
Q psy12788 136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKF 215 (254)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~ 215 (254)
.+.++...++.+++||+.++. .+.... ...+|.+++|+|++.+++++.++.+++|++..+.+....-....+. ..
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~-~~ 283 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKK---AMYTLS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY-SK 283 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTE---EEEEEE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTC-CG
T ss_pred CEEEEEeCCCeEEEEECCCCc---EEEEec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccc-cc
Confidence 345556678899999999873 222222 3468999999999999998888999999998876532211101110 00
Q ss_pred EeeCceEEEEEeC-CeeEEEEeecCe
Q psy12788 216 YFDNVTVCLVFNA-GELSIIEYGNNE 240 (254)
Q Consensus 216 ~~~~~~~~~~~~~-g~~~~~~~~~~~ 240 (254)
.......++.|++ |...+....++.
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred CcCcceeEEEECCCCCEEEEeecCce
Confidence 0123456777877 666665555544
No 21
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=9.4e-26 Score=195.06 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=134.6
Q ss_pred cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-E
Q psy12788 3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-I 74 (254)
Q Consensus 3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i 74 (254)
+.+|...|.+++|++ ++|++||.|++|+||| .+++ ++..+. +|..+|++++|+| +|++||+|+.|+ +
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-----GHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-----CCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 468999999999987 5899999999999999 5554 344443 8999999999986 489999999996 9
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeee-e--Ee--e-------------
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKR-T--IW--K------------- 134 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~-~--~~--~------------- 134 (254)
++||..... +... .....|...|++++|+|+ |.+||+|+.||.|++||...+. . .. .
T Consensus 84 ~iWd~~~~~--~~~~-~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 84 IIWREENGT--WEKS-HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp EEECCSSSC--CCEE-EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred EEEECCCCc--ceEE-EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 999975422 1110 112346778999999998 8999999999999999986431 1 00 0
Q ss_pred ------------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cCCCceeEEEEecCc-----EEEEEECCC
Q psy12788 135 ------------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QYGYEITDVAIMGND-----RYLVARTPD 189 (254)
Q Consensus 135 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~~~i~~i~~~~~~-----~~~v~~~d~ 189 (254)
+.+.++...++.+++||+..+. ....+.. .+...|.+++|+|++ .+++++.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 1233444457789999997542 2122332 345579999999864 467788999
Q ss_pred cEEEEeccC
Q psy12788 190 TLLLGDLHR 198 (254)
Q Consensus 190 ~i~i~dl~~ 198 (254)
+++|||+.+
T Consensus 239 ~v~iw~~~~ 247 (316)
T 3bg1_A 239 RVFIWTCDD 247 (316)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEccC
Confidence 999999876
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=197.66 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=140.7
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEE
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFA 78 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d 78 (254)
.+|...|.+|+|+|+ +|++|+.|++|++|| .++++++++. +|...|++++|+|++. +|++|+.|+ +++||
T Consensus 124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd 198 (344)
T 4gqb_B 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198 (344)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CcCCceEEEEecCCCCCceeeecccccccccc
Confidence 479999999999984 799999999999999 7888887765 8999999999999985 789999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe----------------ec-eeEEE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW----------------KG-KFEMI 140 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~----------------~~-~~~~~ 140 (254)
....+.... .....+...+++++|+|+ +++||+|+.||.|++||+.+++.+. ++ .+.++
T Consensus 199 ~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 199 TRCPKPASQ---IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp TTSSSCEEE---CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred ccccceeee---eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence 765433211 111223457999999995 5688999999999999987654332 11 23455
Q ss_pred EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-E-EEEECCCcEEEEeccCCce
Q psy12788 141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-Y-LVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~-~v~~~d~~i~i~dl~~~~~ 201 (254)
...|+.+++||+.++ +...+ ..|...|++++|+|+++ + ++++.|++|++|++.+..+
T Consensus 276 gs~D~~i~vwd~~~~---~~~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 276 LSEDCSLAVLDSSLS---ELFRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EETTSCEEEECTTCC---EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EeCCCeEEEEECCCC---cEEEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 566788999999887 33333 34567899999999774 4 4578899999999987654
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.5e-24 Score=186.53 Aligned_cols=187 Identities=13% Similarity=0.135 Sum_probs=142.7
Q ss_pred ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCC-----EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788 2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGR-----VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~-----~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d 72 (254)
.|.+|...|.+|+|+| ++|+|||.|++|+||| .+++ +.+.+ . +|...|++++|+|+|++|++|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l----~-~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL----R-GHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE----C-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE----e-CCCCCEEEEEECCCCCEEEEEccc
Confidence 4779999999999987 3799999999999999 4432 33333 3 799999999999999999999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------ 133 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------ 133 (254)
+ +++|+....... .....+...+..+.++|++++|++|+.|+.+++||........
T Consensus 108 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 108 GTLRLWDLTTGTTT-----RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp SEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ccceEEeeccccee-----eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 6 889986432221 1223455678899999999999999999999999974322110
Q ss_pred -eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788 134 -KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~ 201 (254)
...+.++...+..+++||+.++ ........+...|++++|+|++++ ++++.|++++|||+.+++.
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 0112344456778999999988 333333445678999999998765 5678899999999998764
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.1e-25 Score=190.27 Aligned_cols=193 Identities=11% Similarity=0.104 Sum_probs=137.5
Q ss_pred ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.|.+|..+|.+++|++++|++|+.|++|++|| ..+ +++..+. .. +|...|++++|+|+|++||+|+.|+ ++||
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~--~~-~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD--ET-AHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC--TT-CCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe--cC-CccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 46789999999999999999999999999999 443 3343331 11 3888999999999999999999996 9999
Q ss_pred EecCCCc---ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-e---eeEe----------------e
Q psy12788 78 AWSPSKS---VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-K---RTIW----------------K 134 (254)
Q Consensus 78 d~~~~~~---~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~---~~~~----------------~ 134 (254)
+...... ..... .....|...|++++|+|||++||+|+.|++|++||+.. + +... +
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 86 AKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EC-------CCCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 9742111 11110 11234677999999999999999999999999999831 1 1110 1
Q ss_pred ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC--c-EEEEEECCCcEEEEeccCC
Q psy12788 135 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN--D-RYLVARTPDTLLLGDLHRN 199 (254)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~--~-~~~v~~~d~~i~i~dl~~~ 199 (254)
+.+.++...++.+++|+..++.. ..+.....+...|.+++|+|+ + .+++++.|++++|||+..+
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 23445556678899999876520 112222345568999999986 3 4667889999999998654
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=1.5e-25 Score=195.49 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=143.8
Q ss_pred cccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 3 VVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 3 l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
+.+|...|.++.|.+ +.|++++.|++|++|| .+++++..+. +|...|++++|+|++++|++|+.|+ +++||.
T Consensus 139 ~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 568999999999986 4799999999999999 7888886664 7889999999999999999999996 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------eceeEEEE
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKFEMIY 141 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~~~~~ 141 (254)
...... .....|...|++++|+|+|++||+|+.||.|++||+..++... ++.+.++.
T Consensus 214 ~~~~~~-----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 214 REGMCR-----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp TTCSEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCeeE-----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 543321 1223467789999999999999999999999999986543221 12334455
Q ss_pred ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788 142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD 195 (254)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d 195 (254)
..++.+++||+.++. .......+...|.+++|+|++. +++++.|++|+|||
T Consensus 289 ~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCc---EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 567789999998873 3333345667899999999886 56688899999997
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=1.4e-24 Score=189.80 Aligned_cols=189 Identities=14% Similarity=0.114 Sum_probs=140.1
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+|...|.+++|+|+ +|++|+.|++|++|| ..+. ++..+. +|...|++++|+|+|++||+|+.|+ +++|
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-----GHENEVKSVAWAPSGNLLATCSRDKSVWVW 132 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-----CCCCCceEEEEeCCCCEEEEEECCCeEEEE
Confidence 479999999999984 799999999999999 4443 444443 7999999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE----e--------------eceeEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI----W--------------KGKFEM 139 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~----~--------------~~~~~~ 139 (254)
|+......... .....|...|++++|+|+|++||+|+.|+.|++||...++.. . ++.+.+
T Consensus 133 d~~~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 133 EVDEEDEYECV--SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EECTTSCEEEE--EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ECCCCCCeEEE--EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 98653321111 122346678999999999999999999999999998654211 0 123455
Q ss_pred EEecCCeEEEEeCCCCCc-------------eeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCC
Q psy12788 140 IYVSPSQVLVKPLSGESK-------------GRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRN 199 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~-------------~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~ 199 (254)
+...++.+++|+...+.. .....+...+...|.+++|++++. +++++.|+++++||+..+
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 566778899998643210 001112223556899999998765 667888999999998754
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=3.2e-25 Score=210.74 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=148.9
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
++.+|...|.+++|+++ +|++||.|++|+||| .++++++.+. +|...|++++|+|+|++|++|+.|+ +++|
T Consensus 425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-----GHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe-----CCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 46789999999999984 799999999999999 7888887765 7899999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcEEEEeeeeeeeEe----------------eceeEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSVELFESVLKRTIW----------------KGKFEM 139 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~ 139 (254)
|..... .... ......|...|++++|+|++ .+|++|+.||.|++||+..++... ++.+.+
T Consensus 500 d~~~~~-~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 500 NTLGEC-KYTI-SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp CTTSCE-EEEE-CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ECCCCc-ceee-ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 953211 1111 01112456789999999997 589999999999999986543321 123445
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
+...++.+++||+.++. .+ ..-.....|..++|+|++.+++++.++.|+|||++++++.
T Consensus 578 sg~~Dg~i~iwd~~~~~---~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGK---KL-YSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636 (694)
T ss_dssp EEETTSBCEEEETTTTE---EE-ECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred EEeCCCeEEEEECCCCc---eE-EEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence 55667889999999883 22 2223345799999999999999999999999999998754
No 28
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=2.9e-24 Score=183.66 Aligned_cols=188 Identities=10% Similarity=0.148 Sum_probs=138.0
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC----EEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR----VHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN 73 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~----~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~ 73 (254)
+.+|...|.+++|+|+ +|++|+.|++|++|| .++. ....+. +|...|++++|+| |+++|++|+.|+
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-----AHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-----CCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-----cCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 5689999999999984 799999999999999 5442 444443 7889999999999 699999999996
Q ss_pred -EEEEEecCCCcc-----eeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeeeEe------------
Q psy12788 74 -IKLFAWSPSKSV-----WEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRTIW------------ 133 (254)
Q Consensus 74 -i~l~d~~~~~~~-----~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~~~------------ 133 (254)
+++||+...... +... .....+...|++++|+|+ |++|++++.||.|++||+..++...
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKL-CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred eEEEEecCCCcccccccCccee-eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 999998754321 1110 122346678999999999 9999999999999999986543211
Q ss_pred --------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cCCCceeEEEEecCc----E-EEEEE
Q psy12788 134 --------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QYGYEITDVAIMGND----R-YLVAR 186 (254)
Q Consensus 134 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~~~i~~i~~~~~~----~-~~v~~ 186 (254)
.+.+.++...++.+++++...+ ....+.. .+...|++++|+|++ . +++++
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 0223333344455555555555 2222332 345689999999985 4 56688
Q ss_pred CCCcEEEEeccCC
Q psy12788 187 TPDTLLLGDLHRN 199 (254)
Q Consensus 187 ~d~~i~i~dl~~~ 199 (254)
.|++|+|||+.++
T Consensus 238 ~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 238 KDGRIRIFKITEK 250 (351)
T ss_dssp TTSCEEEEEEEEC
T ss_pred CCCeEEEEeCCCC
Confidence 8999999999875
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=1.7e-24 Score=205.86 Aligned_cols=187 Identities=16% Similarity=0.152 Sum_probs=144.7
Q ss_pred ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CC-----CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788 2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SD-----GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~-----g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d 72 (254)
.|.+|...|.+|+|++ ++|+|||.|++|++|| .. +.+.+.+. +|...|++++|+|+|++|++|+.|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-----GHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-----CCCCcEEEEEECCCCCEEEEEeCC
Confidence 4679999999999986 4799999999999998 33 23344443 899999999999999999999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------ 133 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------ 133 (254)
+ ++|||+...... .....|...|++++|+|||++|++|+.|++|++||........
T Consensus 452 g~v~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 452 GELRLWDLAAGVST-----RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp SEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred CcEEEEECCCCcce-----eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 6 999997543221 1234577899999999999999999999999999964221100
Q ss_pred -e--ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788 134 -K--GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 134 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~ 201 (254)
. ..+.++...++.+++||+.++. .......+...|.+++|+|++++ ++++.|++|+|||+.+++.
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSNCK---LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred CCCCcceEEEEeCCCeEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 0 1234555668899999998873 33333445678999999998865 5677899999999998864
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=2.8e-24 Score=191.21 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=137.2
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCC-------------CCCCCEEEEEECCCCCEEE
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-------------YKEREFTVACSSPSGQAVV 67 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~-------------~~~~~v~~~a~sPdg~~la 67 (254)
.+|...|.+++|+|+ +|++|+ |+++++|+ .+|+.+..+...... .+...|++++|+|+|++||
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 369999999999985 677765 78999999 788887666421100 0122499999999999999
Q ss_pred EEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------------
Q psy12788 68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------- 133 (254)
Q Consensus 68 ~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------- 133 (254)
+|+.|+ +++||+...... .....|...|++++|+|||++|++|+.|+.|++||+.+++...
T Consensus 140 s~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 214 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIV-----MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214 (393)
T ss_dssp EEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred EEcCCCeEEEEECCCCcEE-----EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEE
Confidence 999996 999997543221 1223567789999999999999999999999999987654321
Q ss_pred ---eceeEEEEecCCeEEEEeCCCCCceeeEEEE------ecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCC
Q psy12788 134 ---KGKFEMIYVSPSQVLVKPLSGESKGRGVILK------SQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRN 199 (254)
Q Consensus 134 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~------s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~ 199 (254)
++.+.++...++.+++||+.++. ....+. ..+...|.+++|++++++ ++++.|++++|||+.+.
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 22344555567889999998873 111121 234568999999998864 56778999999999753
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-23 Score=181.24 Aligned_cols=187 Identities=16% Similarity=0.142 Sum_probs=149.6
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
+|.+|..+|.+++|+|+ +|++++.|+.|++|| .+++++..+. +|...|++++|+|++++|++++.|+ +++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-----GHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-----hcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 46799999999999984 799999999999999 7888887664 7889999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-----CcEEEEeeeeeeeE--------------------
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-----GSVELFESVLKRTI-------------------- 132 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-----g~v~iwd~~~~~~~-------------------- 132 (254)
|+...... ..+.+...|.+++|+|+|++|++++.+ |.|++||+..++..
T Consensus 102 d~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 102 DVSNGQCV------ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp ETTTCCEE------EEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred ECCCCcEE------EEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 97654332 223366789999999999999999999 99999998654210
Q ss_pred ---------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788 133 ---------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 133 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~ 201 (254)
.++.+.++...++.+.+||+.++. ........+...|..++|++++.+ ++++.|+.+++||+.++++
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 012344555667899999998842 344444456678999999998864 5677899999999998764
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=3.6e-24 Score=197.77 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=134.3
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+|.+|...|.+|+|+|+ +||+|+.|++|+|||.+|++++++. +|...|++++|+|||++||+++.|+ +++||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~-----gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEe-----CCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 58899999999999985 7999999999999999899998876 8999999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEec
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVS 143 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~ 143 (254)
+.. ... .....|...|.+++|+|||++|++++.|+.+++|+......... .........
T Consensus 86 ~~~--~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (577)
T 2ymu_A 86 RNG--QLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 159 (577)
T ss_dssp TTS--CEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCC--CEE----EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccc
Confidence 532 111 12234677999999999999999999999999999643322110 111222333
Q ss_pred CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788 144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~ 198 (254)
+..+.+++.... .......+...|..+.++++++ +++++.|+++++||...
T Consensus 160 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~ 211 (577)
T 2ymu_A 160 DKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211 (577)
T ss_dssp TSEEEEECTTSC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred ccceecccccee----eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC
Confidence 445556654332 2233334456777777877665 44566677888887543
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.94 E-value=7.4e-25 Score=192.56 Aligned_cols=180 Identities=15% Similarity=0.193 Sum_probs=143.1
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IKL 76 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~l 76 (254)
+.+|...|.+++|+++ .|++++.|++|++|| .+++++..+. +|...|.+++|+| +|++|++|+.|+ +++
T Consensus 150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~ 224 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-----GHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224 (354)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-----CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 4579999999999974 799999999999999 8889887775 7888999999988 578999999996 999
Q ss_pred EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------eceeE
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKFE 138 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~~ 138 (254)
||....... .....|...|++++|+|+|++||+|+.|++|++||++.++... .+.+.
T Consensus 225 wd~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 225 WDMRSGQCV-----QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred EECCCCcEE-----EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 997653321 1123467789999999999999999999999999986543221 12234
Q ss_pred EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788 139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD 195 (254)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d 195 (254)
++...++.+++||+.++. .+.....+...|.+++|+|+++ +++++.|++++||+
T Consensus 300 ~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 445567789999998873 3433345667899999999886 45678899999996
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=5e-24 Score=182.71 Aligned_cols=187 Identities=14% Similarity=0.259 Sum_probs=141.2
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+++|+|+ +|++|+.|++|++|| .+++++..+. +|...|.+++|+|++++|++|+.|+ +++||
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 135 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 5679999999999984 799999999999999 7888887775 7888999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------eceeEEEE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------KGKFEMIY 141 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------~~~~~~~~ 141 (254)
....... .....|..+|++++|+|+|++|++|+.||.|++||+..++... .+.+.++.
T Consensus 136 ~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 136 VKTGKCL-----KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp TTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred CCCCEEE-----EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 7643321 1123456789999999999999999999999999986554321 12234455
Q ss_pred ecCCeEEEEeCCCCCceeeEEEEecCCCcee--EEEEe-cCcE-EEEEECCCcEEEEeccCCcee
Q psy12788 142 VSPSQVLVKPLSGESKGRGVILKSQYGYEIT--DVAIM-GNDR-YLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~--~i~~~-~~~~-~~v~~~d~~i~i~dl~~~~~~ 202 (254)
..++.+++||+.++ ........+...+. ...++ +++. +++++.|++|++||+.++++.
T Consensus 211 ~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 211 TLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp ETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred cCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence 56788999999887 33322222222222 23344 3444 455677999999999988754
No 35
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=1.1e-24 Score=192.91 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=146.6
Q ss_pred cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEE
Q psy12788 3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKL 76 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l 76 (254)
+.+|...|.+++|.|+ .|++||.|++|++|| .+|+++..+......+|...|.+++|+| ++++|++|+.|+ +++
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 5689999999999873 699999999999999 7888887763222116888999999987 899999999996 999
Q ss_pred EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------------
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------------- 133 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------------- 133 (254)
||+....... .....|...|++++|+|||++|++|+.||+|++||+.+++...
T Consensus 233 wd~~~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 233 WDLRITSRAV----RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp EETTTTCCCC----EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred EECCCCCcce----EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 9975322211 1224577899999999999999999999999999987654321
Q ss_pred eceeEEEEecCCeEEEEeCCCCCceeeEEEE---ecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc
Q psy12788 134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILK---SQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL 200 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~ 200 (254)
.+.+.++...++.+.+||+..+. ....+. ..+...|.+++|+|++.++ +++.|++++|||+..++
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEEECCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 12334445567789999998774 222221 2355689999999988655 56779999999987654
No 36
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=5.3e-24 Score=184.36 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=154.2
Q ss_pred cccCCCCCEEEEecCC-----eEEEEeCCCcEEEEe-CC-CCEE-EEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788 3 VVQHPVPPYALSWPAG-----YILAAGSDRIVTIYE-SD-GRVH-RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN- 73 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~-----~l~s~s~D~~i~vWd-~~-g~~~-~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~- 73 (254)
+.+|...|.+++|+|+ +|++|+.|++|++|| .+ ++.+ ..+. +|...|++++|+|++++|++|+.|+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCc
Confidence 5689999999999984 699999999999999 54 5555 4443 6888999999999999999999996
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEE--ecCCCeEEEeecCCcEEEEeeeeeeeEeec----------------
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFESVLKRTIWKG---------------- 135 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdG~~la~g~~dg~v~iwd~~~~~~~~~~---------------- 135 (254)
+++||+..... .....|...|++++| +|+|++|++++.||.|++||+..++....-
T Consensus 110 v~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 110 AKMWDLSSNQA------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp EEEEETTTTEE------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred EEEEEcCCCCc------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 99999754321 223457789999999 999999999999999999998654321100
Q ss_pred ---------------------------------------------eeEEEEecCCeEEEEeCCCCCc-eeeEEEEecCC-
Q psy12788 136 ---------------------------------------------KFEMIYVSPSQVLVKPLSGESK-GRGVILKSQYG- 168 (254)
Q Consensus 136 ---------------------------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~- 168 (254)
...++...++.+.+|++..... .....+..+..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 0023344566778888876521 02222322211
Q ss_pred ----------CceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEe
Q psy12788 169 ----------YEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEY 236 (254)
Q Consensus 169 ----------~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~ 236 (254)
..|.+++|+|+++ +++++.|+.|+|||+.+++.....-. . ..++.++.|++ |...+..-
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~--------~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-L--------DQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-C--------SSCEEEEEECTTSSCEEEEE
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-C--------CCCceEEEECCCCCeEEEEe
Confidence 1599999999875 55677899999999998876433211 1 23467788887 55555544
Q ss_pred e
Q psy12788 237 G 237 (254)
Q Consensus 237 ~ 237 (254)
+
T Consensus 335 ~ 335 (368)
T 3mmy_A 335 S 335 (368)
T ss_dssp C
T ss_pred c
Confidence 3
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=2.6e-24 Score=186.42 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=157.6
Q ss_pred CCCCCEEEEecCC------eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEE
Q psy12788 6 HPVPPYALSWPAG------YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKL 76 (254)
Q Consensus 6 h~~~v~~l~w~~~------~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l 76 (254)
|...|.+++|+++ +|++|+.|++|++|| .+++++..+. +|...|++++|+| ++++|++|+.|+ +++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i 142 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDHALRL 142 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 6788999999875 699999999999999 7788887775 7888999999999 999999999996 999
Q ss_pred EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE------------------------
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI------------------------ 132 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~------------------------ 132 (254)
||+......... .....+...|++++|+|+|++|++++.||.|++||+..++..
T Consensus 143 wd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 143 WNIQTDTLVAIF--GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp EETTTTEEEEEE--CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred EEeecCeEEEEe--cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 997643321111 001346779999999999999999999999999998654321
Q ss_pred ------------------eeceeEEEEecCCeEEEEeCCCCCc-----------eeeEEEEecCCCceeEEEEecC--cE
Q psy12788 133 ------------------WKGKFEMIYVSPSQVLVKPLSGESK-----------GRGVILKSQYGYEITDVAIMGN--DR 181 (254)
Q Consensus 133 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~l~s~~~~~i~~i~~~~~--~~ 181 (254)
+.+.+.++...++.+++||+.++.. ...+.....+...|..++|+++ ++
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred cCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence 1134555666788999999877631 0112222334567999999988 76
Q ss_pred EEE-EECCCcEEEEeccCCceee---EeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEeecC
Q psy12788 182 YLV-ARTPDTLLLGDLHRNLLSE---VLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYGNN 239 (254)
Q Consensus 182 ~~v-~~~d~~i~i~dl~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 239 (254)
+++ ++.|+.|++||+.+++... ..+... .+ ...+.++.|++ |.+.+....+.
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~-----~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KC-----GAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCT-TC-----CSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEccc-cc-----CCceEEEEeCCCCCeEEEEeCCC
Confidence 554 6678999999999875321 122211 00 13466777776 44444444333
No 38
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.93 E-value=8.4e-24 Score=198.57 Aligned_cols=187 Identities=9% Similarity=0.069 Sum_probs=141.1
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---E
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---I 74 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~---i 74 (254)
+.+|...|.+++|+|+ +||+|+.|++|+||| .+++ +...+. +|..+|.+++|+|||++||+++.+. .
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-----~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-----ccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 5689999999999984 799999999999999 4443 343443 7888999999999999999988652 3
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEe----------------ecee
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIW----------------KGKF 137 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~----------------~~~~ 137 (254)
++|.|+..... .....|...|++++|+||+. +||+|+.|++|++||...++... ++.+
T Consensus 130 ~v~~wd~~~~~-----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 130 HVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp EEEETTTCCBC-----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEeeCCCCc-----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE
Confidence 56665543321 12245677999999999997 59999999999999975543321 1234
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEe------cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKS------QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s------~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~ 201 (254)
.++...++.+++||+.++. ....+.. .+...|.+++|+|+++ +++++.|++++|||+.++++
T Consensus 205 las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 4556667889999998874 2222212 3566899999999886 55688899999999998764
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.93 E-value=2.3e-23 Score=185.26 Aligned_cols=184 Identities=18% Similarity=0.230 Sum_probs=138.0
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK 83 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~ 83 (254)
..|.+++|+|+ +|++|+.|++|++|| .+++++..+. +|...|++++|+|+|++|++|+.|+ +++||+....
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-----cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 34889999984 799999999999999 6777776554 7999999999999999999999996 9999975432
Q ss_pred cceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe-----------------------eceeEE
Q psy12788 84 SVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW-----------------------KGKFEM 139 (254)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~-----------------------~~~~~~ 139 (254)
. ...+.+...+.+++|+| ||++||+|+.||.|++||..+++... ++.+.+
T Consensus 199 ~------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 199 C------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp E------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred e------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 2 12234556799999999 99999999999999999976543221 123445
Q ss_pred EEecCCeEEEEeCCCCCc---------eeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788 140 IYVSPSQVLVKPLSGESK---------GRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~---------~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~ 202 (254)
+...++.+++||+.+... +........+...|.++++++++++ ++++.|+++++||+.+++..
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 556678999999875421 0111122234567999999998865 55778999999999988753
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=9e-24 Score=187.48 Aligned_cols=189 Identities=13% Similarity=0.128 Sum_probs=142.2
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+++|+|+ .|++|+.|++|++|| .+++++..+. +|...|++++|+|+|++|++|+.|+ +++||
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 4589999999999984 799999999999999 7788877765 7889999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCC---------------------CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----
Q psy12788 79 WSPSKSVWEEQPNKTIPN---------------------LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---- 133 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---------------------~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---- 133 (254)
+......... .....+ ...+++++|+|||++|++|+.||.|++||+..++...
T Consensus 210 ~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 210 CGTGTTIHTF--NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp TTTTEEEEEE--CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCCCceeEEe--ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 7644332211 000011 2345666678999999999999999999986544321
Q ss_pred -------------ece-eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCC
Q psy12788 134 -------------KGK-FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRN 199 (254)
Q Consensus 134 -------------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~ 199 (254)
.+. +.++...++.+++||+.++.. ....+..+++..|..+.+.+...+++++.|++++|||+...
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 112 445556678999999988741 13455556777899997764334566777999999998874
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=1e-23 Score=187.19 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=138.7
Q ss_pred EEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcce
Q psy12788 11 YALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVW 86 (254)
Q Consensus 11 ~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~ 86 (254)
....|++ ++|++|+.|++|++|| .++++...+ . +|...|++++|+|+|++|++|+.|+ +++||+......
T Consensus 101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~- 174 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID----Q-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP- 174 (420)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET----T-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-
T ss_pred EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec----c-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-
Confidence 3345665 5899999999999999 666666433 3 7889999999999999999999996 999997654332
Q ss_pred eecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------------------------
Q psy12788 87 EEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------------------------- 133 (254)
Q Consensus 87 ~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------------------------- 133 (254)
.....|...|++++|+|||++|++|+.||.|++||+..++...
T Consensus 175 ----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 175 ----RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp ----EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred ----eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 1223467899999999999999999999999999987554332
Q ss_pred -------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccCCc
Q psy12788 134 -------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 134 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~~~ 200 (254)
++.+.++...++.+.+||+.++. ....+...+...|.+++|+|++. +++++.|+.+++||+.+++
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 12345556677889999999874 33334344567899999999875 5667889999999999875
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=2.2e-23 Score=181.46 Aligned_cols=190 Identities=14% Similarity=0.182 Sum_probs=147.2
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+.+|...|.+++|+| ++|++++.|++|++|| .+++....+. .. .|...|++++|+|+|++|++|+.|+ +++|
T Consensus 47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV--IL-RINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE--CC-CCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE--ee-cCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 3568999999999997 4799999999999999 6666554432 23 6788999999999999999999986 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee------------------eeeeEe------
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV------------------LKRTIW------ 133 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~------------------~~~~~~------ 133 (254)
|+......+.. ......+...|++++|+|||++|++|+.||.|++||+. .++...
T Consensus 124 d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 124 YFEQENDWWVC-KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp EEETTTTEEEE-EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred EecCCCcceee-eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 98765432211 12223456789999999999999999999999999953 222211
Q ss_pred ----------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788 134 ----------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR 198 (254)
Q Consensus 134 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~ 198 (254)
++.+.++...++.+++||+.++. .+.....+...|.+++|++++++++++.|+.+++||+.+
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---eeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 12244455567889999998874 333334456689999999999999888999999999988
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=4e-24 Score=188.24 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=140.6
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEE
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFA 78 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d 78 (254)
.+|...|.+|+|+|+ +|++|+.|++|++|| .+++++..+. +|...|++++|+|+++ ++++++.|+ +++||
T Consensus 136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 479999999999984 799999999999999 7788886664 7889999999999985 788999885 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe----------------e-ceeEEE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW----------------K-GKFEMI 140 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~----------------~-~~~~~~ 140 (254)
+...+.... .....+...+++++|+|+ +.+||+|+.|+.|++||+..++... . ..+.++
T Consensus 211 ~~~~~~~~~---~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 211 TRKPKPATR---IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TTSSSCBCB---CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred CCCCceeee---eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 754332211 112234567999999998 5689999999999999986543321 1 124455
Q ss_pred EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec-Cc-EEEEEECCCcEEEEeccC
Q psy12788 141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-ND-RYLVARTPDTLLLGDLHR 198 (254)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~-~~~v~~~d~~i~i~dl~~ 198 (254)
...++.+++||+.++ +.+.. -.+...|++|+|+| ++ .+++++.|++|++||+.+
T Consensus 288 gs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 288 ISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 566788999999887 33332 24567899999998 45 466788999999999865
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-23 Score=182.65 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=142.6
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN- 73 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~- 73 (254)
.+.+|...|.+++|+| ++|++|+.|++|++|| . +++++..+. +|...|++++|+|+ +++|++|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-----CCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4678999999999998 4799999999999999 4 334554443 78899999999988 99999999996
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeee----Ee--------------
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRT----IW-------------- 133 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~----~~-------------- 133 (254)
+++||+.... +... .....+...|++++|+|+ |++|++++.||.|++||+..+.. ..
T Consensus 81 v~iwd~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 81 VLIWKEENGR--WSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEEEETTE--EEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred EEEEEcCCCc--eeEe-eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 9999986532 2110 122346678999999999 99999999999999999864311 00
Q ss_pred -------------eceeEEEEecCCeEEEEeCCCCCce-eeEEEEecCCCceeEEEEecC---cEE-EEEECCCcEEEEe
Q psy12788 134 -------------KGKFEMIYVSPSQVLVKPLSGESKG-RGVILKSQYGYEITDVAIMGN---DRY-LVARTPDTLLLGD 195 (254)
Q Consensus 134 -------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~i~~i~~~~~---~~~-~v~~~d~~i~i~d 195 (254)
++.+.++...++.+++||+.++... ........+...|.+++|+|+ +.+ ++++.|++++|||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 1334445556778999999876411 111122235568999999998 654 5677899999999
Q ss_pred ccCC
Q psy12788 196 LHRN 199 (254)
Q Consensus 196 l~~~ 199 (254)
+.++
T Consensus 238 ~~~~ 241 (379)
T 3jrp_A 238 QDNE 241 (379)
T ss_dssp ESST
T ss_pred CCCC
Confidence 9876
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=2.3e-24 Score=194.06 Aligned_cols=193 Identities=8% Similarity=-0.000 Sum_probs=138.1
Q ss_pred cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEE
Q psy12788 3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKL 76 (254)
Q Consensus 3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l 76 (254)
...|...|++|+|+| ++||+|+.|++|+||| ..++....+ ... +|...|++++|+| ++++|++|+.|+ +++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~--~~~-gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI--KGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE--CCC-SSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE--Ecc-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 346888899999987 3799999999999999 555433222 233 7999999999999 689999999996 999
Q ss_pred EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------ece-eEEE
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGK-FEMI 140 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~-~~~~ 140 (254)
||+.... .... .....+...+.+++|+|||++|++|+.||.|++||+..+.... .+. +.++
T Consensus 192 wd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 192 QDFKGNI--LRVF-ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EETTSCE--EEEE-ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred eeccCCc--eeEE-eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEE
Confidence 9975321 1110 0011123468899999999999999999999999975332110 111 2334
Q ss_pred EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788 141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~ 201 (254)
...++.+++||+.+......+.....+...|++++|+|++. +++++.|++|+|||+.++.+
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 55678899999976531111222223456899999999875 45678899999999998754
No 46
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=1.3e-23 Score=194.09 Aligned_cols=208 Identities=14% Similarity=0.170 Sum_probs=152.9
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
+.+|...|.+++|+|+ .|++++.|++|++||.+++++..+. +|...|++++|+|||++||+|+.|+ +++||.
T Consensus 340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec-----CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 5678999999999984 7999999999999998898887775 7888999999999999999999996 899984
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE--e-------------eceeEEEEecC
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI--W-------------KGKFEMIYVSP 144 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~--~-------------~~~~~~~~~~~ 144 (254)
+ .... .....|...|++++|+||+++||+++.|+.|++||...+... . ++.+.++...+
T Consensus 415 ~--~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 415 N--GQLL----QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp T--CCEE----EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred C--CCEE----EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 2 2111 123456778999999999999999999999999996322111 0 12344455567
Q ss_pred CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEE
Q psy12788 145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVC 223 (254)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (254)
+.+++|+.. + ..+.....+..+|++++|+|+++++ +++.|++|+|||.....+..+.= . .+.+.+
T Consensus 489 ~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~--h--------~~~v~~ 554 (577)
T 2ymu_A 489 KTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--H--------SSSVWG 554 (577)
T ss_dssp SEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC--C--------SSCEEE
T ss_pred CEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC--C--------CCCEEE
Confidence 789999964 3 2222233456789999999988754 57789999999964333322221 1 234667
Q ss_pred EEEeC-CeeEEEE
Q psy12788 224 LVFNA-GELSIIE 235 (254)
Q Consensus 224 ~~~~~-g~~~~~~ 235 (254)
+.|++ |...+..
T Consensus 555 ~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 555 VAFSPDGQTIASA 567 (577)
T ss_dssp EEECTTSSCEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 77777 5544443
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=1.2e-22 Score=183.17 Aligned_cols=187 Identities=12% Similarity=0.156 Sum_probs=147.4
Q ss_pred ccccCCCCC-EEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 2 RVVQHPVPP-YALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 2 ~l~~h~~~v-~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
.+.+|...| .++.+++++|++|+.|++|++|| .+++++..+. +|...|++++|+|++ +|++|+.|+ +++||
T Consensus 116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-----~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-----GHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-----CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 356888775 78888889999999999999999 7888886664 799999999999998 899999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEe--cCCCeEEEeecCCcEEEEeeeeeeeE------------------------
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWK--RDGSRIACGGLCGSVELFESVLKRTI------------------------ 132 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdG~~la~g~~dg~v~iwd~~~~~~~------------------------ 132 (254)
+...... .....|...|++++|+ |++++|++|+.||.|++||+..++..
T Consensus 190 ~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 190 IKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp TTTTEEE-----EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred CCCCcEE-----EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 7643321 1223467899999999 58899999999999999998654311
Q ss_pred -------------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788 133 -------------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 133 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~ 198 (254)
..+.+.++...++.+++||+.++ ..+.....+...|.+++|++++. +++++.|+++++||+.+
T Consensus 265 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 11234455667889999999987 34444444567899999999775 56678899999999998
Q ss_pred Ccee
Q psy12788 199 NLLS 202 (254)
Q Consensus 199 ~~~~ 202 (254)
++..
T Consensus 342 ~~~~ 345 (464)
T 3v7d_B 342 GELM 345 (464)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8754
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=7e-24 Score=187.31 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=134.1
Q ss_pred CCCCCEEEEecCC--eEE--EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEec
Q psy12788 6 HPVPPYALSWPAG--YIL--AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS 80 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~--s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~ 80 (254)
+...+..++|+|+ +|+ +++.|++|+||| .+++++..+. |..+|++++|+|||++||+++.+++++|+..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~ 205 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE------TRGEVKDLHFSTDGKVVAYITGSSLEVISTV 205 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSSEEEEECSSCEEEEETT
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC------CCCceEEEEEccCCceEEeccceeEEEEEec
Confidence 3445788999985 454 555799999999 7888876653 5568999999999999999998888788755
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeeeeeE-------e-------------ece
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLKRTI-------W-------------KGK 136 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~~~~-------~-------------~~~ 136 (254)
....... .....+...|.+++|+|||+++++++.|+ .+++||....... . +++
T Consensus 206 ~~~~~~~---~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 206 TGSCIAR---KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE 282 (365)
T ss_dssp TCCEEEE---ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred cCcceee---eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence 4332211 11234556899999999999999999988 5778886432110 0 233
Q ss_pred eEEEEecCCeEEEEeCCCCCceeeEE-EEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCC
Q psy12788 137 FEMIYVSPSQVLVKPLSGESKGRGVI-LKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRN 199 (254)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~ 199 (254)
+..+...++.+++||+.++ ..+. +...|...|++|+|+|+++++ +++.|++|+|||+..+
T Consensus 283 ~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4555566788999999988 3332 223456789999999998765 5788999999999754
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=6.8e-23 Score=178.34 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=142.3
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
..|..+|.+++|+|+ +|++++.|++|++|| .+++ ++..+. +|...|++++|+|+|++|++++.|+ +++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-----CCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 458999999999984 799999999999999 5555 666654 7888999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee------Ee--------------ecee
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT------IW--------------KGKF 137 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~------~~--------------~~~~ 137 (254)
|+.... +... .....+...|++++|+|||++|++|+.||.|++||...++. .. ++.+
T Consensus 80 d~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 80 TLKGRT--WKPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEETTE--EEEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred ECCCCe--eeee-EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 986432 1110 12244667899999999999999999999999999875431 10 1123
Q ss_pred EEEEecCCeEEEEeCC------------------CCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788 138 EMIYVSPSQVLVKPLS------------------GESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~------------------~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~ 198 (254)
.++...++.+++||+. .+ ..+.....+...|.+++|++++. +++++.|+++++||+.+
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG---ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT---CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchh---hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 3444557789999964 33 22222224456899999999875 56678899999999998
Q ss_pred Ccee
Q psy12788 199 NLLS 202 (254)
Q Consensus 199 ~~~~ 202 (254)
++..
T Consensus 234 ~~~~ 237 (372)
T 1k8k_C 234 KMAV 237 (372)
T ss_dssp TTEE
T ss_pred Ccee
Confidence 8754
No 50
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=3.7e-23 Score=183.69 Aligned_cols=188 Identities=15% Similarity=0.195 Sum_probs=141.7
Q ss_pred ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCC-------CEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEE
Q psy12788 2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDG-------RVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVG 69 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g-------~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~g 69 (254)
.+.+|...|.+++|+| ++|++|+.|++|++|| .++ +++..+. +|...|++++|+|+| ++|++|
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-----GHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-----CCSSCEEEEEECSSBTTEEEEE
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-----CCCCeEEEEEECcCCCCEEEEE
Confidence 3568999999999987 3799999999999999 555 4555554 788999999999998 699999
Q ss_pred eCCc-EEEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------------
Q psy12788 70 SYDN-IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK------------- 134 (254)
Q Consensus 70 s~d~-i~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~------------- 134 (254)
+.|+ +++||+....... ... ..|...|++++|+|||++|++++.||.|++||+..++....
T Consensus 151 ~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVL----TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA 226 (402)
T ss_dssp ETTSCEEEEETTTTEEEE----EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred cCCCEEEEEECCCCCccE----EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence 9996 9999976432211 111 34677899999999999999999999999999865443211
Q ss_pred -----ceeEEEE---ecCCeEEEEeCCCCCceeeE-EEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccCCc
Q psy12788 135 -----GKFEMIY---VSPSQVLVKPLSGESKGRGV-ILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHRNL 200 (254)
Q Consensus 135 -----~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~~~ 200 (254)
+.+..+. ..++++.+||+.++. ... .....+...|..++|+++++++ +++ .|+.|++||+.+++
T Consensus 227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSERQVALWDTKHLE--EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EECSTTEEEEEEECTTCCEEEEEEETTBCS--SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEcCCCcEEEEeccCCCCceEEEEcCcccc--CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 1122232 356789999998764 212 2222345679999999987655 455 58999999999876
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=1.1e-22 Score=179.00 Aligned_cols=193 Identities=10% Similarity=-0.011 Sum_probs=142.3
Q ss_pred ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EE
Q psy12788 2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IK 75 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~ 75 (254)
.+.+|...|.+++|+|+ +|++|+.|++|++|| .+++....+. .. +|...|++++|+| ++++|++++.|+ ++
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ--GM-GPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--CC-STTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee--cC-CcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 35689999999999973 699999999999999 6666665443 22 6889999999999 789999999996 99
Q ss_pred EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------ece-eEE
Q psy12788 76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGK-FEM 139 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~-~~~ 139 (254)
+||+.. ...... .....+...|++++|+|||++|++|+.||.|++||+....... .+. +.+
T Consensus 145 iwd~~~--~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 145 LRDFSG--SVIQVF-AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp EEETTS--CEEEEE-ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred EEECCC--CceEEE-eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 999763 211110 1111234679999999999999999999999999973211110 122 345
Q ss_pred EEecCCeEEEEeCCCCCce-eeEEEEecCCCceeEEEEec-CcEE-EEEECCCcEEEEeccCCce
Q psy12788 140 IYVSPSQVLVKPLSGESKG-RGVILKSQYGYEITDVAIMG-NDRY-LVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~i~~i~~~~-~~~~-~v~~~d~~i~i~dl~~~~~ 201 (254)
+...++.+++||+.+.... ..+... .+...|.+++|+| ++.+ ++++.|++++|||+.+++.
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 5566789999999873210 222222 4567899999999 7754 5677899999999998754
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.92 E-value=5.4e-23 Score=176.03 Aligned_cols=189 Identities=11% Similarity=0.154 Sum_probs=138.9
Q ss_pred ccccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCC
Q psy12788 2 RVVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYD 72 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d 72 (254)
.|.+|..+|.+++|++ ++|+|||.|++|++|| .+++ .+..+ . +|...|.+++|+|+ |++||+|+.|
T Consensus 48 ~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~----~-~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH----A-VHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE----C-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe----e-cCCCceeEEEeCcCCCCcEEEEEECC
Confidence 3678999999999974 4799999999999999 5553 33333 2 68889999999998 8999999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecC-------------CCeEEEeecCCcEEEEeeeeee----eEe-
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-------------GSRIACGGLCGSVELFESVLKR----TIW- 133 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-------------G~~la~g~~dg~v~iwd~~~~~----~~~- 133 (254)
+ +++||+..... ... .....|...|++++|+|+ +++||+|+.||.|++||+..++ ...
T Consensus 123 ~~v~~wd~~~~~~-~~~--~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~ 199 (297)
T 2pm7_B 123 GKVSVVEFKENGT-TSP--IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (297)
T ss_dssp SEEEEEEBCSSSC-BCC--EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEecCCCc-eee--eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence 6 99999864321 111 223356778999999997 5799999999999999986432 110
Q ss_pred ---------------e---ceeEEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCcEE-EEEECCCcEE
Q psy12788 134 ---------------K---GKFEMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGNDRY-LVARTPDTLL 192 (254)
Q Consensus 134 ---------------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~~~-~v~~~d~~i~ 192 (254)
. +.+.++...++.+++|++.++.......+. ..+...|.+++|+|++++ ++++.|++++
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 0 134455566788999998764210111121 234567999999998865 5578899999
Q ss_pred EEeccC
Q psy12788 193 LGDLHR 198 (254)
Q Consensus 193 i~dl~~ 198 (254)
||+...
T Consensus 280 lw~~~~ 285 (297)
T 2pm7_B 280 LWKENL 285 (297)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 999763
No 53
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=1.7e-22 Score=172.13 Aligned_cols=186 Identities=14% Similarity=0.230 Sum_probs=133.0
Q ss_pred CEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788 10 PYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE 87 (254)
Q Consensus 10 v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~ 87 (254)
...|+|+++.++++|.|++|+||| .+|++++.+.. . +|...|++++|+|+|++||+|+.|+ +++|++...+....
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~--~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM--E-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC--C-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe--c-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 356999986666667799999999 78998887753 2 6778899999999999999999996 99999765432111
Q ss_pred ecC------------------------------------ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee
Q psy12788 88 EQP------------------------------------NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT 131 (254)
Q Consensus 88 ~~~------------------------------------~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~ 131 (254)
... .....|...+..+.|+|+|++|++++.||.|++||+.+++.
T Consensus 105 ~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 000 01123456789999999999999999999999999876532
Q ss_pred Ee---------ec------------eeEEEE--ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEE-
Q psy12788 132 IW---------KG------------KFEMIY--VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVAR- 186 (254)
Q Consensus 132 ~~---------~~------------~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~- 186 (254)
.. .+ ...... ..++.+++|+..... .. ....+...+..+.+++++.+ ++++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~-~~~~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CL-SAVDAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EE-EEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---cc-ccccceeeeeeeeecccccceEEEEE
Confidence 11 00 011111 234578999998773 22 22344567999999987754 4444
Q ss_pred -CCCcEEEEeccCCcee
Q psy12788 187 -TPDTLLLGDLHRNLLS 202 (254)
Q Consensus 187 -~d~~i~i~dl~~~~~~ 202 (254)
.|++|+|||+.+++..
T Consensus 261 ~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp TTTCCEEEEETTTCCEE
T ss_pred cCCCEEEEEECCCCcEE
Confidence 5889999999987653
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.92 E-value=3e-22 Score=171.51 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=141.0
Q ss_pred cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+|...|.+++|+|+ .|++++.|++|++|| .+++ ....+. .|...+++++|+|++++|++++.|+ +++||
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-----cCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 68899999999984 799999999999999 5555 333332 6778899999999999999999985 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEec
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVS 143 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~ 143 (254)
+...... .....+...|++++|+|||++|++++.||.|++||+..++.... +.+.++...
T Consensus 170 ~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 170 LHNQTLV-----RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp TTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCcee-----eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC
Confidence 7543221 11233667899999999999999999999999999875543321 123334445
Q ss_pred CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788 144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~ 202 (254)
++.+.+|++.++. ...+ ..+...|..++|++++++ ++++.|+.+++||+.+++..
T Consensus 245 ~~~i~~~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 245 SSNVEVLHVNKPD---KYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TSCEEEEETTSSC---EEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCcEEEEECCCCC---eEEE-cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 6788999998873 3333 345678999999998764 55777999999999988754
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.92 E-value=6.5e-22 Score=169.38 Aligned_cols=214 Identities=9% Similarity=0.056 Sum_probs=151.5
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IK 75 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~ 75 (254)
..+|..+|.+++|+|+ +|++++ |++|++|| .+++ .+..+. .. +|...|++++|+|++++|++++.|+ ++
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD--CL-NRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--CS-CTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc--cc-CCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 3579999999999984 688887 99999999 5443 222222 22 5778999999999999999999986 99
Q ss_pred EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEE
Q psy12788 76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEM 139 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~ 139 (254)
+||+........ .....+...|++++|+|+|++|++++.||.|++||+..++... ++.+.+
T Consensus 123 ~~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 123 IWDLAAPTPRIK---AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEECCCC--EEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCccee---eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence 999765432111 1223456789999999999999999999999999986544322 122334
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce----------eeEeCCC
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL----------SEVLWPD 208 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~----------~~~~~~~ 208 (254)
+...++.+.+||+.++. .... -.+...+..++|+|++++ ++++.++.+++||+.+++. ..+.|.
T Consensus 200 ~~~~dg~i~~~d~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~- 274 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGR---QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA- 274 (337)
T ss_dssp EEETTSEEEEEETTTTE---EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC-
T ss_pred EEecCCcEEEEECCCCc---eEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEEC-
Confidence 44567789999998873 3322 235678999999998765 5567789999999987653 345555
Q ss_pred CCCceeEEeeCceEEEEEeC
Q psy12788 209 SGRNEKFYFDNVTVCLVFNA 228 (254)
Q Consensus 209 ~~g~~~~~~~~~~~~~~~~~ 228 (254)
++++.......+....+|+.
T Consensus 275 ~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 275 YCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp TTSSEEEEEETTSEEEEEET
T ss_pred CCCCEEEEecCCCcEEEEEC
Confidence 44444433344444445554
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=8.4e-23 Score=195.84 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=148.0
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
++.+|+..|.+++|+|+ .|++++.|++|+||| .+|+.++.+. +|...|++++|+|+|++||+|+.|+ +++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-----cCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 46789999999999984 799999999999999 7888887775 7888999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-eeEe-----------------eceeEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-RTIW-----------------KGKFEM 139 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-~~~~-----------------~~~~~~ 139 (254)
|+....... ....|...|++++|+|||++|++|+.||.|++||...+ .... ++...+
T Consensus 83 ~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 83 NYNTGEKVV-----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp ETTTCCEEE-----EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ECCCCcEEE-----EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 976544321 12346778999999999999999999999999997654 1110 122333
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec--CcE-EEEEECCCcEEEEeccCCc
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG--NDR-YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~--~~~-~~v~~~d~~i~i~dl~~~~ 200 (254)
+...++.+.+||+.++. ....+...+...+..++++| ++. +++++.++++++||+.+++
T Consensus 158 ~~~~dg~v~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp EEETTSEEEEEETTCSS--CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred EEeCCCeEEEEECCCCc--ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 44557789999998775 44555555557899999998 665 4556778899999998765
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-22 Score=176.09 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=143.3
Q ss_pred cCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 81 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~ 81 (254)
+|...|.+++|+|+ +|++++.|++|++||.+++.+..+. +|...|++++|+|++++|++++.|+ +++||+..
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLN-----FHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeecc-----CCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 47889999999984 7999999999999998888886664 7888999999999999999999985 99999754
Q ss_pred CCcceeecC--------------------------------------------------c-eecCCCCcEeEEEEecCCC
Q psy12788 82 SKSVWEEQP--------------------------------------------------N-KTIPNLYTISALSWKRDGS 110 (254)
Q Consensus 82 ~~~~~~~~~--------------------------------------------------~-~~~~~~~~i~~l~~spdG~ 110 (254)
......... . ....+...|++++|+|+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 322111000 0 1113456899999999999
Q ss_pred eEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEE
Q psy12788 111 RIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA 175 (254)
Q Consensus 111 ~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~ 175 (254)
+|++++.||.|++||+..++.... ..+.++...++.+.+||+.++ ..+.....+...|..++
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGR 337 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEE
Confidence 999999999999999865432210 013344556788999999887 44444445567899999
Q ss_pred EecCcEE-EEEECCCcEEEEeccCCc
Q psy12788 176 IMGNDRY-LVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 176 ~~~~~~~-~v~~~d~~i~i~dl~~~~ 200 (254)
|+|++++ ++++.|+.++|||+.+++
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9998765 557779999999999876
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.6e-24 Score=187.65 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=132.4
Q ss_pred CCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 6 HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
|..+|.+++|+|+ +|++|+.|++|++|| .++ +++. .+. +|...|++++|+|+|++||+|+.|+ +++||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR----TFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC----CBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE----EEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 5678999999984 799999999999999 555 4443 334 7899999999999999999999995 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee------Ee--------------eceeEE
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT------IW--------------KGKFEM 139 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~------~~--------------~~~~~~ 139 (254)
.... .+... .....|...|++++|+|||++|++|+.||.|++||+..++. .. ++.+.+
T Consensus 85 ~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 85 RPDG-TWKQT-LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp -----CCCCE-EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CCCC-ceeee-eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 6533 11110 22235677999999999999999999999999999875531 11 112334
Q ss_pred EEecCCeEEEEeCCCCCce-------------eeEEEEe-cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788 140 IYVSPSQVLVKPLSGESKG-------------RGVILKS-QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~-------------~~~~l~s-~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~ 201 (254)
+...++.+++||+..+... ....+.. .+...|.+++|+|+++ +++++.|++|+|||+.+++.
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 4455678999998532100 0111221 4456799999999886 55677899999999998864
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=1.6e-22 Score=177.96 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=141.9
Q ss_pred ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCC------EEEEeeecCCCCCCCCEEEEEECCC----C---CEEE
Q psy12788 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGR------VHRIFDYTAPHYKEREFTVACSSPS----G---QAVV 67 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~------~~~~~~~~~~~~~~~~v~~~a~sPd----g---~~la 67 (254)
.+.+|..+|.+++|+|++|++|+.|++|++|| .+++ ++..+. +|...|++++|+|+ | ++|+
T Consensus 11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-----VHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-----CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-----cCCCcEEEEEEecccccCCccccEEE
Confidence 36689999999999999999999999999999 5666 565554 78889999999999 9 9999
Q ss_pred EEeCCc-EEEEEecCCCcceeecCceecCC-----CCcEeEEEEe----cCCCe-EEEeecCCcEEEEeeee------ee
Q psy12788 68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPN-----LYTISALSWK----RDGSR-IACGGLCGSVELFESVL------KR 130 (254)
Q Consensus 68 ~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~-----~~~i~~l~~s----pdG~~-la~g~~dg~v~iwd~~~------~~ 130 (254)
+++.|+ +++|++................+ ...|++++|+ |+|++ |++|+.||.|++||+.. ++
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999996 99999875442000000111223 3789999999 99999 99999999999999876 32
Q ss_pred eEe----------------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEec---C---CCceeEEEE
Q psy12788 131 TIW----------------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ---Y---GYEITDVAI 176 (254)
Q Consensus 131 ~~~----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~---~~~i~~i~~ 176 (254)
... .+ +.++...++.+.+||+.++ ..+..... + ...|.+++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEE
Confidence 211 01 2333345678999999887 33333333 4 678999999
Q ss_pred ecCcEE-EEEECC---CcEEEEeccCCcee
Q psy12788 177 MGNDRY-LVARTP---DTLLLGDLHRNLLS 202 (254)
Q Consensus 177 ~~~~~~-~v~~~d---~~i~i~dl~~~~~~ 202 (254)
++++.+ ++++.| +.+++||+.+++..
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 998765 456667 89999999887643
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=4e-23 Score=178.55 Aligned_cols=192 Identities=12% Similarity=0.114 Sum_probs=137.1
Q ss_pred ccCCCCCEEEEecC-----CeEEEEeCCCcEEEEe-CCCC-EEEEeeecCCCCCCCCEEEE------EECCCCCEEEEEe
Q psy12788 4 VQHPVPPYALSWPA-----GYILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVA------CSSPSGQAVVVGS 70 (254)
Q Consensus 4 ~~h~~~v~~l~w~~-----~~l~s~s~D~~i~vWd-~~g~-~~~~~~~~~~~~~~~~v~~~------a~sPdg~~la~gs 70 (254)
.+|..+|.+++|+| +.|++|+.|++|++|| .+++ ++..+. +|...|+++ +|+|++++|++|+
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~s~~~~~l~~~~ 136 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-----GHKEIINAIDGIGGLGIGEGAPEIVTGS 136 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-----CCSSCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-----ecccceEEEeeccccccCCCccEEEEEe
Confidence 36889999999987 4699999999999999 6665 665553 788999999 4588999999999
Q ss_pred CCc-EEEEEecCCCcceeecCceecCCCCcEeEEE----EecCCCeEEEeecCCcEEEEeeeeeeeEe------------
Q psy12788 71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS----WKRDGSRIACGGLCGSVELFESVLKRTIW------------ 133 (254)
Q Consensus 71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~----~spdG~~la~g~~dg~v~iwd~~~~~~~~------------ 133 (254)
.|+ +++||+..............-.....|.+++ |+|+|++|++|+.||.|++||+..++...
T Consensus 137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~ 216 (357)
T 3i2n_A 137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLE 216 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEE
Confidence 996 9999976543211110000111134788998 78999999999999999999986554321
Q ss_pred ------eceeEEEEecCCeEEEEeCCCCCceeeEE--EEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccCCc
Q psy12788 134 ------KGKFEMIYVSPSQVLVKPLSGESKGRGVI--LKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 134 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~~~ 200 (254)
.+.+.++...++.+.+||+.++.....+. ....+...|.+++|+|+++ +++++.|+.++|||+.++.
T Consensus 217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 12334444556788899987653111111 1124567899999999876 4567889999999998754
No 61
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=1.9e-23 Score=186.12 Aligned_cols=188 Identities=17% Similarity=0.148 Sum_probs=136.1
Q ss_pred ccccCCCCCEEEEecC----------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEE
Q psy12788 2 RVVQHPVPPYALSWPA----------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVG 69 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~----------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~g 69 (254)
.+.+|...|.+|+|+| ++|||||.|++||||| .++.++..+. +|..++.+++|+|++. +|++|
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY-----PLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-----ECSSCEEEEEEETTEEEEEEEE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-----CCCCCcEEEEECCCCCceEEec
Confidence 3678999999999975 3799999999999999 6666665443 5778999999999875 79999
Q ss_pred eCCc-EEEEEecCCCcceeecC--------------------ceecCCCCcEeEEEEe-cCCCeEEEeecCCcEEEEeee
Q psy12788 70 SYDN-IKLFAWSPSKSVWEEQP--------------------NKTIPNLYTISALSWK-RDGSRIACGGLCGSVELFESV 127 (254)
Q Consensus 70 s~d~-i~l~d~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~s-pdG~~la~g~~dg~v~iwd~~ 127 (254)
+.|+ +++||+........... .....+...|.++.|+ |||++|++++.|+.+++||+.
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 9996 99999865443211100 0011244578899997 899999999999999999986
Q ss_pred eeeeEe------------------------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCce
Q psy12788 128 LKRTIW------------------------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEI 171 (254)
Q Consensus 128 ~~~~~~------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i 171 (254)
.++... .+.|.++...++.+++||+.++. ....+ ..++.+|
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~--~~~~~-~~~~~~V 362 (393)
T 4gq1_A 286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD--SNSIP-IQLGMPI 362 (393)
T ss_dssp ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT--CCEEE-EECSSCE
T ss_pred cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc--EEEEe-cCCCCcE
Confidence 543211 01123334457899999999884 33333 3455689
Q ss_pred eEEEEecCcEEEEEECCCcEEEEecc
Q psy12788 172 TDVAIMGNDRYLVARTPDTLLLGDLH 197 (254)
Q Consensus 172 ~~i~~~~~~~~~v~~~d~~i~i~dl~ 197 (254)
.+++|+|++++++..+++.+++|.|.
T Consensus 363 ~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 99999999999888888889988764
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.91 E-value=2e-22 Score=179.96 Aligned_cols=217 Identities=15% Similarity=0.155 Sum_probs=150.5
Q ss_pred cCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC-----------EEEEeeecCCCCCC------------CCEEEEE
Q psy12788 5 QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR-----------VHRIFDYTAPHYKE------------REFTVAC 58 (254)
Q Consensus 5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~-----------~~~~~~~~~~~~~~------------~~v~~~a 58 (254)
.|...|.+++|+| ++||+|+.|++|+||| .+++ +...+. +|. ..|++++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-----SHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-----CCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-----cccccccccccccccCceEEEE
Confidence 4578999999998 4899999999999999 5555 354554 676 7899999
Q ss_pred ECCCC--CEEEEEeCCc-EEEEEecCCCccee-----------------------------------ecCceecCCCCcE
Q psy12788 59 SSPSG--QAVVVGSYDN-IKLFAWSPSKSVWE-----------------------------------EQPNKTIPNLYTI 100 (254)
Q Consensus 59 ~sPdg--~~la~gs~d~-i~l~d~~~~~~~~~-----------------------------------~~~~~~~~~~~~i 100 (254)
|+|++ .+|++++.|+ +++|++........ ........|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 7999999996 99999754221000 0000013467789
Q ss_pred eEEEEecCCCeEEEeecCCcEEEEeeee-eeeEe-----------------------ec-eeEEEEecCCeEEEEeCCCC
Q psy12788 101 SALSWKRDGSRIACGGLCGSVELFESVL-KRTIW-----------------------KG-KFEMIYVSPSQVLVKPLSGE 155 (254)
Q Consensus 101 ~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~~-----------------------~~-~~~~~~~~~~~~~v~~~~~~ 155 (254)
++++|+|||++|++| .||.|++||+.. ++... .+ .+.++...++.+++||+.++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 999999999999999 799999999873 22211 11 33445556778999999887
Q ss_pred Cc-ee-eEEEEecCC-----------CceeEEEEecCcEEEEEECCCcEEEEeccC-Ccee-------------------
Q psy12788 156 SK-GR-GVILKSQYG-----------YEITDVAIMGNDRYLVARTPDTLLLGDLHR-NLLS------------------- 202 (254)
Q Consensus 156 ~~-~~-~~~l~s~~~-----------~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~-~~~~------------------- 202 (254)
.. .. ...+..+.+ ..|.+++|+|++++++++++++++|||+.+ ++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccc
Confidence 41 00 223322221 289999999988877665559999999986 5421
Q ss_pred -------eEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788 203 -------EVLWPDSGRNEKFYFDNVTVCLVFNA 228 (254)
Q Consensus 203 -------~~~~~~~~g~~~~~~~~~~~~~~~~~ 228 (254)
.+.|+ ++++.......+....+|+.
T Consensus 340 ~~i~~~~~~~~s-~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 340 DCIFDKFECCWN-GSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp SGGGCCCCEEEC-TTSSEEEEECSTTEEEEEET
T ss_pred cccccceEEEEC-CCCCEEEEeccCCEEEEEEc
Confidence 15676 66655555555566666766
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.3e-23 Score=182.48 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=136.3
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I 74 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i 74 (254)
.+.+|...|.+++|+| ++|++++.|++|++|| .+++ +...+ . +|...|++++|+|+|++|++|+.|+ +
T Consensus 50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~~~~~d~~i 124 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL----L-RLNRAATFVRWSPNEDKFAVGSGARVI 124 (377)
T ss_dssp CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC----C-CCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----c-ccCCceEEEEECCCCCEEEEEecCCeE
Confidence 4678999999999998 4799999999999999 5555 34332 3 7889999999999999999999996 9
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee------------------eeeeEe---
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV------------------LKRTIW--- 133 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~------------------~~~~~~--- 133 (254)
++||+..... +........+|...|++++|+|||++|++|+.||.|++||+. .++...
T Consensus 125 ~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (377)
T 3dwl_C 125 SVCYFEQEND-WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203 (377)
T ss_dssp EECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCC
T ss_pred EEEEECCccc-ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhccc
Confidence 9999765432 111001112267899999999999999999999999999984 222211
Q ss_pred ------------eceeEEEEecCCeEEEEeCCCCCceee-EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788 134 ------------KGKFEMIYVSPSQVLVKPLSGESKGRG-VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR 198 (254)
Q Consensus 134 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~ 198 (254)
++.+.++...++.+++||+.++..... +.....+...|.+++|++++++++++.++.+.+|+...
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 123445556678899999988741000 12223455689999999999999888888888887763
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=7e-23 Score=180.20 Aligned_cols=185 Identities=10% Similarity=-0.001 Sum_probs=140.2
Q ss_pred cCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEEec
Q psy12788 5 QHPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWS 80 (254)
Q Consensus 5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~ 80 (254)
+|...|.+++|+| +.|++|+.|++|++||.+++++..+. +|...|.+++|+|+++ +|++|+.|+ +++||+.
T Consensus 161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK-----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE-----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec-----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 3557899999997 47999999999999998788887765 7889999999999999 999999996 9999986
Q ss_pred CCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEee----------------------cee
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWK----------------------GKF 137 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~----------------------~~~ 137 (254)
........ .....+...|++++|+| ||++|++++.||.|++||+.+++.... +..
T Consensus 236 ~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 313 (383)
T 3ei3_B 236 NIKDKNSY--IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDL 313 (383)
T ss_dssp GCCSTTCE--EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred CCCcccce--EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCc
Confidence 53221111 22345778999999999 999999999999999999865432110 111
Q ss_pred E-EEEe--------cCCeEEEEeCCCCCceeeEEEEec-CCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788 138 E-MIYV--------SPSQVLVKPLSGESKGRGVILKSQ-YGYEITDVAIMGNDRYLVARTPDTLLLGDLHR 198 (254)
Q Consensus 138 ~-~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~-~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~ 198 (254)
. +.+. .++.+.+||+.++. ....+... +...+..++|+++++++++++|++|+|||+++
T Consensus 314 ~~~~~s~dg~~s~s~d~~i~iwd~~~~~--~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 314 IVAGRYPDDQLLLNDKRTIDIYDANSGG--LVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EEEECBCCTTTCTTCCCCEEEEETTTCC--EEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eEEEecCCcccccCCCCeEEEEecCCCc--eeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 1 2222 46789999999884 32333222 34567778999998887766799999999864
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.91 E-value=7.1e-23 Score=176.92 Aligned_cols=187 Identities=17% Similarity=0.251 Sum_probs=138.6
Q ss_pred cccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc
Q psy12788 3 VVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN 73 (254)
Q Consensus 3 l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~ 73 (254)
+.+|..+|.+++|++ +.|+|||.|++|++|| .+++ +...+ . +|...|++++|+|+ |.+||+|+.|+
T Consensus 53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~----~-~h~~~V~~v~~~p~~~g~~lasgs~D~ 127 (316)
T 3bg1_A 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH----A-GHDSSVNSVCWAPHDYGLILACGSSDG 127 (316)
T ss_dssp EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE----C-CCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc----c-CCCCceEEEEECCCCCCcEEEEEcCCC
Confidence 568999999999974 5799999999999999 5653 44333 2 78899999999998 88999999996
Q ss_pred -EEEEEecCCCcceeecCceecCCCCcEeEEEEecC-----------------CCeEEEeecCCcEEEEeeeee---eeE
Q psy12788 74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-----------------GSRIACGGLCGSVELFESVLK---RTI 132 (254)
Q Consensus 74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----------------G~~la~g~~dg~v~iwd~~~~---~~~ 132 (254)
+++||+.... .|... .....|...|.+++|+|+ +++||+|+.|+.|++||.... +..
T Consensus 128 ~i~lwd~~~~~-~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 205 (316)
T 3bg1_A 128 AISLLTYTGEG-QWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205 (316)
T ss_dssp CEEEEEECSSS-CEEEC-CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE
T ss_pred CEEEEecCCCC-Cccee-eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee
Confidence 9999986432 23211 122345678999999998 579999999999999998532 111
Q ss_pred e----------------ec----eeEEEEecCCeEEEEeCCCCCc--eeeEEEEecCCCceeEEEEecCcEE-EEEECCC
Q psy12788 133 W----------------KG----KFEMIYVSPSQVLVKPLSGESK--GRGVILKSQYGYEITDVAIMGNDRY-LVARTPD 189 (254)
Q Consensus 133 ~----------------~~----~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~ 189 (254)
. .+ .+.++...++.+++|++.+... .....+ ..+...|.+++|+|++++ ++++.|+
T Consensus 206 ~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 206 QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSS
T ss_pred eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 0 01 2345566788999999876310 011223 234678999999998864 5688899
Q ss_pred cEEEEecc
Q psy12788 190 TLLLGDLH 197 (254)
Q Consensus 190 ~i~i~dl~ 197 (254)
+++||++.
T Consensus 285 ~v~lw~~~ 292 (316)
T 3bg1_A 285 KVTLWKES 292 (316)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEC
Confidence 99999975
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=1.3e-23 Score=189.06 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=135.5
Q ss_pred CCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEEecCC
Q psy12788 7 PVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPS 82 (254)
Q Consensus 7 ~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~~~ 82 (254)
...+.+++|++ .+|++|+.|++|++||.+++++..+ . +|...|++++|+|+++ +|++|+.|+ +++||+...
T Consensus 209 ~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~----~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 209 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL----R-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS----B-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred CccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE----e-cccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 45678899987 4799999999999999777776443 3 7899999999999986 788999996 999997653
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------------ceeEEE
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------------GKFEMI 140 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------------~~~~~~ 140 (254)
...... .....|...|++++|+|||++|++|+.||.|++||+..+..... +.+...
T Consensus 284 ~~~~~~--~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 284 RGKASF--LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CSSSCC--SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cccceE--EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 322111 22345678999999999999999999999999999865432110 011111
Q ss_pred E-ec-----------CCeEEEEeCCCCCceeeEEEEecCCCceeEE-EEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 141 Y-VS-----------PSQVLVKPLSGESKGRGVILKSQYGYEITDV-AIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 141 ~-~~-----------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i-~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
. .. +..+.+||..++. ....+...+...|.++ +|+|++.++++++|++|+|||+++++.
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 1 11 1358899998884 3333334455678887 699999998888899999999998864
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-21 Score=164.51 Aligned_cols=187 Identities=9% Similarity=0.081 Sum_probs=138.9
Q ss_pred ccccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 2 RVVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
.+.+|...|.+++|.. ++|++|+.|++|++|| .+++....+. .|...|++++|+|++++|++|+.|+ +++|+
T Consensus 13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-----TGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-----ECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-----cCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 4678999999999932 5899999999999999 6776665554 5778999999999999999999996 89999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------eceeEEEEec
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGKFEMIYVS 143 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~~~~~~~~ 143 (254)
+...... .. ......|...|++++| ++++|++++.||.|++||........ .+.+.++...
T Consensus 88 ~~~~~~~-~~-~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 88 LFATSGE-DP-LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TTCCTTS-CC--CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eeecCCC-Cc-ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 7543211 11 0222346678999999 78899999999999999932111111 1223445556
Q ss_pred CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
++.+.+||... ....+...+...|..+++++++.+++++.++.+++||+.+++.
T Consensus 164 d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 164 DKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp TSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh
Confidence 77889998432 2233333366789999999988888899999999999987753
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.91 E-value=2.5e-21 Score=174.47 Aligned_cols=187 Identities=12% Similarity=0.152 Sum_probs=132.2
Q ss_pred cccCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC--CCCCEEEEEeCCc-EEEE
Q psy12788 3 VVQHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS--PSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s--Pdg~~la~gs~d~-i~l~ 77 (254)
+.+|...|.+++|+++ .|++|+.|++|++|| .+++++..+. +|...|++++|+ |++++|++|+.|+ +++|
T Consensus 158 ~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp ECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-----CCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 5689999999999975 899999999999999 7888886664 788999999998 6889999999996 9999
Q ss_pred EecCCCcceeec------------------CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----
Q psy12788 78 AWSPSKSVWEEQ------------------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----- 134 (254)
Q Consensus 78 d~~~~~~~~~~~------------------~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----- 134 (254)
|+.......... ......|...|.++ +|+|++|++|+.||.|++||+..++....
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 986543221100 00112233455544 67888888888888888888755443221
Q ss_pred -----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788 135 -----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 135 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~ 200 (254)
+.+.++...++.+++||+.++ ..+.....+...|..+.+++ ..+++++.|+++++||+.+++
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCc
Confidence 123344455677888888777 33333334556788888874 566777788888888887765
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=1.2e-21 Score=187.73 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=148.7
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.+.+|..+|.+++|+| +.|++++.|++|++|| .+|+++..+. +|...|++++|+|+|++|++|+.|+ +++|
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----cCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 3567999999999998 4799999999999999 7888887775 7888999999999999999999996 9999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe-------------------ecee
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW-------------------KGKF 137 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~-------------------~~~~ 137 (254)
++....... .....|...|++++|+| ||++|++++.||.|++||...++... ++.+
T Consensus 125 ~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 125 NWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp EGGGTSEEE----EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred ECCCCceEE----EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence 986432211 12234667899999999 89999999999999999975332110 2334
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~ 201 (254)
.++...++.+.+||+.++ ........+...|..++|+|++. +++++.|+++++||+.+++.
T Consensus 201 l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 201 MITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp EEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 455556788999999887 33333344567899999999875 55677799999999998654
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=1.5e-21 Score=168.19 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=139.2
Q ss_pred ccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EE
Q psy12788 4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IK 75 (254)
Q Consensus 4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~ 75 (254)
.+|...|.+++|+| ++|++++.|++|++|| .+++ ....+. +|...|++++|+|+++ +|++|+.|+ ++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-----ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 47999999999997 4799999999999999 5555 232222 5778999999999999 999999996 99
Q ss_pred EEEe-cCCCcceeecCceecC--CCCcEeEEEEecCCCeEEEeecCCcEEEEeeee---------eeeEee---------
Q psy12788 76 LFAW-SPSKSVWEEQPNKTIP--NLYTISALSWKRDGSRIACGGLCGSVELFESVL---------KRTIWK--------- 134 (254)
Q Consensus 76 l~d~-~~~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~---------~~~~~~--------- 134 (254)
+|++ ..... ..... |...|++++|+| +++|++++.||.|++||+.. ++....
T Consensus 83 ~wd~~~~~~~------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (342)
T 1yfq_A 83 KVDLIGSPSF------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp EECSSSSSSE------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred EEEeccCCce------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEE
Confidence 9997 54322 11233 677999999999 99999999999999999876 443211
Q ss_pred ----ceeEEEEecCCeEEEEeCCC-CCceeeEEEEecCCCceeEEEEec-CcE-EEEEECCCcEEEEeccCC
Q psy12788 135 ----GKFEMIYVSPSQVLVKPLSG-ESKGRGVILKSQYGYEITDVAIMG-NDR-YLVARTPDTLLLGDLHRN 199 (254)
Q Consensus 135 ----~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~~~i~~i~~~~-~~~-~~v~~~d~~i~i~dl~~~ 199 (254)
....++...++.+.+||+.+ +.. ........+...|.+++|+| ++. +++++.++.++|||+..+
T Consensus 156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEecCCcEEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 11133445677999999988 431 12333345567899999998 775 566788999999999776
No 71
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=1.1e-22 Score=181.14 Aligned_cols=106 Identities=8% Similarity=0.090 Sum_probs=84.8
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEe-eecCCCCCCCCEEEEEECC--------CCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIF-DYTAPHYKEREFTVACSSP--------SGQAVVVGSYDN-IKLFAWSPSKSVWE 87 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~-~~~~~~~~~~~v~~~a~sP--------dg~~la~gs~d~-i~l~d~~~~~~~~~ 87 (254)
.|++|+.|++||+|| ..+++.... ...+. +|.+.|++++|+| ||++||+|+.|+ +||||+......
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~-- 179 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI-- 179 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE--
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee--
Confidence 599999999999999 566543321 12345 8999999999998 899999999996 999998653322
Q ss_pred ecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeee
Q psy12788 88 EQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKR 130 (254)
Q Consensus 88 ~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~ 130 (254)
.....+...|.+++|+|++. +|++|+.||+|++||+.+++
T Consensus 180 ---~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 180 ---LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp ---EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred ---eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 22345778899999999985 89999999999999986543
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.4e-22 Score=177.67 Aligned_cols=189 Identities=11% Similarity=0.174 Sum_probs=139.5
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC---C-CEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-E
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD---G-RVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-I 74 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~---g-~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i 74 (254)
..|...|.+++|+|+ +|++|+.|++|++|| .. + +++..+. +|...|++++|+|+ +++|++|+.|+ +
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-----NHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-----CSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-----CCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 468899999999884 799999999999999 44 2 4664443 78899999999998 89999999996 9
Q ss_pred EEEEecCCC------cceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEee-------------
Q psy12788 75 KLFAWSPSK------SVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWK------------- 134 (254)
Q Consensus 75 ~l~d~~~~~------~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~------------- 134 (254)
++||+.... ..... .....+...|++++|+|+ +.+|++++.||.|++||+..++....
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCC
T ss_pred EEEECCCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCc
Confidence 999976543 11110 112345678999999999 78999999999999999865433211
Q ss_pred ---------c-eeEEEEecCC---eEEEEeCCCCCceeeEEEEe-cCCCceeEEEEec-CcE-EEEEECCCcEEEEeccC
Q psy12788 135 ---------G-KFEMIYVSPS---QVLVKPLSGESKGRGVILKS-QYGYEITDVAIMG-NDR-YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 135 ---------~-~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~-~~~-~~v~~~d~~i~i~dl~~ 198 (254)
+ .+.++...++ .+++||+.++. ....... .+...|.+++|+| ++. +++++.|++++|||+.+
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 0 1233334455 88999998753 1122222 3556899999998 554 56678899999999998
Q ss_pred Cce
Q psy12788 199 NLL 201 (254)
Q Consensus 199 ~~~ 201 (254)
++.
T Consensus 295 ~~~ 297 (416)
T 2pm9_A 295 AEQ 297 (416)
T ss_dssp CCE
T ss_pred Ccc
Confidence 764
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=3.3e-21 Score=171.28 Aligned_cols=182 Identities=12% Similarity=0.169 Sum_probs=140.1
Q ss_pred cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS 80 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~ 80 (254)
.|...|.+++|+|+ +|++|+.|+.|++|| .+++.+..+. +|...|.+++| ++++|++|+.|+ +++||+.
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-----GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-----CCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 37889999999984 799999999999999 7788887664 78899999999 567999999996 8999976
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEEEe--
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMIYV-- 142 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~~~-- 142 (254)
...... .....|...|.+++|+|||++|++|+.||.|++||+..++.... +...+...
T Consensus 205 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 205 IANHQI----GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp SSSCEE----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred cCccee----eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence 333211 22345678999999999999999999999999999876543321 11122222
Q ss_pred -cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-E--CCCcEEEEeccCCce
Q psy12788 143 -SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-R--TPDTLLLGDLHRNLL 201 (254)
Q Consensus 143 -~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~--~d~~i~i~dl~~~~~ 201 (254)
.++.+.+||+.++. ....+ .++..|.+++|+++++++++ + .|+.++|||+.+++.
T Consensus 281 s~d~~i~i~d~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 281 TMDKQIHFWNAATGA--RVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp TTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCC--EEEEE--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 37899999999884 22222 34568999999998876654 2 589999999998654
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.90 E-value=7.3e-22 Score=170.61 Aligned_cols=185 Identities=8% Similarity=0.144 Sum_probs=136.9
Q ss_pred ccCCCCCEEEEecCC---eEEEEeC---CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC---CCEEEEEeCCc
Q psy12788 4 VQHPVPPYALSWPAG---YILAAGS---DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS---GQAVVVGSYDN 73 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~---~l~s~s~---D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd---g~~la~gs~d~ 73 (254)
.+|...|.+++|+|+ ++++++. |++|++|| .+++....... +|...|++++|+|+ |++|++|+.|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 469999999999983 4556666 99999999 67766544322 57789999999999 79999999996
Q ss_pred -EEEEEecCCCcceeecCceecCCCCcEeEEE------EecCCCeEEEeecCCcEEEEeeeeee-eE-------------
Q psy12788 74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALS------WKRDGSRIACGGLCGSVELFESVLKR-TI------------- 132 (254)
Q Consensus 74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~------~spdG~~la~g~~dg~v~iwd~~~~~-~~------------- 132 (254)
+++||+....... .....|...|+++. |+|||++|++|+.||.|++||+..++ ..
T Consensus 91 ~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 91 NLHIWNLEAPEMPV----YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp CEEEECTTSCSSCS----EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred eEEEEeCCCCCccE----EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 9999976543111 12234677899995 57899999999999999999986543 11
Q ss_pred -----------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec---CcE-EEEEECCCcEEEEecc
Q psy12788 133 -----------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG---NDR-YLVARTPDTLLLGDLH 197 (254)
Q Consensus 133 -----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~---~~~-~~v~~~d~~i~i~dl~ 197 (254)
.++.+.++...++.+++||+.++ .... ...+...|.+++|+| ++. +++++.|+.+++||+.
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM---ALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---EEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---ceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 11223444455789999999987 3332 234567899999998 554 5667889999999998
Q ss_pred CCc
Q psy12788 198 RNL 200 (254)
Q Consensus 198 ~~~ 200 (254)
+++
T Consensus 243 ~~~ 245 (357)
T 3i2n_A 243 TQH 245 (357)
T ss_dssp EEE
T ss_pred CCC
Confidence 765
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-21 Score=166.69 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=145.6
Q ss_pred ccccCCCCCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEe
Q psy12788 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~ 79 (254)
.+.+|...|.+++|+++.|++++.|++|++|| .++....+. .|...+.+++|+| ++++|++++.|+ +++||.
T Consensus 99 ~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQ-----AHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEE-----CCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred chhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecc-----cCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 35679999999999989999999999999999 666665554 6888999999998 999999999996 999992
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec------e---------eEEEEecC
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG------K---------FEMIYVSP 144 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~------~---------~~~~~~~~ 144 (254)
. ... . .....+...|++++|+|+|+ +++++.||.|++||+..++....- . ..++...+
T Consensus 173 ~--~~~--~--~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d 245 (313)
T 3odt_A 173 D--KVI--K--TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED 245 (313)
T ss_dssp T--EEE--E--EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETT
T ss_pred C--ceE--E--EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecC
Confidence 1 111 1 12223667899999999999 999999999999998755443210 0 23344557
Q ss_pred CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
+.+++||+.++. .......+...|..++|++++++++++.|+.+++||+.+++.
T Consensus 246 g~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 246 RTVRIWSKENGS---LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp SEEEEECTTTCC---EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred CEEEEEECCCCc---eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 789999999884 333334556789999999998999999999999999998875
No 76
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.90 E-value=3.2e-21 Score=170.23 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=124.6
Q ss_pred cccCCCCCEEEEecCCeEEEE-----------eCCCcEEEEe-CCC-CEEEEeee---c-CCCCCCCCEEEEEECCCCCE
Q psy12788 3 VVQHPVPPYALSWPAGYILAA-----------GSDRIVTIYE-SDG-RVHRIFDY---T-APHYKEREFTVACSSPSGQA 65 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~~l~s~-----------s~D~~i~vWd-~~g-~~~~~~~~---~-~~~~~~~~v~~~a~sPdg~~ 65 (254)
|.+|...|.+++++++.+++| +.|+++|+|+ ..+ ..+..... . .. .++..+.+++|||||++
T Consensus 69 l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 69 LEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAST-NADDYTKLVYISREGTV 147 (365)
T ss_dssp CCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCC-CTTCCEEEEEECTTSSC
T ss_pred ccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecC-CcccCEEEEEEcCCCCE
Confidence 457888899999998877765 4578899998 332 22222211 1 11 34456899999999999
Q ss_pred EEEEe--CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----c--
Q psy12788 66 VVVGS--YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----G-- 135 (254)
Q Consensus 66 la~gs--~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----~-- 135 (254)
+|+++ .|+ +||||+..... ...+.+...|++|+|||||++|++++.+ .+.+|+...++.... .
T Consensus 148 la~as~~~d~~i~iwd~~~~~~------~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTE------KFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEE------EEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred EEEEECCCCCEEEEeECCCCcE------EEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence 87654 665 99999654332 2334567789999999999999999855 555666544432211 0
Q ss_pred -eeEEEEecCC--------------eEEEEeCCCCCceeeE-EE--EecCCCceeEEEEecCcEEE-EEECCCcEEEEec
Q psy12788 136 -KFEMIYVSPS--------------QVLVKPLSGESKGRGV-IL--KSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDL 196 (254)
Q Consensus 136 -~~~~~~~~~~--------------~~~v~~~~~~~~~~~~-~l--~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl 196 (254)
...+.|++++ .+..|++.... ... .. ...+...|++++|+|+++++ +|+.|++|+|||+
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN--TSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE--EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CEEEEEEcCCCCEEEEEecCCcceeEEeecccccce--ecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 1122333333 34455655442 111 11 12344579999999998765 5778999999999
Q ss_pred cCCceee
Q psy12788 197 HRNLLSE 203 (254)
Q Consensus 197 ~~~~~~~ 203 (254)
.++++..
T Consensus 299 ~~~~~~~ 305 (365)
T 4h5i_A 299 KDLSMSK 305 (365)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9987643
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=170.53 Aligned_cols=190 Identities=11% Similarity=0.157 Sum_probs=142.1
Q ss_pred ccccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCC
Q psy12788 2 RVVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYD 72 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d 72 (254)
.+.+|..+|.+++|++ ++|++|+.|++|++|| .+++ .+..+ . .|...|++++|+|+ +++|++++.|
T Consensus 50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH----A-VHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE----C-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee----c-CCCcceEEEEeCCCCCCCEEEEecCC
Confidence 3568999999999973 5799999999999999 6665 44333 2 68889999999999 9999999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-------------CCCeEEEeecCCcEEEEeeeeee----eEe-
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-------------DGSRIACGGLCGSVELFESVLKR----TIW- 133 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------dG~~la~g~~dg~v~iwd~~~~~----~~~- 133 (254)
+ +++||+........ .....+...|++++|+| |+++|++|+.||.|++||+..++ ...
T Consensus 125 ~~i~v~d~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp SEEEEEECCTTSCCCE---EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEecCCCCceee---EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 6 99999865422111 12335677899999999 79999999999999999986432 110
Q ss_pred ---------------e---ceeEEEEecCCeEEEEeCCCCCceeeEEEEec--CCCceeEEEEecCcEE-EEEECCCcEE
Q psy12788 134 ---------------K---GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ--YGYEITDVAIMGNDRY-LVARTPDTLL 192 (254)
Q Consensus 134 ---------------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~~~i~~i~~~~~~~~-~v~~~d~~i~ 192 (254)
. +.+.++...++.+++||+.++.......+... +...|.+++|+|++++ ++++.|+.++
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 1 34445555677899999987631112222222 4568999999998865 5577899999
Q ss_pred EEeccCC
Q psy12788 193 LGDLHRN 199 (254)
Q Consensus 193 i~dl~~~ 199 (254)
|||+..+
T Consensus 282 iw~~~~~ 288 (379)
T 3jrp_A 282 LWKENLE 288 (379)
T ss_dssp EEEEEET
T ss_pred EEeCCCC
Confidence 9999854
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=2.6e-21 Score=173.76 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=143.5
Q ss_pred cccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788 3 VVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS 80 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~ 80 (254)
+.+|...|.+++|+++.|++|+.|++|++|| .+++++..+. +|...|.+++|+| .++++|+.|+ +++||+.
T Consensus 169 ~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 169 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-----HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp ECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC-----CCCSCEEEEECCT--TEEEEEETTSCEEEEECS
T ss_pred EcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc-----CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC
Confidence 5689999999999888999999999999999 7888887664 7888999999975 5899999996 9999976
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCCe
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPSQ 146 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~~ 146 (254)
........ .....|...|++++| +|++|++|+.||.|++||+.+++... .+.+.++...++.
T Consensus 242 ~~~~~~~~--~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~ 317 (435)
T 1p22_A 242 SPTDITLR--RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317 (435)
T ss_dssp SSSCCEEE--EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred CCCCceee--eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCe
Confidence 54332111 123456678999999 89999999999999999986554332 2234455667889
Q ss_pred EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788 147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~ 200 (254)
+++||+.++. .+.....+...|.++++.+ ..+++++.|++|+|||+.+++
T Consensus 318 i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 318 IRLWDIECGA---CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEEETTTCC---EEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHT
T ss_pred EEEEECCCCC---EEEEEeCCcCcEEEEEecC-CEEEEEeCCCcEEEEECCCCC
Confidence 9999999883 3333344566899999953 567788899999999998764
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.8e-22 Score=193.76 Aligned_cols=184 Identities=11% Similarity=0.022 Sum_probs=138.4
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
.+|...|.+++|+|+ +||+|+.|++|+||| ..+++...+ .|..+|++++|+| |++||+++.|+ +++||+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC------SSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence 479999999999984 799999999999999 444444222 4677899999999 88999999996 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------------------
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------------------------- 133 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------------------------- 133 (254)
...... ..+.+...|++++|+|||++||+|+.||.|++||+..++...
T Consensus 87 ~~~~~~------~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 87 YSQKVL------TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp TTCSEE------EEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred CCCcEE------EEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 654321 223355789999999999999999999999999986544310
Q ss_pred --eceeEEEEecCCeEEEEeCCCCCceeeEEEEec-----------------CCCceeEEEEecCcE-EEEEECCCcEEE
Q psy12788 134 --KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ-----------------YGYEITDVAIMGNDR-YLVARTPDTLLL 193 (254)
Q Consensus 134 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----------------~~~~i~~i~~~~~~~-~~v~~~d~~i~i 193 (254)
+....++...++.+ +||+.++. ....+..+ +...|++++|+|++. +++++.|++|+|
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 01123334456778 99998873 22222211 124699999999886 566888999999
Q ss_pred EeccCCceee
Q psy12788 194 GDLHRNLLSE 203 (254)
Q Consensus 194 ~dl~~~~~~~ 203 (254)
||+.++++..
T Consensus 238 Wd~~~g~~~~ 247 (902)
T 2oaj_A 238 WDANSGHMIM 247 (902)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCcEEE
Confidence 9999887643
No 80
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.3e-22 Score=189.88 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=141.1
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN- 73 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~- 73 (254)
.+.+|..+|.+++|+| ++|++|+.|++|++|| . +++++..+. +|...|++++|+|+ |++|++|+.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 3679999999999997 4799999999999999 4 334554443 78899999999998 99999999996
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeee----Ee--------------
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRT----IW-------------- 133 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~----~~-------------- 133 (254)
+++||+.... +... .....|...|++++|+|+ |+++++|+.||.|++||+..+.. ..
T Consensus 79 I~vwd~~~~~--~~~~-~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 79 VLIWKEENGR--WSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp EEEEEEETTE--EEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred EEEEECCCCc--cccc-ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 9999986532 2110 223346779999999999 99999999999999999865411 00
Q ss_pred -------------eceeEEEEecCCeEEEEeCCCCCceee-EEEEecCCCceeEEEEecC---cEE-EEEECCCcEEEEe
Q psy12788 134 -------------KGKFEMIYVSPSQVLVKPLSGESKGRG-VILKSQYGYEITDVAIMGN---DRY-LVARTPDTLLLGD 195 (254)
Q Consensus 134 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~~~i~~i~~~~~---~~~-~v~~~d~~i~i~d 195 (254)
++.+.++...++.+++||+.++..... ......+...|.+++|+|+ +.+ ++++.|++++|||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 133445556678899999987642111 1112345668999999998 654 5677899999999
Q ss_pred ccCC
Q psy12788 196 LHRN 199 (254)
Q Consensus 196 l~~~ 199 (254)
+.++
T Consensus 236 ~~~~ 239 (753)
T 3jro_A 236 QDNE 239 (753)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 9886
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.8e-22 Score=192.97 Aligned_cols=241 Identities=14% Similarity=0.058 Sum_probs=160.4
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEE--EEeeec-----CCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVH--RIFDYT-----APHYKEREFTVACSSPSGQAVVVGSYD 72 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~--~~~~~~-----~~~~~~~~v~~~a~sPdg~~la~gs~d 72 (254)
|.+|...+..++|+|+ .|+||+.|++||+|| ..|... ..+... .. +|...|++++|+|||++||+|+.|
T Consensus 431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~-~h~~~V~svafspdg~~LAsgs~D 509 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK-AKELAVDKISFAAETLELAVSIET 509 (902)
T ss_dssp CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC-SSSCCEEEEEEETTTTEEEEEETT
T ss_pred ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC-CCCCceeEEEecCCCCeEEEEecC
Confidence 5677778888888884 799999999999999 555321 011100 12 577899999999999999999999
Q ss_pred c-EEEEEecCCCcc-----------------------------------------eeecCceecCCCCcEeEEEEecCCC
Q psy12788 73 N-IKLFAWSPSKSV-----------------------------------------WEEQPNKTIPNLYTISALSWKRDGS 110 (254)
Q Consensus 73 ~-i~l~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~~i~~l~~spdG~ 110 (254)
+ ++||++...+.. ++.. .....|...|++|+|||||
T Consensus 510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~l~~h~~~V~svafSpdG- 587 (902)
T 2oaj_A 510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS-TAVHANKGKTSAINNSNIG- 587 (902)
T ss_dssp SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE-EEECCCSCSEEEEEECBTS-
T ss_pred cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee-EEEEcCCCcEEEEEecCCc-
Confidence 6 999998753210 0000 1112367899999999999
Q ss_pred eEEEeecCCcEEEEeeeeeeeEe--------------------e----------ceeEEEEecCCeEEEEeC---CCCCc
Q psy12788 111 RIACGGLCGSVELFESVLKRTIW--------------------K----------GKFEMIYVSPSQVLVKPL---SGESK 157 (254)
Q Consensus 111 ~la~g~~dg~v~iwd~~~~~~~~--------------------~----------~~~~~~~~~~~~~~v~~~---~~~~~ 157 (254)
+||+|+.||+|++||+..++.+. . +++.++...++.+++|++ .+|.
T Consensus 588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~- 666 (902)
T 2oaj_A 588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK- 666 (902)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC-
T ss_pred EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc-
Confidence 99999999999999976543321 0 122333445678999998 5553
Q ss_pred eeeEEEEec----CCCceeEEE-Eec---------------------CcEEEEEECCCcEEEEeccCCceeeEeCCCCCC
Q psy12788 158 GRGVILKSQ----YGYEITDVA-IMG---------------------NDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGR 211 (254)
Q Consensus 158 ~~~~~l~s~----~~~~i~~i~-~~~---------------------~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g 211 (254)
....+..+ +...|.+|. |+. .+.++++++++.++||++.++|+....|. ..-
T Consensus 667 -~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~-~~~ 744 (902)
T 2oaj_A 667 -FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFK-YPL 744 (902)
T ss_dssp -EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECS-SCE
T ss_pred -EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCccccceeeEcc-cce
Confidence 22333222 145677777 541 13456666799999999999998777666 211
Q ss_pred c--ee----------EEeeCceEEEEEeCCeeEEEEeecCeeeeeeecCC
Q psy12788 212 N--EK----------FYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPT 249 (254)
Q Consensus 212 ~--~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 249 (254)
. .. |.-++..+..+.+.|++.+...-.-+.|.+.+.+.
T Consensus 745 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 745 AATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred eeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 1 11 11223445555566778777777666676666544
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=1.5e-21 Score=175.53 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=142.1
Q ss_pred cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CC----------CCEEEEeeecCCCCCCCCEEEEEECCCCC-EEE
Q psy12788 3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SD----------GRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVV 67 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~----------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la 67 (254)
+..|...|.+++|+|+ +|++++.|++|++|| .. ++.+..+. +|...|++++|+|+++ +|+
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEECTTSTTEEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeCCCCCCeEE
Confidence 4679999999999984 699999999999999 43 45554443 7888999999999998 999
Q ss_pred EEeCCc-EEEEEecCCCcc-eeec-CceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeee---eeEe-------
Q psy12788 68 VGSYDN-IKLFAWSPSKSV-WEEQ-PNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLK---RTIW------- 133 (254)
Q Consensus 68 ~gs~d~-i~l~d~~~~~~~-~~~~-~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~---~~~~------- 133 (254)
+|+.|+ +++|++...... .... ......|...|.+++|+| ++.+||+++.||.|++||++.+ +...
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999996 999997652221 1100 112235667899999999 7889999999999999998754 1111
Q ss_pred ---------ece-eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccC
Q psy12788 134 ---------KGK-FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 134 ---------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~ 198 (254)
.+. +.++...++.+.+||+.+.. ..+.....+...|.+++|+|+++ +++++.|++|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 011 23455667899999998743 33333344567899999999773 66788899999999987
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=177.45 Aligned_cols=192 Identities=11% Similarity=0.106 Sum_probs=131.9
Q ss_pred CCCEEEEecCC----eEEEEeCCCcEEEEe-CCCCEEEE------------------------------------eeecC
Q psy12788 8 VPPYALSWPAG----YILAAGSDRIVTIYE-SDGRVHRI------------------------------------FDYTA 46 (254)
Q Consensus 8 ~~v~~l~w~~~----~l~s~s~D~~i~vWd-~~g~~~~~------------------------------------~~~~~ 46 (254)
..|.+++|+|+ .|++++.|++|++|| .+++.... .....
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 88999999874 599999999999999 44332100 00002
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeec---CceecCCCCcEeEEEEecCC-CeEEEeecCCcE
Q psy12788 47 PHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ---PNKTIPNLYTISALSWKRDG-SRIACGGLCGSV 121 (254)
Q Consensus 47 ~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~---~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v 121 (254)
. +|...|++++|+|+|++|++| .|+ +++||+.......... ......|...|++++|+|+| ++||+|+.||.|
T Consensus 174 ~-~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 174 N-AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp S-CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred c-CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 3 688999999999999999999 575 9999975322211100 00123466789999999999 999999999999
Q ss_pred EEEeeeeeee------Ee--------------------------eceeEEEEecCCeEEEEeCCC-CCceeeEEEEecCC
Q psy12788 122 ELFESVLKRT------IW--------------------------KGKFEMIYVSPSQVLVKPLSG-ESKGRGVILKSQYG 168 (254)
Q Consensus 122 ~iwd~~~~~~------~~--------------------------~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~ 168 (254)
++||+..++. .. ++.+.++... +.+++||+.+ +. ....+.. +.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~-~~ 327 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR--PVETYQV-HE 327 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS--CSCCEES-CG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc--ccceeec-cc
Confidence 9999865442 01 1123334444 7899999986 42 1122221 11
Q ss_pred C---------------ceeEEEEecCcEEE-EEECCCcEEEEeccCCceeeEe
Q psy12788 169 Y---------------EITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLSEVL 205 (254)
Q Consensus 169 ~---------------~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~~~~ 205 (254)
. .+..++|+|+++++ +++.|+.|+|||+.+++...+.
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE 380 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee
Confidence 1 13349999988654 5677999999999999875443
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.3e-20 Score=161.46 Aligned_cols=190 Identities=11% Similarity=0.136 Sum_probs=141.7
Q ss_pred ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----c
Q psy12788 2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----N 73 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----~ 73 (254)
.+.+|...|.+++|+| ++|++++.|++|++|| .+++++..+. +...+.+++|+|+|++|++++.+ +
T Consensus 69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 3567999999999997 4799999999999999 7888887664 45689999999999999999887 5
Q ss_pred -EEEEEecCCCcceeec-----C-ceecCCCC--cEeEEEEecCCCeEEEeecCCcEEEEeeee-eeeEe----------
Q psy12788 74 -IKLFAWSPSKSVWEEQ-----P-NKTIPNLY--TISALSWKRDGSRIACGGLCGSVELFESVL-KRTIW---------- 133 (254)
Q Consensus 74 -i~l~d~~~~~~~~~~~-----~-~~~~~~~~--~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~~---------- 133 (254)
+++||+.......... . .....+.. .+.+++|+|||++|++|+.||.|++||+.. ++...
T Consensus 143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 8999986543221100 0 01112223 899999999999999999999999999865 32221
Q ss_pred ------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCC--------------cEE
Q psy12788 134 ------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPD--------------TLL 192 (254)
Q Consensus 134 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~--------------~i~ 192 (254)
++.+.++...++.+.+||+.++. ....+ .....+..+.|++++++++ ++.++ .++
T Consensus 223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEE--ECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred EEEECCCCCEEEEecCCceEEEEECCCCc--eeeee--cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 12234455567889999999874 22222 2567899999999887655 55566 789
Q ss_pred EEeccCCce
Q psy12788 193 LGDLHRNLL 201 (254)
Q Consensus 193 i~dl~~~~~ 201 (254)
+||+.+++.
T Consensus 299 ~~d~~~~~~ 307 (369)
T 3zwl_B 299 FYHKIFEEE 307 (369)
T ss_dssp EEETTTCCE
T ss_pred EEecCCCcc
Confidence 999987764
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-20 Score=170.35 Aligned_cols=189 Identities=6% Similarity=0.016 Sum_probs=138.7
Q ss_pred cCCCCCEEEEecCC--eE-EEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788 5 QHPVPPYALSWPAG--YI-LAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF 77 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~ 77 (254)
.|...|.+++|+|+ .| ++++.|++|++|| . ++++++.+... .|...|++++|+|+|++|++|+.++ +++|
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 56778999999984 54 8999999999999 6 78888776421 3567899999999999999999986 8888
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecC---CCeEEEeecCCcEEEEeeeeeeeEe----------------eceeE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRD---GSRIACGGLCGSVELFESVLKRTIW----------------KGKFE 138 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---G~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~ 138 (254)
++.......... .....|...|++++|+|| |++|++|+.|+.|++||+..++... ++.+.
T Consensus 177 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLL 255 (450)
T ss_dssp ETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEE
T ss_pred ecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEE
Confidence 864322210000 122346678999999999 9999999999999999986543221 13344
Q ss_pred EEEecCCeEEEEeCCCCCceeeEEEEe------------------------cCCCceeEEEEecCcEEEE-EE-CCCcEE
Q psy12788 139 MIYVSPSQVLVKPLSGESKGRGVILKS------------------------QYGYEITDVAIMGNDRYLV-AR-TPDTLL 192 (254)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s------------------------~~~~~i~~i~~~~~~~~~v-~~-~d~~i~ 192 (254)
++...++.+++||+.++. ....+.. .....|..|.+++++++++ ++ .++.++
T Consensus 256 ~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEESSSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEeCCCeEEEEECCCCc--EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 555667899999999884 2222221 1234688999999887654 55 688999
Q ss_pred EEec--cCC
Q psy12788 193 LGDL--HRN 199 (254)
Q Consensus 193 i~dl--~~~ 199 (254)
|||+ .++
T Consensus 334 iw~~~~~~~ 342 (450)
T 2vdu_B 334 ILEMSEKQK 342 (450)
T ss_dssp EEEECSSST
T ss_pred EEEeccCCC
Confidence 9999 544
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.8e-21 Score=171.80 Aligned_cols=187 Identities=13% Similarity=0.127 Sum_probs=140.0
Q ss_pred cccCCCCCEEEEecCCeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 3 VVQHPVPPYALSWPAGYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
+.+|...|.+++|+++.|++++.|++|++|| . .+..+..+. +|...|.+++|+|+|++|++|+.|+ +++||.
T Consensus 172 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 172 MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC
Confidence 5589999999999999999999999999999 4 456665554 7889999999999999999999996 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCe-EEEee--cCCcEEEEeeeeeeeEe---------------eceeEEEE
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGG--LCGSVELFESVLKRTIW---------------KGKFEMIY 141 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~g~--~dg~v~iwd~~~~~~~~---------------~~~~~~~~ 141 (254)
....... ....+...|.+++|+|+|.. +++|+ .||.|++||+.+++... .+.+.++.
T Consensus 247 ~~~~~~~-----~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 247 RSSIPKF-----TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp TCSSEEE-----EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred CCCCccE-----EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEE
Confidence 6433221 22346678999999998755 55544 79999999986554332 12233333
Q ss_pred e--cCCeEEEEeCCCCCceeeEEE--EecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCcee
Q psy12788 142 V--SPSQVLVKPLSGESKGRGVIL--KSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 142 ~--~~~~~~v~~~~~~~~~~~~~l--~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~ 202 (254)
. .++.+.+|++.++. .... ...+...|..++|+++++++ +++.|+++++||+.+++..
T Consensus 322 ~g~~dg~i~v~~~~~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSSG---LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp ECTTTCEEEEEEEETTE---EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred eecCCCcEEEEecCCcc---ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 3 47899999998863 2222 23456789999999988655 5677999999999988754
No 87
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-20 Score=164.35 Aligned_cols=187 Identities=12% Similarity=0.112 Sum_probs=136.9
Q ss_pred cCCCCCEEEEecCC---eEEEEeCCCcEEEEeC----C-CC------EEEEeeecCCCC------CCCCEEEEEECCCCC
Q psy12788 5 QHPVPPYALSWPAG---YILAAGSDRIVTIYES----D-GR------VHRIFDYTAPHY------KEREFTVACSSPSGQ 64 (254)
Q Consensus 5 ~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd~----~-g~------~~~~~~~~~~~~------~~~~v~~~a~sPdg~ 64 (254)
.|..+|.+++|+|+ +|++|+.|++|++||. . ++ ....+..... + |...|++++|+|+|+
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA-LSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC-CC------CBCEEEEEECTTSS
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc-ccccccCCCCceEEEEEcCCCC
Confidence 45689999999984 8999999999999985 4 44 3444443222 2 466999999999999
Q ss_pred EEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------
Q psy12788 65 AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------- 134 (254)
Q Consensus 65 ~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------- 134 (254)
+||+|+.|+ +++|+. . .... .....|...|++++|+|+|++|++++.||.|++||+..++....
T Consensus 122 ~l~~~~~dg~i~i~~~-~-~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-T-GALL----NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp EEEEEETTSCEEEEET-T-SCEE----EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred EEEEEeCCCeEEEEeC-C-CCee----eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 999999996 999992 2 2111 12234667899999999999999999999999999865543321
Q ss_pred ---------------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEE
Q psy12788 135 ---------------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLL 192 (254)
Q Consensus 135 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~ 192 (254)
....++...++.+.+||+.++. .......+...|..++|+++++ +++++.|+.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT---PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS---CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc---eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 0112333456688999998874 3333334567899999999875 55677799999
Q ss_pred EEeccCCce
Q psy12788 193 LGDLHRNLL 201 (254)
Q Consensus 193 i~dl~~~~~ 201 (254)
+||+.+++.
T Consensus 273 i~d~~~~~~ 281 (425)
T 1r5m_A 273 IWHGGNGNS 281 (425)
T ss_dssp EECSSSBSC
T ss_pred EEECCCCcc
Confidence 999988753
No 88
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=4.4e-20 Score=165.92 Aligned_cols=226 Identities=11% Similarity=0.178 Sum_probs=162.9
Q ss_pred ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
.+.+|...|.+++|+++.|++|+.|++|++|| .+++++..+. +|...|.+++|+ ++++++|+.|+ +++||.
T Consensus 154 ~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-----GHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp ECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred EEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEEC-----CCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 35689999999999999999999999999999 7888886664 788999999995 57899999996 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCC
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPS 145 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~ 145 (254)
....... ....|...|++++| +|+++++|+.||.|++||..+++... ++.+.++...++
T Consensus 227 ~~~~~~~-----~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 299 (445)
T 2ovr_B 227 ETGQCLH-----VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 299 (445)
T ss_dssp SSCCEEE-----EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred CCCcEEE-----EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence 6544322 12346678999999 89999999999999999986554332 223445556688
Q ss_pred eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCC-CCCCcee--EEeeCceE
Q psy12788 146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWP-DSGRNEK--FYFDNVTV 222 (254)
Q Consensus 146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~-~~~g~~~--~~~~~~~~ 222 (254)
.+++||+.++. .+.....+...+..+.+++ ..+++++.|+++++||+.+++.....-. ....... ..+++..+
T Consensus 300 ~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 375 (445)
T 2ovr_B 300 SIRVWDVETGN---CIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375 (445)
T ss_dssp CEEEEETTTCC---EEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE
T ss_pred eEEEEECCCCC---EEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEE
Confidence 99999999884 3333334556788888874 5778888999999999998875433211 0011111 22344444
Q ss_pred EEEEeCCeeEEEEeecCeeeeee
Q psy12788 223 CLVFNAGELSIIEYGNNEILTCV 245 (254)
Q Consensus 223 ~~~~~~g~~~~~~~~~~~~~~~~ 245 (254)
...-.+|.+.+++....+.+..+
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEeCCCeEEEEECCCCceeeee
Confidence 44444466777776666655554
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.6e-22 Score=185.96 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=135.3
Q ss_pred cccCCCCCEEEEecCC--------eEEEEeCCCcEEEEe-CCCCEE----EEe---eecCCCCCCCCEEEEEECCCCCEE
Q psy12788 3 VVQHPVPPYALSWPAG--------YILAAGSDRIVTIYE-SDGRVH----RIF---DYTAPHYKEREFTVACSSPSGQAV 66 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--------~l~s~s~D~~i~vWd-~~g~~~----~~~---~~~~~~~~~~~v~~~a~sPdg~~l 66 (254)
+.+|...|..|+|+|+ +||++|.|++|++|| ..+.+. ..+ ...+. +|...|++++|+|++ .|
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eE
Confidence 3567889999999974 799999999999999 444311 000 01123 788899999999965 89
Q ss_pred EEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEE--EEecCC-CeEEEeecCCcEEEEeeeeeeeE----ee----
Q psy12788 67 VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL--SWKRDG-SRIACGGLCGSVELFESVLKRTI----WK---- 134 (254)
Q Consensus 67 a~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l--~~spdG-~~la~g~~dg~v~iwd~~~~~~~----~~---- 134 (254)
|+|+.|+ +++||+....... .....|...|++| +|+|+| ++||+|+.||+|+|||++.++.. ..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~----~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~ 356 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPS----FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS 356 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCS----EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred EEEeCCCEEEEEECCCCCCce----EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence 9999996 9999975422110 1234577899999 679998 89999999999999998653211 00
Q ss_pred ----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCC
Q psy12788 135 ----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRN 199 (254)
Q Consensus 135 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~ 199 (254)
+...++...++.+++||+.++. ....+.. +...|++|+|+|++++ ++|+.|++++|||+..+
T Consensus 357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--~~~~l~g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--AVHPLVS-RETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCCEEEETTTTEEEEECSSSEEEEEETTCTT--CCEEEEE-CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred cccceEeCCCcCeEEEeCCCCcEEEEECcccc--cceeeec-CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 1122233345679999998874 3233433 5678999999998864 66888999999997643
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.3e-22 Score=186.30 Aligned_cols=204 Identities=9% Similarity=-0.013 Sum_probs=133.3
Q ss_pred EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC------CCEEEEEeCCc-EEEEEecCCCcc---e-e
Q psy12788 20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS------GQAVVVGSYDN-IKLFAWSPSKSV---W-E 87 (254)
Q Consensus 20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd------g~~la~gs~d~-i~l~d~~~~~~~---~-~ 87 (254)
|++++.|++|+||| ..+++.......+. .|...|.+++|+|+ +.+||+|+.|+ ++|||+...... . .
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 44566889999999 55543211111112 45678999999997 57999999996 999998643211 0 0
Q ss_pred e-cCc-eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee-e--Ee----------------ec-eeEEEEecCC
Q psy12788 88 E-QPN-KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR-T--IW----------------KG-KFEMIYVSPS 145 (254)
Q Consensus 88 ~-~~~-~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~-~--~~----------------~~-~~~~~~~~~~ 145 (254)
. ... ....|...|++++|+|++ +||+|+.||+|++||+..++ . .. .+ .+.++.+.|+
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 0 001 122456789999999975 89999999999999986431 1 00 11 2345566678
Q ss_pred eEEEEeCCCCCceeeEEEEecCC-CceeEEEEecCcE-EEEEECCCcEEEEeccCCc-----------eeeEeCCCCCCc
Q psy12788 146 QVLVKPLSGESKGRGVILKSQYG-YEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL-----------LSEVLWPDSGRN 212 (254)
Q Consensus 146 ~~~v~~~~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~-----------~~~~~~~~~~g~ 212 (254)
.+++||+.++. ....+..+.. ..|.+++|+|+++ +++++.|++++|||+++++ +..+.|+ |+|+
T Consensus 334 tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S-p~g~ 410 (524)
T 2j04_B 334 YFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS-RLHP 410 (524)
T ss_dssp EEEEECGGGHH--HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC-SSCC
T ss_pred eEEEEECCCCC--cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC-CCCC
Confidence 89999998763 2223333322 3588999999774 5566778899999998764 4577787 7776
Q ss_pred eeEEeeCceEEEEEeC
Q psy12788 213 EKFYFDNVTVCLVFNA 228 (254)
Q Consensus 213 ~~~~~~~~~~~~~~~~ 228 (254)
.......+..+.+|+.
T Consensus 411 ~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 411 MVLAGSADGSLIITNA 426 (524)
T ss_dssp BCEEEETTTEEECCBS
T ss_pred eEEEEECCCEEEEEec
Confidence 6665555666666664
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-21 Score=170.82 Aligned_cols=158 Identities=11% Similarity=0.087 Sum_probs=117.0
Q ss_pred CCCEEEEecCCeEEEEeCCCcEEEEeCC----------CCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-E
Q psy12788 8 VPPYALSWPAGYILAAGSDRIVTIYESD----------GRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-I 74 (254)
Q Consensus 8 ~~v~~l~w~~~~l~s~s~D~~i~vWd~~----------g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i 74 (254)
..|.++.|+|. ++++|.|++|++|+.+ ++.++.+. . +|..+|.+++|+| ++++|++|+.|+ +
T Consensus 77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 151 (343)
T 3lrv_A 77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE---V-DSANEIIYMYGHNEVNTEYFIWADNRGTI 151 (343)
T ss_dssp ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE---C-CCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEee---c-CCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence 34666777777 9999999999999733 33344433 1 5667899999999 999999999995 9
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG 154 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 154 (254)
++||+....... .....+...|++++|+|||++||+|+.||.|++||+..++...
T Consensus 152 ~~wd~~~~~~~~----~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~--------------------- 206 (343)
T 3lrv_A 152 GFQSYEDDSQYI----VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS--------------------- 206 (343)
T ss_dssp EEEESSSSCEEE----EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC---------------------
T ss_pred EEEECCCCcEEE----EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc---------------------
Confidence 999976543311 1122344579999999999999999999999999986443210
Q ss_pred CCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 155 ESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 155 ~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
..+...+..+|++++|+|++.+++++++++++|||+++++.
T Consensus 207 ------~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 207 ------SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG 247 (343)
T ss_dssp ------EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred ------cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence 11111245689999999988877766677999999998753
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=3.2e-20 Score=166.59 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=155.1
Q ss_pred cCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788 5 QHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS 82 (254)
Q Consensus 5 ~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~ 82 (254)
+|...|.+++|+.+.|++|+.|++|++|| .+++++..+. +|...|++++| ++++|++|+.|+ +++||+...
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-----GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-----CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-----CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 46678999999989999999999999999 7888886664 78899999998 789999999996 999997654
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-----------------eeceeEEEEecCC
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-----------------WKGKFEMIYVSPS 145 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-----------------~~~~~~~~~~~~~ 145 (254)
.... ....|...|.+++|++ .++++|+.||.|++||+..++.. .++.+.++...++
T Consensus 204 ~~~~-----~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 276 (435)
T 1p22_A 204 EMLN-----TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276 (435)
T ss_dssp CEEE-----EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred cEEE-----EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC
Confidence 4321 1234667899999974 59999999999999998654321 1233455666788
Q ss_pred eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCc-eeEEeeCceEEE
Q psy12788 146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRN-EKFYFDNVTVCL 224 (254)
Q Consensus 146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 224 (254)
.+++||+.++. .+.....+...|.++.+.+ ..+++++.|+++++||+.++++....-. ..+. ....+++..+..
T Consensus 277 ~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s 351 (435)
T 1p22_A 277 TIKVWNTSTCE---FVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNKRIVS 351 (435)
T ss_dssp EEEEEETTTCC---EEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEECCSSEEEE
T ss_pred eEEEEECCcCc---EEEEEcCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeC-CcCcEEEEEecCCEEEE
Confidence 99999999884 3333344567899999974 6788899999999999998876433211 1111 111223334444
Q ss_pred EEeCCeeEEEEee
Q psy12788 225 VFNAGELSIIEYG 237 (254)
Q Consensus 225 ~~~~g~~~~~~~~ 237 (254)
.-.+|.+.+++..
T Consensus 352 g~~dg~i~vwd~~ 364 (435)
T 1p22_A 352 GAYDGKIKVWDLV 364 (435)
T ss_dssp EETTSCEEEEEHH
T ss_pred EeCCCcEEEEECC
Confidence 4444566666554
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=6.5e-20 Score=164.78 Aligned_cols=226 Identities=9% Similarity=0.076 Sum_probs=162.5
Q ss_pred cccCCCCC-EEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788 3 VVQHPVPP-YALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW 79 (254)
Q Consensus 3 l~~h~~~v-~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~ 79 (254)
+.+|...| .+++++++.|++|+.|++|++|| .+++++..+. +|...|.+++|+ +++|++|+.|+ +++||+
T Consensus 114 l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-----GHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp EECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred ecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-----CCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 56888764 78888889999999999999999 7888886664 789999999997 67999999996 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCC
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPS 145 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~ 145 (254)
...... .....|...|.+++|+ +++|++|+.||.|++||...++... ++.+.++...++
T Consensus 187 ~~~~~~-----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 259 (445)
T 2ovr_B 187 ETGECI-----HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF 259 (445)
T ss_dssp TTTEEE-----EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred CcCcEE-----EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCC
Confidence 643322 1123466789999995 6789999999999999987654332 223345556688
Q ss_pred eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCc-eeEEeeCceEEE
Q psy12788 146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRN-EKFYFDNVTVCL 224 (254)
Q Consensus 146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 224 (254)
.+++||+.++ ..+.....+...|.++.+. ...+++++.|+++++||+.+++.....-. ..+. ..+.+++..+..
T Consensus 260 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~ 334 (445)
T 2ovr_B 260 MVKVWDPETE---TCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKDNILVS 334 (445)
T ss_dssp CEEEEEGGGT---EEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECC-CCSCEEEEEEETTEEEE
T ss_pred EEEEEECCCC---cEeEEecCCCCceEEEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEcC-CcccEEEEEEeCCEEEE
Confidence 9999999887 3333333455689999994 35677888999999999999876433211 1111 223344554445
Q ss_pred EEeCCeeEEEEeecCeeeeeeec
Q psy12788 225 VFNAGELSIIEYGNNEILTCVRI 247 (254)
Q Consensus 225 ~~~~g~~~~~~~~~~~~~~~~~~ 247 (254)
.-.+|.+.+++....+.+.....
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECS
T ss_pred EeCCCeEEEEECCCCcEEEEEcc
Confidence 55557777777766665555543
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=7.9e-21 Score=161.74 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=139.1
Q ss_pred cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeee-----------------------------------
Q psy12788 3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDY----------------------------------- 44 (254)
Q Consensus 3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~----------------------------------- 44 (254)
+.+|...|.+++|+| ++|++|+.|++|++|| .++++++.+..
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~ 142 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH 142 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee
Confidence 346888999999998 4799999999999999 77776655421
Q ss_pred --cCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeE---EEeecC
Q psy12788 45 --TAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI---ACGGLC 118 (254)
Q Consensus 45 --~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~l---a~g~~d 118 (254)
... +|...+..++|+|+|++|++++.|+ +++||.......... ......+...|.+++|+|++..+ ++++.+
T Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 143 VATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp EEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC-SEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred EEEEc-CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc-eeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 112 4677889999999999999999996 999997654332211 12223455689999999988754 467789
Q ss_pred CcEEEEeeeeeeeEee---------------ceeEEEEe--cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE
Q psy12788 119 GSVELFESVLKRTIWK---------------GKFEMIYV--SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 181 (254)
Q Consensus 119 g~v~iwd~~~~~~~~~---------------~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~ 181 (254)
+.|++||......... +.+.+... .++.+++||+.++. .+..-..|...|++++|+|+++
T Consensus 221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spdg~ 297 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGA 297 (318)
T ss_dssp CEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS
T ss_pred CEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCC
Confidence 9999999764433211 11223333 46789999999884 3333334567899999999886
Q ss_pred -EEEEECCCcEEEEeccC
Q psy12788 182 -YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 182 -~~v~~~d~~i~i~dl~~ 198 (254)
+++++.|++|+|||+..
T Consensus 298 ~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTEEEEECCSC
T ss_pred EEEEEecCCeEEEEECCC
Confidence 55688899999999864
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=1.5e-20 Score=188.39 Aligned_cols=212 Identities=14% Similarity=0.201 Sum_probs=160.7
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EE
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IK 75 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~ 75 (254)
.+.+|...|.+++|+|+ +|++++.|++|++|| .+|+++..+. +|...|++++|+| ++.++++|+.|+ ++
T Consensus 652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-----EHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc-----CCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 35689999999999984 799999999999999 7899987776 7889999999999 556899999996 99
Q ss_pred EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------------
Q psy12788 76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------------------- 134 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------------------- 134 (254)
+||+...... .....|...|++++|+|||++|++|+.||.|++||+..++....
T Consensus 727 vwd~~~~~~~-----~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1249)
T 3sfz_A 727 LWDLNQKECR-----NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801 (1249)
T ss_dssp EEETTSSSEE-----EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred EEECCCcchh-----heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence 9997654322 12235678999999999999999999999999999865533211
Q ss_pred --------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc-----
Q psy12788 135 --------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL----- 200 (254)
Q Consensus 135 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~----- 200 (254)
+.+ +....++.+.+|++.++. ....+...+...|..++|+|++.++ +++.++++++||+.+++
T Consensus 802 ~~~~~s~dg~~-l~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 802 KCCSWSADGDK-IIVAAKNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CCCCBCTTSSE-EEEEETTEEEEEETTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCE-EEEEcCCcEEEEEecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 111 222346788999998885 4444444566789999999988655 56678899999999765
Q ss_pred ------eeeEeCCCCCCceeEEeeCceEEEEEe
Q psy12788 201 ------LSEVLWPDSGRNEKFYFDNVTVCLVFN 227 (254)
Q Consensus 201 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~ 227 (254)
+..+.|+ ++|+.......+....+|+
T Consensus 879 ~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 879 RGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp CCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEE
T ss_pred CCCccceEEEEEC-CCCCEEEEEeCCCeEEEEE
Confidence 3456666 5555555444455555555
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.88 E-value=3.3e-20 Score=159.37 Aligned_cols=224 Identities=16% Similarity=0.135 Sum_probs=157.6
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+++|+|+ +|++++.|+.|++|+ ..+....... .+...+..+.++|++++|++|+.|+ +++||
T Consensus 82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-----GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec-----CCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 5689999999999984 799999999999999 5555444333 4567889999999999999999996 89998
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSVELFESVLKRTIW----------------KGKFEMI 140 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~ 140 (254)
........ .....+...+..++|++++ .++++++.|+.|++||...++... ++.+.++
T Consensus 157 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 157 TLGVCKYT----VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp TTSCEEEE----ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eCCCceEE----EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 54322111 2223456789999999885 568899999999999986554332 1234445
Q ss_pred EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEE-eeC
Q psy12788 141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFY-FDN 219 (254)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~-~~~ 219 (254)
...++.+++||+.+.. .+... .....|..+.+++++.+++++.|++++|||++++.+....-. ........ -..
T Consensus 233 ~s~Dg~i~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~h~~ 307 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGK---HLYTL-DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ-EVISTSSKAEPP 307 (340)
T ss_dssp EETTCEEEEEETTTTE---EEEEE-ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC-C-------CCCC
T ss_pred EeCCCeEEEEEeccCc---eeeee-cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc-cceeeeccCCCC
Confidence 5667899999998873 32222 234689999999988999999999999999998865432211 10000111 134
Q ss_pred ceEEEEEeC-CeeEEEEeecCe
Q psy12788 220 VTVCLVFNA-GELSIIEYGNNE 240 (254)
Q Consensus 220 ~~~~~~~~~-g~~~~~~~~~~~ 240 (254)
.+.++.|++ |.+.+....+..
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSC
T ss_pred CEEEEEECCCCCEEEEEeCCCE
Confidence 567788877 555555544443
No 97
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.88 E-value=8.9e-22 Score=170.42 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=138.8
Q ss_pred ccCCCCCEEEEecC------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC----CCEEEEEeCC
Q psy12788 4 VQHPVPPYALSWPA------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS----GQAVVVGSYD 72 (254)
Q Consensus 4 ~~h~~~v~~l~w~~------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs~d 72 (254)
.+|..+|.+++|+| ..+++++.|+.|++|| .+++.++.+.......|...|++++|+|+ |++|++|+.|
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 37999999999996 2466666777999999 66776666542221136688999999999 6799999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEee----------------
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWK---------------- 134 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~---------------- 134 (254)
+ +++||+....... ....|...|++++|+| ++++|++|+.||.|++||+..++....
T Consensus 95 g~i~v~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 95 GIIRIINPITMQCIK-----HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp CEEEEECTTTCCEEE-----EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred CEEEEEEchhceEee-----eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 6 9999976433221 1234678999999999 999999999999999999865443221
Q ss_pred ---ceeEEEEecCCeEEEEeCCCCCce-------------------------eeEEEEecCCCceeEEEEecCcEEEEEE
Q psy12788 135 ---GKFEMIYVSPSQVLVKPLSGESKG-------------------------RGVILKSQYGYEITDVAIMGNDRYLVAR 186 (254)
Q Consensus 135 ---~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~l~s~~~~~i~~i~~~~~~~~~v~~ 186 (254)
+.+.++...++.+++||+.++... ........+...|.+++|+ .+.+++++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~ 248 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKS 248 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEEC
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEe
Confidence 123344455778999998765210 0011111256789999999 46778888
Q ss_pred CCCcEEEEeccCCc
Q psy12788 187 TPDTLLLGDLHRNL 200 (254)
Q Consensus 187 ~d~~i~i~dl~~~~ 200 (254)
.|+.+++||+.+++
T Consensus 249 ~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 249 CENAIVCWKPGKME 262 (366)
T ss_dssp SSSEEEEEEESSTT
T ss_pred cCCEEEEEeCCCcc
Confidence 89999999998764
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.88 E-value=3.9e-21 Score=164.14 Aligned_cols=190 Identities=14% Similarity=0.097 Sum_probs=124.6
Q ss_pred cccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCC---------CEEEEeeecCCCCCCCCEEEEEECCC--CCEE
Q psy12788 3 VVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDG---------RVHRIFDYTAPHYKEREFTVACSSPS--GQAV 66 (254)
Q Consensus 3 l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g---------~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~l 66 (254)
+.+|..+|.+++|++ ++|++|+.|++|++|| ..+ +++..+. +|...|++++|+|+ +++|
T Consensus 53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-----DSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-----CCSSCEEEEEECCGGGCSEE
T ss_pred eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-----ccCCceeEEEEcCCCCCcEE
Confidence 457999999999986 4799999999999999 555 3344432 78899999999999 9999
Q ss_pred EEEeCCc-EEEEEecCCCcce--ee------------------------------------------------c-----C
Q psy12788 67 VVGSYDN-IKLFAWSPSKSVW--EE------------------------------------------------Q-----P 90 (254)
Q Consensus 67 a~gs~d~-i~l~d~~~~~~~~--~~------------------------------------------------~-----~ 90 (254)
++++.|+ +++||+....... .. . .
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999996 9999976433110 00 0 0
Q ss_pred ceecCCCCcEeEEEEecCC----CeEEEeecCCcEEEEeeeeeeeEeece---eEE---------EEec--------CCe
Q psy12788 91 NKTIPNLYTISALSWKRDG----SRIACGGLCGSVELFESVLKRTIWKGK---FEM---------IYVS--------PSQ 146 (254)
Q Consensus 91 ~~~~~~~~~i~~l~~spdG----~~la~g~~dg~v~iwd~~~~~~~~~~~---~~~---------~~~~--------~~~ 146 (254)
.....|...|++++|+|+| ++|++|+.||.|++||+..+....... ... .+.. ...
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 0011245678899999998 788999999999999886543221100 000 0000 001
Q ss_pred EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788 147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~ 200 (254)
..+++.... ..+.....+...|++++|+++++ +++++.|++|+|||+.+++
T Consensus 288 ~~~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 288 AELQSNLQV---ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---CCSEEE---EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeecccccc---cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 111111111 12222233456899999999886 5567889999999998875
No 99
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.88 E-value=1.4e-20 Score=165.17 Aligned_cols=190 Identities=13% Similarity=0.105 Sum_probs=138.1
Q ss_pred cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeee---------cCCCCCCCCEEEEEECC-CCCEEEE
Q psy12788 3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDY---------TAPHYKEREFTVACSSP-SGQAVVV 68 (254)
Q Consensus 3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~---------~~~~~~~~~v~~~a~sP-dg~~la~ 68 (254)
+.+|..+|.+++|+| ++|++|+.|++|++|| .+++....+.. ... +|...|++++|+| ++++|++
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD-VHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT-CCSSCEEEEEECTTCTTCEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccc-cCCCcEEEEEEccCCCcEEEE
Confidence 457999999999988 4799999999999999 55543322210 012 4888999999999 7889999
Q ss_pred EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecC---CCeEEEeecCCcEEEEeeeeeeeEe-----------
Q psy12788 69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD---GSRIACGGLCGSVELFESVLKRTIW----------- 133 (254)
Q Consensus 69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---G~~la~g~~dg~v~iwd~~~~~~~~----------- 133 (254)
++.|+ +++||+..... .....+...+.++.|+|. +.++++|+.+|.|++||+..++...
T Consensus 118 ~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQT------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp EETTSEEEEEETTTTEE------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred EeCCCeEEEeeCCCCcc------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 99886 99999754322 223345668999999995 4599999999999999986543221
Q ss_pred -----ece-eEEEEecCCeEEEEeCCCCCceeeEEEE---------------ecCCCceeEEEEecCcE-EEEEECCCcE
Q psy12788 134 -----KGK-FEMIYVSPSQVLVKPLSGESKGRGVILK---------------SQYGYEITDVAIMGNDR-YLVARTPDTL 191 (254)
Q Consensus 134 -----~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~---------------s~~~~~i~~i~~~~~~~-~~v~~~d~~i 191 (254)
.+. ..++...++.+++||+.++. ...... ..+...|.+++|+|+++ +++++.|+.+
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRAS--GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCC--cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 112 13345567789999997653 111111 23456799999999876 5567789999
Q ss_pred EEEeccCCce
Q psy12788 192 LLGDLHRNLL 201 (254)
Q Consensus 192 ~i~dl~~~~~ 201 (254)
++||+.+++.
T Consensus 270 ~vwd~~~~~~ 279 (408)
T 4a11_B 270 RLWNSSNGEN 279 (408)
T ss_dssp EEEETTTCCB
T ss_pred EEEECCCCcc
Confidence 9999998753
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-20 Score=168.89 Aligned_cols=192 Identities=8% Similarity=0.054 Sum_probs=138.0
Q ss_pred cCCCCCEEEEecC--CeEEEEeCCCcEEEEeC----CCCEEEEee--------ecCCCCCCCCEEEEE--ECCCCCEEEE
Q psy12788 5 QHPVPPYALSWPA--GYILAAGSDRIVTIYES----DGRVHRIFD--------YTAPHYKEREFTVAC--SSPSGQAVVV 68 (254)
Q Consensus 5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~----~g~~~~~~~--------~~~~~~~~~~v~~~a--~sPdg~~la~ 68 (254)
+|..+|.+++|+| +.|++|+.|++|++||. +|++++.+. .... ++...+.+++ ++|++++|++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNF-GKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGG-SSCCCEEEEEEEECSSCEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCc-ccccCceEEEEEEcCCCCEEEE
Confidence 6899999999988 47999999999999983 555544332 1111 1456677777 7799999999
Q ss_pred EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------------
Q psy12788 69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK------------- 134 (254)
Q Consensus 69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~------------- 134 (254)
|+.|+ +++||+......... ....|...|++++|+|+|++|++|+.||.|++||+..++....
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE 264 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred EeCCCeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence 99996 999997654432211 1112567899999999999999999999999999865543321
Q ss_pred --------ceeEEEEecCCeEEEEeCCCCCceeeEEEEec-------------------------CCCceeEEEEecCcE
Q psy12788 135 --------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ-------------------------YGYEITDVAIMGNDR 181 (254)
Q Consensus 135 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-------------------------~~~~i~~i~~~~~~~ 181 (254)
+.+.++...++.+++||+.++. ....+..+ +...|.+++|+ +++
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred eccccCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 1133344456789999998874 22333311 33468899999 455
Q ss_pred -EEEEECCCcEEEEeccCCceee
Q psy12788 182 -YLVARTPDTLLLGDLHRNLLSE 203 (254)
Q Consensus 182 -~~v~~~d~~i~i~dl~~~~~~~ 203 (254)
+++++.|++|++||+.+++...
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEecCCCCeEEEEECCCcccce
Confidence 5566779999999999987543
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-21 Score=173.95 Aligned_cols=192 Identities=12% Similarity=0.055 Sum_probs=134.5
Q ss_pred ccCCCCCEEEEecC-C--eEEEEeCCCcEEEEe-CC---CCEEE-EeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788 4 VQHPVPPYALSWPA-G--YILAAGSDRIVTIYE-SD---GRVHR-IFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I 74 (254)
Q Consensus 4 ~~h~~~v~~l~w~~-~--~l~s~s~D~~i~vWd-~~---g~~~~-~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i 74 (254)
.+|...|.+++|+| + +|++|+.|++|++|| .+ +.+.+ .+.+ +|...|++++|+|++++|++|+.|+ +
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY----DCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE----ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec----cCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 67899999999998 4 799999999999999 44 43111 1111 4678999999999999999999996 9
Q ss_pred EEEEec---CCCccee----ecCceec-C--CCCcEeEEE--EecCCCeEEEeecCCcEEEEeeeeeeeEe---------
Q psy12788 75 KLFAWS---PSKSVWE----EQPNKTI-P--NLYTISALS--WKRDGSRIACGGLCGSVELFESVLKRTIW--------- 133 (254)
Q Consensus 75 ~l~d~~---~~~~~~~----~~~~~~~-~--~~~~i~~l~--~spdG~~la~g~~dg~v~iwd~~~~~~~~--------- 133 (254)
++||+. ....... ......+ + +...+.++. ++||+++|++|+.||.|++||+..++...
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 999984 1111100 0000001 1 445677777 67899999999999999999986554321
Q ss_pred ---------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEe----cCcEEE-EEECCCcEEEEeccC
Q psy12788 134 ---------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS-QYGYEITDVAIM----GNDRYL-VARTPDTLLLGDLHR 198 (254)
Q Consensus 134 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~----~~~~~~-v~~~d~~i~i~dl~~ 198 (254)
.+.+.++...++.+++||+.++ ..+.... .+...|.+++++ +++.++ +++.|++|+|||+.+
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 1123444556778999999987 3332222 344589999665 456555 456688999999998
Q ss_pred Ccee
Q psy12788 199 NLLS 202 (254)
Q Consensus 199 ~~~~ 202 (254)
+++.
T Consensus 293 ~~~~ 296 (437)
T 3gre_A 293 GHCQ 296 (437)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8754
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.88 E-value=1.3e-20 Score=165.34 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=141.2
Q ss_pred cCCCCCEEEEecC---C--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEE
Q psy12788 5 QHPVPPYALSWPA---G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKL 76 (254)
Q Consensus 5 ~h~~~v~~l~w~~---~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l 76 (254)
.|...+.+++|.+ + .|++++.|+.|++|| .+++++..+. +|...|++++|+|+++ +|++|+.|+ +++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKL 213 (408)
T ss_dssp ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----CCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----CCCCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence 4677889999976 2 799999999999999 7777776554 6888999999999998 588999996 999
Q ss_pred EEecCCCcceeec-----------CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------
Q psy12788 77 FAWSPSKSVWEEQ-----------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------- 134 (254)
Q Consensus 77 ~d~~~~~~~~~~~-----------~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------- 134 (254)
||........... ......+...|++++|+|||++|++++.||.|++||+..++....
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence 9976433211100 001124567899999999999999999999999999876543210
Q ss_pred ----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788 135 ----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 135 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~ 201 (254)
....+....++.+.+||+.++. .+.....+...|.+++|+|+++ +++++.|+.+++||+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE---QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTCC---EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCCc---ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 1123344567899999999884 3333344567899999999876 45677899999999998875
No 103
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.88 E-value=1.8e-20 Score=164.80 Aligned_cols=191 Identities=11% Similarity=0.030 Sum_probs=138.6
Q ss_pred cccCCCCCEEEEecCC---------eEEEEeCCCcEEEEe-CCCCE-----EEEeeecCCCCC-----CCCEEEEEEC--
Q psy12788 3 VVQHPVPPYALSWPAG---------YILAAGSDRIVTIYE-SDGRV-----HRIFDYTAPHYK-----EREFTVACSS-- 60 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~---------~l~s~s~D~~i~vWd-~~g~~-----~~~~~~~~~~~~-----~~~v~~~a~s-- 60 (254)
+.+|..+|.+++|+++ +|++++.|++|++|| .+++. +..+. .| ...|.+++|+
T Consensus 58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-----LLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-----CSCTTGGGSCEEEEEEECC
T ss_pred EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-----ccccccCCCcEEEEEEeec
Confidence 5689999999999854 699999999999999 56654 55543 56 4889999999
Q ss_pred --CCCCE-EEEEeCCc-EEEEEecC------CCcce-eec-Ccee-----cCCCCcEeEEEEecCCCeEEEeecCCcEEE
Q psy12788 61 --PSGQA-VVVGSYDN-IKLFAWSP------SKSVW-EEQ-PNKT-----IPNLYTISALSWKRDGSRIACGGLCGSVEL 123 (254)
Q Consensus 61 --Pdg~~-la~gs~d~-i~l~d~~~------~~~~~-~~~-~~~~-----~~~~~~i~~l~~spdG~~la~g~~dg~v~i 123 (254)
|++++ |++|+.|+ +++||+.. ..... ... .... ..+...|++++|+|+| +|++|+.||.|++
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence 99999 99999996 99999875 22211 100 0000 2356789999999999 9999999999999
Q ss_pred EeeeeeeeEe-----------e-----------ceeEEEEecC---CeEEEEeCCCCCceeeEEEEec------------
Q psy12788 124 FESVLKRTIW-----------K-----------GKFEMIYVSP---SQVLVKPLSGESKGRGVILKSQ------------ 166 (254)
Q Consensus 124 wd~~~~~~~~-----------~-----------~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~------------ 166 (254)
||+..++... . +.+.++...+ +.+.+||+.++. .+.....
T Consensus 212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCB
T ss_pred EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---ccceeccCccccccccccc
Confidence 9986443221 1 1123334445 789999998874 3333333
Q ss_pred -CCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788 167 -YGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 167 -~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~ 202 (254)
+...|.+++|++++++ ++++.|+.++|||+.+++..
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 5678999999998765 55777999999999988753
No 104
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=1.5e-20 Score=188.32 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=146.6
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+++|+|+ +|++|+.|++|++|| .+++++.++. +|...|++++|+|+|++||+|+.|+ +++||
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-----AHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 4579999999999984 799999999999999 7888887664 7889999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEec--CCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKR--DGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMI 140 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~ 140 (254)
+....... ....|...|++++|+| ++.++++|+.||.|++||..+++... ++.+.++
T Consensus 686 ~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 686 SATGKLVH-----TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp TTTCCEEE-----EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred CCCCceEE-----EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence 76543321 2235677999999999 55689999999999999987654332 1234455
Q ss_pred EecCCeEEEEeCCCCCceeeEEEEe------------cCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 141 YVSPSQVLVKPLSGESKGRGVILKS------------QYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~l~s------------~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
...++.+++||+.++. ....+.. .....+.+++|++++.+++++.++.+.+||+.++..
T Consensus 761 ~s~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSAN--ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp EESSSEEEEEEGGGTE--EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred EECCCeEEEEeCCCCc--ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 5667899999998773 2222211 112368889999999888888899999999987653
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6e-21 Score=166.23 Aligned_cols=161 Identities=8% Similarity=0.088 Sum_probs=116.6
Q ss_pred cCCCCCEEEEecC--C--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 5 QHPVPPYALSWPA--G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 5 ~h~~~v~~l~w~~--~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+|..+|.+++|+| + +|++|+.|++|++|| .++++...+. . .+...+++++|+|+|++||+|+.|+ +++||
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~-~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---A-KSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC---C-CSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---c-CCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 5668899999988 3 799999999999999 7787765442 1 4556799999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG 158 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (254)
+........ .....|..+|++++|+|||++|++++ ++.|++||++..+.... +..-
T Consensus 199 ~~~~~~~~~---~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~-----------------~~~~--- 254 (343)
T 3lrv_A 199 LSSPDQASS---RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA-----------------YPTY--- 254 (343)
T ss_dssp SSCTTSCCE---ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS-----------------SCCC---
T ss_pred CCCCCCCcc---EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee-----------------eccc---
Confidence 765443201 11113678999999999999999999 66999999865432211 0000
Q ss_pred eeEEEEecCCCce--eEEEEecCcEEEE-EEC-CCcEEEEeccCC
Q psy12788 159 RGVILKSQYGYEI--TDVAIMGNDRYLV-ART-PDTLLLGDLHRN 199 (254)
Q Consensus 159 ~~~~l~s~~~~~i--~~i~~~~~~~~~v-~~~-d~~i~i~dl~~~ 199 (254)
..+...+ ..++|+|++++++ ++. ++.++||++..+
T Consensus 255 ------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 255 ------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0001122 4699999887765 455 899999999655
No 106
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.88 E-value=7.4e-20 Score=163.69 Aligned_cols=184 Identities=12% Similarity=0.139 Sum_probs=136.8
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
+.+|...|.+|+|+|+ +|++|+.|++|++|| .++++++.+. +|...+.++++ ++++|++|+.|+ +++||
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-----~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-----SHSARVGSLSW--NSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-----CCCCceEEEee--CCCEEEEEeCCCceeEee
Confidence 3468889999999984 899999999999999 7888886664 78888988877 568999999996 88999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------ec------------ee
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------KG------------KF 137 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------~~------------~~ 137 (254)
........ .....|...+..+.|+|+|+++++++.||.+++||...++... .+ ..
T Consensus 216 ~~~~~~~~----~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 216 VRVAEHHV----ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp TTSSSCEE----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred ecccceee----EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 65433221 1234567789999999999999999999999999986543110 00 11
Q ss_pred EEEE--ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEE--CCCcEEEEeccCCce
Q psy12788 138 EMIY--VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVAR--TPDTLLLGDLHRNLL 201 (254)
Q Consensus 138 ~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~--~d~~i~i~dl~~~~~ 201 (254)
..+. ..|+.+++||+.++. .... -.....+..+.+++++.. ++++ .|++|+|||+.+++.
T Consensus 292 la~~~gs~D~~I~iwd~~t~~---~~~~-~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGA---CLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTE---EEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred EEEEeecCCCEEEEEeCCccc---ccee-eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 1222 236789999999883 2222 233567899999987754 4444 588999999987754
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.88 E-value=1.8e-20 Score=167.66 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=142.4
Q ss_pred ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d 78 (254)
.+.+|...+.+++|++..|++|+.|+++++|| .. ...+..+. +|...+..+.|+|+|+++++++.|+ +++|+
T Consensus 184 ~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-----~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec-----ccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 35689999999999999999999999999999 33 35555554 7889999999999999999999996 99999
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCe-EEE--eecCCcEEEEeeeeeeeEee---------------ceeEEE
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IAC--GGLCGSVELFESVLKRTIWK---------------GKFEMI 140 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~--g~~dg~v~iwd~~~~~~~~~---------------~~~~~~ 140 (254)
........... .....+...|.+++|+|++.. +++ |+.|+.|++||+.+++.... +...++
T Consensus 259 ~~~~~~~~~~~-~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 259 SAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337 (420)
T ss_dssp SSCCSSCSCCS-EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred eccccccceee-eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence 76544322110 223446678999999998654 444 45799999999876654321 112233
Q ss_pred Ee--cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788 141 YV--SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 141 ~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~ 200 (254)
.. .++++++||+.++. .+..-..|...|++++|+|+++ +++++.|++|+|||+....
T Consensus 338 ~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 33 46789999999884 3333344567899999999886 5668889999999987643
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.87 E-value=1.2e-20 Score=167.42 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=132.9
Q ss_pred CCCEEEEecCCe---EEEEeCCCcEEEEeC-C-CCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEec
Q psy12788 8 VPPYALSWPAGY---ILAAGSDRIVTIYES-D-GRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWS 80 (254)
Q Consensus 8 ~~v~~l~w~~~~---l~s~s~D~~i~vWd~-~-g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~ 80 (254)
.....++++++. +++++.|+.|+||+. . |+....+ .... +|...|++++|+| ++++||+|+.|+ +++|++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~-~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV-PLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC-CCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC-ceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 344567888864 445788999999993 3 2211111 1233 7899999999999 999999999996 9999986
Q ss_pred CCCccee--ecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEee------------------ceeEE
Q psy12788 81 PSKSVWE--EQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIWK------------------GKFEM 139 (254)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~~------------------~~~~~ 139 (254)
....... ........|...|++++|+|+| ++|++|+.||.|++||+..++.... +.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5422110 0001223467899999999998 6999999999999999865443211 12334
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecC-CCceeEEEEecCcEEEEEE----CCCcEEEEeccCCc
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQY-GYEITDVAIMGNDRYLVAR----TPDTLLLGDLHRNL 200 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~i~~i~~~~~~~~~v~~----~d~~i~i~dl~~~~ 200 (254)
+...++.+++||+.++. ....+...+ +..+..+.|++++++++++ .++.+++||+.+++
T Consensus 193 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 44557789999999873 222231233 3358999999999887765 68899999998864
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.87 E-value=2.5e-21 Score=169.17 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=110.8
Q ss_pred CCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECC---CCCEEEEEeCCc-EEEEEecCCCcceeecCceecC--CC
Q psy12788 26 DRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSP---SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP--NL 97 (254)
Q Consensus 26 D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sP---dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~--~~ 97 (254)
|++|++|+ ++|+.+..+. .|...++.++|+| ++++||+|+.|+ +||||+.+.+.... ..-. +.
T Consensus 156 d~~V~~~~~s~dG~~~~s~~-----~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t----L~g~~~~v 226 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQF-----LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK----MHIDDSYQ 226 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEE-----ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE----EECCC---
T ss_pred CCcEEEEEECCCCceeeeec-----cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE----EcCCCcce
Confidence 88899998 5588776654 5677888889998 779999999996 99999765443211 1111 12
Q ss_pred CcEeEEEEecCCCeE------------EEeecCCcEEEEeeeeeeeEe-------ece------------eEEEEecCCe
Q psy12788 98 YTISALSWKRDGSRI------------ACGGLCGSVELFESVLKRTIW-------KGK------------FEMIYVSPSQ 146 (254)
Q Consensus 98 ~~i~~l~~spdG~~l------------a~g~~dg~v~iwd~~~~~~~~-------~~~------------~~~~~~~~~~ 146 (254)
..+.+++|||||+++ ++|+.|++|++||..+++... ++. +..+...++.
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgT 306 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGT 306 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSC
T ss_pred eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCc
Confidence 367888999999987 678899999999987665431 111 2345567899
Q ss_pred EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEec
Q psy12788 147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDL 196 (254)
Q Consensus 147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl 196 (254)
+++||+.++. ....+..+.+..+..++|+|+++++ +|+.|++|+|||+
T Consensus 307 IkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCS--EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCc--EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999984 2333322222234469999998765 5777999999996
No 110
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=8.5e-20 Score=168.86 Aligned_cols=190 Identities=14% Similarity=0.060 Sum_probs=140.2
Q ss_pred ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCC----CEEEEeeecCCCCCCCC-EEEEEECC--CCCEEEEEeCCc
Q psy12788 4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDG----RVHRIFDYTAPHYKERE-FTVACSSP--SGQAVVVGSYDN 73 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g----~~~~~~~~~~~~~~~~~-v~~~a~sP--dg~~la~gs~d~ 73 (254)
..|...|.+++|+|+ +|++++ |+.|++|| .++ ++...+. +|... |++++|+| +|++||+|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-----~h~~~~v~~~~~sp~~~~~~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT-----GHGSSVVTTVKFSPIKGSQYLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC-----TTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEe-----cCCCceEEEEEECcCCCCCEEEEecCCC
Confidence 358889999999984 677777 88999999 667 6776664 78899 99999999 999999999996
Q ss_pred -EEEEEecCCCc----ceeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeeeeeEe-----------
Q psy12788 74 -IKLFAWSPSKS----VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKRTIW----------- 133 (254)
Q Consensus 74 -i~l~d~~~~~~----~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~~~~~----------- 133 (254)
+++||+..... ..... .....+...|.+++|+|||++|++++.+ +.|.+||........
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVK-SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 167 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEE-EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred EEEEEeCCCCccccccccccc-chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE
Confidence 99999753200 00110 1123356789999999999999999988 799999842111100
Q ss_pred ---ece-eEEEEecCCeEEEEeCCCCCceeeEEEEecCCC---ceeEEEEecC-cE-EEEEECCCcEEEEeccCCceee
Q psy12788 134 ---KGK-FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY---EITDVAIMGN-DR-YLVARTPDTLLLGDLHRNLLSE 203 (254)
Q Consensus 134 ---~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~---~i~~i~~~~~-~~-~~v~~~d~~i~i~dl~~~~~~~ 203 (254)
++. ..++...++.+++||+.++ ........+.. .|.+++|+|+ ++ +++++.|+.+++||+.+++...
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 112 3445566788999999877 33333333455 8999999998 76 4557889999999999887543
No 111
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2e-21 Score=171.74 Aligned_cols=192 Identities=12% Similarity=0.138 Sum_probs=139.3
Q ss_pred cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecC--CCCCCCCEEEEEECCCC-CEEEEEeCC---
Q psy12788 3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTA--PHYKEREFTVACSSPSG-QAVVVGSYD--- 72 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~--~~~~~~~v~~~a~sPdg-~~la~gs~d--- 72 (254)
+.+|...|.+++|+|+ .|++++.|++|++|| .+++++..+.... . +|...|++++|+|++ .+|++++.|
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS-GIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS-CCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc-ccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 3578999999999874 699999999999999 7777776664211 1 126789999999997 689999887
Q ss_pred -cEEEEEecCCCcceeecCceec-CCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEee---------------
Q psy12788 73 -NIKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWK--------------- 134 (254)
Q Consensus 73 -~i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~--------------- 134 (254)
.+++||+....... .... .|...|++++|+| ++++|++++.||.|++||+.+++....
T Consensus 240 ~~i~~~d~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 240 PSILIWDLRNANTPL----QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp CCCCEEETTSTTSCS----BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT
T ss_pred ceEEEEeCCCCCCCc----EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC
Confidence 68999976432211 1122 4677999999999 999999999999999999876544321
Q ss_pred -c-eeEEEEecCCeEEEEeCCCCCceee------------EEEEe--------------------cCCCceeEEEEecCc
Q psy12788 135 -G-KFEMIYVSPSQVLVKPLSGESKGRG------------VILKS--------------------QYGYEITDVAIMGND 180 (254)
Q Consensus 135 -~-~~~~~~~~~~~~~v~~~~~~~~~~~------------~~l~s--------------------~~~~~i~~i~~~~~~ 180 (254)
+ .+.++...++.+++|++.++..... ..+.. .+...+..++|++++
T Consensus 316 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 395 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG 395 (416)
T ss_dssp TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT
T ss_pred CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC
Confidence 1 2334445577899999976531000 00000 034567899999999
Q ss_pred EEEEE-ECCCcEEEEeccCC
Q psy12788 181 RYLVA-RTPDTLLLGDLHRN 199 (254)
Q Consensus 181 ~~~v~-~~d~~i~i~dl~~~ 199 (254)
++++. +.|++|+|||+.+.
T Consensus 396 ~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 396 KLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp EEECBCTTSSCBCCBCCCCC
T ss_pred eEEEEeCCCCeEEEEEeccC
Confidence 88765 45889999998764
No 112
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=1.9e-20 Score=173.26 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=144.4
Q ss_pred ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCC-CCEEEEEeCCc
Q psy12788 2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPS-GQAVVVGSYDN 73 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPd-g~~la~gs~d~ 73 (254)
.+.+|...|.+++|+|+ .|++++.|++|++|| .+++++..+. +|.. .|++++|+|+ |++|++|+.|+
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-----ccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 35689999999999984 699999999999999 7778776664 6777 8999999999 99999999986
Q ss_pred -EEEEEecCCCcceeecCceec---CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------
Q psy12788 74 -IKLFAWSPSKSVWEEQPNKTI---PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------- 133 (254)
Q Consensus 74 -i~l~d~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------- 133 (254)
+++||+........ ... .|...|++++|+ +|++|++++.||.|++||+..++...
T Consensus 230 ~i~vwd~~~~~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 230 KISCFDGKSGEFLKY----IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp CEEEEETTTCCEEEE----CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred eEEEEECCCCCEeEE----ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 99999765432211 112 567899999999 99999999999999999987554332
Q ss_pred ---eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc------CCceeeE
Q psy12788 134 ---KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH------RNLLSEV 204 (254)
Q Consensus 134 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~------~~~~~~~ 204 (254)
.+.+.++...++.+.+||+.++ ..+.....+...|.+++| |+ +++++.|+.+++||+. .+.+..+
T Consensus 305 ~~~~~~~l~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 305 VATGNGRIISLSLDGTLNFYELGHD---EVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp EEEETTEEEEEETTSCEEEEETTEE---EEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred EeCCCCeEEEEECCCCEEEEECCCC---cEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 2223445566788999999876 333333445668888888 75 7778888888888864 3344555
Q ss_pred eC
Q psy12788 205 LW 206 (254)
Q Consensus 205 ~~ 206 (254)
.|
T Consensus 379 ~~ 380 (615)
T 1pgu_A 379 DN 380 (615)
T ss_dssp EC
T ss_pred EE
Confidence 55
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-19 Score=163.26 Aligned_cols=189 Identities=9% Similarity=-0.044 Sum_probs=133.9
Q ss_pred CCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCC---EEEEeeecCC----------------------------------
Q psy12788 7 PVPPYALSWPAG-YILAAGSDRIVTIYE-SDGR---VHRIFDYTAP---------------------------------- 47 (254)
Q Consensus 7 ~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~---------------------------------- 47 (254)
..++.+++|+++ .++.++.++.|++|| .+|+ .+..+.....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 356788999874 355555688999999 8888 6655542100
Q ss_pred ---------------CCCCCCEEEEEECCCCCEE-EEEeCCc-EEEEEec--CCCcceeecCceecCCCCcEeEEEEecC
Q psy12788 48 ---------------HYKEREFTVACSSPSGQAV-VVGSYDN-IKLFAWS--PSKSVWEEQPNKTIPNLYTISALSWKRD 108 (254)
Q Consensus 48 ---------------~~~~~~v~~~a~sPdg~~l-a~gs~d~-i~l~d~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd 108 (254)
.+|...|++++|+|+|++| |+|+.|+ +++||+. ..... .. .....+...|++++|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-~~--~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-KL--RKRFCFSKRPNAISIAED 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-EE--EEEEECSSCEEEEEECTT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-ee--eecccCCCCceEEEEcCC
Confidence 0123369999999999996 8898886 9999986 32221 11 111245578999999999
Q ss_pred CCeEEEeecCCcEEEEeeeeeeeE--------------------ee---ceeEEEEecCCeEEEEeCCCCCceeeEEEEe
Q psy12788 109 GSRIACGGLCGSVELFESVLKRTI--------------------WK---GKFEMIYVSPSQVLVKPLSGESKGRGVILKS 165 (254)
Q Consensus 109 G~~la~g~~dg~v~iwd~~~~~~~--------------------~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 165 (254)
|++|++|+.+|.|++|++..++.. .+ +.+.++...++.+++||+.++. ....+..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~ 238 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--IVDKWLF 238 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--CEEEECC
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--eeeeeec
Confidence 999999999999999996433211 12 3345555567789999998874 2222233
Q ss_pred cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788 166 QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 166 ~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~ 201 (254)
.+...|.+++|+ +++ +++++.|++|+|||+.++++
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 456789999999 775 55678899999999999874
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=1.7e-19 Score=155.26 Aligned_cols=190 Identities=9% Similarity=0.059 Sum_probs=141.2
Q ss_pred cccCCCCCEEEEecC--C-eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCC--CCCCEEEEEECCCCCEEEEEeCCc-EE
Q psy12788 3 VVQHPVPPYALSWPA--G-YILAAGSDRIVTIYES-DGRVHRIFDYTAPHY--KEREFTVACSSPSGQAVVVGSYDN-IK 75 (254)
Q Consensus 3 l~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~--~~~~v~~~a~sPdg~~la~gs~d~-i~ 75 (254)
+.+|...|.+++|+| + .|++|+.|++|++||. .......+. + |...|++++|+| +++|++++.|+ ++
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT-----NNEANLGICRICKYG-DDKLIAASWDGLIE 125 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB-----SCCCCSCEEEEEEET-TTEEEEEETTSEEE
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecc-----ccCCCCceEEEEeCC-CCEEEEEcCCCeEE
Confidence 457899999999986 5 7999999999999996 665554443 6 889999999999 99999999996 99
Q ss_pred EEEecCCCcc-----eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-eee----Ee------------
Q psy12788 76 LFAWSPSKSV-----WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-KRT----IW------------ 133 (254)
Q Consensus 76 l~d~~~~~~~-----~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~----~~------------ 133 (254)
+||+...... ... ...+.+...|++++|+|++ +++++.||.|++||+.. +.. ..
T Consensus 126 iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLN--SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp EECHHHHTTBCEEEEESC--SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred EEcccccccccccccCCe--eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 9997530000 111 2233466789999999998 99999999999999876 221 10
Q ss_pred ---eceeEEEEecCCeEEEEeCCCC------CceeeEEEEecC--------CCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788 134 ---KGKFEMIYVSPSQVLVKPLSGE------SKGRGVILKSQY--------GYEITDVAIMGNDR-YLVARTPDTLLLGD 195 (254)
Q Consensus 134 ---~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~l~s~~--------~~~i~~i~~~~~~~-~~v~~~d~~i~i~d 195 (254)
++.+.++...++.+.+|++... . ....+..+. ...|.+++|+|+++ +++++.|+.+++||
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 2334445555778999998765 3 334444332 23899999999876 55677899999999
Q ss_pred ccCCceeeE
Q psy12788 196 LHRNLLSEV 204 (254)
Q Consensus 196 l~~~~~~~~ 204 (254)
+.+++....
T Consensus 280 ~~~~~~~~~ 288 (342)
T 1yfq_A 280 LQTRKKIKN 288 (342)
T ss_dssp TTTTEEEEE
T ss_pred CccHhHhhh
Confidence 999886433
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.7e-20 Score=169.45 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=150.4
Q ss_pred cCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 81 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~ 81 (254)
+|...|.+++|+|+ .||+++.|++|++||..+ ++..++ ....-....+.+++|||||++||+|+.|+ +++||...
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 56788999999994 799999999999999554 554443 11000123599999999999999999996 99999765
Q ss_pred CCc------ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee------Ee--e----------cee
Q psy12788 82 SKS------VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT------IW--K----------GKF 137 (254)
Q Consensus 82 ~~~------~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~------~~--~----------~~~ 137 (254)
+.. ...........|...|.+++||||| +|+++.|++|++||+..++. .. . +..
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~ 238 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYK 238 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTE
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCE
Confidence 321 0000000012355689999999999 88899999999999865441 11 1 111
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEE--ecCcEEE-EEECCCcEEEEeccC------Ccee------
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAI--MGNDRYL-VARTPDTLLLGDLHR------NLLS------ 202 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~--~~~~~~~-v~~~d~~i~i~dl~~------~~~~------ 202 (254)
.++ .+++.+++|++.++ ....+...+...|..++| ++++..+ +++.+++ ++|.+.. +.+.
T Consensus 239 LAS-a~~~tIkLWd~~~~---~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~ 313 (588)
T 2j04_A 239 VVL-TCPGYVHKIDLKNY---SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKK 313 (588)
T ss_dssp EEE-ECSSEEEEEETTTT---EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHH
T ss_pred EEE-EeCCeEEEEECCCC---eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCE
Confidence 222 24678999999887 444555457778999999 9887654 5666888 9998742 1100
Q ss_pred eEeCCCCCCceeEEe--eCceEEEEEeC-CeeEEEEeec
Q psy12788 203 EVLWPDSGRNEKFYF--DNVTVCLVFNA-GELSIIEYGN 238 (254)
Q Consensus 203 ~~~~~~~~g~~~~~~--~~~~~~~~~~~-g~~~~~~~~~ 238 (254)
-..|+ ..|++...+ ...+.++.+++ |++..+.|..
T Consensus 314 v~lW~-~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 314 FKKWS-TIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp HHHTT-TTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEE-CCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence 11365 444433222 22466788888 7777666663
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.86 E-value=4.1e-20 Score=166.12 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=138.4
Q ss_pred cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCC----EEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc
Q psy12788 3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGR----VHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN 73 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~----~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~ 73 (254)
+.+|...|.+++|+|+ .|++|+.|++|++|| ..+. .+... .... +|...|.+++|+| ++.+|++++.|+
T Consensus 177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK-NIFT-GHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS-EEEC-CCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc-eeec-CCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 5689999999999973 799999999999999 4421 11111 1123 6888999999999 688999999886
Q ss_pred -EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeee-eeEe----------------e
Q psy12788 74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLK-RTIW----------------K 134 (254)
Q Consensus 74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~-~~~~----------------~ 134 (254)
+++||+....... . ......|...|++++|+|+|+ +||+|+.||.|++||++.. +... .
T Consensus 255 ~i~i~d~~~~~~~~-~-~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 255 KLMIWDTRNNNTSK-P-SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp EEEEEETTCSCSSS-C-SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred eEEEEECCCCCCCc-c-eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence 9999976532100 0 011235677899999999998 6899999999999998652 2111 1
Q ss_pred ce-eEEEEecCCeEEEEeCCCCCc-----------eeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccCCc
Q psy12788 135 GK-FEMIYVSPSQVLVKPLSGESK-----------GRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 135 ~~-~~~~~~~~~~~~v~~~~~~~~-----------~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~~~ 200 (254)
+. +.++...++.+.+||+..... ...+.....++..|..++|+|++. +++++.|+.|+||++..+.
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 11 234555678899999976210 012222234456799999999876 4567789999999998765
Q ss_pred e
Q psy12788 201 L 201 (254)
Q Consensus 201 ~ 201 (254)
+
T Consensus 413 ~ 413 (430)
T 2xyi_A 413 Y 413 (430)
T ss_dssp H
T ss_pred c
Confidence 4
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.7e-20 Score=170.45 Aligned_cols=185 Identities=17% Similarity=0.165 Sum_probs=127.3
Q ss_pred CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEE--------E------------e-------eecCCCCCCCCEEE
Q psy12788 7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHR--------I------------F-------DYTAPHYKEREFTV 56 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~--------~------------~-------~~~~~~~~~~~v~~ 56 (254)
...|.+|+|+|+ +|||+|.|++|+ | ..++++. . + .... +|...|++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~--~~~~~V~~ 90 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS--QPVCYPRV 90 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT--SCSCCEEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec--CCCCcEEE
Confidence 467889999985 799999999995 3 2222110 0 0 0111 34678999
Q ss_pred EEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCC-----CcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788 57 ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL-----YTISALSWKRDGSRIACGGLCGSVELFESVLKR 130 (254)
Q Consensus 57 ~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~-----~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~ 130 (254)
++|||||++||+++.|+ +++||.. ..+. .+.|. ..|.+++|||||++||+|+.||+|+|||+..++
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~---~~l~-----~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDN---KMLT-----NLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETT---EEEE-----ECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCC---ceee-----eccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999999999999996 9999932 1221 11222 259999999999999999999999999987653
Q ss_pred e----------E---ee----cee--------EEEEecCCeEEEEeCCCCCce-eeEEEEecCCCceeEEEEecCcEEEE
Q psy12788 131 T----------I---WK----GKF--------EMIYVSPSQVLVKPLSGESKG-RGVILKSQYGYEITDVAIMGNDRYLV 184 (254)
Q Consensus 131 ~----------~---~~----~~~--------~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~i~~i~~~~~~~~~v 184 (254)
. . .. ..+ .++...+..+++|++..+... ....+...+...|.+++|+ +..+++
T Consensus 163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LAS 241 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVL 241 (588)
T ss_dssp TTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEE
T ss_pred cccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEE
Confidence 1 1 00 111 335556778899999876310 0123444455689999999 444555
Q ss_pred EECCCcEEEEeccCCceeeEe
Q psy12788 185 ARTPDTLLLGDLHRNLLSEVL 205 (254)
Q Consensus 185 ~~~d~~i~i~dl~~~~~~~~~ 205 (254)
+ .+++|++||+.+++.....
T Consensus 242 a-~~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 242 T-CPGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp E-CSSEEEEEETTTTEEEEEE
T ss_pred E-eCCeEEEEECCCCeEEEEE
Confidence 5 4799999999988874444
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.7e-20 Score=177.29 Aligned_cols=190 Identities=11% Similarity=0.157 Sum_probs=140.8
Q ss_pred ccccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCC
Q psy12788 2 RVVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYD 72 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d 72 (254)
.+.+|..+|.+++|++ +.|++|+.|++|++|| .+++ .+..+ . +|...|++++|+|+ |++|++|+.|
T Consensus 48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~----~-~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH----A-VHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE----C-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc----c-CCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 3568999999999974 4799999999999999 5665 34333 2 78899999999999 9999999999
Q ss_pred c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-------------CCCeEEEeecCCcEEEEeeeeee----eEe-
Q psy12788 73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-------------DGSRIACGGLCGSVELFESVLKR----TIW- 133 (254)
Q Consensus 73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------dG~~la~g~~dg~v~iwd~~~~~----~~~- 133 (254)
+ +++||+........ .....+...|++++|+| ||++|++|+.||.|++||+..+. ...
T Consensus 123 g~I~vwdl~~~~~~~~---~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 123 GKVSVVEFKENGTTSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp SEEEEEECCSSSCCCC---EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEeecCCCcce---eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 6 99999765422111 22335667899999999 69999999999999999986541 111
Q ss_pred ---------------e---ceeEEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCcEE-EEEECCCcEE
Q psy12788 134 ---------------K---GKFEMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGNDRY-LVARTPDTLL 192 (254)
Q Consensus 134 ---------------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~~~-~v~~~d~~i~ 192 (254)
. +.+.++...++.+++||+.++.......+. ..+...|.+++|+|++++ ++++.|+.++
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence 1 334455556778999998875210011111 124568999999998865 5567899999
Q ss_pred EEeccCC
Q psy12788 193 LGDLHRN 199 (254)
Q Consensus 193 i~dl~~~ 199 (254)
|||+.++
T Consensus 280 vwd~~~~ 286 (753)
T 3jro_A 280 LWKENLE 286 (753)
T ss_dssp CCBCCSS
T ss_pred EEecCCC
Confidence 9999854
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.82 E-value=5.1e-18 Score=151.06 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=134.9
Q ss_pred cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEE
Q psy12788 3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLF 77 (254)
Q Consensus 3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~ 77 (254)
+.+|...|.+++|++ ..+++++.|++|++|| .+++++..+. .|...+.+++|+|+|+++++++ .|+ +++|
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 347888999999976 4789999999999999 7778887765 5677899999999999885544 665 8999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee--------cCCcEEEEeeeeeeeEee---------------
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG--------LCGSVELFESVLKRTIWK--------------- 134 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~--------~dg~v~iwd~~~~~~~~~--------------- 134 (254)
|...... ...+.....+.+++|+|||++|++++ .||.|++||...++....
T Consensus 240 d~~~~~~------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 240 DRKTKLE------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNT 313 (433)
T ss_dssp ETTTTEE------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSS
T ss_pred ECCCCcE------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCC
Confidence 9653222 12233445699999999999999998 488999999865443211
Q ss_pred ceeE-EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC---------------CCcEEEEecc
Q psy12788 135 GKFE-MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART---------------PDTLLLGDLH 197 (254)
Q Consensus 135 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~---------------d~~i~i~dl~ 197 (254)
+.+. ++...++.+.+||+.++. ..... ..+..+..++|++++++ ++++. |+.+++||+.
T Consensus 314 g~~l~~~~~~~~~v~v~d~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 314 ENKIYVSDMCCSKIEVYDLKEKK---VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTE---EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCEEEEEecCCCEEEEEECCCCc---EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 1111 222346788999998773 22222 34667999999998864 45554 3589999999
Q ss_pred CCcee
Q psy12788 198 RNLLS 202 (254)
Q Consensus 198 ~~~~~ 202 (254)
++++.
T Consensus 390 ~~~~~ 394 (433)
T 3bws_A 390 TDTVK 394 (433)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 88754
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=1.6e-17 Score=145.86 Aligned_cols=206 Identities=13% Similarity=0.098 Sum_probs=140.4
Q ss_pred CCCCCEEEEecCC--eE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEEEe
Q psy12788 6 HPVPPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAW 79 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~d~ 79 (254)
+...+.+++|+|+ .| ++++.|++|++|| .++++++.+. .+ ..+.+++|+|+|++|++++ .++ +++||.
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-----~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----CC-CCccceEECCCCCEEEEEECCCCEEEEEEC
Confidence 3345899999984 44 6777999999999 7888877664 22 3899999999999886555 544 899996
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEeeeeeeeEee---------------ceeE-EEEe
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESVLKRTIWK---------------GKFE-MIYV 142 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~~~~~~~~---------------~~~~-~~~~ 142 (254)
..... ...+.+...+.+++|+|||++| ++++.++.|++||+.+++.... +.+. ++..
T Consensus 104 ~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 104 TSNTV------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp TTTEE------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred CCCeE------EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC
Confidence 54322 1223344578999999999988 6778899999999865543321 1122 2223
Q ss_pred cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEE---CCCcEEEEeccCCcee----------eEeCCC
Q psy12788 143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVAR---TPDTLLLGDLHRNLLS----------EVLWPD 208 (254)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~---~d~~i~i~dl~~~~~~----------~~~~~~ 208 (254)
.++.+.+||+.++. ..... ..+..+..++|++++++ ++++ .++.+++||+.+++.. .+.|+
T Consensus 178 ~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s- 252 (391)
T 1l0q_A 178 DSMSISVIDTVTNS---VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVT- 252 (391)
T ss_dssp TTTEEEEEETTTTE---EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEEC-
T ss_pred CCCEEEEEECCCCe---EEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEc-
Confidence 45689999998873 22222 23567899999998864 4455 5789999999987642 34555
Q ss_pred CCCceeEEe-eCceEEEEEeC
Q psy12788 209 SGRNEKFYF-DNVTVCLVFNA 228 (254)
Q Consensus 209 ~~g~~~~~~-~~~~~~~~~~~ 228 (254)
++|+..|.. ..+....+|+.
T Consensus 253 ~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 253 PDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEET
T ss_pred cCCCEEEEEcCCCCEEEEEEC
Confidence 555444332 33444555554
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.79 E-value=7.2e-18 Score=145.60 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=130.3
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE--CCCCCEEEEEeCCc-EEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS--SPSGQAVVVGSYDN-IKL 76 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~--sPdg~~la~gs~d~-i~l 76 (254)
+.+|...|.+++|+|+ +|++++.|++|++|| .+++++... +|...|++++| +|++++|++++.|+ +++
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec------cccCceEEEEEEeCCCCCEEEEccCCCcEEE
Confidence 5679999999999984 799999999999999 666655422 57789999999 99999999999996 999
Q ss_pred EEecCCCcceeecC------------------------------------ceecCCCCcEeEEEEecCCCe----EEEee
Q psy12788 77 FAWSPSKSVWEEQP------------------------------------NKTIPNLYTISALSWKRDGSR----IACGG 116 (254)
Q Consensus 77 ~d~~~~~~~~~~~~------------------------------------~~~~~~~~~i~~l~~spdG~~----la~g~ 116 (254)
||+........... .........+..+++.+++.. +++|+
T Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 156 WDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp ECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 99765432211100 000011235667777777665 99999
Q ss_pred cCCcEEEEeeeeeee-------------------------Ee------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe
Q psy12788 117 LCGSVELFESVLKRT-------------------------IW------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS 165 (254)
Q Consensus 117 ~dg~v~iwd~~~~~~-------------------------~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 165 (254)
.||.|++||...... .. ++.+.++...++.+++||+.++ ..+....
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~ 312 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSE 312 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECC
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEec
Confidence 999999999754311 00 1223445556778999999987 3333334
Q ss_pred cCCCceeEEEEecCcEE-EEEECCCcEEEEe
Q psy12788 166 QYGYEITDVAIMGNDRY-LVARTPDTLLLGD 195 (254)
Q Consensus 166 ~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~d 195 (254)
.+...|.+++|+|++++ ++++.|+..+.++
T Consensus 313 ~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 45678999999998865 5566776555444
No 122
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1e-18 Score=158.11 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=115.5
Q ss_pred cCCCCCEEEEecCC--eEE----EEeCCCcEEEEe-CCC--------CEEEEeeecCCCCCCCCEEEEEECCC-CCEEEE
Q psy12788 5 QHPVPPYALSWPAG--YIL----AAGSDRIVTIYE-SDG--------RVHRIFDYTAPHYKEREFTVACSSPS-GQAVVV 68 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~----s~s~D~~i~vWd-~~g--------~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~ 68 (254)
.|+..|.+++|+++ +|+ +|+.|++|+||| .++ +.+..+. ... +|...|++++|+|+ +++||+
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~-~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-LLK-DAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-CCC-SGGGSEEEEEECSSCTTEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-ccC-CCCCceEEEEECCCCCCEEEE
Confidence 35667999999984 677 788999999999 433 2222221 223 68889999999998 899999
Q ss_pred EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeE
Q psy12788 69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQV 147 (254)
Q Consensus 69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 147 (254)
++.|+ +++||....... .....|...|++++|||||++||+|+.||.|++||.. ++... ++.
T Consensus 168 ~s~Dg~v~iwD~~~~~~~-----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~------~~~----- 230 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKV-----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK------VIP----- 230 (434)
T ss_dssp EETTSCEEEEEESSSEEE-----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE------EEC-----
T ss_pred EECCCeEEEEEcCCCcce-----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc------ccc-----
Confidence 99996 999998653221 1223456789999999999999999999999999975 21110 000
Q ss_pred EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC--CC------cEEEEeccCC
Q psy12788 148 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART--PD------TLLLGDLHRN 199 (254)
Q Consensus 148 ~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--d~------~i~i~dl~~~ 199 (254)
.... ....+...|.++.++++..|+++.. ++ .+++||+...
T Consensus 231 ----~~~~-------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 ----CPPF-------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ----CCTT-------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ----CCcc-------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 0000 0001123788999998888876543 32 3889999865
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.79 E-value=8.2e-17 Score=141.35 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=118.8
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 95 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d~-i~l~d~~~~~~~~~~~~~~~~~ 95 (254)
.+++++.|++|++|| .+++++..+. .| ..+.+++|+|+|+++ ++++.|+ +++||....+. ...+.
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------~~~~~ 71 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIP-----VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------IATVP 71 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------EEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEee-----cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------EEEEE
Confidence 578999999999999 7788876664 34 358999999999987 5666675 99999654322 12233
Q ss_pred CCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee---------------ceeE-EEEecCCeEEEEeCCCCCce
Q psy12788 96 NLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK---------------GKFE-MIYVSPSQVLVKPLSGESKG 158 (254)
Q Consensus 96 ~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~---------------~~~~-~~~~~~~~~~v~~~~~~~~~ 158 (254)
....+.+++|+|||++|++++ .++.|++||..+++.... +.+. ++...++.+.+||+.++.
T Consensus 72 ~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-- 149 (391)
T 1l0q_A 72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-- 149 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--
Confidence 444899999999999886555 569999999875543321 1122 233346789999998873
Q ss_pred eeEEEEecCCCceeEEEEecCcEEE-E-EECCCcEEEEeccCCce
Q psy12788 159 RGVILKSQYGYEITDVAIMGNDRYL-V-ARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 159 ~~~~l~s~~~~~i~~i~~~~~~~~~-v-~~~d~~i~i~dl~~~~~ 201 (254)
..... ..+..+..++|+++++++ + ++.++++++||+.++++
T Consensus 150 -~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 150 -VINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp -EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred -EEEEE-ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 22222 234578999999988654 4 44578999999998764
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.79 E-value=1.2e-18 Score=152.87 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=105.1
Q ss_pred CeEEE--EeCCCcEEEEe-CCCC----------------EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEE
Q psy12788 18 GYILA--AGSDRIVTIYE-SDGR----------------VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKL 76 (254)
Q Consensus 18 ~~l~s--~s~D~~i~vWd-~~g~----------------~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l 76 (254)
+.++. |+.|++|++|| .+++ ++..+ . +|..+|++++|+|+|++||+|+.| . +++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~----~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI----K-AHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEE----C-CCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE----E-ccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 44444 57888999999 5443 13333 3 799999999999999999999999 5 899
Q ss_pred EEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----ceeEEEEecCCeEEEEe
Q psy12788 77 FAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----GKFEMIYVSPSQVLVKP 151 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~v~~ 151 (254)
||........ ..... |...|++++|||||++||+|+.|++|++||+........ ..+...+.... |.
T Consensus 223 wd~~~~~~~~----~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 294 (355)
T 3vu4_A 223 FKTEDGVLVR----EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE----WS 294 (355)
T ss_dssp EETTTCCEEE----EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS----SC
T ss_pred EECCCCcEEE----EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc----cc
Confidence 9976543321 11112 678999999999999999999999999999864321110 00000000000 00
Q ss_pred CCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCC
Q psy12788 152 LSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRN 199 (254)
Q Consensus 152 ~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~ 199 (254)
+ ....+..........++|++++.++ +++.|+.+.+|++..+
T Consensus 295 ~------~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 295 L------CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp S------EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred e------eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 1111111112335678999988654 5667899999997654
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.78 E-value=1.2e-16 Score=140.03 Aligned_cols=182 Identities=9% Similarity=0.006 Sum_probs=122.2
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEE-EEeCC-cEEEE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV-VGSYD-NIKLF 77 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la-~gs~d-~i~l~ 77 (254)
+..|...|.+++|+|+ +|++|+.| .+++|| ..++...... + ..+..+++.|++++++ +|+.| .+++|
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE------M-RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE------C-SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee------c-CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 3569999999999985 57776655 589999 5555443221 1 2477899999999885 46666 59999
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCC-----------------------------------CeEEE--eecCCc
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-----------------------------------SRIAC--GGLCGS 120 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-----------------------------------~~la~--g~~dg~ 120 (254)
|....... ..+.+...|.+++|+|++ .++|+ |+.||.
T Consensus 87 d~~~~~~~------~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~ 160 (355)
T 3vu4_A 87 DDVKKQDV------SRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ 160 (355)
T ss_dssp ETTTTEEE------EEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred ECCCCcEE------EEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence 97543321 123344567777776653 34555 578999
Q ss_pred EEEEeeeeee-----------------eE-e--------------eceeEEEEecCCe-EEEEeCCCCCceeeEEEEec-
Q psy12788 121 VELFESVLKR-----------------TI-W--------------KGKFEMIYVSPSQ-VLVKPLSGESKGRGVILKSQ- 166 (254)
Q Consensus 121 v~iwd~~~~~-----------------~~-~--------------~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~- 166 (254)
|++||+..++ .. . ++.+.++...++. +++||+.++. ....+...
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~ 238 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGL 238 (355)
T ss_dssp EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTT
T ss_pred EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC
Confidence 9999987533 11 1 1234555666787 9999999885 33444422
Q ss_pred CCCceeEEEEecCcEE-EEEECCCcEEEEeccCCc
Q psy12788 167 YGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 167 ~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~ 200 (254)
+...|.+++|+|++++ ++++.|++++|||+..+.
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 6779999999998865 457789999999998653
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.78 E-value=1.6e-17 Score=149.13 Aligned_cols=169 Identities=13% Similarity=0.159 Sum_probs=113.9
Q ss_pred CeEEEEeCC------CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCccee
Q psy12788 18 GYILAAGSD------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWE 87 (254)
Q Consensus 18 ~~l~s~s~D------~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~ 87 (254)
..|+.++.+ ++|++||.+|...+.+. +|...+.+++|||||++||+++.+ .+++||......
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~-----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--- 215 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--- 215 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEE-----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEEe-----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence 456666654 79999996666565554 567789999999999999999876 478888654322
Q ss_pred ecCceecCCCCcEeEEEEecCCCeEE-EeecCCc--EEEEeeeeeeeEe--e---ceeEEEEecC-----------C--e
Q psy12788 88 EQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGS--VELFESVLKRTIW--K---GKFEMIYVSP-----------S--Q 146 (254)
Q Consensus 88 ~~~~~~~~~~~~i~~l~~spdG~~la-~g~~dg~--v~iwd~~~~~~~~--~---~~~~~~~~~~-----------~--~ 146 (254)
.....+...+.+++|||||++|| +++.++. |++||+.+++... . ....+.++++ + +
T Consensus 216 ---~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 216 ---RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp ---EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred ---EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 11233456799999999999988 6666665 8889976554321 0 0112222222 2 5
Q ss_pred EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECC---CcEEEEeccCCce
Q psy12788 147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTP---DTLLLGDLHRNLL 201 (254)
Q Consensus 147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d---~~i~i~dl~~~~~ 201 (254)
+.++|+.++. ...+ ...+..+..++|+|++++++. +.+ ..|.+||+.++++
T Consensus 293 i~~~d~~~~~---~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 293 VYKVNINGGA---PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEEETTSSC---CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred EEEEECCCCC---EEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 6666777662 2222 234567889999999876654 333 4899999998865
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.78 E-value=8.2e-17 Score=143.24 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=129.8
Q ss_pred CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeee-cCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788 7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDY-TAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 81 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~-~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~ 81 (254)
...+.+++|+|+ .+++++.|++|++|| .+|+..+.+.. ... +|...|.+++|+|+|+++++++.|+ +++||...
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 345668999874 577777889999999 67887754432 222 5778899999999999999999885 99999754
Q ss_pred CCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee---------------ceeEEEEe---
Q psy12788 82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK---------------GKFEMIYV--- 142 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~---------------~~~~~~~~--- 142 (254)
...... ...+...+.+++|+|||+++++++ .++.|++||+..++.... +.+..+..
T Consensus 201 ~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 201 LAYKAT-----VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp CCEEEE-----EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEES
T ss_pred ceEEEE-----EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCC
Confidence 332211 123556899999999999885554 799999999865543321 11222222
Q ss_pred -----cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEE-EECCCcEEEEeccCCce
Q psy12788 143 -----SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLV-ARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 143 -----~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v-~~~d~~i~i~dl~~~~~ 201 (254)
.++.+.+||+.++. ..... .+...+..++|+|+++ +++ ++.++++++||+.++++
T Consensus 276 ~~~~~~dg~i~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEK---LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp CTTCSCCEEEEEEETTTTE---EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CccccCCCeEEEEECCCCc---EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 24578899998773 33222 2234788999999874 434 46688999999998764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.76 E-value=2.8e-16 Score=140.89 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=125.6
Q ss_pred ccccCCCCCEEEEecCC--eEEEEeCCC---cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEE-EEeCCc-
Q psy12788 2 RVVQHPVPPYALSWPAG--YILAAGSDR---IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV-VGSYDN- 73 (254)
Q Consensus 2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~---~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la-~gs~d~- 73 (254)
.+.+|...+.+++|+|+ .|++++.|+ +|++|| .+|++. .+. .|...+.+++|+|||++|| +++.++
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~-----~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA-----SFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE-----CCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee-----cCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 35678899999999984 699999885 999999 677665 332 5667899999999999888 566553
Q ss_pred --EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CC--cEEEEeeeeeeeEe---------------
Q psy12788 74 --IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CG--SVELFESVLKRTIW--------------- 133 (254)
Q Consensus 74 --i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg--~v~iwd~~~~~~~~--------------- 133 (254)
+++||... +... ....+...+.+++|||||++|++++. ++ .|.+||...++...
T Consensus 247 ~~i~~~d~~~--~~~~----~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp 320 (415)
T 2hqs_A 247 LNLYVMDLAS--GQIR----QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS 320 (415)
T ss_dssp CEEEEEETTT--CCEE----ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT
T ss_pred ceEEEEECCC--CCEE----eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC
Confidence 56666443 2211 12334567999999999999998886 45 56666765443211
Q ss_pred eceeEEEEec---CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCC---cEEEEeccCCceeeE
Q psy12788 134 KGKFEMIYVS---PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPD---TLLLGDLHRNLLSEV 204 (254)
Q Consensus 134 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~---~i~i~dl~~~~~~~~ 204 (254)
++++.+.... ..++.+||+.++. ...+... ..+..++|+|+++++ .++.++ .|++||+..++...+
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred CCCEEEEEECcCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 1122222222 2367888988773 3333222 378999999998754 455555 799999986655433
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.74 E-value=6.7e-16 Score=134.91 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=107.6
Q ss_pred CEEEEecC----C-eEEEEeCCCcEEEEe-CCC---CEEEEeeecCCC-----C---------------CCCCEEEEEEC
Q psy12788 10 PYALSWPA----G-YILAAGSDRIVTIYE-SDG---RVHRIFDYTAPH-----Y---------------KEREFTVACSS 60 (254)
Q Consensus 10 v~~l~w~~----~-~l~s~s~D~~i~vWd-~~g---~~~~~~~~~~~~-----~---------------~~~~v~~~a~s 60 (254)
+.++-|-. . -|+++++ .+|++|+ .++ +++.++.+.... . +..+|.+++|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555532 2 3777776 5899999 778 666555421100 0 01257888999
Q ss_pred CC----CCEEEEEeC--------------------Cc-EEEEEecCCCcceeecCceecCCCCcEeEEEEec---CCCeE
Q psy12788 61 PS----GQAVVVGSY--------------------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR---DGSRI 112 (254)
Q Consensus 61 Pd----g~~la~gs~--------------------d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dG~~l 112 (254)
|| ++++++++. |+ +++|++++..+.. .....|...++.++||| ||.+|
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~----~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK----ENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE----EEEEECCCSSCEEEEEEEETSTTEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee----eeeccCCCceeeEEeeccCCCCceE
Confidence 99 888888663 43 6666664422211 11123455678889999 77999
Q ss_pred EEeecCCcEEEEeeeeeeeEeec---------eeEEEEec----------------------CCeEEEEeCCCCCceeeE
Q psy12788 113 ACGGLCGSVELFESVLKRTIWKG---------KFEMIYVS----------------------PSQVLVKPLSGESKGRGV 161 (254)
Q Consensus 113 a~g~~dg~v~iwd~~~~~~~~~~---------~~~~~~~~----------------------~~~~~v~~~~~~~~~~~~ 161 (254)
|+|+.|++|+|||+.+++.+..- ...+.|++ +.++++|+..++. .+
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---~l 273 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---SV 273 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE---EE
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---EE
Confidence 99999999999999877644321 01112333 3355667776662 22
Q ss_pred EEEe---cCCC--ceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788 162 ILKS---QYGY--EITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 162 ~l~s---~~~~--~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
.... ..|+ .+.+..++ ....++++.|++|+|||+.++++...
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~t 320 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTAL 320 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred EEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 1111 0122 23333333 12345567799999999999986543
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.71 E-value=1.2e-15 Score=127.42 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=121.1
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC-CCEEEEeeecCCCCC-CCCEEEEEECCCCCEEEEEeC--C-cE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYK-EREFTVACSSPSGQAVVVGSY--D-NI 74 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~-g~~~~~~~~~~~~~~-~~~v~~~a~sPdg~~la~gs~--d-~i 74 (254)
+..|...|.+++|+|+ +|++++ ++.|++|| .+ ++....+. .+ ...+.+++|+|||++|++++. + ..
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT-----GFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC-----TTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc-----ccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 5578889999999984 577766 78999999 56 66553221 33 357889999999999999883 3 37
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEE-EeecCCcEEEEeeee--eeeEe--e---ceeEEEEec---
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGSVELFESVL--KRTIW--K---GKFEMIYVS--- 143 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la-~g~~dg~v~iwd~~~--~~~~~--~---~~~~~~~~~--- 143 (254)
+||.++..... ...+.....+..++|+|||++|+ +++.++.+++|++.. ++... . ....+.+.+
T Consensus 111 ~l~~~~~~~~~-----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 111 AIYLLPSTGGT-----PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp EEEEEETTCCC-----CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred eEEEEECCCCc-----eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 78887653332 12233334589999999999988 788899999998642 22111 0 111122222
Q ss_pred --------CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECC-----------CcEEEEeccCCce
Q psy12788 144 --------PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTP-----------DTLLLGDLHRNLL 201 (254)
Q Consensus 144 --------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d-----------~~i~i~dl~~~~~ 201 (254)
++.+.+|++.... ........+...+..+.|+|++++++ ++.+ ..+.+||+.+++.
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred EEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 3445566554211 12222223345788899999887654 4443 4699999988764
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.70 E-value=8e-16 Score=139.04 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=107.6
Q ss_pred CCCEEEEecC--CeEEEEeCCCcEEEEe-CC--------C--CEEEEeeec-CCCCCCCCEEEEEECCCCCEEE----EE
Q psy12788 8 VPPYALSWPA--GYILAAGSDRIVTIYE-SD--------G--RVHRIFDYT-APHYKEREFTVACSSPSGQAVV----VG 69 (254)
Q Consensus 8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~--------g--~~~~~~~~~-~~~~~~~~v~~~a~sPdg~~la----~g 69 (254)
..+..++|++ ..|++++.|+ +++|+ .+ + ..+..+... .- .+...|++++|+|+|++|| +|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEecc
Confidence 3467788876 4788888887 89986 11 0 111111100 00 3456799999999999999 67
Q ss_pred eCCc-EEEEEecCC--------CcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEeeceeEE
Q psy12788 70 SYDN-IKLFAWSPS--------KSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWKGKFEM 139 (254)
Q Consensus 70 s~d~-i~l~d~~~~--------~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~~~~~~ 139 (254)
+.|+ +++||+... +..... .....|...|++|+|+|+ +++||+++.||+|++||++.+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------- 185 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------- 185 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-------
T ss_pred CCCceEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-------
Confidence 7785 999997532 000000 111235678999999998 899999999999999998644211
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEecc
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLH 197 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~ 197 (254)
.....+...|.+++|+++++ +++++.|+++++||++
T Consensus 186 ----------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 186 ----------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ----------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred ----------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 01112345799999999885 5567889999999998
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.70 E-value=1.3e-14 Score=134.83 Aligned_cols=222 Identities=10% Similarity=0.070 Sum_probs=142.4
Q ss_pred ecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecC
Q psy12788 15 WPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQP 90 (254)
Q Consensus 15 w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~ 90 (254)
+++ ..+++++.|++|.+|| .++++++++.. ++ .+.+++|+|||++|++++.|+ +++||....... .
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~-- 214 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT----GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--K-- 214 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC----ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--E--
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec----Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc--E--
Confidence 555 3688889999999999 78999888751 23 388999999999999999885 999997211221 1
Q ss_pred ceecCCCCcEeEEEEec----CCCeEEEeec-CCcEEEEeeeeeeeEee-----------------ceeEEEE-------
Q psy12788 91 NKTIPNLYTISALSWKR----DGSRIACGGL-CGSVELFESVLKRTIWK-----------------GKFEMIY------- 141 (254)
Q Consensus 91 ~~~~~~~~~i~~l~~sp----dG~~la~g~~-dg~v~iwd~~~~~~~~~-----------------~~~~~~~------- 141 (254)
...++....+..++||| ||++|++++. +++|.+||..+++.+.. ....+.+
T Consensus 215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 22334445689999999 9999999995 89999999755433210 0111222
Q ss_pred ----ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC-CCcEEEEeccCCceeeEeCC---CCCCc
Q psy12788 142 ----VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART-PDTLLLGDLHRNLLSEVLWP---DSGRN 212 (254)
Q Consensus 142 ----~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~-d~~i~i~dl~~~~~~~~~~~---~~~g~ 212 (254)
..++++.++|..+.+. .....-..+..+..+.|+|+++| ++++. +++|.+||+.++++....-- +..+.
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~--l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDN--LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEEETTTTEEEEEECTTSSS--CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EEEECCCCeEEEEEecCCCc--ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 2345778888876531 11111124566889999999875 45554 78999999999987543210 01111
Q ss_pred -eeEEeeCceEEEEEe---CCeeEEEEeec-------CeeeeeeecC
Q psy12788 213 -EKFYFDNVTVCLVFN---AGELSIIEYGN-------NEILTCVRIP 248 (254)
Q Consensus 213 -~~~~~~~~~~~~~~~---~g~~~~~~~~~-------~~~~~~~~~~ 248 (254)
..|...+.....+-+ ++.+.+++... -.++.++.+.
T Consensus 373 g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 373 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 122211112223322 35677787765 4566666654
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=9.7e-14 Score=118.43 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=137.1
Q ss_pred CCEEEEecCC--e-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe------------CC
Q psy12788 9 PPYALSWPAG--Y-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS------------YD 72 (254)
Q Consensus 9 ~v~~l~w~~~--~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs------------~d 72 (254)
.+..++|+|+ . +++++.++.|.+|| .+++.+..+.......+...+..++|+|||++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 5788999984 4 45666788999999 7788876665211000112566899999999988875 34
Q ss_pred -cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---ce--eEEEEecC--
Q psy12788 73 -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---GK--FEMIYVSP-- 144 (254)
Q Consensus 73 -~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---~~--~~~~~~~~-- 144 (254)
.+++||....+.. ..+.....+..++|+|||++|+++ ++.|.+||..+++.... +. ....+..+
T Consensus 115 ~~i~v~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 186 (337)
T 1pby_B 115 TRVALYDAETLSRR------KAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp CEEEEEETTTTEEE------EEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred ceEEEEECCCCcEE------EEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCcc
Confidence 5889996432211 122233457889999999999888 68999999876544321 00 00000000
Q ss_pred ---------C-----------------------eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEECCCcE
Q psy12788 145 ---------S-----------------------QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVARTPDTL 191 (254)
Q Consensus 145 ---------~-----------------------~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~~d~~i 191 (254)
+ ++.++|+.++. ...+. ......+..++|+|+++++... ++.+
T Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v 262 (337)
T 1pby_B 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVL 262 (337)
T ss_dssp CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECTTSSEEEEE-ESEE
T ss_pred EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC---ceEeecCCCCCceeeEEECCCCCEEEEe-CCeE
Confidence 0 46788888874 21221 2233467789999988766555 7899
Q ss_pred EEEeccCCceeeE-eCCCCCCceeEEee--CceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788 192 LLGDLHRNLLSEV-LWPDSGRNEKFYFD--NVTVCLVFNAGELSIIEYGNNEILTCVRIP 248 (254)
Q Consensus 192 ~i~dl~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 248 (254)
.+||+.+++.... ... ..-....+. +..+......+.+.+++....++++.+++.
T Consensus 263 ~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 263 ESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEECCCCcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999998875322 211 011111221 122222222356667776666677777665
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.65 E-value=2.3e-13 Score=116.41 Aligned_cols=171 Identities=10% Similarity=0.128 Sum_probs=112.5
Q ss_pred EEEEeCCCcEEEEeC--CCCE--EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeecCcee
Q psy12788 20 ILAAGSDRIVTIYES--DGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKT 93 (254)
Q Consensus 20 l~s~s~D~~i~vWd~--~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~~~~~ 93 (254)
+++++.|+.|++||. +|+. +..+ .+...+.+++|+|+|++|++++.+ .+++|+++...+.+.. ...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~ 79 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAE 79 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--ccc
Confidence 455578999999983 3532 2222 345678899999999999888875 4899998743333322 122
Q ss_pred cCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee---eeeeeEe---------------eceeEEEEe-cCCeEEEEeCC
Q psy12788 94 IPNLYTISALSWKRDGSRIACGGL-CGSVELFES---VLKRTIW---------------KGKFEMIYV-SPSQVLVKPLS 153 (254)
Q Consensus 94 ~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~---~~~~~~~---------------~~~~~~~~~-~~~~~~v~~~~ 153 (254)
+.....+..++|+|||++|++++. ++.|.+||+ ...+... ++.+.++.. .++.+.+|++.
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 233347889999999998877765 888999998 4333221 112233322 56789999998
Q ss_pred C-CCceeeE--EEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccC
Q psy12788 154 G-ESKGRGV--ILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHR 198 (254)
Q Consensus 154 ~-~~~~~~~--~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~ 198 (254)
+ +...... .+....+..+..++|+|+++++ +++ .++.+.+||+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 7 4210101 2233345678899999988744 454 578999999953
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.64 E-value=3.9e-13 Score=114.96 Aligned_cols=184 Identities=16% Similarity=0.108 Sum_probs=118.0
Q ss_pred cCCCCCEEEEecCC--eEEEEeCC-CcEEEEe-C--CCCEE--EEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-E
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSD-RIVTIYE-S--DGRVH--RIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-I 74 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D-~~i~vWd-~--~g~~~--~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i 74 (254)
.|...|..++|+|+ .|++++.+ +.|++|+ . +|+.. ..+. .+ ..+..++|+|+|++|++++. ++ +
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----LP-GSLTHISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----CS-SCCSEEEECTTSSEEEEEETTTTEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-----cC-CCCcEEEEcCCCCEEEEEecCCCeE
Confidence 46778899999984 58888776 8999999 4 45533 2222 22 36789999999998877765 54 8
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeee-eeeE------ee-----ceeEEEE
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVL-KRTI------WK-----GKFEMIY 141 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~-~~~~------~~-----~~~~~~~ 141 (254)
++||+. ....... .........+.+++|+|||++|++++ .++.|.+||+.. ++.. .. ....+.+
T Consensus 109 ~~~d~~-~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 109 SVTRLE-DGLPVGV--VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp EEEEEE-TTEEEEE--EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred EEEECC-CCccccc--cccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence 999975 1221111 22233445688999999999998888 899999999865 4321 00 1111222
Q ss_pred -----------ecCCeEEEEeCCC--CCceeeEEEEecC-----CCceeEEEEecCcEEEE-EE-CCCcEEEEecc
Q psy12788 142 -----------VSPSQVLVKPLSG--ESKGRGVILKSQY-----GYEITDVAIMGNDRYLV-AR-TPDTLLLGDLH 197 (254)
Q Consensus 142 -----------~~~~~~~v~~~~~--~~~~~~~~l~s~~-----~~~i~~i~~~~~~~~~v-~~-~d~~i~i~dl~ 197 (254)
..++.+.+|++.. +.......+.... ...+..++|+|+++++. +. .++.+.+||+.
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2356788888853 3100011121111 12456799999886543 44 57899999998
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.64 E-value=1.2e-13 Score=128.17 Aligned_cols=193 Identities=10% Similarity=0.042 Sum_probs=127.5
Q ss_pred CCCCCEEEEecC----C--eEEEEeC-CCcEEEEe-CCCCEEEEeeecC---C--CCCCC-CEEEEEECCCCCEEEEEe-
Q psy12788 6 HPVPPYALSWPA----G--YILAAGS-DRIVTIYE-SDGRVHRIFDYTA---P--HYKER-EFTVACSSPSGQAVVVGS- 70 (254)
Q Consensus 6 h~~~v~~l~w~~----~--~l~s~s~-D~~i~vWd-~~g~~~~~~~~~~---~--~~~~~-~v~~~a~sPdg~~la~gs- 70 (254)
+...+..++|+| + +|++++. |++|.+|| .++++++++.... + .-|+. .+.+++++|++..+++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 445678999998 5 6777774 89999999 7889888875210 0 00222 689999999887765544
Q ss_pred CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee--------------
Q psy12788 71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK-------------- 134 (254)
Q Consensus 71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~-------------- 134 (254)
.++ +.+||........ ...+++...+..++|+|||+++++++ .+++|.+||..++++...
T Consensus 300 ~~g~i~vvd~~~~~~l~----~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLT----VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp TTTEEEEEECTTSSSCE----EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred CCCeEEEEEecCCCcce----eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 444 8888865432211 11233445678899999999876655 589999999876554321
Q ss_pred ------ceeEEEEe-cCCeEEEEeCCCCCc----eeeEEEEecCCCceeEEEEecCcEEEEEEC--------CCcEEEEe
Q psy12788 135 ------GKFEMIYV-SPSQVLVKPLSGESK----GRGVILKSQYGYEITDVAIMGNDRYLVART--------PDTLLLGD 195 (254)
Q Consensus 135 ------~~~~~~~~-~~~~~~v~~~~~~~~----~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--------d~~i~i~d 195 (254)
+...++.. +++.+.+||..+++. .+.+.....++..+..|+++|+++++...+ +++|.|||
T Consensus 376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 11112222 457899999987210 022222223456788899999988776654 67999999
Q ss_pred ccCCcee
Q psy12788 196 LHRNLLS 202 (254)
Q Consensus 196 l~~~~~~ 202 (254)
+.++++.
T Consensus 456 ~~~~~~~ 462 (543)
T 1nir_A 456 LKNLDAK 462 (543)
T ss_dssp TTCTTSC
T ss_pred CCCCCCC
Confidence 9987643
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.63 E-value=2.6e-14 Score=135.90 Aligned_cols=115 Identities=8% Similarity=-0.023 Sum_probs=85.3
Q ss_pred CCCCEEEEecCC--eEEEEeC-CC-----cEEEEe-CCCCEEEEeeecCCCCCC----------------------CCEE
Q psy12788 7 PVPPYALSWPAG--YILAAGS-DR-----IVTIYE-SDGRVHRIFDYTAPHYKE----------------------REFT 55 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~-D~-----~i~vWd-~~g~~~~~~~~~~~~~~~----------------------~~v~ 55 (254)
...|..++|+|+ .|++++. |+ +|++|| .+|+..+.+... .+. ..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK---VVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG---GTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh---hcccccccccchhhhhhhhhhhccccCcc
Confidence 456899999985 7999988 88 899999 677766555321 111 2378
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEecCCCc-ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788 56 VACSSPSGQAVVVGSYDNIKLFAWSPSKS-VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 129 (254)
Q Consensus 56 ~~a~sPdg~~la~gs~d~i~l~d~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~ 129 (254)
+++|||||++|++++...+++||...... .. .....+...+..++|||||++||.++ ++.|.+||+..+
T Consensus 113 ~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~----~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV----RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp CCEECTTSSEEEEEETTEEEEEESSSCSTTSC----CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred eeEECCCCCEEEEEeCCcEEEEECCCCCcceE----EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence 89999999999999876788999754310 11 11223446799999999999999987 569999997654
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.61 E-value=4.6e-13 Score=115.82 Aligned_cols=237 Identities=9% Similarity=0.039 Sum_probs=136.6
Q ss_pred cCCCCCEEEEecCC-eEEEEeC---CCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EE
Q psy12788 5 QHPVPPYALSWPAG-YILAAGS---DRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IK 75 (254)
Q Consensus 5 ~h~~~v~~l~w~~~-~l~s~s~---D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~ 75 (254)
.+...|..++|+|+ .|++++. |+.|++|| ..|+ .+..+. .+...+..++|+|||++|++++ .++ ++
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-----~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-----APGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-----EESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-----cCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 35567888999985 3666654 68999999 4554 232221 2445678999999999988887 444 89
Q ss_pred EEEecCCCcceeecCceecC--------CCCcEeEEEEecCCCeEEEeecCCcEEEEeee-eeeeEee---------cee
Q psy12788 76 LFAWSPSKSVWEEQPNKTIP--------NLYTISALSWKRDGSRIACGGLCGSVELFESV-LKRTIWK---------GKF 137 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~--------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~-~~~~~~~---------~~~ 137 (254)
+|++..... .......... ....+.+++|+|||++++++..++.|.+||+. .++.... +..
T Consensus 112 v~~~~~~g~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 112 VMKIAADGA-LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEECTTSC-EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEEeCCCCC-eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 999854222 1110001111 11248899999999976666678899999986 3322110 111
Q ss_pred EEEEec-----------CCeEEEEeCCCCCceeeEEEE---ecCC-----CceeEEEEecCcEEE-EE-ECCCcEEEEec
Q psy12788 138 EMIYVS-----------PSQVLVKPLSGESKGRGVILK---SQYG-----YEITDVAIMGNDRYL-VA-RTPDTLLLGDL 196 (254)
Q Consensus 138 ~~~~~~-----------~~~~~v~~~~~~~~~~~~~l~---s~~~-----~~i~~i~~~~~~~~~-v~-~~d~~i~i~dl 196 (254)
.+.+.+ .+.+.+|++..... ....+. .... ..+..++|+|+++++ ++ ..++++.+||+
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTG-AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTT-EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCC-ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 223333 34566777664110 111111 1111 347789999999754 44 45789999998
Q ss_pred cC-Cc-------------eeeEeCCCCCCceeEEeeC-ceEEEEE--eC--CeeEEEEee--cCeeeeeeecCC
Q psy12788 197 HR-NL-------------LSEVLWPDSGRNEKFYFDN-VTVCLVF--NA--GELSIIEYG--NNEILTCVRIPT 249 (254)
Q Consensus 197 ~~-~~-------------~~~~~~~~~~g~~~~~~~~-~~~~~~~--~~--g~~~~~~~~--~~~~~~~~~~~~ 249 (254)
.. ++ ...+.|+ ++|+..|.... .....+| +. |++..+... .++..-.++-||
T Consensus 270 ~~~g~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~~~~ 342 (347)
T 3hfq_A 270 TADGHLTLIQQISTEGDFPRDFDLD-PTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRFLEH 342 (347)
T ss_dssp CGGGCEEEEEEEECSSSCCCEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEECC-
T ss_pred CCCCcEEEeEEEecCCCCcCeEEEC-CCCCEEEEEEcCCCcEEEEEEeCCCCeEEecccceecCCCcEEEehhh
Confidence 62 21 2245566 66665555432 2344445 43 555544432 344444455554
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.60 E-value=2.3e-13 Score=116.52 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=116.5
Q ss_pred CCCCEEEEecCC--eEEEEeC-CCcEEEEe-CCCCE-EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEE
Q psy12788 7 PVPPYALSWPAG--YILAAGS-DRIVTIYE-SDGRV-HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLF 77 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~-D~~i~vWd-~~g~~-~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~ 77 (254)
...+ .++|+|+ .|++++. +++|++|| .+++. ...+. .+..+..+++|+|+|++++++..+ .+++|
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-----cCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 3445 8999884 4655555 88999999 67776 55543 233444459999999999876655 58888
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCc-EEEEeeeee--------eeEe------------ec
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGS-VELFESVLK--------RTIW------------KG 135 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~-v~iwd~~~~--------~~~~------------~~ 135 (254)
|...... ...++....+.+++|+|||++|++++ .++. +.+|++... +... ++
T Consensus 114 d~~~~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg 187 (331)
T 3u4y_A 114 SFLKNKF------ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187 (331)
T ss_dssp ETTTTEE------EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred ECCCCCe------EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence 8643221 11233344678999999999766665 4588 999996421 1100 11
Q ss_pred eeEE-EEecCCeEEEEeCCCCCcee-eEEEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccCCce
Q psy12788 136 KFEM-IYVSPSQVLVKPLSGESKGR-GVILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHRNLL 201 (254)
Q Consensus 136 ~~~~-~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~~~~ 201 (254)
++.. +...++.+.+||+.++.... ...+ ..+..+..++|+|+++++ ++. .++.+.+||+.++++
T Consensus 188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 188 NFAFVANLIGNSIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp SEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 2221 22235678899998774100 2222 234678899999998854 343 366899999999876
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.58 E-value=4.2e-13 Score=111.73 Aligned_cols=164 Identities=9% Similarity=0.018 Sum_probs=103.5
Q ss_pred EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecC-CCcceeecCceecCCCCc
Q psy12788 22 AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP-SKSVWEEQPNKTIPNLYT 99 (254)
Q Consensus 22 s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~-~~~~~~~~~~~~~~~~~~ 99 (254)
+++.|++|++|| .+++.. .+. .|...+.+++|+|||++|++++.+.+++||... .... . .....+...
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~-----~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~--~--~~~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVW-----QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE--K--VDTGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEE-----EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE--E--CCCTTCCCB
T ss_pred CCCcceeEEEEeCCCCcee-eec-----cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce--E--ecccccccc
Confidence 456789999999 555544 332 456789999999999999999866789999754 3221 1 111112357
Q ss_pred EeEEEEecCCCeEEEee--cCCcEEEEeee--eeeeEe--------------eceeEE-EEecCCeEEEEeCCCCCceee
Q psy12788 100 ISALSWKRDGSRIACGG--LCGSVELFESV--LKRTIW--------------KGKFEM-IYVSPSQVLVKPLSGESKGRG 160 (254)
Q Consensus 100 i~~l~~spdG~~la~g~--~dg~v~iwd~~--~~~~~~--------------~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 160 (254)
+.+++|+|||++|++++ .++...||... .++... ++.+.+ +...++.+.+|++.... ..
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~ 164 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GV 164 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CC
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC--Cc
Confidence 89999999999999999 44566776653 222110 111121 22334556677643221 11
Q ss_pred EEEEecCCCceeEEEEecCcEEEE-EE-CCCcEEEEecc
Q psy12788 161 VILKSQYGYEITDVAIMGNDRYLV-AR-TPDTLLLGDLH 197 (254)
Q Consensus 161 ~~l~s~~~~~i~~i~~~~~~~~~v-~~-~d~~i~i~dl~ 197 (254)
......+...+..+.|+|++++++ ++ .++.+.||++.
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 222223445789999999887544 44 47889999775
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.57 E-value=1.4e-12 Score=111.59 Aligned_cols=173 Identities=8% Similarity=-0.044 Sum_probs=110.3
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEEecCCCcceeecCceecC
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFAWSPSKSVWEEQPNKTIP 95 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d~~~~~~~~~~~~~~~~~ 95 (254)
.+++++.|++|++|| .+|+.+..+. .+...+ .++|+|||+++++++. + .+.+||........ .....
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~----~~~~~ 81 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQIT-----LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV----VAIQE 81 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEE-----CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE----EEEEE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEE-----ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE----Eeccc
Confidence 478888999999999 7788876664 223445 9999999997777665 4 48888865433201 11112
Q ss_pred CCCcEeEEEEecCCCeEEEeecCC---cEEEEeeeeeeeEee-----ceeEEEEe-----------cCCe-EEEEeCCCC
Q psy12788 96 NLYTISALSWKRDGSRIACGGLCG---SVELFESVLKRTIWK-----GKFEMIYV-----------SPSQ-VLVKPLSGE 155 (254)
Q Consensus 96 ~~~~i~~l~~spdG~~la~g~~dg---~v~iwd~~~~~~~~~-----~~~~~~~~-----------~~~~-~~v~~~~~~ 155 (254)
+..+..+++|+|||++|+++..++ .|.+||...++.... ....+.+. .+.. +.+|++..+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 333444499999999999666553 899999865543221 11222222 2244 777777644
Q ss_pred CceeeE-EEEecCCCceeEEEEecCcE-EEEEE-CCCcEEEEeccCCce
Q psy12788 156 SKGRGV-ILKSQYGYEITDVAIMGNDR-YLVAR-TPDTLLLGDLHRNLL 201 (254)
Q Consensus 156 ~~~~~~-~l~s~~~~~i~~i~~~~~~~-~~v~~-~d~~i~i~dl~~~~~ 201 (254)
+..... ......+.....++|+|+++ ++++. .++++.+||+.++++
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 210000 01113355688999999886 44554 477999999998875
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.57 E-value=1.9e-12 Score=111.99 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=119.4
Q ss_pred cCCCCCEEEEecCC--eEEEEe-CCCcEEEEe--CCCCE--EEEeeecCCC----CCCCCEEEEEECCCCCEEEEEeCC-
Q psy12788 5 QHPVPPYALSWPAG--YILAAG-SDRIVTIYE--SDGRV--HRIFDYTAPH----YKEREFTVACSSPSGQAVVVGSYD- 72 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s-~D~~i~vWd--~~g~~--~~~~~~~~~~----~~~~~v~~~a~sPdg~~la~gs~d- 72 (254)
.|...|..++|+|+ .|++++ .|++|++|+ .+|.. +..+...... .+...+.+++|+|||++++++..+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 46678899999984 577777 688999999 34443 2222211000 012348899999999966655555
Q ss_pred cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEE-eecCCcEEEEeeee--eeeEe----------------
Q psy12788 73 NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC-GGLCGSVELFESVL--KRTIW---------------- 133 (254)
Q Consensus 73 ~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~-g~~dg~v~iwd~~~--~~~~~---------------- 133 (254)
.+++|++..... ..............+..++|+|||++|++ +..++.|.+|++.. ++...
T Consensus 163 ~v~~~~~~~~g~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 163 KVYVYNVSDAGQ-LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp EEEEEEECTTSC-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred EEEEEEECCCCc-EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence 489999873221 21100111222235788999999997666 45688999999763 22110
Q ss_pred --------eceeE-EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC-CCcEEEE--eccCCc
Q psy12788 134 --------KGKFE-MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART-PDTLLLG--DLHRNL 200 (254)
Q Consensus 134 --------~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~-d~~i~i~--dl~~~~ 200 (254)
++++. ++...++.+.+|++...+....+......+..+..++|+|++++ +++.. ++++.+| |..+|+
T Consensus 242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 11222 12233567788887633110111111223556889999999875 45555 4799999 666777
Q ss_pred eeeE
Q psy12788 201 LSEV 204 (254)
Q Consensus 201 ~~~~ 204 (254)
+..+
T Consensus 322 l~~~ 325 (347)
T 3hfq_A 322 LSLL 325 (347)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6544
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.57 E-value=5.3e-12 Score=108.57 Aligned_cols=182 Identities=8% Similarity=0.020 Sum_probs=120.0
Q ss_pred CCCEEEEecCC--eEEEEeC-------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEE
Q psy12788 8 VPPYALSWPAG--YILAAGS-------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIK 75 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~-------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~ 75 (254)
..+..++|+++ .|++++. +++|.+|| .+++.++.+.. ...+..++|+|+|+++++++. + .+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 45788999884 6666663 56899999 77888877652 234678899999997666554 4 488
Q ss_pred EEEecCCCcceeecCceecCCC--------CcEeEEEEecCCCeEEEee--cCCcEEEEeeeeeeeEee-----------
Q psy12788 76 LFAWSPSKSVWEEQPNKTIPNL--------YTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWK----------- 134 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~~~--------~~i~~l~~spdG~~la~g~--~dg~v~iwd~~~~~~~~~----------- 134 (254)
+||....+..... ..... ..+.+++|+|||+++++++ .++.|.+||..+++....
T Consensus 115 ~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 115 AIDAKTGEVKGRL----VLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEETTTCCEEEEE----ESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EEeCCCCeeEEEE----ecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 9986544332211 11111 1378899999999888887 378899999865543321
Q ss_pred -----ceeEEEEecCCeEEEEeCCCCCceeeEEEEec----CCCceeEEEEecCcE-EEEEEC-CCcEEEEeccCCcee
Q psy12788 135 -----GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ----YGYEITDVAIMGNDR-YLVART-PDTLLLGDLHRNLLS 202 (254)
Q Consensus 135 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~~~i~~i~~~~~~~-~~v~~~-d~~i~i~dl~~~~~~ 202 (254)
+.+......++.+.++|+.++. ....... ....+..++++++++ ++++.. ++.+.+||+.++++.
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 1122233345678889988873 2222221 234577899999875 445554 579999999988753
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.56 E-value=3.2e-14 Score=134.86 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=79.2
Q ss_pred CCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCCCCEEEEEeCC----------c
Q psy12788 9 PPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPSGQAVVVGSYD----------N 73 (254)
Q Consensus 9 ~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPdg~~la~gs~d----------~ 73 (254)
.+.+++|+|+ .++..+.|++|++|| .+|++...+. .|.. .|.+++|||||++||+++.+ .
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~-----~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-----GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-----TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec-----cccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 4778999985 333447899999999 6777665553 3332 48999999999999998763 3
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK 129 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~ 129 (254)
+++||...... ... .....+...+..++|||||++||.++. +.|++||...+
T Consensus 93 i~~~d~~~~~~--~~l-~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 93 YVLSKIPHGDP--QSL-DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp EEEEESSSCCC--EEC-CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred EEEEECCCCce--Eec-cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 66888654332 110 001122335889999999999999885 79999997654
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.55 E-value=2.9e-12 Score=110.25 Aligned_cols=209 Identities=11% Similarity=0.074 Sum_probs=131.9
Q ss_pred CCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC-----CCCEEEEEECCCCCEEEEEe--CCc-E
Q psy12788 7 PVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK-----EREFTVACSSPSGQAVVVGS--YDN-I 74 (254)
Q Consensus 7 ~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~-----~~~v~~~a~sPdg~~la~gs--~d~-i 74 (254)
...+..++|+++ .+++...++.|.+|| .+++.+..+..... .. +..+.+++|+|+|+++++++ .++ +
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR-KRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC-CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC-ccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 345778888873 345556689999999 78888777653211 00 11278999999999877766 244 7
Q ss_pred EEEEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec----------eeEEEEe-
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG----------KFEMIYV- 142 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~----------~~~~~~~- 142 (254)
.+||....+.. ..++ ....+..++|+|||++|++++.++.+.+||..+++..... ...+.+.
T Consensus 167 ~~~d~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 167 WVVDGGNIKLK------TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEETTTTEEE------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEEcCCCCceE------EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 88885432221 1223 3345788999999999999999999999998655433210 0112222
Q ss_pred ----------cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEE-CCCcEEEEeccCCceeeEeCCCCC
Q psy12788 143 ----------SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVAR-TPDTLLLGDLHRNLLSEVLWPDSG 210 (254)
Q Consensus 143 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~-~d~~i~i~dl~~~~~~~~~~~~~~ 210 (254)
.++.+.++|+.++. ...... .+. ...++|+++++ ++++. .++++.+||+.++++.... +.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~-~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~---~~ 312 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGN---ILAKVA-APE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF---DT 312 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCC---EEEEEE-CSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---EC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCc---EEEEEE-cCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE---ec
Confidence 23578888887774 222111 222 35799999876 45555 5789999999998764332 11
Q ss_pred CceeEEeeCceEEEEEeC-CeeEEEEee
Q psy12788 211 RNEKFYFDNVTVCLVFNA-GELSIIEYG 237 (254)
Q Consensus 211 g~~~~~~~~~~~~~~~~~-g~~~~~~~~ 237 (254)
+ ....++.|++ |...++...
T Consensus 313 ~-------~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 313 P-------THPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp C-------SEEEEEEECTTSCEEEEEEE
T ss_pred C-------CCCCeEEEcCCCCEEEEEEc
Confidence 1 1235677776 654554443
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.55 E-value=1.2e-12 Score=123.92 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=111.7
Q ss_pred CCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecC-----
Q psy12788 8 VPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP----- 81 (254)
Q Consensus 8 ~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~----- 81 (254)
..|.+++|+|+..+..+.|++|++|| .++++. .+. .+...+.+++|||||++||.+....+++|+...
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~-~l~-----~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVT-YLF-----DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEE-EEE-----CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceE-Ecc-----CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccC
Confidence 57999999996433333569999999 555544 332 344568889999999999997554689999764
Q ss_pred CCcceeecCceecCCCC--------------cEeEEEEecCCCeEEEee-------------------------------
Q psy12788 82 SKSVWEEQPNKTIPNLY--------------TISALSWKRDGSRIACGG------------------------------- 116 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--------------~i~~l~~spdG~~la~g~------------------------------- 116 (254)
..... . ...+.. .+.+++|||||++||+++
T Consensus 156 g~~~~----~-~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 156 SRAIA----V-TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp CCCEE----S-CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred CCcEE----e-ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 32210 0 011111 258999999999999998
Q ss_pred --cCCcEEEEeeeeeeeEee--------ceeEEEEecCC---------------eEEEEeCCCCCceeeEEEEecCCC--
Q psy12788 117 --LCGSVELFESVLKRTIWK--------GKFEMIYVSPS---------------QVLVKPLSGESKGRGVILKSQYGY-- 169 (254)
Q Consensus 117 --~dg~v~iwd~~~~~~~~~--------~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~~~~-- 169 (254)
.+..|.+||+.+++...- ....+.+++++ .+.+||+.++.. ...........
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYV 309 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeE
Confidence 346799999865543210 01122333322 566778777620 12222111221
Q ss_pred -ceeEEEEec--CcEEEEEE-CCCcEEEEecc
Q psy12788 170 -EITDVAIMG--NDRYLVAR-TPDTLLLGDLH 197 (254)
Q Consensus 170 -~i~~i~~~~--~~~~~v~~-~d~~i~i~dl~ 197 (254)
.+..+.|+| +++++..+ .++.+.||++.
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 246789999 88876654 56788888765
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.55 E-value=4.5e-12 Score=110.31 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=118.6
Q ss_pred CCCCCEEEEecCCeEEEEe-CCCcEEEEe-C-CCCEE---EEeeecCC-----CCCCCCEEEEEECCCCCEEEEEeC-C-
Q psy12788 6 HPVPPYALSWPAGYILAAG-SDRIVTIYE-S-DGRVH---RIFDYTAP-----HYKEREFTVACSSPSGQAVVVGSY-D- 72 (254)
Q Consensus 6 h~~~v~~l~w~~~~l~s~s-~D~~i~vWd-~-~g~~~---~~~~~~~~-----~~~~~~v~~~a~sPdg~~la~gs~-d- 72 (254)
+...+..++++.+.|++++ .+++|.+|+ . .|... ..+.+... ..+...+.+++|+|||+++++++. +
T Consensus 98 ~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 98 MGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp SSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 4556778888656666665 588999999 3 33221 11111100 011234688999999997766654 3
Q ss_pred cEEEEEecCCCc----c-eeec---CceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEe----------
Q psy12788 73 NIKLFAWSPSKS----V-WEEQ---PNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIW---------- 133 (254)
Q Consensus 73 ~i~l~d~~~~~~----~-~~~~---~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~---------- 133 (254)
.+++|+++.... . .... ..........+..++|+|||++|++++ .++.|.+||+..++...
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC
Confidence 589999875442 1 1100 011223344678999999999988887 68999999986443210
Q ss_pred -----------eceeEEEE-ec-CCeEEEEeCC--CCCceeeEEEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEE--
Q psy12788 134 -----------KGKFEMIY-VS-PSQVLVKPLS--GESKGRGVILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLG-- 194 (254)
Q Consensus 134 -----------~~~~~~~~-~~-~~~~~v~~~~--~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~-- 194 (254)
++++.... .. ++.+.+|++. ++. ....-....+..+..++|+|+++++ +++ .++++.+|
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~--~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT--LTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC--EEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc--EEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 12222222 23 4678888875 332 1111111225678899999998754 455 46789995
Q ss_pred eccCCceeeE
Q psy12788 195 DLHRNLLSEV 204 (254)
Q Consensus 195 dl~~~~~~~~ 204 (254)
|..++++..+
T Consensus 336 d~~~g~~~~~ 345 (361)
T 3scy_A 336 DQATGLLTDI 345 (361)
T ss_dssp CTTTCCEEEC
T ss_pred ECCCCcEeec
Confidence 6667876544
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.54 E-value=2.9e-12 Score=109.91 Aligned_cols=226 Identities=11% Similarity=0.032 Sum_probs=130.4
Q ss_pred CCEEEEecCC--e-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC----CCCEEEEEECCCCCEEEEEeC---------
Q psy12788 9 PPYALSWPAG--Y-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK----EREFTVACSSPSGQAVVVGSY--------- 71 (254)
Q Consensus 9 ~v~~l~w~~~--~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~----~~~v~~~a~sPdg~~la~gs~--------- 71 (254)
.+..++|+|+ . +++.+.+++|.+|| .+++.+..+... .. ...+..++|+|||++|++++.
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS---SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC---CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc---cccccccccccceEECCCCCEEEEEccccccccccc
Confidence 5789999984 3 45666789999999 677777655421 11 223678999999999998873
Q ss_pred ----CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---c---------
Q psy12788 72 ----DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---G--------- 135 (254)
Q Consensus 72 ----d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---~--------- 135 (254)
..+.+||....... .. .....+...+.+++|+|||+ +++++ +.|.+||..+++.... +
T Consensus 121 ~~~~~~i~~~d~~~~~~~-~~--~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEA-KP--VRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSA 194 (349)
T ss_dssp EECCCEEEEEEGGGGGGB-CC--SEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred ccCCCeEEEEECCCcccc-ce--eeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccC
Confidence 34889996532111 10 12223334688999999999 55543 4599999866543321 1
Q ss_pred ------------------eeEEEEecCC-----------eEEEEeCCCCCceeeEEEEecCCCceeEEEEec-CcEEEEE
Q psy12788 136 ------------------KFEMIYVSPS-----------QVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-NDRYLVA 185 (254)
Q Consensus 136 ------------------~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~ 185 (254)
.+.+.+..++ ....++..++. ....-....+..+..++++| +++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THTQEFADLTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc--EEecccccCCCcceeeEecCCCCCEEEE
Confidence 0011111110 12224555553 11111122345678899999 8876655
Q ss_pred ECCCcEEEEeccCCceeeE-eCCCCCCceeEEe--eCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788 186 RTPDTLLLGDLHRNLLSEV-LWPDSGRNEKFYF--DNVTVCLVFNAGELSIIEYGNNEILTCVRIP 248 (254)
Q Consensus 186 ~~d~~i~i~dl~~~~~~~~-~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 248 (254)
. ++.+.+||+.++++... ... .......+ ++..+.+....+.+.+++....+.++.++++
T Consensus 273 ~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 273 V-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp E-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred E-cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 5 88999999999875322 111 00111112 1222222222356777777666777777665
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.54 E-value=4.6e-13 Score=126.76 Aligned_cols=186 Identities=10% Similarity=0.087 Sum_probs=112.0
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC-----CCEEEEeeecCCCCCCCC--------------EEEEEEC
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD-----GRVHRIFDYTAPHYKERE--------------FTVACSS 60 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~-----g~~~~~~~~~~~~~~~~~--------------v~~~a~s 60 (254)
+..|...+..++|+|+ .|+. +.|++|++|| .+ |+..+... .+... +.+++||
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~-----~~~~~~~~g~~~~~ee~~~~~~~~~S 189 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTI-----DGTETLVYGQAVHQREFGIEKGTFWS 189 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCS-----CCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEecc-----CCCCCeEcccchhhhhcCCCceEEEC
Confidence 4456777889999985 5777 4789999999 55 66543221 12222 4789999
Q ss_pred CCCCEEEEEeC---------------------------------C-cEEEEEecCCCcceeecCceecCCCCcEeEEEEe
Q psy12788 61 PSGQAVVVGSY---------------------------------D-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK 106 (254)
Q Consensus 61 Pdg~~la~gs~---------------------------------d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~s 106 (254)
|||++||+++. + .+++||..... .... .....+...+.+++||
T Consensus 190 pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~--~~~~-~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 190 PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK--TVYL-QTGEPKEKFLTNLSWS 266 (706)
T ss_dssp TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE--EEEC-CCCSCTTCEEEEEEEC
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc--eEee-ccCCCCceeEeeEEEE
Confidence 99999999872 2 36677754322 1110 0111244579999999
Q ss_pred cCCCeEEEeecCC-----cEEEEeeeee-eeE--e-e--ce-----eEEEEec--CCe----------EEEEeCC-CCCc
Q psy12788 107 RDGSRIACGGLCG-----SVELFESVLK-RTI--W-K--GK-----FEMIYVS--PSQ----------VLVKPLS-GESK 157 (254)
Q Consensus 107 pdG~~la~g~~dg-----~v~iwd~~~~-~~~--~-~--~~-----~~~~~~~--~~~----------~~v~~~~-~~~~ 157 (254)
|||++|++++.++ .|.+||..++ +.. . . .. ..+.+++ +++ ..+|.+. ++.
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~- 345 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR- 345 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-
Confidence 9999999988876 8999998665 221 1 0 00 1134444 443 3344433 221
Q ss_pred eeeEEEEecCCCceeE-EEEecCcEEE-EEECC-C----cEEEEeccCCc
Q psy12788 158 GRGVILKSQYGYEITD-VAIMGNDRYL-VARTP-D----TLLLGDLHRNL 200 (254)
Q Consensus 158 ~~~~~l~s~~~~~i~~-i~~~~~~~~~-v~~~d-~----~i~i~dl~~~~ 200 (254)
....+ ......+.. ++|+++++.+ +++.+ + .+..||+.+++
T Consensus 346 -~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 346 -LIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp -EEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred -EEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 11112 222335666 7999988544 44443 3 56677887765
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.53 E-value=5e-13 Score=126.64 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=113.1
Q ss_pred CCEEEEecCC--eEEEEeCC---------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788 9 PPYALSWPAG--YILAAGSD---------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKL 76 (254)
Q Consensus 9 ~v~~l~w~~~--~l~s~s~D---------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l 76 (254)
.|..++|+|+ +|++++.| +.+++|| .+|++ +.+. ... +|...+..++|||||+.||.++...+++
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~~-~~~~~~~~~~~SPdG~~la~~~~~~i~~ 138 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD-PPE-VSNAKLQYAGWGPKGQQLIFIFENNIYY 138 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC-CTT-CCSCCCSBCCBCSSTTCEEEEETTEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eecc-CCc-cccccccccEECCCCCEEEEEECCeEEE
Confidence 4899999985 68888765 6788999 56654 3332 122 3445588999999999999998777888
Q ss_pred EEecCCCcceeecCceecCCCC------------------cEeEEEEecCCCeEEEeecCC-------------------
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLY------------------TISALSWKRDGSRIACGGLCG------------------- 119 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~------------------~i~~l~~spdG~~la~g~~dg------------------- 119 (254)
|+........ ....+.. .+.+++|||||++||+++.++
T Consensus 139 ~~~~~g~~~~-----~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 139 CAHVGKQAIR-----VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp ESSSSSCCEE-----EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred EECCCCceEE-----EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 8865432211 0111111 237899999999999998654
Q ss_pred ---------------cEEEEeeeeeee--Eee----------ceeEEEEecCC--------------eEEEEeCCCCCce
Q psy12788 120 ---------------SVELFESVLKRT--IWK----------GKFEMIYVSPS--------------QVLVKPLSGESKG 158 (254)
Q Consensus 120 ---------------~v~iwd~~~~~~--~~~----------~~~~~~~~~~~--------------~~~v~~~~~~~~~ 158 (254)
.|++||+.+++. ... ....+.+++++ .+.+||+.++.
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-- 291 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-- 291 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--
Confidence 789999865542 111 01123333333 45667777763
Q ss_pred eeEEEEecCCCce----eEEEEecCcEEEE---EECCC------cEEEEe-ccCCc
Q psy12788 159 RGVILKSQYGYEI----TDVAIMGNDRYLV---ARTPD------TLLLGD-LHRNL 200 (254)
Q Consensus 159 ~~~~l~s~~~~~i----~~i~~~~~~~~~v---~~~d~------~i~i~d-l~~~~ 200 (254)
....+.......+ ..++|+|++++++ ...++ .+.+|| +.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 2222222222333 3789999887433 33455 577788 44444
No 151
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.52 E-value=5.2e-13 Score=126.94 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=112.9
Q ss_pred CEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCc
Q psy12788 10 PYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS 84 (254)
Q Consensus 10 v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~ 84 (254)
+.+++|+|+ .|++++. ++|++|| ..++ ....+ . .+...+..++|||||++||.++.+.+++||.....
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l----~-~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~- 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL----T-HGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR- 183 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC----C-CSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTE-
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc----c-cCCcccccccCCCCCCEEEEEeCCcEEEEecCCCC-
Confidence 788999985 6787776 8999999 4551 33222 2 56678999999999999999987778899865322
Q ss_pred ceeecCceecCCCC----------------cEeEEEEecCCCeEEEeecCC-----------------------------
Q psy12788 85 VWEEQPNKTIPNLY----------------TISALSWKRDGSRIACGGLCG----------------------------- 119 (254)
Q Consensus 85 ~~~~~~~~~~~~~~----------------~i~~l~~spdG~~la~g~~dg----------------------------- 119 (254)
... . ...+.. .+.+++|||||++||+++.|+
T Consensus 184 -~~~--~-~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 184 -QMQ--L-TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp -EEE--C-CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred -EEE--e-ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 111 0 011111 257899999999999998876
Q ss_pred ----cEEEEeeee-eeeEe-----------------eceeEEEEec-----CCeEEEEeCCCCCceeeEEEEecCCC---
Q psy12788 120 ----SVELFESVL-KRTIW-----------------KGKFEMIYVS-----PSQVLVKPLSGESKGRGVILKSQYGY--- 169 (254)
Q Consensus 120 ----~v~iwd~~~-~~~~~-----------------~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~~--- 169 (254)
.|.+||+.+ ++... ++++.+.... +..+.+||+.++. ....+......
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQ--QRVLAHETSPTWVP 337 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCC--EEEEEEEECSSCCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCc--eEEEEEcCCCCcCC
Confidence 788889766 54321 1111111111 2357778888874 33333332222
Q ss_pred ceeEEEEecCcEEEEE-ECCCcEEEEecc
Q psy12788 170 EITDVAIMGNDRYLVA-RTPDTLLLGDLH 197 (254)
Q Consensus 170 ~i~~i~~~~~~~~~v~-~~d~~i~i~dl~ 197 (254)
.+..++|+++++++.. ..++...||.+.
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 3568999998876554 456667777544
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.50 E-value=8.2e-13 Score=131.02 Aligned_cols=187 Identities=10% Similarity=0.003 Sum_probs=121.3
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-------
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD------- 72 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d------- 72 (254)
+.+|...+..++|+|+ .|++++.|+.|++|| .+|+....+. +|...+.+++|||||++||+++.+
T Consensus 374 l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 374 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----CCCCCccceEECCCCCeEEEEecCccccccC
Confidence 4467788999999985 799999999999999 6777765543 577788999999999999887642
Q ss_pred ----cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---ceeEEEEecCC
Q psy12788 73 ----NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---GKFEMIYVSPS 145 (254)
Q Consensus 73 ----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~ 145 (254)
.+++||..... . .....+...+.+++|+|||++|+.++.++...+|+......... ..+.+.+..+.
T Consensus 449 ~~~~~i~l~d~~~g~--~----~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRK--I----FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 522 (1045)
T ss_dssp CCEEEEEEEETTTTE--E----EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred CCCCeEEEEECCCCc--E----EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence 47888864321 1 11223455788999999999999999999999998642221111 11222211111
Q ss_pred eE-------------EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE------------E--CCCcEEEEeccC
Q psy12788 146 QV-------------LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA------------R--TPDTLLLGDLHR 198 (254)
Q Consensus 146 ~~-------------~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~------------~--~d~~i~i~dl~~ 198 (254)
.. ..+++.... .+......+...+..+++++++++++. + .+.++.+||+.+
T Consensus 523 ~~~~~~~~~~~~~~~~~~d~~g~~--~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~ 600 (1045)
T 1k32_A 523 PNPTKLVPRSMTSEAGEYDLNDMY--KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 600 (1045)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGG--GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred CCccccCcCccccccccccccCHh--HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCC
Confidence 10 012222110 111111223456889999998875553 1 234788889998
Q ss_pred Ccee
Q psy12788 199 NLLS 202 (254)
Q Consensus 199 ~~~~ 202 (254)
++..
T Consensus 601 ~~~~ 604 (1045)
T 1k32_A 601 RKVT 604 (1045)
T ss_dssp CCEE
T ss_pred CcEE
Confidence 8753
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.50 E-value=4.3e-12 Score=117.74 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=117.1
Q ss_pred CCCCEEEEecCC--eEEEEeC-CCcEEEEeCCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeC---C-cEEEEE
Q psy12788 7 PVPPYALSWPAG--YILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSY---D-NIKLFA 78 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~-D~~i~vWd~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~---d-~i~l~d 78 (254)
..+|++++|+|+ .||.++. |++++||+.+|...+.+. .+. ..+.+++|||| +++++++. + ..++|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-----REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-----cccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 457999999874 7888887 999999994444443332 344 57899999999 77777765 3 467888
Q ss_pred ecC--CCcceeecCceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEeeeeeeeEe-------------eceeEEEEe
Q psy12788 79 WSP--SKSVWEEQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESVLKRTIW-------------KGKFEMIYV 142 (254)
Q Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~~~~~~~-------------~~~~~~~~~ 142 (254)
++. .... ..+.....+...+|+|||+.+ ++.+.++.+.+||+.+++... ++++.+...
T Consensus 95 ~~~~~~g~~------~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 95 VNTSRPGEE------QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG 168 (582)
T ss_dssp EETTSTTCC------EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE
T ss_pred EeccCCCcc------ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE
Confidence 765 3221 112222334567999999743 333445556699987654321 223333222
Q ss_pred cC----CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCC--cEEEEeccCCcee
Q psy12788 143 SP----SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPD--TLLLGDLHRNLLS 202 (254)
Q Consensus 143 ~~----~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~--~i~i~dl~~~~~~ 202 (254)
.+ .++.++|+.++. ...+ ..+...+..++|+|++++++. ..++ .|++||+.+++..
T Consensus 169 ~~~~~~~~i~~~d~~~g~---~~~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGG---LRVF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEETTEEEEEEEETTTCC---CEEE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred EcCCCCeEEEEEcCCCCC---ceEe-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 22 457788888773 3344 334457899999999987664 3466 7999999987653
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=127.75 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=77.0
Q ss_pred EEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCCCCEEEEEeC---------C-cEE
Q psy12788 11 YALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPSGQAVVVGSY---------D-NIK 75 (254)
Q Consensus 11 ~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPdg~~la~gs~---------d-~i~ 75 (254)
..++|+|+ .++..+.|++|++|| .+|++.+.+. .+.. .+.+++|||||++||+++. + .++
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 37899985 566666799999999 6677665443 2221 4889999999999998875 4 478
Q ss_pred EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788 76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 130 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~ 130 (254)
+||..... ... ...+ ...+..++|||||++||.+. ++.|++||+.+++
T Consensus 94 ~~d~~~g~--~~~--~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 94 IYDLSNGE--FVR--GNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp EEETTTTE--ECC--SSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred EEECCCCc--ccc--ceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 88854322 100 0111 24588999999999999985 8899999976543
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.45 E-value=4.5e-12 Score=107.98 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=85.6
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC-CEEEEEECCCCCEEEEE-eCC-cEEEEEecCCCcceeecCceec
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-EFTVACSSPSGQAVVVG-SYD-NIKLFAWSPSKSVWEEQPNKTI 94 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-~v~~~a~sPdg~~la~g-s~d-~i~l~d~~~~~~~~~~~~~~~~ 94 (254)
+|++++.|++|++|| .+++.++.+.. ++.. .+..++|+|+|++++++ +.+ .+.+||......... ...
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~ 74 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR----IDL 74 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE----EEC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee----EEc
Confidence 688999999999999 67887766642 2211 47789999999876554 444 488998654332211 111
Q ss_pred CC----CCcEeEEEEecCCCeEEEee------------cCCcEEEEeeeeeeeEee-----ceeEEEEec--------CC
Q psy12788 95 PN----LYTISALSWKRDGSRIACGG------------LCGSVELFESVLKRTIWK-----GKFEMIYVS--------PS 145 (254)
Q Consensus 95 ~~----~~~i~~l~~spdG~~la~g~------------~dg~v~iwd~~~~~~~~~-----~~~~~~~~~--------~~ 145 (254)
.+ ...+..++|+|||++|++++ .++.|.+||..+++.... ....+.+.+ ++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 154 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR 154 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCC
Confidence 11 11567899999999999986 579999999865543221 112222222 45
Q ss_pred eEEEEeCCCC
Q psy12788 146 QVLVKPLSGE 155 (254)
Q Consensus 146 ~~~v~~~~~~ 155 (254)
.+.++|+.++
T Consensus 155 ~i~~~d~~~~ 164 (337)
T 1pby_B 155 DLHVMDPEAG 164 (337)
T ss_dssp SEEEEETTTT
T ss_pred eEEEEECCCC
Confidence 6788898877
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.43 E-value=3.1e-12 Score=126.84 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=108.7
Q ss_pred CCCCCEEEEec-CC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC-CEEEEEECCCCCEEEEEeCCc-EE-EEE
Q psy12788 6 HPVPPYALSWP-AG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-EFTVACSSPSGQAVVVGSYDN-IK-LFA 78 (254)
Q Consensus 6 h~~~v~~l~w~-~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-~v~~~a~sPdg~~la~gs~d~-i~-l~d 78 (254)
|...+..++|+ |+ .|++++ ++.+++|+ ..++.. .+ . .|.. .+..++|+ ||+.|+.++.+. +. +|+
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~----~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d 365 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KV----P-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD 365 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-EC----S-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-Ec----c-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence 44568999999 85 577777 78999999 455443 23 2 4566 79999999 999999988763 55 566
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG 158 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (254)
... ..... ...+...+..++|||||++||+++.++.|++||+.+++..
T Consensus 366 ~~~--~~~~~----l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~-------------------------- 413 (1045)
T 1k32_A 366 YRT--GKAEK----FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT-------------------------- 413 (1045)
T ss_dssp TTT--CCEEE----CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------------------
T ss_pred CCC--CCceE----ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE--------------------------
Confidence 432 21111 1144568999999999999999999999999987543321
Q ss_pred eeEEEEecCCCceeEEEEecCcEEEE-EECC----------CcEEEEeccCCce
Q psy12788 159 RGVILKSQYGYEITDVAIMGNDRYLV-ARTP----------DTLLLGDLHRNLL 201 (254)
Q Consensus 159 ~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d----------~~i~i~dl~~~~~ 201 (254)
.+...+...+..++|+|++++++ ++.+ ..+++||+.++++
T Consensus 414 ---~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 414 ---VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp ---EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred ---EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 12112345688999999998665 3333 3899999998764
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.42 E-value=1.3e-11 Score=105.81 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=74.8
Q ss_pred EEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CC-cEEEEEecCCCccee
Q psy12788 13 LSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YD-NIKLFAWSPSKSVWE 87 (254)
Q Consensus 13 l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d-~i~l~d~~~~~~~~~ 87 (254)
+++++ ..+++++.|++|++|| .+++.++.+.. +....+..++|+|+|+++++++ .+ .+.+||....+....
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 44554 3688999999999999 67887776642 1212467899999999765544 45 488888653322111
Q ss_pred ecCceecCC-----CCcEeEEEEecCCCeEEEeecC------------CcEEEEeeee
Q psy12788 88 EQPNKTIPN-----LYTISALSWKRDGSRIACGGLC------------GSVELFESVL 128 (254)
Q Consensus 88 ~~~~~~~~~-----~~~i~~l~~spdG~~la~g~~d------------g~v~iwd~~~ 128 (254)
....+ ...+..++|+|||++|++++.+ +.|.+||+.+
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 81 ----ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp ----EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred ----EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 11111 1237889999999999999876 8899999765
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.40 E-value=1.7e-11 Score=117.25 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=112.2
Q ss_pred EEEEecCC--eEEEEeCC---------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEE
Q psy12788 11 YALSWPAG--YILAAGSD---------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFA 78 (254)
Q Consensus 11 ~~l~w~~~--~l~s~s~D---------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d 78 (254)
..++|+|+ .|+.++.| +.+.+|| .+|++. . +. .+...+..++|||||+.||.++...+++|+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~----l~-~~~~~~~~~~~SPdG~~la~~~~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T----EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVKI 138 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-C----SS-CCCTTEEEEEECSSTTCEEEEETTEEEEES
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-E----cc-cCCCcceeeEECCCCCEEEEEECCeEEEEE
Confidence 44788985 68888776 4566999 555433 2 22 566789999999999999998766788888
Q ss_pred ecCCCcceeecCceecCCC-----------------CcEeEEEEecCCCeEEEeecCCc-EEEEeeeeeee---Eeecee
Q psy12788 79 WSPSKSVWEEQPNKTIPNL-----------------YTISALSWKRDGSRIACGGLCGS-VELFESVLKRT---IWKGKF 137 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-----------------~~i~~l~~spdG~~la~g~~dg~-v~iwd~~~~~~---~~~~~~ 137 (254)
....... .. ..-.+. ....++.|||||++||.++.|.+ +.+|++..... .+....
T Consensus 139 ~~~~~~~-~l---t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (740)
T 4a5s_A 139 EPNLPSY-RI---TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (740)
T ss_dssp STTSCCE-EC---CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred CCCCceE-EE---cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence 6432211 10 000111 12245899999999999987665 88888642211 111122
Q ss_pred EEEEecCC------eEEEEeCCC---CCceeeEEEEe-----cCCCceeEEEEecCcEEEEEEC-----CCcEEEEeccC
Q psy12788 138 EMIYVSPS------QVLVKPLSG---ESKGRGVILKS-----QYGYEITDVAIMGNDRYLVART-----PDTLLLGDLHR 198 (254)
Q Consensus 138 ~~~~~~~~------~~~v~~~~~---~~~~~~~~l~s-----~~~~~i~~i~~~~~~~~~v~~~-----d~~i~i~dl~~ 198 (254)
.+.|...+ ++.+||+.+ +.......+.. .....+..++|+|++++++... +..|.+||+.+
T Consensus 215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 23333221 578899988 62001122221 1345688999999998655321 23689999998
Q ss_pred Cc
Q psy12788 199 NL 200 (254)
Q Consensus 199 ~~ 200 (254)
++
T Consensus 295 g~ 296 (740)
T 4a5s_A 295 SS 296 (740)
T ss_dssp TT
T ss_pred Cc
Confidence 76
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.37 E-value=2.4e-11 Score=116.32 Aligned_cols=109 Identities=11% Similarity=0.177 Sum_probs=76.6
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC-----CEEEEEECCCCCEEEEEeCCc------
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-----EFTVACSSPSGQAVVVGSYDN------ 73 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-----~v~~~a~sPdg~~la~gs~d~------ 73 (254)
.....++|+|+ +|+++ |++|++|| .+|++...+. +|.. ....++|||||++||.++.++
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE-----NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC-----TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe-----chhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence 34668999985 45554 99999999 7787765554 3322 234589999999999988642
Q ss_pred ----EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788 74 ----IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR 130 (254)
Q Consensus 74 ----i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~ 130 (254)
+.+||+.. +... ....+...+...+|||||++||.+ .++.|.+||...++
T Consensus 90 ~~~~~~~~d~~~--~~~~----~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 90 YTASYDIYDLNK--RQLI----TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEEEEEETTT--TEEC----CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred cceEEEEEECCC--CcEE----EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 34777543 2211 112234579999999999999988 57899999976543
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=122.32 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=109.4
Q ss_pred CCEEEEecCC--eEEEEeC---------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788 9 PPYALSWPAG--YILAAGS---------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKL 76 (254)
Q Consensus 9 ~v~~l~w~~~--~l~s~s~---------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l 76 (254)
.+.+++|+|+ .|+.++. |++|++|| .+|+.+.. . .....+..++|||||+.||.++.+.+++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----~--~l~~~~~~~~~SPDG~~la~~~~~~i~~ 134 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----N--ELPRPIQYLCWSPVGSKLAYVYQNNIYL 134 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----S--CCCSSBCCEEECSSTTCEEEEETTEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc----e--ecCcccccceECCCCCEEEEEECCeEEE
Confidence 4789999985 6887776 78999999 55554200 0 1224688899999999999998667889
Q ss_pred EEecCCCcceeecCceecCCCC-----------------cEeEEEEecCCCeEEEeecC-CcEEEEeeeeee-eEeecee
Q psy12788 77 FAWSPSKSVWEEQPNKTIPNLY-----------------TISALSWKRDGSRIACGGLC-GSVELFESVLKR-TIWKGKF 137 (254)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~-----------------~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~-~~~~~~~ 137 (254)
|+....... . .....+.. ...+++|||||++||+++.| +.+.+|.+.... ..+....
T Consensus 135 ~~~~~g~~~--~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 210 (719)
T 1z68_A 135 KQRPGDPPF--Q--ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI 210 (719)
T ss_dssp ESSTTSCCE--E--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred EeCCCCCcE--E--EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence 986543221 0 00001111 12589999999999999875 555666442110 0011111
Q ss_pred EEEEec------CCeEEEEeCCCCCceee--EEEE-----ecCCCceeEEEEecCcEEEEEECC-----CcEEEEe----
Q psy12788 138 EMIYVS------PSQVLVKPLSGESKGRG--VILK-----SQYGYEITDVAIMGNDRYLVARTP-----DTLLLGD---- 195 (254)
Q Consensus 138 ~~~~~~------~~~~~v~~~~~~~~~~~--~~l~-----s~~~~~i~~i~~~~~~~~~v~~~d-----~~i~i~d---- 195 (254)
.+.|.. ..++.+||+.++. .. +.+. ..+...+..++|+|++++++...+ ..|.+||
T Consensus 211 ~~~yp~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 211 NIPYPKAGAKNPVVRIFIIDTTYPA--YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp EEECCBTTSCCCEEEEEEEESSCHH--HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred eecCCCCCCCCCeeEEEEEECCCCC--ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence 222221 1267788988763 10 1221 123446889999999877655322 1488899
Q ss_pred ccCCc
Q psy12788 196 LHRNL 200 (254)
Q Consensus 196 l~~~~ 200 (254)
+.+++
T Consensus 289 ~~~g~ 293 (719)
T 1z68_A 289 WQTWD 293 (719)
T ss_dssp SSSEE
T ss_pred CCCCc
Confidence 77664
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.36 E-value=8.7e-11 Score=102.85 Aligned_cols=115 Identities=8% Similarity=0.057 Sum_probs=76.2
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCE--EEEEe-----------
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQA--VVVGS----------- 70 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~--la~gs----------- 70 (254)
..+..++|+|+ +|++++.+ +|.+|+ . +|++.+....... ..+..++|+|||++ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~----g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG----GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC----SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC----CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 46888999984 68888888 999999 4 7766543332211 22456899999994 55553
Q ss_pred --CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeee
Q psy12788 71 --YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESV 127 (254)
Q Consensus 71 --~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~ 127 (254)
.++ +++|+++...............+...+.+++|||||++|++++. ++.|++||..
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 454 88999864322111100000123357899999999999988764 6789999975
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.34 E-value=5e-11 Score=110.54 Aligned_cols=180 Identities=12% Similarity=0.019 Sum_probs=112.1
Q ss_pred ccccCC-CCCEEEEecCCe-EEEEeC---CCcEEEEe--C--CCCEEEEeeecCCCCCCCCEEEEEECCCCC--EEEEEe
Q psy12788 2 RVVQHP-VPPYALSWPAGY-ILAAGS---DRIVTIYE--S--DGRVHRIFDYTAPHYKEREFTVACSSPSGQ--AVVVGS 70 (254)
Q Consensus 2 ~l~~h~-~~v~~l~w~~~~-l~s~s~---D~~i~vWd--~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~--~la~gs 70 (254)
++..|. ..+..++|+|+. +++++. +...++|. . .|... .+. .. ..+...+|+|||+ ++++++
T Consensus 58 ~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~-----~~-~~~~~~~~s~dg~~~~~~s~~ 130 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE-----AV-KPMRILSGVDTGEAVVFTGAT 130 (582)
T ss_dssp ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT-----TS-CSBEEEEEEECSSCEEEEEEC
T ss_pred eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-ccc-----CC-CCceeeeeCCCCCeEEEEecC
Confidence 355566 578999999974 555554 45566764 5 56544 221 11 2344667888875 566666
Q ss_pred CCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeeeeeEe-------------
Q psy12788 71 YDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKRTIW------------- 133 (254)
Q Consensus 71 ~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~~~~~------------- 133 (254)
.+++.+||+..... .. . ..+.. .+++|||||++||+++.+ +.|++||+.+++...
T Consensus 131 ~~~~~l~d~~~g~~--~~--l--~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~ 202 (582)
T 3o4h_A 131 EDRVALYALDGGGL--RE--L--ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASI 202 (582)
T ss_dssp SSCEEEEEEETTEE--EE--E--EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEE
T ss_pred CCCceEEEccCCcE--EE--e--ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceE
Confidence 77777999764321 11 1 11112 789999999999988877 789999976543221
Q ss_pred --eceeEEEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEE--------EecCcEEE-EEECCCcEEEEeccCCc
Q psy12788 134 --KGKFEMIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVA--------IMGNDRYL-VARTPDTLLLGDLHRNL 200 (254)
Q Consensus 134 --~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~--------~~~~~~~~-v~~~d~~i~i~dl~~~~ 200 (254)
++++......++ ++.+||+.++. .. +...+...+..++ |+|++.++ +++.++++.||++ |+
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~ 276 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE 276 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC
Confidence 112222222333 67788887773 33 3334445677777 99988544 4667889999999 65
Q ss_pred ee
Q psy12788 201 LS 202 (254)
Q Consensus 201 ~~ 202 (254)
+.
T Consensus 277 ~~ 278 (582)
T 3o4h_A 277 RV 278 (582)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.33 E-value=2.9e-10 Score=99.44 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCCCCEEEEecCC--eEEEEeC-CCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEE
Q psy12788 6 HPVPPYALSWPAG--YILAAGS-DRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFA 78 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~-D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d 78 (254)
+...+..++|+|+ +|+++.. +++|++|| . +|+....-..... .+...+..++|+|||+++++++. + .+.+|+
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC-CCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence 4567899999985 5666553 67899999 5 6765322111111 13456899999999999888775 3 488999
Q ss_pred ecCCCcceee--cCceecCC----CC-------cEeEEE-EecCCCeEEEeecCC------cEEEEeee-eeeeEeecee
Q psy12788 79 WSPSKSVWEE--QPNKTIPN----LY-------TISALS-WKRDGSRIACGGLCG------SVELFESV-LKRTIWKGKF 137 (254)
Q Consensus 79 ~~~~~~~~~~--~~~~~~~~----~~-------~i~~l~-~spdG~~la~g~~dg------~v~iwd~~-~~~~~~~~~~ 137 (254)
++...+.... ......+. .. .+..++ |||||++|++++.+. .|.+|++. .++...
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~---- 297 (365)
T 1jof_A 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK---- 297 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE----
T ss_pred EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE----
Confidence 8653332210 00111111 11 488999 999999998877543 78899863 222110
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec---CcEEE-EEEC-CCcEEEEeccCCce
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG---NDRYL-VART-PDTLLLGDLHRNLL 201 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~---~~~~~-v~~~-d~~i~i~dl~~~~~ 201 (254)
...+....+..+..++|+| +++++ +++. ++++.||++....+
T Consensus 298 ----------------------~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 298 ----------------------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp ----------------------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred ----------------------eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 0000111233456788998 67655 4554 47999999877643
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.31 E-value=1.8e-09 Score=90.66 Aligned_cols=182 Identities=14% Similarity=0.082 Sum_probs=116.1
Q ss_pred CCCCCEEEEec-C-CeEEEEeC--CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEec
Q psy12788 6 HPVPPYALSWP-A-GYILAAGS--DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWS 80 (254)
Q Consensus 6 h~~~v~~l~w~-~-~~l~s~s~--D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~ 80 (254)
|...|..++++ + ..|+.+.. ++.|++||.+|+.+..+.. .+...+.+++++|+|+++++...+ ++++|+.+
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence 44578899993 4 34554443 7899999988888766631 233568999999999988877655 48788732
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-e--e----ceeEEEEec----------
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-W--K----GKFEMIYVS---------- 143 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-~--~----~~~~~~~~~---------- 143 (254)
...... .....+...+..|+++|||+++++...++.|++||...+... . . ....+.+..
T Consensus 151 --g~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 151 --GNVLHK--FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp --SCEEEE--EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred --CCEEEE--eCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence 221111 001123346899999999998888888999999996322111 0 1 112222222
Q ss_pred CC-eEEEEeCCCCCceeeEEEEecC-CCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788 144 PS-QVLVKPLSGESKGRGVILKSQY-GYEITDVAIMGNDRYLVARTPDTLLLGDLHR 198 (254)
Q Consensus 144 ~~-~~~v~~~~~~~~~~~~~l~s~~-~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~ 198 (254)
++ .+.+++.. +. ....+.... ...+..+++++++++++++.+++|++|++..
T Consensus 227 ~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 227 NNFNLTIFTQD-GQ--LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp SSCEEEEECTT-SC--EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CCEEEEEECCC-CC--EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 32 56666643 21 222222222 2247789999988888888889999998754
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.30 E-value=1.5e-09 Score=94.21 Aligned_cols=117 Identities=13% Similarity=0.243 Sum_probs=74.0
Q ss_pred CCCCCEEEEecCC--eEEEEeCC----CcEEEEe--CC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-E
Q psy12788 6 HPVPPYALSWPAG--YILAAGSD----RIVTIYE--SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-I 74 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D----~~i~vWd--~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i 74 (254)
|...|..++|+|+ .|++++.+ +.|.+|+ .. |+.. .+... . .+......+++ +|++|++++. ++ +
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-~~~~~-~-~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH-LLNTQ-K-TMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE-EEEEE-E-CSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE-EeeEe-c-cCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4567788999984 68888876 7999997 33 5432 22111 1 23346777888 8988888774 44 8
Q ss_pred EEEEecCCCcceeecCceecC---------CCCcEeEEEEecCCCeEEEeec-CCcEEEEeee
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIP---------NLYTISALSWKRDGSRIACGGL-CGSVELFESV 127 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~---------~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~ 127 (254)
.+|++................ ....+.+++|+|||++|++++. ++.|.+|++.
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence 999986433211110000000 1224688999999997766664 7899999864
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.29 E-value=9.7e-09 Score=86.11 Aligned_cols=191 Identities=15% Similarity=0.104 Sum_probs=118.3
Q ss_pred cCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecC--CCCCCCCEEEEEE-CCCCCEEEEEeC-C-cEEEE
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTA--PHYKEREFTVACS-SPSGQAVVVGSY-D-NIKLF 77 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~--~~~~~~~v~~~a~-sPdg~~la~gs~-d-~i~l~ 77 (254)
+|-..|.+++++++ .+++.+.++.|++||.+|+.+..+.... . ++...+..+++ +++|+++++... + .+++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD-SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST-TCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCc-ccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 45567899999873 5666678899999997788776663211 1 23456899999 688888777642 4 57788
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-e------eceeEEEEec-------
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-W------KGKFEMIYVS------- 143 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-~------~~~~~~~~~~------- 143 (254)
+. ...... .....+...+..++++|+|+++++...++.|.+||....... . .....+.+..
T Consensus 106 d~--~g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 106 NQ--YGQFVR---KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp CT--TSCEEE---EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred CC--CCcEEE---EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 72 122111 111123346899999999998888888899999995321111 0 0112223222
Q ss_pred ---CCeEEEEeCCCCCceeeEEEEecCC--CceeEEEEecCcEEEEEEC-CC-cEEEEeccCCceeeEe
Q psy12788 144 ---PSQVLVKPLSGESKGRGVILKSQYG--YEITDVAIMGNDRYLVART-PD-TLLLGDLHRNLLSEVL 205 (254)
Q Consensus 144 ---~~~~~v~~~~~~~~~~~~~l~s~~~--~~i~~i~~~~~~~~~v~~~-d~-~i~i~dl~~~~~~~~~ 205 (254)
++.+.+++.... .+......+ ..+..|+++++++++++.. ++ .|.+||.....+..+.
T Consensus 181 ~~~~~~i~~~~~~g~----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQ----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp EGGGTEEEEEETTCC----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred ECCCCEEEEEcCCCC----EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 345666665322 121112222 3678999999888777665 54 8999996554444443
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.27 E-value=2.3e-08 Score=86.22 Aligned_cols=219 Identities=8% Similarity=0.067 Sum_probs=126.8
Q ss_pred CCCEEEEecCC--eEEEEeCC------------------------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC
Q psy12788 8 VPPYALSWPAG--YILAAGSD------------------------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS 60 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D------------------------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s 60 (254)
..|.+|+++++ .+++.+.+ ++|.+|| .+|+.++.+. . ++-.....++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~-~~~~~p~gia~d 99 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG---K-NLFYLPHGLSID 99 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---T-TTCSSEEEEEEC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---C-CccCCceEEEEC
Confidence 46889999984 56666666 3799999 5688876553 1 334578999999
Q ss_pred CCCCEEEEEeCC-cEEEEEecCCC-cceeecCcee----cCCCCcEeEEEEec-CCCeEEEee-cCCcEEEEeeeeeeeE
Q psy12788 61 PSGQAVVVGSYD-NIKLFAWSPSK-SVWEEQPNKT----IPNLYTISALSWKR-DGSRIACGG-LCGSVELFESVLKRTI 132 (254)
Q Consensus 61 Pdg~~la~gs~d-~i~l~d~~~~~-~~~~~~~~~~----~~~~~~i~~l~~sp-dG~~la~g~-~dg~v~iwd~~~~~~~ 132 (254)
|+|+++++...+ ++++|+.+... .......... ..+......|+++| +|+++++.+ .++.|++||.. ++..
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~ 178 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFV 178 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEE
Confidence 999988887766 48888853221 1111100000 12234688999999 888888886 69999999942 2221
Q ss_pred ee----------------ceeEEEEecC-C----------eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEE
Q psy12788 133 WK----------------GKFEMIYVSP-S----------QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLV 184 (254)
Q Consensus 133 ~~----------------~~~~~~~~~~-~----------~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v 184 (254)
.. .+.-+.+..+ + .+.+++..++. ....+. ...+..+..++++| +..++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEeccccCCCcceeeecC-CEEEE
Confidence 10 0223344333 3 45555655442 111111 12345677888888 43333
Q ss_pred E--------ECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEeecCe
Q psy12788 185 A--------RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYGNNE 240 (254)
Q Consensus 185 ~--------~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~ 240 (254)
. ..+.++++||+.++++...--. ..+. + .....+++++ |.+.+.+.+.+.
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-~~~~--~---~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-VRKH--F---DMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECC-SSSC--C---SSEEEEEECTTSEEEEEESSSCC
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-CCCc--c---CCeeEEEECCCCCEEEEECCCCE
Confidence 2 1234899999998887544211 1111 1 1123455655 555555555544
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.25 E-value=5.2e-10 Score=104.97 Aligned_cols=192 Identities=10% Similarity=0.033 Sum_probs=117.4
Q ss_pred cccCCCCCEEEEecCCe--EEEE--eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEE---------EEEEC--CCCCE-
Q psy12788 3 VVQHPVPPYALSWPAGY--ILAA--GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFT---------VACSS--PSGQA- 65 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~~--l~s~--s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~---------~~a~s--Pdg~~- 65 (254)
+.+|...+..++|+++. +++. +.|++.+||. ..+...+.+. .+...+. ..+|+ |||+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL-----PAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS-----CTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC-----CCCccccccccccCCccceeeeecCCCeE
Confidence 55788999999999974 4454 4588899998 5444443332 3444444 55555 99998
Q ss_pred EEEEeCCcEEEEEecCC--C-cceeecCceecC---CCCcEeEEEEecCCCeEEEeecC----------CcEEEEeeee-
Q psy12788 66 VVVGSYDNIKLFAWSPS--K-SVWEEQPNKTIP---NLYTISALSWKRDGSRIACGGLC----------GSVELFESVL- 128 (254)
Q Consensus 66 la~gs~d~i~l~d~~~~--~-~~~~~~~~~~~~---~~~~i~~l~~spdG~~la~g~~d----------g~v~iwd~~~- 128 (254)
||..+....+||.++.. . +.... ..... +...+.+++|||||++||+++.+ ..|.+||+..
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 88776545557776643 1 21111 11111 34578899999999999999887 5899999866
Q ss_pred -----eee--Ee-e-------------ceeEEEEecC--------CeEEEEeCC-CCCceeeEEEEecCCCceeEEEEec
Q psy12788 129 -----KRT--IW-K-------------GKFEMIYVSP--------SQVLVKPLS-GESKGRGVILKSQYGYEITDVAIMG 178 (254)
Q Consensus 129 -----~~~--~~-~-------------~~~~~~~~~~--------~~~~v~~~~-~~~~~~~~~l~s~~~~~i~~i~~~~ 178 (254)
++. +. . +++......+ .++.++|+. ++.......+...+...+..+.|+|
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 422 11 1 1111111111 256777776 3410022333333456788999999
Q ss_pred CcEEEEEE-CCC--cEEEEeccCCce
Q psy12788 179 NDRYLVAR-TPD--TLLLGDLHRNLL 201 (254)
Q Consensus 179 ~~~~~v~~-~d~--~i~i~dl~~~~~ 201 (254)
+++++..+ .++ .|.+||+.+++.
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred CCeEEEEECCCCCeEEEEEECCCCce
Confidence 88755544 455 567778767654
No 169
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.25 E-value=1.2e-09 Score=92.50 Aligned_cols=168 Identities=11% Similarity=0.134 Sum_probs=114.5
Q ss_pred CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecC
Q psy12788 18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIP 95 (254)
Q Consensus 18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~ 95 (254)
+.|++++.|+.|++|| .+|+.+.++. .+. ..+.+++++|+|+++++ ..++++.||. ..+..|+.. .+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~-----~~~~~~~~~~~~~pdG~ilvs-~~~~V~~~d~-~G~~~W~~~----~~ 74 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYP-----LEKGWECNSVAATKAGEILFS-YSKGAKMITR-DGRELWNIA----AP 74 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEE-----CCTTCCCCEEEECTTSCEEEE-CBSEEEEECT-TSCEEEEEE----CC
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeC-----CCccCCCcCeEECCCCCEEEe-CCCCEEEECC-CCCEEEEEc----CC
Confidence 3688999999999999 5999987775 222 36789999999999983 3446888886 455566541 22
Q ss_pred CCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEe----------------------eceeEEEEecCCeEEEEeC
Q psy12788 96 NLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIW----------------------KGKFEMIYVSPSQVLVKPL 152 (254)
Q Consensus 96 ~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~----------------------~~~~~~~~~~~~~~~v~~~ 152 (254)
....+.++.+.|||+++++.+. ++.+..+|. .++.++ ++.+.++...++.+.++|.
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP 153 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence 2346889999999999999887 677766664 232221 1233444445667788887
Q ss_pred CCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCcee
Q psy12788 153 SGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLS 202 (254)
Q Consensus 153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~ 202 (254)
. |+ .+.+-..+.....+.+.+++.++++.. ++.+..+|..+|++.
T Consensus 154 ~-G~----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 154 N-GQ----LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp T-SC----EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred C-CC----EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 6 63 222212234566777888787777665 447889999988753
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.23 E-value=1e-08 Score=95.54 Aligned_cols=216 Identities=12% Similarity=0.130 Sum_probs=129.4
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN 96 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~ 96 (254)
.+++...|++|.++| .+++.+.++.. ...+..++|||||+++.+++.|+ +.+||....... . ...+..
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~--v~~i~~ 238 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDT------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--T--VAEIKI 238 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--E--EEEEEC
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeC------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--E--eEEEec
Confidence 577778899999999 77888877752 23467899999999999888874 889996311111 1 122333
Q ss_pred CCcEeEEEEe----cCCCeEEEeecC-CcEEEEeeeeeeeEee----c------------ee-EEEEe-----------c
Q psy12788 97 LYTISALSWK----RDGSRIACGGLC-GSVELFESVLKRTIWK----G------------KF-EMIYV-----------S 143 (254)
Q Consensus 97 ~~~i~~l~~s----pdG~~la~g~~d-g~v~iwd~~~~~~~~~----~------------~~-~~~~~-----------~ 143 (254)
......++|| |||+++++++.. +.|.++|..+.+.+.. + +. .+..+ .
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 3346789999 799999988864 8999999755433211 0 01 11111 1
Q ss_pred CCeEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccCCceeeE-e-----CCCCCCcee
Q psy12788 144 PSQVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHRNLLSEV-L-----WPDSGRNEK 214 (254)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~~~~~~~-~-----~~~~~g~~~ 214 (254)
.+++.+.|..+.. ...+. -..+.....+.|+++++|+ ++. .++++.++|+.++++... . ++ +...-.
T Consensus 319 ~g~v~~vd~~~~~---~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph-pg~g~~ 394 (567)
T 1qks_A 319 TGKILLVDYTDLN---NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGAN 394 (567)
T ss_dssp TTEEEEEETTCSS---EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC-CTTCEE
T ss_pred CCeEEEEecCCCc---cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC-Ccccee
Confidence 2455555554432 11111 1223456678899988754 554 478999999999986422 2 12 211122
Q ss_pred EEeeCceEEEEEe---CCeeEEEEeec-------CeeeeeeecC
Q psy12788 215 FYFDNVTVCLVFN---AGELSIIEYGN-------NEILTCVRIP 248 (254)
Q Consensus 215 ~~~~~~~~~~~~~---~g~~~~~~~~~-------~~~~~~~~~~ 248 (254)
|.-.+.....+-+ .+.+.++++.. -..+.++.+.
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 3222112222222 25788888765 3466666654
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.22 E-value=2.5e-10 Score=107.09 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=108.6
Q ss_pred CCCCCEEEEecCC--eEEEEeCC----------CcEEEEeCCC------CEEEEeeecCCCCCCCCEEEEEECCCCCEEE
Q psy12788 6 HPVPPYALSWPAG--YILAAGSD----------RIVTIYESDG------RVHRIFDYTAPHYKEREFTVACSSPSGQAVV 67 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D----------~~i~vWd~~g------~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la 67 (254)
|...+..++|+|+ .|+.++.| .+|++||..+ ...+.+. . .+...+..++|||||++||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS---D-DAHRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS---C-SCSSEECCCEECTTSSEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE---e-cCCCcccCceECCCCCEEE
Confidence 5667889999985 68888877 5899999443 3232221 0 1235678899999999999
Q ss_pred EEeCC---------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC--cEEEEeeeeeeeEe---
Q psy12788 68 VGSYD---------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG--SVELFESVLKRTIW--- 133 (254)
Q Consensus 68 ~gs~d---------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg--~v~iwd~~~~~~~~--- 133 (254)
.++.+ .+++||+... +.+.........+...+..++|||||+++++++.++ .|.+||...++...
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~-g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTED-GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTT-SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred EEECCCCCCCCCCcEEEEEEECCC-CcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 87643 2677776521 101010011112346789999999999888888888 45555543332211
Q ss_pred ---------------------eceeEEEEecCCeEEEE--eCCCCCceeeEEEEecCCCceeEE-EEecCcEEEEEEC-C
Q psy12788 134 ---------------------KGKFEMIYVSPSQVLVK--PLSGESKGRGVILKSQYGYEITDV-AIMGNDRYLVART-P 188 (254)
Q Consensus 134 ---------------------~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~~~~~i~~i-~~~~~~~~~v~~~-d 188 (254)
++.+..+... +...+| |+.++ ....+ ..+...+..+ +++++..++++++ +
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~---~~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG---ELVDA-AGPWTEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT---EEEEC-CSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC---cEEEe-cCCCCeEEEEEecCCCEEEEEEcCCC
Confidence 1111222222 344455 54444 22222 2233456777 6665444444444 3
Q ss_pred C--cEEEEeccCCceeeE
Q psy12788 189 D--TLLLGDLHRNLLSEV 204 (254)
Q Consensus 189 ~--~i~i~dl~~~~~~~~ 204 (254)
. .+.++|+.+++...+
T Consensus 358 ~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 358 TAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEEEEETTTCCEEEE
T ss_pred CCCEEEEEECCCCceEEe
Confidence 3 456668888876544
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.21 E-value=1.4e-08 Score=85.78 Aligned_cols=186 Identities=10% Similarity=0.000 Sum_probs=112.7
Q ss_pred ccCCCCCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788 4 VQHPVPPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW 79 (254)
Q Consensus 4 ~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~ 79 (254)
..+...+.+++|++ + .++++..++.|..||..+. .+.+. .+...+.+++++|+|+++++...+ ++.+||.
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~-----~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM-----HPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE-----SSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE-----CCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 34555678999987 3 5778888999999996655 55554 344678999999999988776654 5778875
Q ss_pred cCCCcceeecCceecC--CCCcEeEEEEecCCCeEEE----eec-------------CCcEEEEeeeeeeeEe--e---c
Q psy12788 80 SPSKSVWEEQPNKTIP--NLYTISALSWKRDGSRIAC----GGL-------------CGSVELFESVLKRTIW--K---G 135 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~----g~~-------------dg~v~iwd~~~~~~~~--~---~ 135 (254)
.... .... ..... ....+.+++++|||+++++ |+. .+.|..+|.. ++... . .
T Consensus 98 ~~g~--~~~~-~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~ 173 (296)
T 3e5z_A 98 PGGE--WESI-ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK 173 (296)
T ss_dssp TTCC--EEEE-ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred CCCc--EEEE-eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence 3322 2110 00011 1235678999999999887 431 3455555543 22111 0 0
Q ss_pred eeEEEEe----------cCCeEEEEeCC-CCCc-eeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 136 KFEMIYV----------SPSQVLVKPLS-GESK-GRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 136 ~~~~~~~----------~~~~~~v~~~~-~~~~-~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
...+.+. ..+.+.++++. ++.. .....+ ......+..++++++++++++. ++.|.+||.....+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEE
Confidence 1112222 23456666665 3310 011222 2233456789999988888877 88999999874333
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.20 E-value=6.1e-10 Score=97.18 Aligned_cols=188 Identities=9% Similarity=-0.031 Sum_probs=106.6
Q ss_pred ccccCCCCCEE-----EEecCC--eEEEEeC-CCc--EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe
Q psy12788 2 RVVQHPVPPYA-----LSWPAG--YILAAGS-DRI--VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 70 (254)
Q Consensus 2 ~l~~h~~~v~~-----l~w~~~--~l~s~s~-D~~--i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs 70 (254)
+|..|...+.. .+|+|+ .|+.++. |+. |.+|| ..|+..+.. . ++...+..++|+|||+.|+.++
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt----~-~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT----E-GRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC----C-SSCBCSSSCEECTTSSEEEEEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee----e-CCCCCccceEEcCCCCEEEEEe
Confidence 34555554444 789984 6887777 664 77888 455544322 1 3444445678999999999999
Q ss_pred CCc-EEEEEecCCCcceeecCceecCCCCcEeEEE--EecCCCeEEEe----------------------ecCCcEEEEe
Q psy12788 71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS--WKRDGSRIACG----------------------GLCGSVELFE 125 (254)
Q Consensus 71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~--~spdG~~la~g----------------------~~dg~v~iwd 125 (254)
.++ +++||........ ... .+...+.... ++|||++++.. ..+..|.+||
T Consensus 100 ~~~~l~~~d~~~g~~~~----~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENV----VYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp TTTEEEEEETTTCCEEE----EEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred CCCeEEEEECCCCccee----eee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 874 8888865433211 111 1222333333 49999998843 2346788898
Q ss_pred eeeeeeEe--e-c--eeEEEEec-CCe----------------EEEEeCCCCCceeeEEEEecCC-CceeEEEEecCcEE
Q psy12788 126 SVLKRTIW--K-G--KFEMIYVS-PSQ----------------VLVKPLSGESKGRGVILKSQYG-YEITDVAIMGNDRY 182 (254)
Q Consensus 126 ~~~~~~~~--~-~--~~~~~~~~-~~~----------------~~v~~~~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~~ 182 (254)
+.+++... . . .....+++ +++ +.++++..+ ....+..... ..+....|+|+++.
T Consensus 175 ~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 175 LKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT---NMRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp TTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC---CCEESCCCCTTEEEEEEEECTTSSC
T ss_pred CCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC---ceEEeeeCCCCcccccceECCCCCE
Confidence 76543221 1 1 11233444 333 333343333 1222222111 24778899998874
Q ss_pred E-EEEC--CC---cEEEEeccCCcee
Q psy12788 183 L-VART--PD---TLLLGDLHRNLLS 202 (254)
Q Consensus 183 ~-v~~~--d~---~i~i~dl~~~~~~ 202 (254)
+ ..+. .. .|++||+.+++..
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred EEEEecCCCCCcceEEEEecCCCceE
Confidence 4 3222 22 3999999998743
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.20 E-value=5.7e-09 Score=99.27 Aligned_cols=187 Identities=10% Similarity=0.078 Sum_probs=109.5
Q ss_pred CCCCCEEEEecCC--eEEEEeCCC-----cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c---
Q psy12788 6 HPVPPYALSWPAG--YILAAGSDR-----IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N--- 73 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D~-----~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~--- 73 (254)
|...+..++|+|+ .|+.++.++ +|++|| .+|+.+.... .+ ..+..++|+|||+.|+.++.+ .
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-----~~-~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----ER-VKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----EE-ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-----cC-cccceEEEEeCCCEEEEEEECCcccc
Confidence 4445778999985 566554433 899999 6666554221 11 125679999999999988765 3
Q ss_pred -------------EEEEEecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeec-----CCcEEEEeeee------
Q psy12788 74 -------------IKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGL-----CGSVELFESVL------ 128 (254)
Q Consensus 74 -------------i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~-----dg~v~iwd~~~------ 128 (254)
+++|++......-.. .... .+...+..++|||||++|+.++. +..|.+||+..
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~--v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDIL--CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccCCCCEEEEEECCCCcccceE--EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 666665332211000 1111 12345789999999999998876 56899999865
Q ss_pred e--ee--Eee---ceeE--------EEEec-----CCeEEEEeCCCCCceeeEEEEecCC-CceeEEEEecCcEEEE-EE
Q psy12788 129 K--RT--IWK---GKFE--------MIYVS-----PSQVLVKPLSGESKGRGVILKSQYG-YEITDVAIMGNDRYLV-AR 186 (254)
Q Consensus 129 ~--~~--~~~---~~~~--------~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~~~v-~~ 186 (254)
+ .. +.. ..+. +.+.+ ..++.++++.++.......+..... ..+..+.+++++.+++ ..
T Consensus 275 ~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred CccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 3 11 111 0010 11111 1257778887652101133433333 3678899986566555 44
Q ss_pred CCC--cEEEEeccCCc
Q psy12788 187 TPD--TLLLGDLHRNL 200 (254)
Q Consensus 187 ~d~--~i~i~dl~~~~ 200 (254)
.++ .|.++|+.+|+
T Consensus 355 ~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGA 370 (710)
T ss_dssp ETTEEEEEEEETTTCC
T ss_pred ECCEEEEEEEECCCCC
Confidence 455 46677886665
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.19 E-value=2e-09 Score=102.23 Aligned_cols=184 Identities=12% Similarity=0.059 Sum_probs=106.6
Q ss_pred cCCCCCEEEEecCC--eEE-----EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c--
Q psy12788 5 QHPVPPYALSWPAG--YIL-----AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-- 73 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~-----s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-- 73 (254)
+|...+..++|+|+ +|| +|+.+.+|++|| .+|+.+. . .... . .....++|+|||+.|+.++.| .
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~-~~~~-~--~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-V-DVIE-G--GKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-S-CCBS-C--CTTCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-C-cccC-c--ccccceEEecCCCEEEEEEecCCCC
Confidence 45557889999985 566 455567899999 5665430 0 0111 1 112678999999999998875 2
Q ss_pred -----------EEEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeeeee--Eee-
Q psy12788 74 -----------IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLKRT--IWK- 134 (254)
Q Consensus 74 -----------i~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~~~--~~~- 134 (254)
+++|++......-.. ... ..+...+.+++|||||++|+.++.++ .|.++|...++. +..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~l--v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTV--VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEE--EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred CccccCCCCCEEEEEECCCCchhceE--EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 677775432211000 111 12234688999999999999988776 666666432211 110
Q ss_pred --ceeE-------EEEec-----CCeEEEEeCCCCCceeeEEEEecC-CCceeEEEEecCcEE-EEEECCCcEEEEec
Q psy12788 135 --GKFE-------MIYVS-----PSQVLVKPLSGESKGRGVILKSQY-GYEITDVAIMGNDRY-LVARTPDTLLLGDL 196 (254)
Q Consensus 135 --~~~~-------~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~-~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl 196 (254)
..+. +.+.+ ..++.++++.++.......+.... +..+..++++ ++.+ ++...++..+||.+
T Consensus 271 ~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 271 VGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp SSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 0111 11212 346777887665210013333333 4468888988 4554 44566777777643
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.17 E-value=3.4e-09 Score=92.40 Aligned_cols=186 Identities=6% Similarity=-0.042 Sum_probs=107.4
Q ss_pred CCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEE--EECCCCCEEEEEe----------
Q psy12788 6 HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVA--CSSPSGQAVVVGS---------- 70 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~--a~sPdg~~la~gs---------- 70 (254)
|...+..++|+|+ .|+.++.|+.+++|| .+|+....+. .+...+... .++|||++++...
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-----VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-----chhhcccccceeECCCCCeeccccccCccccccc
Confidence 3344456789984 699999999999999 6676554443 233334333 3599999987421
Q ss_pred ------------CC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecC------CcEEEEeeeeee
Q psy12788 71 ------------YD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLC------GSVELFESVLKR 130 (254)
Q Consensus 71 ------------~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~d------g~v~iwd~~~~~ 130 (254)
.+ .+.+||... +... ....+...+..++||| ||++||....+ ..|.++|...+.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~--g~~~----~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKT--GEST----VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTT--CCEE----EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccchhhhhhccCCcceEEEEECCC--CceE----EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 22 255666433 2211 1123345689999999 99999988764 367777753322
Q ss_pred e--Eeec-----eeEEEEecCC---------------eEEEEeCCCCCceeeEEEEecCCC-----ceeEEEEecCcEEE
Q psy12788 131 T--IWKG-----KFEMIYVSPS---------------QVLVKPLSGESKGRGVILKSQYGY-----EITDVAIMGNDRYL 183 (254)
Q Consensus 131 ~--~~~~-----~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~~~~-----~i~~i~~~~~~~~~ 183 (254)
. +... .....+++++ ++.++|+.++. ...+....+. ....+.|+|+++++
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~~~~~~~spdg~~l 304 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE---NRQLTSMPACSHLMSNYDGSLMVGDGSDA 304 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC---EEEEEEECCEEEEEECTTSSEEEEEECCC
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc---eEEEEcCCCceeeeecCCCCeEccCCCcc
Confidence 1 1110 1112232222 27778887773 3333222220 02234688888755
Q ss_pred EE----------ECCCcEEEEeccCCceeeEe
Q psy12788 184 VA----------RTPDTLLLGDLHRNLLSEVL 205 (254)
Q Consensus 184 v~----------~~d~~i~i~dl~~~~~~~~~ 205 (254)
+. ..+..|++||+.++++..+.
T Consensus 305 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 305 PVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp ------------CCCCEEEEEETTTTEEEEEE
T ss_pred eeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 43 33558999999998765443
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.15 E-value=1.7e-08 Score=87.02 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=117.9
Q ss_pred CCCCEEEEecCC--eEEEEeCCCcEEEEeCCCC--EEEEeeecC-----CCCCCCCEEEEEECC-CCCEEEEEe-CC-cE
Q psy12788 7 PVPPYALSWPAG--YILAAGSDRIVTIYESDGR--VHRIFDYTA-----PHYKEREFTVACSSP-SGQAVVVGS-YD-NI 74 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~--~~~~~~~~~-----~~~~~~~v~~~a~sP-dg~~la~gs-~d-~i 74 (254)
-..|..++++++ .+++.+.+++|++||.+|+ .+..+.... . ++......++|+| +|+++++.+ .+ +|
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~-~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ-NHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST-TCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc-cccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 356889999873 6777777899999997776 555542100 1 2334689999999 899888876 35 58
Q ss_pred EEEEecCCCcceeecCcee------cCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEee--------ceeEE
Q psy12788 75 KLFAWSPSKSVWEEQPNKT------IPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWK--------GKFEM 139 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~------~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~--------~~~~~ 139 (254)
++|+.+ ........... ..+......|+++|+ |+++++...++.|++||..+++.+.. ..+.+
T Consensus 169 ~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 169 VQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 888732 22111100000 011234889999999 78888888899999999865544321 12222
Q ss_pred EEec----------------CCeEEEEeCCCCCceeeEEEE---ecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccC
Q psy12788 140 IYVS----------------PSQVLVKPLSGESKGRGVILK---SQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHR 198 (254)
Q Consensus 140 ~~~~----------------~~~~~v~~~~~~~~~~~~~l~---s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~ 198 (254)
.+.+ ...+.+++..++. .+... .........|++++++.++++. .+++|.+|++..
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2222 2267788887773 22221 1223458899999988766654 477999998754
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.07 E-value=4.8e-08 Score=82.42 Aligned_cols=186 Identities=11% Similarity=0.010 Sum_probs=109.7
Q ss_pred cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE----EeC------
Q psy12788 5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV----GSY------ 71 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~----gs~------ 71 (254)
.+...|.+++++++ ++++...++.|.+|| .+|+.......... .....++.++++|+|+++++ |+.
T Consensus 66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 45667899999874 455555568999999 47875433211111 11234678999999999887 331
Q ss_pred ------CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee-eeee-----Eee----c
Q psy12788 72 ------DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV-LKRT-----IWK----G 135 (254)
Q Consensus 72 ------d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~-~~~~-----~~~----~ 135 (254)
..-+||.++.. +... ....+......++|+|||++|++.+.++.|.+||.. .++. ... .
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 219 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPD-GTLS----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK 219 (296)
T ss_dssp CCCCCSSSCEEEEECTT-SCEE----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred cccccCCCcEEEEECCC-CCEE----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence 12257777654 2211 112344567899999999999777788999999975 2222 110 0
Q ss_pred eeEEEEec--------CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEe-cCcEEEEEECCCcEEEEeccCCce
Q psy12788 136 KFEMIYVS--------PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM-GNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 136 ~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~-~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
...+.+.. .+.+.+++.. + ..+........ +.+++|. ++++.+..++.+.+.-.++.++++
T Consensus 220 p~~i~~d~~G~l~v~~~~~v~~~~~~-g---~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASAGDGVHVLTPD-G---DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp CCSEEEBTTSCEEEEETTEEEEECTT-S---CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred CCeEEECCCCCEEEEcCCeEEEECCC-C---CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 00111111 4566677765 3 22222222333 8889995 555555444455666667777665
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.07 E-value=1.5e-08 Score=88.87 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=97.3
Q ss_pred CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------C-cEEEEEecCCCcceeecCce
Q psy12788 25 SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------D-NIKLFAWSPSKSVWEEQPNK 92 (254)
Q Consensus 25 ~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d-~i~l~d~~~~~~~~~~~~~~ 92 (254)
.|++|.+|| .+++.+.++. .+..+ .++|+|||+++.+++. + .+.+||....+.... .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~-----~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~----i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP-----TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE----I 97 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE-----CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE----E
T ss_pred ccCeEEEEECCCCeEEEEec-----CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE----E
Confidence 478999999 7888887665 23233 8999999999888752 3 488998543222111 1
Q ss_pred ecC-----CCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEee-----c-----------eeEEEEecCCeEEE
Q psy12788 93 TIP-----NLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWK-----G-----------KFEMIYVSPSQVLV 149 (254)
Q Consensus 93 ~~~-----~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~-----~-----------~~~~~~~~~~~~~v 149 (254)
... +......++|||||++|++++. ++.|.+||+.+++.... + ...++...++++.+
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 111 1124567999999999999885 57899999876654433 1 12244556667777
Q ss_pred EeCCCCCceeeE-EEEe----cCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCc
Q psy12788 150 KPLSGESKGRGV-ILKS----QYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 150 ~~~~~~~~~~~~-~l~s----~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~ 200 (254)
+++...+ ... ...+ ..+..-..+.+++++ .++..+.++.+.++|+..++
T Consensus 178 v~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 178 INLGEDG--KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEECTTS--SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEECCCC--cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 7765432 111 1110 001111112223333 44445567788899987654
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.04 E-value=2e-07 Score=79.68 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=112.9
Q ss_pred cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----cE
Q psy12788 3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----NI 74 (254)
Q Consensus 3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----~i 74 (254)
+..+...+.+++|+++ .++++..++.|.+|| .+++....+. .+...+.+++|+|+|+++++...+ ++
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----CSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-----CCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 3456667889999874 455778889999999 4555443221 244679999999999988877655 46
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec------CCcEEEEeeeeeeeEe--e---ceeEEEEe-
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL------CGSVELFESVLKRTIW--K---GKFEMIYV- 142 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~------dg~v~iwd~~~~~~~~--~---~~~~~~~~- 142 (254)
.+||..... .... .........+.+++++|||+++++... .+.|..+|...++... . ....+.+.
T Consensus 115 ~~~d~~~~~--~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 115 FAATENGDN--LQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST 191 (333)
T ss_dssp EEECTTSCS--CEEE-ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred EEEeCCCCE--EEEE-EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECC
Confidence 677643322 1100 000112346899999999998876653 2456566543322111 0 11112222
Q ss_pred ----------cCCeEEEEeCCC-CCceee---EEEEecCC-CceeEEEEecCcEEEEEE-CCCcEEEEeccCCceeeE
Q psy12788 143 ----------SPSQVLVKPLSG-ESKGRG---VILKSQYG-YEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 143 ----------~~~~~~v~~~~~-~~~~~~---~~l~s~~~-~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~~ 204 (254)
..+.+.++++.+ +..... .......+ ..+..+++++++.++++. .++.|.+||.....+..+
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEE
Confidence 234566777753 210000 01111112 367789999888776665 467899999854444333
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.03 E-value=1.6e-07 Score=80.48 Aligned_cols=173 Identities=8% Similarity=0.037 Sum_probs=96.5
Q ss_pred CCEEEEecCC--eEEEEeCC---C--cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--------
Q psy12788 9 PPYALSWPAG--YILAAGSD---R--IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-------- 72 (254)
Q Consensus 9 ~v~~l~w~~~--~l~s~s~D---~--~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-------- 72 (254)
.+..++|+|+ .|+.++.+ + .|.+|| ..|+..+... +.. +..++|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 4678999985 67776654 2 377778 4454443222 223 8999999999999887632
Q ss_pred --------------------cEEEEEecCCCcce-eecCceecCCCCcEeEEEEecCCCeEEEeecCC-------cEEEE
Q psy12788 73 --------------------NIKLFAWSPSKSVW-EEQPNKTIPNLYTISALSWKRDGSRIACGGLCG-------SVELF 124 (254)
Q Consensus 73 --------------------~i~l~d~~~~~~~~-~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg-------~v~iw 124 (254)
.+.+|+.. .+.. .. .. . . .+..++||||| ++++++.++ ...||
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~--~~~~~~~--l~-~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTE--SEEVIEE--FE-K--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp ----CCCC---------CEEEEEEEETT--TTEEEEE--EE-E--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred EEcccceeecCcccccCccceEEEEECC--CCeEEee--ec-C--C-CcccccCCCCe-EEEEEecccccccccccccEE
Confidence 24555543 3222 11 11 1 2 67889999999 777776542 34555
Q ss_pred eeeeeee--EeeceeEEEEecCC------------------eEEEEeCCCCCceeeEEEEecCCCceeE-EEEecCcEEE
Q psy12788 125 ESVLKRT--IWKGKFEMIYVSPS------------------QVLVKPLSGESKGRGVILKSQYGYEITD-VAIMGNDRYL 183 (254)
Q Consensus 125 d~~~~~~--~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~~~~~i~~-i~~~~~~~~~ 183 (254)
.+..++. +.........++++ ++.++| ++ ....+...+...+.. +.|+ ++.++
T Consensus 204 ~~d~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg~~~ 277 (347)
T 2gop_A 204 IWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GKVYF 277 (347)
T ss_dssp EEETTEEEEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TEEEE
T ss_pred EeCCCceEEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-CcEEE
Confidence 4323221 11110000112222 344444 22 222222223446776 8888 77555
Q ss_pred EEECCCcEEEEeccCCceeeE
Q psy12788 184 VARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 184 v~~~d~~i~i~dl~~~~~~~~ 204 (254)
++..++...|| +.+++...+
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEE
T ss_pred EEecCCcEEEE-EcCCceEEE
Confidence 66778899999 876665333
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.02 E-value=1.9e-07 Score=77.09 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=120.7
Q ss_pred CCEEEEecCC--eEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc
Q psy12788 9 PPYALSWPAG--YIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV 85 (254)
Q Consensus 9 ~v~~l~w~~~--~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~ 85 (254)
.|.+++++++ .++ +.+.++.|.+||..+.....+. . .+...+.+++++|+|+++++...+++.+||... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~--~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---F-NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS--NN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC---C-CSCCSCCCEEECTTCCEEEEETTTEEEEECTTC--SC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe---e-CCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC--ce
Confidence 7889999874 344 3367889999995443332221 1 233457889999999977766523577777432 21
Q ss_pred eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------eceeEEEEec----------CCeEEE
Q psy12788 86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------KGKFEMIYVS----------PSQVLV 149 (254)
Q Consensus 86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~~~~----------~~~~~v 149 (254)
... ........+..++++|+|+++++...++.|.+||....+... .....+.+.. .+.+.+
T Consensus 99 ~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 99 QTV---LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp CEE---CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred Eee---eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 111 111223568999999999988887788999999854322111 0111222222 235555
Q ss_pred EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788 150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA 228 (254)
Q Consensus 150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 228 (254)
++..... ...........+..|++++++.++++.. ++.|.++|..+........ .+ + ....++++++
T Consensus 176 ~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~-----~-~~p~~i~~~~ 243 (270)
T 1rwi_B 176 LEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF---TG-----L-NTPLAVAVDS 243 (270)
T ss_dssp ECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC---CS-----C-SCEEEEEECT
T ss_pred EecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc---CC-----C-CCceeEEECC
Confidence 6655441 1111111114578899998877666654 6789999987665432211 11 0 1235666765
Q ss_pred -CeeEEEEeecCee
Q psy12788 229 -GELSIIEYGNNEI 241 (254)
Q Consensus 229 -g~~~~~~~~~~~~ 241 (254)
|.+-+.+.+++.+
T Consensus 244 ~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 244 DRTVYVADRGNDRV 257 (270)
T ss_dssp TCCEEEEEGGGTEE
T ss_pred CCCEEEEECCCCEE
Confidence 6665566655544
No 183
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.98 E-value=1.4e-07 Score=90.11 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=102.8
Q ss_pred CCCEEEEecCC--eEEEEeCC-----CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc------
Q psy12788 8 VPPYALSWPAG--YILAAGSD-----RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN------ 73 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D-----~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~------ 73 (254)
..+..++|+|+ +|+.++.+ .+|++|| .+|+.+.... +...+..++|+|| +.|+.++.+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 35678899985 56665543 4699999 6676653211 1112357899999 9999887652
Q ss_pred ---------EEEEEecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeecCC-----cEEEEeeeee--e-e--Ee
Q psy12788 74 ---------IKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCG-----SVELFESVLK--R-T--IW 133 (254)
Q Consensus 74 ---------i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg-----~v~iwd~~~~--~-~--~~ 133 (254)
+++|++. ...-+....... .+...+..+.|||||++|+..+.++ .|.+||+..+ + . +.
T Consensus 236 ~~~~~~~~~v~~~~lg--t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLG--TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp ---CCCCCEEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred cccCCCCCEEEEEECC--CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 4455532 221100001111 1223588999999999999888655 7999998543 2 1 11
Q ss_pred e---ceeE--------EEEec-----CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEE--
Q psy12788 134 K---GKFE--------MIYVS-----PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLG-- 194 (254)
Q Consensus 134 ~---~~~~--------~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~-- 194 (254)
. ..+. +.+.+ ..++.++++.++. .....+.......+..+.++. +.+ ++...++...||
T Consensus 314 ~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~~-~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 314 PDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIAG-NRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEEB-TEEEEEEEETTEEEEEEE
T ss_pred CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEE
Confidence 1 1111 11111 2347777876631 023334444444577788884 444 445567766665
Q ss_pred eccCCce
Q psy12788 195 DLHRNLL 201 (254)
Q Consensus 195 dl~~~~~ 201 (254)
|+..+..
T Consensus 392 ~~~g~~~ 398 (741)
T 1yr2_A 392 DLDGKPA 398 (741)
T ss_dssp ETTSCEE
T ss_pred eCCCCce
Confidence 5444333
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.98 E-value=5.5e-07 Score=77.62 Aligned_cols=179 Identities=8% Similarity=-0.029 Sum_probs=108.0
Q ss_pred CCEEEEecCCe-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcc
Q psy12788 9 PPYALSWPAGY-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSV 85 (254)
Q Consensus 9 ~v~~l~w~~~~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~ 85 (254)
.+..++++++. .++...+++|.+|| .+++.+.++. . ......++++|+|+++++...+ .+.++|....+..
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-----~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-----G-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-----C-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-----C-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 45677777764 45555678999999 7888887774 1 2457899999999766665455 5888885432211
Q ss_pred eeecCceecCC----CCcEeEEEEecCCCeEEEee--cCCcEEEEeeeeeeeEee---------------ceeEEEEecC
Q psy12788 86 WEEQPNKTIPN----LYTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWK---------------GKFEMIYVSP 144 (254)
Q Consensus 86 ~~~~~~~~~~~----~~~i~~l~~spdG~~la~g~--~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~ 144 (254)
.. ..... ......+++ ++..|.+++ .++.|.++|..+++.... +++.+.....
T Consensus 119 ~~----i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 119 GY----IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EE----EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred EE----EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCC
Confidence 11 11111 114556777 444555554 489999999865543221 1111111122
Q ss_pred ----------CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788 145 ----------SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 145 ----------~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
+.+.++|..++. ....+....+.....++++|+++++-.... ++.++|+.++++.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVP 257 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCC
T ss_pred ccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCcee
Confidence 467777877662 111222222456889999987765433333 8999999988753
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.91 E-value=4.5e-08 Score=85.09 Aligned_cols=176 Identities=6% Similarity=-0.079 Sum_probs=102.3
Q ss_pred EEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEE-------------------EEECCCCCEEEEE
Q psy12788 12 ALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTV-------------------ACSSPSGQAVVVG 69 (254)
Q Consensus 12 ~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~-------------------~a~sPdg~~la~g 69 (254)
.+.|+|+ .|+.++.++.|++|| ..|+....+. .+...... ++|+|+|+.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~ 159 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-----VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFA 159 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-----cccccCCCCCEEEeccCCccccccccccccCCCCcceeee
Confidence 3778884 688889998999999 5565543332 12222222 4578888877664
Q ss_pred e-----CC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecC------CcEEEEeeeeeee--Eee
Q psy12788 70 S-----YD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLC------GSVELFESVLKRT--IWK 134 (254)
Q Consensus 70 s-----~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~d------g~v~iwd~~~~~~--~~~ 134 (254)
. .+ .+.+||... +.... ...+...+..+.|+| ||++|+..+.+ ..|.+||...++. +..
T Consensus 160 ~~~~~~~~~~l~~~d~~~--g~~~~----~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIET--GELEV----IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp HHHHTCCCEEEEEEETTT--CCEEE----EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred eeccCCCcceEEEEECCC--CcEEe----eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence 3 23 366666443 22111 123345688999999 89988877654 3577787643321 111
Q ss_pred -----ceeEEEEecC---------------CeEEEEeCCCCCceeeEEEEecCCCceeEEEEec-CcEEEEEE-------
Q psy12788 135 -----GKFEMIYVSP---------------SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-NDRYLVAR------- 186 (254)
Q Consensus 135 -----~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~~------- 186 (254)
....+.++++ ..+.++|+.++. ...+....+ .. +.|++ ++++++..
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECCS--EE-EEEECSSSSEEEEEECCC---
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCCC--CC-CCccCCCCceEEEecCCccee
Confidence 0111222222 227777887763 333332222 23 88898 88766542
Q ss_pred ----------CCCcEEEEeccCCceeeE
Q psy12788 187 ----------TPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 187 ----------~d~~i~i~dl~~~~~~~~ 204 (254)
.+..+.+||+.+++...+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCCEE
T ss_pred eccccccccCCCCcEEEEecccCceEEc
Confidence 236899999998875433
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.90 E-value=4.4e-08 Score=87.05 Aligned_cols=105 Identities=9% Similarity=0.012 Sum_probs=75.8
Q ss_pred ccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788 4 VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP 81 (254)
Q Consensus 4 ~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~ 81 (254)
..++. |++|+|+.+.|+++ .++.|++|| .+-.....+. .+...+.++.+.+.. +|+++.|+ +.+||+..
T Consensus 85 ~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~-----~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 85 KEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVT-----SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT 155 (388)
T ss_dssp EECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEE-----ECSSCEEEEEECSSE--EEEEETTSEEEEEETTT
T ss_pred eeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccc-----eeecceeeEEecCCC--EEEEECCCCEEEEEccC
Confidence 45677 99999955677777 889999999 4433333332 344568888776643 88888886 88999653
Q ss_pred CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788 82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 128 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~ 128 (254)
... . .....|++++|||+| ++.|..||++++|+...
T Consensus 156 ~~~--~-------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 156 KST--K-------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp CCE--E-------EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred Ccc--c-------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence 221 1 123479999999999 78899999999997643
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.90 E-value=1.4e-06 Score=76.24 Aligned_cols=181 Identities=7% Similarity=-0.024 Sum_probs=104.0
Q ss_pred EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeecCCC-CCCCCEEEEEECCCCCEEEEEeC--C-cE
Q psy12788 12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYTAPH-YKEREFTVACSSPSGQAVVVGSY--D-NI 74 (254)
Q Consensus 12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~~~~-~~~~~v~~~a~sPdg~~la~gs~--d-~i 74 (254)
.++++|+ +|++++ .|++|.+|| .+++.++++...... .+......++|+|||++|.+++. + .+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8899985 577765 367899999 678888777532100 01234567899999999988763 3 48
Q ss_pred EEEEecCCCcceeecCcee-cCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeee-eeeE-------------------
Q psy12788 75 KLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDG-SRIACGGLCGSVELFESVL-KRTI------------------- 132 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~-~~~~------------------- 132 (254)
.+||....+. ... ++.. ....+.+.|+| ..+++.+.||.+.+|+... ++..
T Consensus 134 ~v~d~~~~~~------~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 134 GIVDVAKGDY------VEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp EEEETTTTEE------EEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred EEEECCCCcE------EEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence 8999654321 112 2221 12235567766 5666777778877777532 2211
Q ss_pred --eeceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cC-------C---CceeEEEEecCc-EEEEEEC----------
Q psy12788 133 --WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QY-------G---YEITDVAIMGND-RYLVART---------- 187 (254)
Q Consensus 133 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~-------~---~~i~~i~~~~~~-~~~v~~~---------- 187 (254)
..+........++++.++|+..+. ...+.. .. + ....-++|++++ +.+++..
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~ 283 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDE---VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF 283 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSS---CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCC---ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence 001111222234578888887552 111211 00 0 011237888874 4444432
Q ss_pred -CCcEEEEeccCCcee
Q psy12788 188 -PDTLLLGDLHRNLLS 202 (254)
Q Consensus 188 -d~~i~i~dl~~~~~~ 202 (254)
+.++.+||+.++++.
T Consensus 284 ~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 284 PAAEIWVMDTKTKQRV 299 (361)
T ss_dssp CCSEEEEEETTTTEEE
T ss_pred CCceEEEEECCCCcEE
Confidence 348999999998754
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.90 E-value=3e-06 Score=71.28 Aligned_cols=190 Identities=7% Similarity=-0.012 Sum_probs=107.8
Q ss_pred CCCCCEEEEecCC--eEEE-------EeCCCcEEEEe-CCCCEEEEeeec-CCCCCCCCEEEEEECCC-CCEEEEEeCCc
Q psy12788 6 HPVPPYALSWPAG--YILA-------AGSDRIVTIYE-SDGRVHRIFDYT-APHYKEREFTVACSSPS-GQAVVVGSYDN 73 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s-------~s~D~~i~vWd-~~g~~~~~~~~~-~~~~~~~~v~~~a~sPd-g~~la~gs~d~ 73 (254)
.-..+.+++|+++ .+++ +..++.|.+|| .+|+.. .+... .. ++...+.+++++|+ |+++++...++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~-~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVN-GYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEET-TEECCEEEEEECSSSSEEEEEETTTE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccC-CCCCCCceEEEecCCCcEEEEECCCC
Confidence 3456789999864 3445 46788999999 667653 33210 01 23456899999999 87776655557
Q ss_pred EEEEEecCCCcceeec-CceecC-CCCcEeEEEEecCCCeEEEeecC---------------CcEEEEeeeeeeeEe---
Q psy12788 74 IKLFAWSPSKSVWEEQ-PNKTIP-NLYTISALSWKRDGSRIACGGLC---------------GSVELFESVLKRTIW--- 133 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~-~~~~~~-~~~~i~~l~~spdG~~la~g~~d---------------g~v~iwd~~~~~~~~--- 133 (254)
+.+||.+ .. .... ...... ....+.+++++|+|+++++...+ +.|..+|.. ++...
T Consensus 94 l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEEeCC-CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 7778754 22 2110 000000 12358899999999988877655 567667643 22110
Q ss_pred --eceeEEEEe----c-----------CCeEEEEeCC-CCCceeeEEEEecCC---CceeEEEEecCcEEEEEE-CCCcE
Q psy12788 134 --KGKFEMIYV----S-----------PSQVLVKPLS-GESKGRGVILKSQYG---YEITDVAIMGNDRYLVAR-TPDTL 191 (254)
Q Consensus 134 --~~~~~~~~~----~-----------~~~~~v~~~~-~~~~~~~~~l~s~~~---~~i~~i~~~~~~~~~v~~-~d~~i 191 (254)
.....+.+. . .+.+.+++.. ++.......+....+ ..+..+++++++.++++. .++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 011112222 2 2345555554 221000011111111 347788999888766654 67899
Q ss_pred EEEeccCCce
Q psy12788 192 LLGDLHRNLL 201 (254)
Q Consensus 192 ~i~dl~~~~~ 201 (254)
.+||..+++.
T Consensus 250 ~~~d~~~g~~ 259 (314)
T 1pjx_A 250 EVFGPDGGQP 259 (314)
T ss_dssp EEECTTCBSC
T ss_pred EEEcCCCCcE
Confidence 9999886654
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.88 E-value=4.3e-08 Score=83.82 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=99.6
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS 84 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~ 84 (254)
..+.+++|+++ .++..+.++.++.| .++....+. .+...+.+++|+|+|++++++..++ +.+||... .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~ 76 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEIS-----KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET--K 76 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEE-----SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT--C
T ss_pred cccceeeecCCccceeEEeecccCccc--ccceeEEEe-----ccCccccCcEECCCCCEEEEECCCCEEEEEeCCC--C
Confidence 45677888874 45666778899999 444554443 3445679999999999888877664 77777432 2
Q ss_pred ceeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788 85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG 160 (254)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (254)
.... ........+.+++|+|||+++++...+ +.|.+||...++..
T Consensus 77 ~~~~---~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---------------------------- 125 (333)
T 2dg1_A 77 EIKR---PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---------------------------- 125 (333)
T ss_dssp CEEE---EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE----------------------------
T ss_pred cEEE---EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE----------------------------
Confidence 2211 111234579999999999988877666 57888875433211
Q ss_pred EEEE-ecCCCceeEEEEecCcEEEEEECC-------CcEEEEeccCCce
Q psy12788 161 VILK-SQYGYEITDVAIMGNDRYLVARTP-------DTLLLGDLHRNLL 201 (254)
Q Consensus 161 ~~l~-s~~~~~i~~i~~~~~~~~~v~~~d-------~~i~i~dl~~~~~ 201 (254)
..+. ...+..+..+.++++++++++... ..+..+|..++++
T Consensus 126 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~ 174 (333)
T 2dg1_A 126 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV 174 (333)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE
Confidence 0010 012346788899988877776553 4566667666543
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.87 E-value=6.6e-06 Score=68.38 Aligned_cols=184 Identities=9% Similarity=0.018 Sum_probs=112.8
Q ss_pred cCCCCCEEEEecCC-e-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecC
Q psy12788 5 QHPVPPYALSWPAG-Y-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSP 81 (254)
Q Consensus 5 ~h~~~v~~l~w~~~-~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~ 81 (254)
.+...|.+++++++ . .++...++.|.+||.+++.. .+.. . .+...+.+++++|+|.++++...+ ++..|+..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~-~~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKIT-EYPL--P-TPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEC--S-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeE-EecC--C-cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 34567899999874 3 44444478899999556533 3321 1 234578999999999988776645 46677632
Q ss_pred CCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------eceeEEEEec----------
Q psy12788 82 SKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------KGKFEMIYVS---------- 143 (254)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~---------- 143 (254)
. .... ...+ ....+..+++.|+|+++++...++.|..||. .++... .....+.+..
T Consensus 87 -g-~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 87 -G-IIKE---YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -S-CEEE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -C-cEEE---EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 2 1211 1112 3346899999999998888777889999986 332211 0112222222
Q ss_pred CCeEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeE
Q psy12788 144 PSQVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~ 204 (254)
.+.+..++. ++. ...+. ......+..+++.+++.++++.. ++.+.++|. ++++..+
T Consensus 161 ~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 161 NNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF 218 (299)
T ss_dssp TTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE
Confidence 235555565 432 22121 11234578899998877776664 678999998 7765443
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.86 E-value=2.1e-07 Score=76.90 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=106.5
Q ss_pred CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcc
Q psy12788 8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSV 85 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~ 85 (254)
..+.+++++++ .|..+..++.|.+||.++.....+.. .....+..++++|+|+++++...+ ++.+|+. ....
T Consensus 67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~--~~~~ 140 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA--GSKT 140 (270)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECT--TCCS
T ss_pred CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECCCCEEEEEEC--CCce
Confidence 46788999874 34444448899999976655433321 222568999999999987776554 4767652 2221
Q ss_pred eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------eceeEEEEecC----------CeEEE
Q psy12788 86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------KGKFEMIYVSP----------SQVLV 149 (254)
Q Consensus 86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~----------~~~~v 149 (254)
... ........+..++++|+|+++++...++.|.+||...+.... .....+.+..+ +.+.+
T Consensus 141 ~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 141 QTV---LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp CEE---CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred eEe---eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 110 011122357889999999988877778999999975432211 11222333233 34445
Q ss_pred EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCc
Q psy12788 150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNL 200 (254)
Q Consensus 150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~ 200 (254)
++.... ....+.......+..++++++++++++. .+++|.++++...+
T Consensus 218 ~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 218 LLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCS---CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EcCCCC---cceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 554332 1111111111357788888877655544 47788888876654
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.84 E-value=7.1e-07 Score=75.36 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=81.0
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCC-Cc
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPS-KS 84 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~-~~ 84 (254)
..+.++++.|+ .|+ +.++.|+.||.+|+.+..+.. +....+.++.+.|||+++++.+.+.-+++.++.. +.
T Consensus 37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~ 110 (276)
T 3no2_A 37 WECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAA----PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEV 110 (276)
T ss_dssp CCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCE
T ss_pred CCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcC----CCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCE
Confidence 35778888874 455 457889999999999987752 2234688999999999999887633344444432 23
Q ss_pred ceeecCceec-CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe
Q psy12788 85 VWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW 133 (254)
Q Consensus 85 ~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~ 133 (254)
.|+....... .+......++..+||+++++...++.|..||.. ++.++
T Consensus 111 l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 111 LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 3332100000 111245567889999999999999999999987 66554
No 193
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.84 E-value=2.8e-07 Score=81.86 Aligned_cols=137 Identities=9% Similarity=-0.042 Sum_probs=96.9
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEecCCCccee-----ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788 53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWE-----EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 127 (254)
Q Consensus 53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~-----~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~ 127 (254)
.++.++++|...++++|+.+++++|+...-..... .......+... |+.|+| ||++|+++ .++.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 58999999999999999999988998532110000 01112233445 999999 99999999 89999999974
Q ss_pred eee---eEe-----------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEE
Q psy12788 128 LKR---TIW-----------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLL 193 (254)
Q Consensus 128 ~~~---~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i 193 (254)
... .+. -..-.+....++.+.+|++..+. ...+ ...|.+++++|++ ++++..|+++++
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~---~~~~----~~~Vs~v~WSpkG-~~vg~~dg~i~~ 186 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS---TKQL----AQNVTSFDVTNSQ-LAVLLKDRSFQS 186 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---EEEE----EESEEEEEECSSE-EEEEETTSCEEE
T ss_pred hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc---cccc----cCCceEEEEcCCc-eEEEEcCCcEEE
Confidence 211 110 00112334578899999998773 2322 3479999999988 778999999999
Q ss_pred EeccCCce
Q psy12788 194 GDLHRNLL 201 (254)
Q Consensus 194 ~dl~~~~~ 201 (254)
|+...+.+
T Consensus 187 ~~~~~~~~ 194 (388)
T 1xip_A 187 FAWRNGEM 194 (388)
T ss_dssp EEEETTEE
T ss_pred EcCCCccc
Confidence 98887664
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.83 E-value=4.8e-06 Score=77.51 Aligned_cols=185 Identities=10% Similarity=0.037 Sum_probs=110.1
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEeC---CCCEEEEeeecCCCCCCCCEEEEEEC----CCCCEEEEEeCC--cEEE
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYES---DGRVHRIFDYTAPHYKEREFTVACSS----PSGQAVVVGSYD--NIKL 76 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~---~g~~~~~~~~~~~~~~~~~v~~~a~s----Pdg~~la~gs~d--~i~l 76 (254)
..+..++++|+ ++++++.|+.|.+||. +++.+.++.. + .....++|| |||+++.+++.. .+.+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V 270 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVI 270 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----C--CCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence 35678899884 7888899999999994 6777766641 1 246789999 799998887754 4778
Q ss_pred EEecCCCcceeec-Cce-------------------------------------------------ecCCCCcEeEEEEe
Q psy12788 77 FAWSPSKSVWEEQ-PNK-------------------------------------------------TIPNLYTISALSWK 106 (254)
Q Consensus 77 ~d~~~~~~~~~~~-~~~-------------------------------------------------~~~~~~~i~~l~~s 106 (254)
+|..+.+...... ... .++.......+.|+
T Consensus 271 iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~ 350 (567)
T 1qks_A 271 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 350 (567)
T ss_dssp EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC
Confidence 8843322111000 000 00001123357899
Q ss_pred cCCCeEEEee-cCCcEEEEeeeeeeeEe---e---------c-ee--------EEEE-ecCCeEEEEeCCCCCc-----e
Q psy12788 107 RDGSRIACGG-LCGSVELFESVLKRTIW---K---------G-KF--------EMIY-VSPSQVLVKPLSGESK-----G 158 (254)
Q Consensus 107 pdG~~la~g~-~dg~v~iwd~~~~~~~~---~---------~-~~--------~~~~-~~~~~~~v~~~~~~~~-----~ 158 (254)
|||+++++++ .++.|.++|+.+++... - + .| -.+. .+++.+.+.|..+++. .
T Consensus 351 pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 351 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 9999987766 57899999986554321 0 0 01 0111 2345777777766310 0
Q ss_pred eeEEEEecCCCceeEEEEecCcEEEEEEC--------CCcEEEEeccCC
Q psy12788 159 RGVILKSQYGYEITDVAIMGNDRYLVART--------PDTLLLGDLHRN 199 (254)
Q Consensus 159 ~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--------d~~i~i~dl~~~ 199 (254)
....+.. .+..-.-|..+|+++++-... .++|.++|+.+.
T Consensus 431 vv~~i~~-~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 431 ILDSFPA-LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEC-SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEEEec-CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 1111111 122224466788876554433 359999998876
No 195
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.81 E-value=2.4e-06 Score=72.34 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=98.2
Q ss_pred CCCCCEEEEecCC-eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------Cc
Q psy12788 6 HPVPPYALSWPAG-YILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------DN 73 (254)
Q Consensus 6 h~~~v~~l~w~~~-~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d~ 73 (254)
+...|.+++++++ .|+.+. ++.|.+||. +|+. ..+...........++.++++|+|+++++... ..
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 4567889999874 455554 567999994 4543 33321111011235789999999997765422 12
Q ss_pred EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEE-EeecCCcEEEEee--eeeeeEeeceeEEEEecCCeEEEE
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGSVELFES--VLKRTIWKGKFEMIYVSPSQVLVK 150 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la-~g~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~v~ 150 (254)
-+||.++..... . ....+....+.++|+|||+.|. +.+.++.|..||. ..++..... .+.
T Consensus 130 ~~l~~~d~~g~~-~----~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~------------~~~ 192 (297)
T 3g4e_A 130 GALYSLFPDHHV-K----KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR------------SVY 192 (297)
T ss_dssp EEEEEECTTSCE-E----EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE------------EEE
T ss_pred cEEEEEECCCCE-E----EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE------------EEE
Confidence 467777653221 1 1112223567899999999765 4455788988885 222211000 001
Q ss_pred eCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788 151 PLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS 202 (254)
Q Consensus 151 ~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~ 202 (254)
++. ........+++++++.++++. ..+.|.++|..++++.
T Consensus 193 ~~~------------~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 193 KLE------------KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp ECC------------GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred ECC------------CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 111 112346778888888776665 4668999999887754
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.81 E-value=4.4e-07 Score=77.71 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=98.3
Q ss_pred CEEEEecCC--eEEEEeCC---------------------------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE
Q psy12788 10 PYALSWPAG--YILAAGSD---------------------------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS 59 (254)
Q Consensus 10 v~~l~w~~~--~l~s~s~D---------------------------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~ 59 (254)
+..++|+|+ .|+.++.+ ..|.+|| ..|+.++.+. . + .+..++|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~-----~-~-~~~~~~~ 178 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE-----K-P-RFSSGIW 178 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE-----E-E-TTCEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec-----C-C-CcccccC
Confidence 789999984 57776632 5688999 5565535553 3 2 5778999
Q ss_pred CCCCCEEEEEeCC--------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC--------cEEE
Q psy12788 60 SPSGQAVVVGSYD--------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG--------SVEL 123 (254)
Q Consensus 60 sPdg~~la~gs~d--------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg--------~v~i 123 (254)
+||| ++++++.+ ..+||.++ .+.... . ..+ ..+..+ ||||++|+.++.++ .|.+
T Consensus 179 spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~--l--~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 179 HRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK--M--FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp ETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE--E--EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred CCCe-EEEEEecccccccccccccEEEeC--CCceEE--e--ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEE
Confidence 9999 77777543 34677766 222211 1 112 344444 99999999887543 6777
Q ss_pred EeeeeeeeEe-----ece----------eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECC
Q psy12788 124 FESVLKRTIW-----KGK----------FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTP 188 (254)
Q Consensus 124 wd~~~~~~~~-----~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d 188 (254)
|| .++... ... +.++...++...+| +.++ ....+... ...|..+++++ ..+++++++
T Consensus 249 ~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g---~~~~~~~~-~~~v~~~~~s~-~~~~~~~~~ 320 (347)
T 2gop_A 249 YD--GKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDG---EIKPIAKG-RHWIMGFDVDE-IVVYLKETA 320 (347)
T ss_dssp EC--SSCEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESS---SEEEEECS-SSEEEEEEESS-SEEEEEECS
T ss_pred EC--CCceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCC---ceEEEecC-CCeEEeeeeeC-cEEEEEcCC
Confidence 87 222110 011 11222334566677 6644 33333332 56788999998 555566666
Q ss_pred CcE-EEEeccCCce
Q psy12788 189 DTL-LLGDLHRNLL 201 (254)
Q Consensus 189 ~~i-~i~dl~~~~~ 201 (254)
.+. .||.+. ++.
T Consensus 321 ~~~~~l~~~~-g~~ 333 (347)
T 2gop_A 321 TRLRELFTWD-GEE 333 (347)
T ss_dssp SSCCEEEEES-SSE
T ss_pred CChHHheEeC-CcE
Confidence 543 677665 554
No 197
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.78 E-value=1.5e-06 Score=82.54 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=105.5
Q ss_pred CEEEEecCC--eEEEEeCCCc----------------EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe
Q psy12788 10 PYALSWPAG--YILAAGSDRI----------------VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 70 (254)
Q Consensus 10 v~~l~w~~~--~l~s~s~D~~----------------i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs 70 (254)
+..++|+|+ .|+.++.|+. |++|+ .+++....+.+... .++..+..++|||||++|+..+
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-DEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC-CCCeEEEEEEEcCCCCEEEEEE
Confidence 567999985 6888888766 99999 45441111113322 3556688999999999998875
Q ss_pred C-----C-cEEEEEecC------CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeee-----
Q psy12788 71 Y-----D-NIKLFAWSP------SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLK----- 129 (254)
Q Consensus 71 ~-----d-~i~l~d~~~------~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~----- 129 (254)
. + .+.+||... ....+. ....+...+.. .|+|||+.|+..+..+ .|.+||+..+
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGILKWV----KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSCCCE----EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EccCCCccEEEEEECcccccccCCccceE----EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 3 3 367777653 111111 11223333333 5999999988777543 5888987543
Q ss_pred eeEe-e-c-------------eeEEEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEE-EE---C
Q psy12788 130 RTIW-K-G-------------KFEMIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLV-AR---T 187 (254)
Q Consensus 130 ~~~~-~-~-------------~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v-~~---~ 187 (254)
+.+. . . .+.+++..++ ++.++++.++. ....+ ......+..+++++++. ++. .+ +
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~--~~~~l-~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 403 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA--LLKIF-PLEVGSVVGYSGQKKDTEIFYQFTSFLS 403 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC--EEEEE-CCCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC--EEEec-CCCCceEEEEecCCCCCEEEEEEeCCCC
Confidence 1111 1 1 1111222233 34556665552 12222 22245677888887663 333 22 2
Q ss_pred CCcEEEEeccCCc
Q psy12788 188 PDTLLLGDLHRNL 200 (254)
Q Consensus 188 d~~i~i~dl~~~~ 200 (254)
+.++.+||+.+++
T Consensus 404 P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 404 PGIIYHCDLTKEE 416 (710)
T ss_dssp CCEEEEEETTSSS
T ss_pred CCEEEEEECCCCc
Confidence 5689999999887
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.76 E-value=5.2e-05 Score=62.83 Aligned_cols=185 Identities=7% Similarity=-0.038 Sum_probs=113.8
Q ss_pred CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCC
Q psy12788 6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPS 82 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~ 82 (254)
+...|.+++++++ ..++...++.|..||.+|+. ..+.. . .....+.+++++|+|+++++...+ ++..+|.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~--- 127 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGII-KEYTL--P-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD--- 127 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEEC--S-STTCCEEEEEECTTSCEEEEETTTTEEEEECT---
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-EEEeC--C-CcCCCceeeEECCCCCEEEEecCCceEEEECC---
Confidence 3456889999874 44555557889999966653 33321 1 233568999999999988776555 4767764
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------ceeEEEEec----------CC
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-------GKFEMIYVS----------PS 145 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-------~~~~~~~~~----------~~ 145 (254)
...... .........+..+++.|+|+++++...++.|..||. .++.... ....+.+.. .+
T Consensus 128 ~g~~~~--~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 128 DGKIRE--YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp TCCEEE--EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CCCEEE--ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 111111 111112346899999999998887777889999987 4433210 112222222 33
Q ss_pred eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCceeeEe
Q psy12788 146 QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSEVL 205 (254)
Q Consensus 146 ~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~~~ 205 (254)
.+..++. ++. ...+. ......+..+.++++++++++. .++.|.++|. .+++..+.
T Consensus 205 ~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 261 (299)
T 2z2n_A 205 KIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYP 261 (299)
T ss_dssp EEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEE
T ss_pred eEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEe
Confidence 5566666 442 11221 1123468899999888877776 5679999998 56654443
No 199
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.71 E-value=3e-07 Score=79.83 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=60.7
Q ss_pred eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCC-c----EEEEEecCCCcceeecCceecCC
Q psy12788 24 GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYD-N----IKLFAWSPSKSVWEEQPNKTIPN 96 (254)
Q Consensus 24 s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d-~----i~l~d~~~~~~~~~~~~~~~~~~ 96 (254)
..+..|++|| .+|+..... .+...+..++|+| +|+.|+..+.+ . .+||.++........ ......
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK--IKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE--SSCCCT
T ss_pred CCcceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE--eeccCC
Confidence 3556799999 566654333 2345789999999 89877766532 1 234444332222211 111001
Q ss_pred CCcEeEEEEecCCCeEEEeecC-----CcEEEEeeeee
Q psy12788 97 LYTISALSWKRDGSRIACGGLC-----GSVELFESVLK 129 (254)
Q Consensus 97 ~~~i~~l~~spdG~~la~g~~d-----g~v~iwd~~~~ 129 (254)
...+..++|||||++|+.++.+ +.|.+||+.++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 2358889999999998888654 44999997654
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.70 E-value=2.4e-05 Score=68.81 Aligned_cols=156 Identities=9% Similarity=-0.039 Sum_probs=89.8
Q ss_pred cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-----------CcEEEEEecCCCcceeecCceecC
Q psy12788 28 IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-----------DNIKLFAWSPSKSVWEEQPNKTIP 95 (254)
Q Consensus 28 ~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-----------d~i~l~d~~~~~~~~~~~~~~~~~ 95 (254)
+|.++| .+++.+.++.. + ..+ .++|||||+.+.++.. +.+.++|....+..-. ....
T Consensus 48 ~v~v~D~~t~~~~~~i~~----g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~----i~~~ 116 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG----G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD----IELP 116 (373)
T ss_pred EEEEEECCCCeEEEEecC----C-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE----EECC
Confidence 889999 77887766641 2 122 8999999999888752 3477888643221111 1111
Q ss_pred ------CCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEee-ce-------------eEEEEecCCeEEEEeCC
Q psy12788 96 ------NLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWK-GK-------------FEMIYVSPSQVLVKPLS 153 (254)
Q Consensus 96 ------~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~-~~-------------~~~~~~~~~~~~v~~~~ 153 (254)
.......++|||||++|++++. ++.|.++| .+++.... -. .......++++.+++.
T Consensus 117 ~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~- 194 (373)
T 2mad_H 117 DAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH- 194 (373)
T ss_pred CccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence 0122457999999999999885 47899999 87765433 11 1123345667777777
Q ss_pred CCCceeeE-EEEe--c-CC-Cce-eEEEEecC-cEEEEEECCCcEEEEeccCC
Q psy12788 154 GESKGRGV-ILKS--Q-YG-YEI-TDVAIMGN-DRYLVARTPDTLLLGDLHRN 199 (254)
Q Consensus 154 ~~~~~~~~-~l~s--~-~~-~~i-~~i~~~~~-~~~~v~~~d~~i~i~dl~~~ 199 (254)
+++ .. .... . .+ ..+ ....+.++ +.++..+..+.+.+.|+.++
T Consensus 195 ~g~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 195 AGG---AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred CCc---EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 553 11 1110 0 01 111 11233333 24444445678888888755
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.66 E-value=1.3e-05 Score=71.37 Aligned_cols=226 Identities=10% Similarity=0.028 Sum_probs=124.6
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS 84 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~ 84 (254)
..|..|+|+++ ++++...++.|++||.++..+..+.. .. .... ++|+|+|+.|.++..++ -+||.+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~----~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP----GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE----TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec----cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 36889999874 45555567899999965544444421 11 2233 89999999888877653 23444433221
Q ss_pred ceeecCc-eecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------cee-EEEEec-CCeEEE
Q psy12788 85 VWEEQPN-KTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------GKF-EMIYVS-PSQVLV 149 (254)
Q Consensus 85 ~~~~~~~-~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------~~~-~~~~~~-~~~~~v 149 (254)
+..... .... ....+.+++++|++..|.++..++.|+.||...+....- .++ .+.+.. ++.+.+
T Consensus 205 -~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 205 -WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp -TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred -ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 110000 0002 234678899999545555577788899999754321110 123 555555 355555
Q ss_pred EeCCCCCc------eeeEEEEecC---C-----------CceeEEEEecCcEEEEEEC--CCcEEEEeccCCceeeEeCC
Q psy12788 150 KPLSGESK------GRGVILKSQY---G-----------YEITDVAIMGNDRYLVART--PDTLLLGDLHRNLLSEVLWP 207 (254)
Q Consensus 150 ~~~~~~~~------~~~~~l~s~~---~-----------~~i~~i~~~~~~~~~v~~~--d~~i~i~dl~~~~~~~~~~~ 207 (254)
.|...+.. +....+.... + .....|++++++.++++.+ ++.|+.+|+.++++..+.=.
T Consensus 284 ~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp EETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred EeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 54433210 0111111110 0 2367899998887777654 66999999888887655422
Q ss_pred C-----CCCc-eeEEeeCceEEEEEeC-CeeEEEEeecCee
Q psy12788 208 D-----SGRN-EKFYFDNVTVCLVFNA-GELSIIEYGNNEI 241 (254)
Q Consensus 208 ~-----~~g~-~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 241 (254)
. .+|. ..-.|.. -..+++++ |.+-+.+.+.+.|
T Consensus 364 ~~~~g~~~g~~~~~~~~~-P~giavd~~g~lyVad~~n~~I 403 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNY-PYDICYDGEGGYWIAEAWGKAI 403 (409)
T ss_dssp TTCBSCCCBSTTTCCBSS-EEEEEECSSSEEEEEESTTCEE
T ss_pred CCCCCcCCCChhceEeCC-ceEEEEcCCCCEEEEECCCCeE
Confidence 0 0000 0011222 34577777 7777777765543
No 202
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.63 E-value=1.2e-05 Score=68.09 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=96.6
Q ss_pred cCCCCCEEEEecCC-eEEEEe-CCCcEEEEeCCCCEEEEeeecCCCC-CCCCEEEEEECCCCCEEEE----EeCC-----
Q psy12788 5 QHPVPPYALSWPAG-YILAAG-SDRIVTIYESDGRVHRIFDYTAPHY-KEREFTVACSSPSGQAVVV----GSYD----- 72 (254)
Q Consensus 5 ~h~~~v~~l~w~~~-~l~s~s-~D~~i~vWd~~g~~~~~~~~~~~~~-~~~~v~~~a~sPdg~~la~----gs~d----- 72 (254)
.+...+..++++++ .|+.+. .++.|.+|+.+|+.. .+..... + ....++.++++|+|+++++ |..+
T Consensus 83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~-~~~~~~~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAH-LLVGRYA-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEECEET-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred CCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEE-EEEeccC-CCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence 34566889999874 455554 457899999767643 2211111 1 1234678999999999886 4321
Q ss_pred -------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC------CcEEEEeeeeeeeEeeceeEE
Q psy12788 73 -------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC------GSVELFESVLKRTIWKGKFEM 139 (254)
Q Consensus 73 -------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d------g~v~iwd~~~~~~~~~~~~~~ 139 (254)
.-.||.++...+.... . . .....+.++|+|||+.|.++... +.|..||...+. ....
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~~~--~--~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~---- 230 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPLQR--M--A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR---- 230 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCCEE--E--E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE----
T ss_pred ccccccCCCeEEEEcCCCCcEEE--E--e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC----
Confidence 2346665543332221 1 1 23456789999999988887765 678888864322 1000
Q ss_pred EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788 140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
.... .........+.+.+++.++++. .+.|.++|.....+..+
T Consensus 231 --------------------~~~~-~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~ 273 (305)
T 3dr2_A 231 --------------------RHFA-SVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHI 273 (305)
T ss_dssp --------------------EEEE-CCSSSCCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEE
T ss_pred --------------------eEEE-ECCCCCCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEE
Confidence 0000 0011234567788778877766 44688888754443333
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.63 E-value=1e-05 Score=67.92 Aligned_cols=185 Identities=8% Similarity=0.023 Sum_probs=107.2
Q ss_pred CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEE-eeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---------
Q psy12788 6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRI-FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--------- 73 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~-~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~--------- 73 (254)
+...|..++++++ .|..+..+..|.+||.+|+.... ...... .....+.+++++|+|+++++...+.
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCC-ccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 4466889999875 56666555579999955765422 110000 1123578999999999887765441
Q ss_pred -----EEEEEecCCCcceeecCceecCCCCcEeEEEEe----cCCCeEEEe-ecCCcEEEEeee-eeee-----Eee---
Q psy12788 74 -----IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK----RDGSRIACG-GLCGSVELFESV-LKRT-----IWK--- 134 (254)
Q Consensus 74 -----i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~s----pdG~~la~g-~~dg~v~iwd~~-~~~~-----~~~--- 134 (254)
..||.++.. ..... ...+......++|+ |||+.|.++ ..++.|.+||.. .++. ...
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~----~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQ----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEE----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ccCCCCeEEEECCC-CCEEE----eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence 356665543 22211 11222356889999 999766555 467899999965 2221 110
Q ss_pred ----ceeEEEE----------ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEEC-CCcEEEEeccC
Q psy12788 135 ----GKFEMIY----------VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVART-PDTLLLGDLHR 198 (254)
Q Consensus 135 ----~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~-d~~i~i~dl~~ 198 (254)
....+.+ ...+.+.+++..++. ....+ ......+..++|+++++ ++++.. ++.|..+|+..
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~--~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ--PKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS--CSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc--EeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 0111111 134566677766442 11222 22335688999988776 445543 46888888765
Q ss_pred C
Q psy12788 199 N 199 (254)
Q Consensus 199 ~ 199 (254)
.
T Consensus 300 ~ 300 (314)
T 1pjx_A 300 N 300 (314)
T ss_dssp C
T ss_pred C
Confidence 3
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.63 E-value=6.2e-07 Score=77.28 Aligned_cols=153 Identities=7% Similarity=-0.071 Sum_probs=96.5
Q ss_pred CCEEEEecCCeEEEEe--CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----------cE
Q psy12788 9 PPYALSWPAGYILAAG--SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----------NI 74 (254)
Q Consensus 9 ~v~~l~w~~~~l~s~s--~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----------~i 74 (254)
.+..+++..+.|..+. .+++|.++| .+++.++.+... .....++++|+|+++++...+ .+
T Consensus 132 ~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 132 STEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp BCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred CcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceE
Confidence 5667777666666555 488999999 678777766521 234678999999987776533 46
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG 154 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 154 (254)
.++|.. ...... ....+.......++|+|||++|.++.. .|.+||..+++.... . +
T Consensus 206 ~~id~~--t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~---------------~-- 261 (328)
T 3dsm_A 206 YRIDAE--TFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-P---------------F-- 261 (328)
T ss_dssp EEEETT--TTEEEE--EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-C---------------S--
T ss_pred EEEECC--CCeEEE--EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-e---------------e--
Confidence 677743 222211 112221235789999999999988765 888888754432100 0 0
Q ss_pred CCceeeEEEEecCCCceeEEEEec-CcEEEEEE-----CCCcEEEEeccCCce
Q psy12788 155 ESKGRGVILKSQYGYEITDVAIMG-NDRYLVAR-----TPDTLLLGDLHRNLL 201 (254)
Q Consensus 155 ~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~~-----~d~~i~i~dl~~~~~ 201 (254)
+ ...+.....++++| ++.++++. .+++|.+||.. +++
T Consensus 262 --------~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 262 --------L-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp --------B-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred --------e-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 0 00134577889987 45555654 46789999987 553
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.61 E-value=0.00015 Score=60.07 Aligned_cols=183 Identities=8% Similarity=-0.004 Sum_probs=110.2
Q ss_pred CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCC
Q psy12788 6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPS 82 (254)
Q Consensus 6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~ 82 (254)
....+.+++++++ ..++...++.|.+||.+++.. .+. .. .....+.+++++|+|+++++...+ ++..+|..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~--~~-~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIK-EFE--VP-TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEE--CS-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT--
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceE-EEE--CC-CCCCcceeEEECCCCCEEEEecCCCeEEEECCC--
Confidence 3457889999874 444544678999999556544 232 21 233578999999999987766544 47677633
Q ss_pred CcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-e------eceeEEEEecC----------
Q psy12788 83 KSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-W------KGKFEMIYVSP---------- 144 (254)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-~------~~~~~~~~~~~---------- 144 (254)
..... ...+ ....+..+++.|+|+++++...++.|..+|.. ++.. . .....+.+..+
T Consensus 92 -g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 92 -GGFTE---YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp -SCEEE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred -CCeEE---ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence 22211 1111 23568999999999988877778889888865 3322 1 11222222222
Q ss_pred CeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeE
Q psy12788 145 SQVLVKPLSGESKGRGVILKS-QYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~ 204 (254)
+.+..++. ++ ....+.. .....+..+.+.+++.++++.. .+.+.++|. +++...+
T Consensus 167 ~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 167 NSIGRITN-TG---KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp TEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CeEEEECC-CC---cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 34444554 33 1112211 1223578899988777777765 457999998 5554443
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.59 E-value=7.3e-06 Score=77.79 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=103.9
Q ss_pred cCCCCCEEEEecCC--eEE-----EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---
Q psy12788 5 QHPVPPYALSWPAG--YIL-----AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--- 73 (254)
Q Consensus 5 ~h~~~v~~l~w~~~--~l~-----s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~--- 73 (254)
+|...+..++|+|+ +|| .|+.+.+|++|| .+|+.+.... . . .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---~-~--~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---K-D--VKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---E-E--EESCCCEEE-TTTEEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc---C-C--ceeccEEEe-CCCEEEEEEecCccc
Confidence 35556788899985 455 233446899999 7777653211 0 1 112567999 999999887651
Q ss_pred -----------EEEEEecCCCcceeecCceecC--CCCcEeEEEEecCCCeEEEeec----CCcEEEEeeeee--e--eE
Q psy12788 74 -----------IKLFAWSPSKSVWEEQPNKTIP--NLYTISALSWKRDGSRIACGGL----CGSVELFESVLK--R--TI 132 (254)
Q Consensus 74 -----------i~l~d~~~~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~g~~----dg~v~iwd~~~~--~--~~ 132 (254)
+++|++......-.. ..+.+ +...+.++.|||||++|+.... ...+.++|+..+ . .+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~--v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRL--VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEE--EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceE--EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 555554322211000 11111 1234778999999999876554 247888886432 1 11
Q ss_pred ee---cee--------EEEEec-----CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCC---cEE
Q psy12788 133 WK---GKF--------EMIYVS-----PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPD---TLL 192 (254)
Q Consensus 133 ~~---~~~--------~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~---~i~ 192 (254)
.. ..+ .+.+.+ ..++..+++.++.......+..+....+ .|++++.++ +...++ .|.
T Consensus 277 ~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 277 QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEE
T ss_pred eCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEE
Confidence 10 111 111221 1367777887653101133444333333 666655444 444333 688
Q ss_pred EEeccCCceeeEeC
Q psy12788 193 LGDLHRNLLSEVLW 206 (254)
Q Consensus 193 i~dl~~~~~~~~~~ 206 (254)
++|+..+....+..
T Consensus 354 ~~d~~g~~~~~l~~ 367 (693)
T 3iuj_A 354 QFDYEGKRVREVAL 367 (693)
T ss_dssp EECTTSCEEEEECC
T ss_pred EEECCCCeeEEeec
Confidence 99998766555543
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.55 E-value=9.4e-06 Score=71.92 Aligned_cols=162 Identities=12% Similarity=0.020 Sum_probs=101.1
Q ss_pred CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-----------CCcEEEEEecCCCcceeecCcee
Q psy12788 26 DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-----------YDNIKLFAWSPSKSVWEEQPNKT 93 (254)
Q Consensus 26 D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-----------~d~i~l~d~~~~~~~~~~~~~~~ 93 (254)
+++|.+.| .+++.+.++.. +. .+ . +++||||+++.+++ .+.+.+||..+.+..- ...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~v----G~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~----~I~ 126 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDG----GF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----DIE 126 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEE----CS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE----EEE
T ss_pred CCEEEEEECCCCeEEEEEEC----CC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE----EEE
Confidence 67899999 78888877753 21 23 4 99999999876654 2348889865433211 111
Q ss_pred cCC------CCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEeec-------------eeEEEEecCCeEEEEeC
Q psy12788 94 IPN------LYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWKG-------------KFEMIYVSPSQVLVKPL 152 (254)
Q Consensus 94 ~~~------~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~ 152 (254)
.+. ......++|+|||+++.+++. ++.|.++|+.+++....- +.......++++.+.++
T Consensus 127 v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 127 LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEEC
Confidence 111 113556999999999998875 689999998766543211 11235567888888888
Q ss_pred CCCCceeeEEEEec-CC---Ccee-EEEEe-cCcEEEEEECCCcEEEEeccCCc
Q psy12788 153 SGESKGRGVILKSQ-YG---YEIT-DVAIM-GNDRYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 153 ~~~~~~~~~~l~s~-~~---~~i~-~i~~~-~~~~~~v~~~d~~i~i~dl~~~~ 200 (254)
.+.+ .....+.. .. ..+. ...|. ++++++..+.++++.+.|+.++.
T Consensus 207 ~~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 207 GTEG--TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 258 (386)
T ss_dssp CSSS--CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred CCCC--eEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence 7632 22221211 10 1121 24554 56677667778899999997664
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.55 E-value=3e-06 Score=80.32 Aligned_cols=183 Identities=6% Similarity=-0.055 Sum_probs=101.3
Q ss_pred EEEEecCC--eEEEEeCCCc-------------EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--
Q psy12788 11 YALSWPAG--YILAAGSDRI-------------VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-- 72 (254)
Q Consensus 11 ~~l~w~~~--~l~s~s~D~~-------------i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-- 72 (254)
..++|+|+ .|+.++.|.. |++|+ .+++....+-+... .+...+.+++|||||++|+.++.+
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 67899985 6888888876 99999 44541111113333 455678999999999998876633
Q ss_pred -cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec----CCcEEEEeeeeee-----eEe-ec------
Q psy12788 73 -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL----CGSVELFESVLKR-----TIW-KG------ 135 (254)
Q Consensus 73 -~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~----dg~v~iwd~~~~~-----~~~-~~------ 135 (254)
...||.++.....+.. ...+...+....| |||+ |+..+. ++.|.+||+..+. .+. ..
T Consensus 250 ~~~~l~~~~~~~~~~~~----l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFRL----LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL 323 (695)
T ss_dssp TEEEEEEECTTCSSCEE----EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred CceEEEEEcCCCCceEE----eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence 2456666443332221 1223334555566 7777 544443 5789999975432 111 11
Q ss_pred -------eeEEEEecCCeEEEEeCC-CCCceeeEEEEecCCCceeEEEEecCcE-EEE-EEC---CCcEEEEeccCCcee
Q psy12788 136 -------KFEMIYVSPSQVLVKPLS-GESKGRGVILKSQYGYEITDVAIMGNDR-YLV-ART---PDTLLLGDLHRNLLS 202 (254)
Q Consensus 136 -------~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v-~~~---d~~i~i~dl~~~~~~ 202 (254)
...+++..++..+++.+. .++ ....+.......+..+++++++. ++. .++ +.++++||+.+++..
T Consensus 324 ~~~~~~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 324 SVSIVGGHLSLEYLKDATSEVRVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEECCEEEEEEEECCEEEEEEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 111222334444444333 221 11111111134566777777653 332 322 468999999988753
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.50 E-value=2.5e-08 Score=87.84 Aligned_cols=169 Identities=7% Similarity=-0.016 Sum_probs=90.0
Q ss_pred cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCcee
Q psy12788 16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT 93 (254)
Q Consensus 16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~ 93 (254)
..+.+++++.|+.|+.|| .+|+++.++. . .++.+..+.++|+.+++++.|+ ++.||....+..|... ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-----~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~--~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-----E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP--FT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-----C--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS--CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-----C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee--cc
Confidence 456899999999999999 8999987765 2 2344555667888888877775 8888876655555431 11
Q ss_pred cCCCCcEe-EEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece------------eEEEEecCCeEEEEeCCCCCceee
Q psy12788 94 IPNLYTIS-ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK------------FEMIYVSPSQVLVKPLSGESKGRG 160 (254)
Q Consensus 94 ~~~~~~i~-~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~ 160 (254)
.+ ..+. +.... ++..+++|+.++.+..||..+++.++... .......++.+..+|..+++.--.
T Consensus 79 ~~--~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 79 IP--ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HH--HHHTTCSCC------CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred Cc--cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 10 0010 00111 45577888999999999998887654321 111122345677777777641000
Q ss_pred EEEEecCCCceeEEEEecC----cEEEEEECCCcEEEEeccCCce
Q psy12788 161 VILKSQYGYEITDVAIMGN----DRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 161 ~~l~s~~~~~i~~i~~~~~----~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
.... ......+.++ +.+++++.++.++.+|..+|++
T Consensus 156 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 156 ATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred Eecc-----cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 1110 1112222321 5677888899999999999875
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.47 E-value=0.00032 Score=60.07 Aligned_cols=175 Identities=7% Similarity=-0.048 Sum_probs=98.8
Q ss_pred CEEEEecCC---eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcce
Q psy12788 10 PYALSWPAG---YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVW 86 (254)
Q Consensus 10 v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~ 86 (254)
....+|+++ .+++...++.|..||..+.....+. .+..+.+++|+|+|+++++. .+++.+||..... .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~------~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~--~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA------LPFMGSALAKISDSKQLIAS-DDGLFLRDTATGV--L 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE------CSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCC--E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE------CCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCc--E
Confidence 467889873 4666667889999995554444442 23569999999999887654 5667788854322 2
Q ss_pred eecCceecC---CCCcEeEEEEecCCCeEEEeec------CCcEEEEeeeeeeeEe--e---ceeEEEEec---------
Q psy12788 87 EEQPNKTIP---NLYTISALSWKRDGSRIACGGL------CGSVELFESVLKRTIW--K---GKFEMIYVS--------- 143 (254)
Q Consensus 87 ~~~~~~~~~---~~~~i~~l~~spdG~~la~g~~------dg~v~iwd~~~~~~~~--~---~~~~~~~~~--------- 143 (254)
.. ..... ....+++++++|||+++++... .+.|..+| .++... . ....+.+..
T Consensus 122 ~~--~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 122 TL--HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EE--EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EE--EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 11 11111 1236899999999997765442 23444444 222111 0 011122222
Q ss_pred --CCeEEEEeCC--CC-CceeeEEEEec--CCCceeEEEEecCcEEEEEE-CCCcEEEEecc
Q psy12788 144 --PSQVLVKPLS--GE-SKGRGVILKSQ--YGYEITDVAIMGNDRYLVAR-TPDTLLLGDLH 197 (254)
Q Consensus 144 --~~~~~v~~~~--~~-~~~~~~~l~s~--~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~ 197 (254)
.+++.++++. ++ .......+... .......+.+++++.++++. .++.|.++|..
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 3456666664 33 11011112111 12346678888777766665 45788889874
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.46 E-value=3.8e-05 Score=65.00 Aligned_cols=101 Identities=13% Similarity=-0.008 Sum_probs=65.2
Q ss_pred ccCCCCCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788 4 VQHPVPPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW 79 (254)
Q Consensus 4 ~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~ 79 (254)
..+...+...+|++ + .+++...++.|..|+.+|+. ..+. .+...+..++++|+|+++++...+ ++.+|+.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~-----~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLL-----DATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEE-----ESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEe-----CCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 34445567889987 3 46777778899999977763 3332 233568999999999977665444 4777774
Q ss_pred cCCCcceeecCceecCC--CCcEeEEEEecCCCeEEE
Q psy12788 80 SPSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIAC 114 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~i~~l~~spdG~~la~ 114 (254)
+ +..... ...... ...+++++++|||+++++
T Consensus 115 ~---g~~~~~-~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 115 D---GQAHLL-VGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp T---SCEEEE-ECEETTEECSCCCCEEECTTSCEEEE
T ss_pred C---CCEEEE-EeccCCCccCCCCCEEECCCCCEEEe
Confidence 3 212110 000111 235778999999998886
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.44 E-value=5.1e-05 Score=64.04 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=62.8
Q ss_pred CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc
Q psy12788 9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV 85 (254)
Q Consensus 9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~ 85 (254)
-..+..|++ + .+++...+++|..||..+.....+. ....+.+++++|+|++++. ..+++.+||... ..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~------~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~--g~ 84 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT------MDAPVSSVALRQSGGYVAT-IGTKFCALNWKE--QS 84 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE------CSSCEEEEEEBTTSSEEEE-ETTEEEEEETTT--TE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe------CCCceEEEEECCCCCEEEE-ECCeEEEEECCC--Cc
Confidence 456788987 2 4666667889999995443333332 2357999999999996554 455788888543 22
Q ss_pred eeecCceecC---CCCcEeEEEEecCCCeEEEee
Q psy12788 86 WEEQPNKTIP---NLYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 86 ~~~~~~~~~~---~~~~i~~l~~spdG~~la~g~ 116 (254)
... ..... ....++.++++|||+++++..
T Consensus 85 ~~~--~~~~~~~~~~~~~~di~~d~dG~l~~~~~ 116 (297)
T 3g4e_A 85 AVV--LATVDNDKKNNRFNDGKVDPAGRYFAGTM 116 (297)
T ss_dssp EEE--EEECCTTCSSEEEEEEEECTTSCEEEEEE
T ss_pred EEE--EEecCCCCCCCCCCCEEECCCCCEEEecC
Confidence 221 11111 123688999999999776543
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.41 E-value=1.7e-05 Score=75.77 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=100.0
Q ss_pred EEEEecCC-eEEEEeCCCc--------------EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--
Q psy12788 11 YALSWPAG-YILAAGSDRI--------------VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-- 72 (254)
Q Consensus 11 ~~l~w~~~-~l~s~s~D~~--------------i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-- 72 (254)
..++|+|+ .|+.++.|.. |++|+ .++.....+-+... .++..+..++|||||++|+..+.+
T Consensus 212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECCCCCEEEEEEEccC
Confidence 56789885 6777777654 88898 44431111113322 344468899999999998876632
Q ss_pred ----cEEEEEecCCCcc-eeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeee--e--eEe-e----
Q psy12788 73 ----NIKLFAWSPSKSV-WEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLK--R--TIW-K---- 134 (254)
Q Consensus 73 ----~i~l~d~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~--~--~~~-~---- 134 (254)
.+.+||....... +.. ...+...+... ++|||+.|+..+.+ +.|.+||+..+ . .+. .
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~----l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTA----LIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEE----EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred CCcceEEEEECCCCCCcccEE----ecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 3667776543111 211 11222233333 45999999988764 44888987542 1 111 0
Q ss_pred --------ceeEEEEecCCeEEEEeCC-CCCceeeEEEEecCCCceeEEEEecCcE-EE-EEE---CCCcEEEEeccCCc
Q psy12788 135 --------GKFEMIYVSPSQVLVKPLS-GESKGRGVILKSQYGYEITDVAIMGNDR-YL-VAR---TPDTLLLGDLHRNL 200 (254)
Q Consensus 135 --------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~-v~~---~d~~i~i~dl~~~~ 200 (254)
+...++...++...++.+. .++ ....+.......+..+++++++. ++ +.+ ++.++++||+.+++
T Consensus 366 l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 366 LESVGIAGNRLFASYIHDAKSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEBTEEEEEEEETTEEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEECCEEEEEEEECCEEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 1112223334444444332 221 11122111234577888887654 33 222 24689999999887
Q ss_pred e
Q psy12788 201 L 201 (254)
Q Consensus 201 ~ 201 (254)
.
T Consensus 444 ~ 444 (741)
T 1yr2_A 444 T 444 (741)
T ss_dssp E
T ss_pred E
Confidence 4
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.39 E-value=0.00093 Score=58.60 Aligned_cols=108 Identities=7% Similarity=0.021 Sum_probs=65.2
Q ss_pred EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeec-CCCC-CCCCEEEEEECCCCCEEEEEeC--C-c
Q psy12788 12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYT-APHY-KEREFTVACSSPSGQAVVVGSY--D-N 73 (254)
Q Consensus 12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~-~~~~-~~~~v~~~a~sPdg~~la~gs~--d-~ 73 (254)
.++++|+ .|+.+. .+++|.++| .+++.+..+... .... +......++|+|||++|.+++. + .
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 7888874 566654 367899999 677777666421 0000 0123457899999999988764 2 4
Q ss_pred EEEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeee
Q psy12788 74 IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKR 130 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~ 130 (254)
+.++| ...+.. .. ++... ++.+.|+|+ .+++.+.||.+.++|. +++
T Consensus 150 v~viD-~t~~~~------~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 150 VGLVV-QGGSSD------DQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred EEEEE-CCCCEE------eEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 77888 643321 12 22211 245556653 4455667788877777 543
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.36 E-value=0.00071 Score=55.85 Aligned_cols=182 Identities=7% Similarity=-0.069 Sum_probs=108.5
Q ss_pred CCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCC
Q psy12788 7 PVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSK 83 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~ 83 (254)
...+..++++++ ..++...++.|..+|.+|+.. .+.. . .....+.+++++|+|+++++...+ ++..++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~-~~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--- 133 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFT-EYPL--P-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--- 133 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEEC--S-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT---
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeE-EecC--C-CCCCCCccceECCCCCEEEEccCCCeEEEECCC---
Confidence 356888999873 444444577899999667653 3322 1 233568999999999988776544 46666632
Q ss_pred cceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-e------ceeEEEEecC----------C
Q psy12788 84 SVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-K------GKFEMIYVSP----------S 145 (254)
Q Consensus 84 ~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-~------~~~~~~~~~~----------~ 145 (254)
..... ...+ ....+..+++.|+|+++++...++.|..+|. .++... . ....+.+..+ +
T Consensus 134 g~~~~---~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 134 GTIYE---YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp SCEEE---EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CCEEE---ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 21111 1112 2346899999999997776666788999986 332211 0 1122222222 2
Q ss_pred eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeE
Q psy12788 146 QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 146 ~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~ 204 (254)
.+..++. ++ ...... ......+..|++++++.++++.. ++.|..+|. ++++..+
T Consensus 210 ~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 210 KIGRITT-TG---EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp EEEEECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred EEEEEcC-CC---cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence 4555555 33 111111 11234578899998887777664 578999998 4555444
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.33 E-value=9e-05 Score=65.23 Aligned_cols=98 Identities=8% Similarity=-0.094 Sum_probs=65.4
Q ss_pred EEEEeCCC----cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------C-cEEEEEecCCC
Q psy12788 20 ILAAGSDR----IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------D-NIKLFAWSPSK 83 (254)
Q Consensus 20 l~s~s~D~----~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d-~i~l~d~~~~~ 83 (254)
.++-..++ +|.+.| .+++.+.++.. +. .+ .++|+|||+++.++.. + .+.+||..+.+
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~v----G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSLG----AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEEE----CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEeC----CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 44444455 788999 78888888763 22 24 7999999998887751 3 48899865433
Q ss_pred cceeecCceecCC------CCcEeEEEEecCCCeEEEeec--CCcEEE--Eeeee
Q psy12788 84 SVWEEQPNKTIPN------LYTISALSWKRDGSRIACGGL--CGSVEL--FESVL 128 (254)
Q Consensus 84 ~~~~~~~~~~~~~------~~~i~~l~~spdG~~la~g~~--dg~v~i--wd~~~ 128 (254)
.... ...+. -.....+++||||++++++.. ...|.+ +|..+
T Consensus 108 vv~~----I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIAD----IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEE----EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEE----EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 2211 11110 013456999999999999985 356888 99865
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.31 E-value=3.7e-05 Score=69.00 Aligned_cols=171 Identities=10% Similarity=0.000 Sum_probs=100.4
Q ss_pred cCCeEEEEeC-C----CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-----------CcEEEEE
Q psy12788 16 PAGYILAAGS-D----RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-----------DNIKLFA 78 (254)
Q Consensus 16 ~~~~l~s~s~-D----~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-----------d~i~l~d 78 (254)
+++.+..+.. + ++|.+.| .+++.+.++.. +. .+ .++++|||+++.++.. +.+.++|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v----G~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG----GF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE----CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC----CC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 3444444443 3 6899999 78888888763 21 23 7999999998777652 2477888
Q ss_pred ecCCCcceeecCceecC------CCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEeec-------------ee
Q psy12788 79 WSPSKSVWEEQPNKTIP------NLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWKG-------------KF 137 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~~-------------~~ 137 (254)
....+..- ....+ .......+.|||||+++.+++. ++.|.+.|+.+++....- ..
T Consensus 156 ~~t~~vv~----~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~ 231 (426)
T 3c75_H 156 PVTFLPIA----DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTV 231 (426)
T ss_dssp TTTCCEEE----EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred CCCCcEEE----EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcE
Confidence 54433211 11111 0123456899999999999875 578999998765543211 11
Q ss_pred EEEEecCCeEEEEeCCCCCceeeEEEEe---cCC-Cce-eEEEEecCc-EEEEEECCCcEEEEeccCCc
Q psy12788 138 EMIYVSPSQVLVKPLSGESKGRGVILKS---QYG-YEI-TDVAIMGND-RYLVARTPDTLLLGDLHRNL 200 (254)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s---~~~-~~i-~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~ 200 (254)
.+.+..++++.+.++.++. ...... ..+ .++ ..+.+.+++ +++.....+++.+.|+..+.
T Consensus 232 ~v~~~~dG~~~~V~~~~~~---v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGE---TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp EEEEETTSSEEEEECCTTC---CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred EEEEcCCCCEEEEECCCCc---EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 2345566777767774442 111100 000 111 134556554 44555566789999987654
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.29 E-value=0.00028 Score=60.43 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=68.9
Q ss_pred CCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC-CCCEEEEEECCCCCEEEEEeC-----CcEEEE
Q psy12788 6 HPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK-EREFTVACSSPSGQAVVVGSY-----DNIKLF 77 (254)
Q Consensus 6 h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~-~~~v~~~a~sPdg~~la~gs~-----d~i~l~ 77 (254)
++..|.+++|+++ .++.++.+ .|.+|| .+|+.. .+..... .. ...++.++++|+|+++++... ....||
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEeeCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 3457889999874 44445544 599999 566643 2321101 11 235889999999998765432 124566
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeee
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV 127 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~ 127 (254)
.++ . ..... ...+......++|+|||+.|..+ +.++.|.+||..
T Consensus 165 ~~~-~-g~~~~----~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 165 HVA-K-GKVTK----LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEE-T-TEEEE----EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred EEe-C-CcEEE----eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 655 2 22211 11122346789999999977555 457889999974
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.07 E-value=0.00085 Score=57.71 Aligned_cols=120 Identities=2% Similarity=-0.007 Sum_probs=71.9
Q ss_pred cCCCCCEEEEecCC-eEEEEeC------CCcEEEEe-CCCCEEEEeeecCC-CCCCCCEEEEEECCCC-CEEEEEe---C
Q psy12788 5 QHPVPPYALSWPAG-YILAAGS------DRIVTIYE-SDGRVHRIFDYTAP-HYKEREFTVACSSPSG-QAVVVGS---Y 71 (254)
Q Consensus 5 ~h~~~v~~l~w~~~-~l~s~s~------D~~i~vWd-~~g~~~~~~~~~~~-~~~~~~v~~~a~sPdg-~~la~gs---~ 71 (254)
+|-..|..++++++ .|..+.. +.+|.+|| .+|+.++.+..... ..+...+..++++|++ ..+++.+ .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 35567999999984 4544432 57899999 67877777653211 0122356899999865 4445544 3
Q ss_pred C-cEEEEEecCCCcceeecCc---------------eecC----------CCCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788 72 D-NIKLFAWSPSKSVWEEQPN---------------KTIP----------NLYTISALSWKRDGSRIACGGLCGSVELFE 125 (254)
Q Consensus 72 d-~i~l~d~~~~~~~~~~~~~---------------~~~~----------~~~~i~~l~~spdG~~la~g~~dg~v~iwd 125 (254)
+ ++.+||+...+ .+..... ..+. -...+..|+|||||+.|.++..++. ++|.
T Consensus 144 ~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~ 221 (343)
T 2qe8_A 144 KAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYR 221 (343)
T ss_dssp GCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEE
T ss_pred CCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEE
Confidence 4 48888865322 2221000 0000 0123688999999999998887774 4454
Q ss_pred e
Q psy12788 126 S 126 (254)
Q Consensus 126 ~ 126 (254)
+
T Consensus 222 ~ 222 (343)
T 2qe8_A 222 I 222 (343)
T ss_dssp E
T ss_pred E
Confidence 3
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.00 E-value=0.00044 Score=62.01 Aligned_cols=183 Identities=9% Similarity=0.059 Sum_probs=103.7
Q ss_pred EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeec-CCCC-CCCCEEEEEECCCCCEEEEEeC--C-c
Q psy12788 12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYT-APHY-KEREFTVACSSPSGQAVVVGSY--D-N 73 (254)
Q Consensus 12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~-~~~~-~~~~v~~~a~sPdg~~la~gs~--d-~ 73 (254)
.++++|+ .|+.+. .++.|.++| .+++.++++... .... .......++|+|||+++.++.. + .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 7888884 455554 367899999 788888777532 0000 0122346799999999888764 2 4
Q ss_pred EEEEEecCCCcceeecCceecCC---------------------------CCcE----------------eEEEEecCCC
Q psy12788 74 IKLFAWSPSKSVWEEQPNKTIPN---------------------------LYTI----------------SALSWKRDGS 110 (254)
Q Consensus 74 i~l~d~~~~~~~~~~~~~~~~~~---------------------------~~~i----------------~~l~~spdG~ 110 (254)
+.+.|....+..-.. ..+. ...+ ..+.|+|||.
T Consensus 202 VsVID~~t~kvv~~I----~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRML----DVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEE----ECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEE----EcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 778886543221110 0000 0000 1134566666
Q ss_pred eEEEeecCCcEEEEeeeeeee------------------Eee----------ceeEEEEec----------CCeEEEEeC
Q psy12788 111 RIACGGLCGSVELFESVLKRT------------------IWK----------GKFEMIYVS----------PSQVLVKPL 152 (254)
Q Consensus 111 ~la~g~~dg~v~iwd~~~~~~------------------~~~----------~~~~~~~~~----------~~~~~v~~~ 152 (254)
.++..+..+.|.+.|...+.. ... +........ .+++.+.|+
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 666666667777777632110 000 111111111 135778888
Q ss_pred CCCCceeeEEEEecCCCceeEEEEecCcE--EEEEE-CCCcEEEEeccCCcee
Q psy12788 153 SGESKGRGVILKSQYGYEITDVAIMGNDR--YLVAR-TPDTLLLGDLHRNLLS 202 (254)
Q Consensus 153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~-~d~~i~i~dl~~~~~~ 202 (254)
.+.+.-..+ ..+.....|.|+++++ ++++. .++++.+.|+.++++.
T Consensus 358 ~T~kvv~~I----~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 358 ETGERINKI----ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TTCCEEEEE----EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCeEEEEE----ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 877421222 2244678899998875 45566 4889999999999875
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.91 E-value=0.0025 Score=56.46 Aligned_cols=112 Identities=9% Similarity=-0.060 Sum_probs=63.2
Q ss_pred EEecC--CeEEEEeCCC--cEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEecCCCcc
Q psy12788 13 LSWPA--GYILAAGSDR--IVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSKSV 85 (254)
Q Consensus 13 l~w~~--~~l~s~s~D~--~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~~~~~~ 85 (254)
++|++ +.|+++..++ .|.+++. .+.....+..... .....+.+++++| +|.+++ +..++ ++.||.......
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~ 253 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT 253 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE
Confidence 77876 3677777655 7888883 3433333311101 1335678899999 565555 44454 777775432211
Q ss_pred eeecCceecCCCC--cEeEEEEecC-CCeEEEeecCCcEEEEeee
Q psy12788 86 WEEQPNKTIPNLY--TISALSWKRD-GSRIACGGLCGSVELFESV 127 (254)
Q Consensus 86 ~~~~~~~~~~~~~--~i~~l~~spd-G~~la~g~~dg~v~iwd~~ 127 (254)
.... ........ +...++|+|+ |.++++-..++.|+.||..
T Consensus 254 ~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 254 LIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp EEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred EEec-ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 1000 00111111 1238999995 6666666678889999853
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.91 E-value=0.0089 Score=51.51 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=100.6
Q ss_pred EecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCc
Q psy12788 14 SWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN 91 (254)
Q Consensus 14 ~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~ 91 (254)
+...+.|+.++.|+.+..+| .+|+.+..+..... ....+ ... +..+.+++.++ +..+|....+..|.....
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-ALSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-CCSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-eEcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 33456788889999999999 78998866542211 11111 121 34666677675 888887666667754211
Q ss_pred eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeE-----------------------EEEe--cCCe
Q psy12788 92 KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFE-----------------------MIYV--SPSQ 146 (254)
Q Consensus 92 ~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~-----------------------~~~~--~~~~ 146 (254)
............... +..+.+++.+|.+..+|..+++.++..... ..+. .++.
T Consensus 173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 000000000112222 456777888999999998777665432110 0111 2456
Q ss_pred EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788 147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
+...|..+++ ....... .....+... ++.++++..++.+..+|..+|+..
T Consensus 251 l~~~d~~tG~----~~w~~~~-~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 251 LTALDLRSGQ----IMWKREL-GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp EEEEETTTCC----EEEEECC-CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEEECCCCc----EEeeccC-CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEE
Confidence 7777777773 2222222 234445555 467888888899999999999864
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.88 E-value=0.0005 Score=60.83 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred EEEECCCCCEEEEEeC-----C-cEEEEEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEee----------cC
Q psy12788 56 VACSSPSGQAVVVGSY-----D-NIKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGG----------LC 118 (254)
Q Consensus 56 ~~a~sPdg~~la~gs~-----d-~i~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~----------~d 118 (254)
.....|+++.+-+... + .+.++|..+.+-. ..++ ...+ . +++||||+++.+++ .+
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~------~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI------GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE------EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE------EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 3456899988766653 3 4777775432211 1222 2223 4 99999999998876 25
Q ss_pred CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC--CCcEEEEe
Q psy12788 119 GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART--PDTLLLGD 195 (254)
Q Consensus 119 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~--d~~i~i~d 195 (254)
+.|.+||..+.+....- .+..+. +...+..-..++|+|++++ +++.. ++++.+.|
T Consensus 109 ~~VsviD~~t~~v~~~I---------------~v~~g~-------r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID 166 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADI---------------ELPDAP-------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD 166 (386)
T ss_dssp EEEEEECTTTCCEEEEE---------------EETTCC-------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred CEEEEEECCCCeEEEEE---------------ECCCcc-------ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE
Confidence 67888887554432110 000000 0011234567888888864 34443 57899999
Q ss_pred ccCCcee-eEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeec-Cee
Q psy12788 196 LHRNLLS-EVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGN-NEI 241 (254)
Q Consensus 196 l~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 241 (254)
+.++++. .+.- +.....|.-.......+-.+|++.++..+. +.+
T Consensus 167 ~~t~~vv~tI~v--~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 167 LEGKAFKRMLDV--PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp TTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCCcEEEEEEC--CCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 9999864 3321 211112222222222333347788888775 444
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.84 E-value=0.002 Score=60.96 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=73.1
Q ss_pred CeEEEEeC------CCcEEEEe-CCCCEEEEeeecCCCCC----------------------------CCCEEEEEECCC
Q psy12788 18 GYILAAGS------DRIVTIYE-SDGRVHRIFDYTAPHYK----------------------------EREFTVACSSPS 62 (254)
Q Consensus 18 ~~l~s~s~------D~~i~vWd-~~g~~~~~~~~~~~~~~----------------------------~~~v~~~a~sPd 62 (254)
+.++.++. |+.|+.+| .+|+.+..+..... .. ......++++|+
T Consensus 175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~-~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG-DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC-CTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC-CccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence 45555543 78999999 89999877753211 00 001135789999
Q ss_pred CCEEEEEeCCc--------------------EEEEEecCCCcceeecCcee----cCCCCcEeEEEEecCC---CeEEEe
Q psy12788 63 GQAVVVGSYDN--------------------IKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRDG---SRIACG 115 (254)
Q Consensus 63 g~~la~gs~d~--------------------i~l~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~spdG---~~la~g 115 (254)
+.+|.++..+. +..+|..+.+..|....... ........-+....|| ..++.+
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence 98888776542 66777666677776421100 0001223334555689 789999
Q ss_pred ecCCcEEEEeeeeeeeEe
Q psy12788 116 GLCGSVELFESVLKRTIW 133 (254)
Q Consensus 116 ~~dg~v~iwd~~~~~~~~ 133 (254)
+.+|.+.++|..+++.++
T Consensus 334 ~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp CTTSEEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCCCEec
Confidence 999999999988776653
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.82 E-value=0.0014 Score=61.92 Aligned_cols=185 Identities=11% Similarity=0.039 Sum_probs=94.5
Q ss_pred EEEEec-CCeEEEEeCCC-------------cEEEEe-CCCCEEEEeeecCCCC-CCCCEEEEEECCCCCEEEEEeC---
Q psy12788 11 YALSWP-AGYILAAGSDR-------------IVTIYE-SDGRVHRIFDYTAPHY-KEREFTVACSSPSGQAVVVGSY--- 71 (254)
Q Consensus 11 ~~l~w~-~~~l~s~s~D~-------------~i~vWd-~~g~~~~~~~~~~~~~-~~~~v~~~a~sPdg~~la~gs~--- 71 (254)
..++|+ .+.|+.++.|. .|++|+ .++.....+-+... . ++..+.+++|||||++|+....
T Consensus 178 ~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 456776 34688777774 389998 34321101113322 3 4456789999999998865432
Q ss_pred -C-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-C---CcEEEEeeeeeee------Eee-----
Q psy12788 72 -D-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-C---GSVELFESVLKRT------IWK----- 134 (254)
Q Consensus 72 -d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-d---g~v~iwd~~~~~~------~~~----- 134 (254)
. .+.++|.......+.. ...+....... |+|+|..|+.-+. + +.|..+|+..+.. ...
T Consensus 257 ~~~~i~~~d~~~~~~~~~~----l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 331 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLT----VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL 331 (693)
T ss_dssp SCCEEEEEETTSTTCCCEE----EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred CCcEEEEEECCCCCCceEE----EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence 2 3566665432222211 12222333333 7888877765553 2 5688888654221 111
Q ss_pred -----ceeE-EEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEEC----CCcEEEEeccCCce
Q psy12788 135 -----GKFE-MIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVART----PDTLLLGDLHRNLL 201 (254)
Q Consensus 135 -----~~~~-~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~----d~~i~i~dl~~~~~ 201 (254)
+.+. .....++ ++.++++..+ ....+.-.....+..+.+++++ .++...+ ..++..+|+.+++.
T Consensus 332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 1111 1112222 4566676543 2222211111245555555554 3333333 37899999988875
Q ss_pred eeE
Q psy12788 202 SEV 204 (254)
Q Consensus 202 ~~~ 204 (254)
..+
T Consensus 409 ~~l 411 (693)
T 3iuj_A 409 SLY 411 (693)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.80 E-value=0.00029 Score=61.99 Aligned_cols=181 Identities=7% Similarity=-0.076 Sum_probs=101.9
Q ss_pred EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeecCCCCC---CCCEEEEEECCCCCEEEEEeCC---
Q psy12788 12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYTAPHYK---EREFTVACSSPSGQAVVVGSYD--- 72 (254)
Q Consensus 12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~~~~~~---~~~v~~~a~sPdg~~la~gs~d--- 72 (254)
.++++|+ .+..+. .+++|.+|| .+++.+.++..... +. ......++|+|||+++.++...
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-PRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-CSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-cccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 7888874 566654 378899999 88899888763200 00 0123468999999998887642
Q ss_pred cEEE--EEecCCCcceeecCc----------------------eecC-------------------CCCcEeEEEEecCC
Q psy12788 73 NIKL--FAWSPSKSVWEEQPN----------------------KTIP-------------------NLYTISALSWKRDG 109 (254)
Q Consensus 73 ~i~l--~d~~~~~~~~~~~~~----------------------~~~~-------------------~~~~i~~l~~spdG 109 (254)
.+.+ +|... ......... .... ...+. + +|++
T Consensus 148 ~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 148 AAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp EEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred eEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 3666 66422 000000000 0000 00111 2 5666
Q ss_pred CeEEEeecCCcEEEEeeeeee--eE------------------------e--eceeEE-EEe---c-----CCeEEEEeC
Q psy12788 110 SRIACGGLCGSVELFESVLKR--TI------------------------W--KGKFEM-IYV---S-----PSQVLVKPL 152 (254)
Q Consensus 110 ~~la~g~~dg~v~iwd~~~~~--~~------------------------~--~~~~~~-~~~---~-----~~~~~v~~~ 152 (254)
..++..+. +.|.+.|...+. .. . ++.... ... . .+.+.+.|+
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~ 301 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence 66666666 788888864211 00 0 111111 112 1 135568888
Q ss_pred CCCCceeeEEEEecCCCceeEEEEecCcE--EEEEE-CCCcEEEEeccCCceee
Q psy12788 153 SGESKGRGVILKSQYGYEITDVAIMGNDR--YLVAR-TPDTLLLGDLHRNLLSE 203 (254)
Q Consensus 153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~-~d~~i~i~dl~~~~~~~ 203 (254)
.+.+. .-+-..+.....|+|+++++ |++.. .++++.++|+.++++..
T Consensus 302 ~t~~v----v~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 302 SVGQT----SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp SSCCE----EECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCeE----EEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 88741 11112244688999999875 44455 48999999999998753
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.74 E-value=0.004 Score=58.98 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=70.5
Q ss_pred cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEE-EEECCCCCEEEEEeC------Cc-EEEEEecCCCcce
Q psy12788 16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTV-ACSSPSGQAVVVGSY------DN-IKLFAWSPSKSVW 86 (254)
Q Consensus 16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~-~a~sPdg~~la~gs~------d~-i~l~d~~~~~~~~ 86 (254)
..+.|+.++.|+.+..+| .+|+.+..+....+......+++ ... .+..+.+++. ++ ++.+|..+.+..|
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 456788899999999999 79999877753201000011211 111 2344445442 43 7888877777777
Q ss_pred eecCceec---------------------------CCCCcEeEEEEecCCCeEEEeecCC-------------------c
Q psy12788 87 EEQPNKTI---------------------------PNLYTISALSWKRDGSRIACGGLCG-------------------S 120 (254)
Q Consensus 87 ~~~~~~~~---------------------------~~~~~i~~l~~spdG~~la~g~~dg-------------------~ 120 (254)
........ .+......+++.|++.++..++.++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 54211000 0001124688999999999888764 4
Q ss_pred EEEEeeeeeeeEee
Q psy12788 121 VELFESVLKRTIWK 134 (254)
Q Consensus 121 v~iwd~~~~~~~~~ 134 (254)
|..+|..+++.++.
T Consensus 285 v~AlD~~TG~~~W~ 298 (677)
T 1kb0_A 285 IVALDPDTGKYKWH 298 (677)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 88889888776653
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.71 E-value=0.0024 Score=53.30 Aligned_cols=156 Identities=6% Similarity=0.112 Sum_probs=91.8
Q ss_pred CCCCC--EEEEecCC-eEEEEeCCC--cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-EEEE
Q psy12788 6 HPVPP--YALSWPAG-YILAAGSDR--IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLF 77 (254)
Q Consensus 6 h~~~v--~~l~w~~~-~l~s~s~D~--~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i~l~ 77 (254)
|+... ..|.|+.+ +..+.|.++ .|++.| .+|+.++.+.. . .........++|+.|-.... ++ +.++
T Consensus 39 hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~----~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 39 HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--G----KRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--C----TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec--C----CccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 44444 67788754 456777765 899999 88999887752 1 22333333345555555553 33 6788
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK 157 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (254)
|..+.+.. ..++... ....+++||+.|..+..++.|.++|..+.+....
T Consensus 113 D~~t~~~~------~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~----------------------- 161 (262)
T 3nol_A 113 NIRNLRQV------RSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT----------------------- 161 (262)
T ss_dssp ETTTCCEE------EEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-----------------------
T ss_pred ECccCcEE------EEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-----------------------
Confidence 85433321 1222211 2245567999988888788898888765443211
Q ss_pred eeeEEEEecCC---CceeEEEEecCcEEEEEE-CCCcEEEEeccCCceee
Q psy12788 158 GRGVILKSQYG---YEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSE 203 (254)
Q Consensus 158 ~~~~~l~s~~~---~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~ 203 (254)
+.+.. .+ ..++.+.+. ++++.++. .++.|.+.|.++|++..
T Consensus 162 ---I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 162 ---ITVTA-HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG 206 (262)
T ss_dssp ---EECEE-TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred ---EEecc-CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence 11100 01 123456665 46655555 47799999999999753
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.70 E-value=0.0011 Score=59.76 Aligned_cols=113 Identities=11% Similarity=0.180 Sum_probs=71.1
Q ss_pred CEEEEecCC--eEEEEe-------------------CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE--CCCCCE
Q psy12788 10 PYALSWPAG--YILAAG-------------------SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS--SPSGQA 65 (254)
Q Consensus 10 v~~l~w~~~--~l~s~s-------------------~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~--sPdg~~ 65 (254)
.+.+-|+|+ .+++.. .+.+|.+|| .+++.+++++... .......++| +|+|++
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~---~g~~P~~i~f~~~Pdg~~ 266 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE---ENRMALELRPLHDPTKLM 266 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT---TEEEEEEEEECSSTTCCE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC---CCCccceeEeeECCCCCE
Confidence 455777774 566653 368999999 6677777775311 1123445555 999998
Q ss_pred EEEEeC-----C--cEEEEEecCCCcceeecCceecCC-----------------CCcEeEEEEecCCCeEEEeec-CCc
Q psy12788 66 VVVGSY-----D--NIKLFAWSPSKSVWEEQPNKTIPN-----------------LYTISALSWKRDGSRIACGGL-CGS 120 (254)
Q Consensus 66 la~gs~-----d--~i~l~d~~~~~~~~~~~~~~~~~~-----------------~~~i~~l~~spdG~~la~g~~-dg~ 120 (254)
+-+++. . .+.+|.++. +.|+......++. ......|.+||||++|.+++. .+.
T Consensus 267 aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~ 344 (462)
T 2ece_A 267 GFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE 344 (462)
T ss_dssp EEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred EEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence 777664 3 366666553 4443211110111 134788999999999988875 678
Q ss_pred EEEEeee
Q psy12788 121 VELFESV 127 (254)
Q Consensus 121 v~iwd~~ 127 (254)
|.+||+.
T Consensus 345 VavfdV~ 351 (462)
T 2ece_A 345 VRQYDIS 351 (462)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 8888863
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.68 E-value=0.0035 Score=52.54 Aligned_cols=153 Identities=10% Similarity=0.015 Sum_probs=90.0
Q ss_pred CEEEEecC-CeEEEE-eC--CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEEEEecCC
Q psy12788 10 PYALSWPA-GYILAA-GS--DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKLFAWSPS 82 (254)
Q Consensus 10 v~~l~w~~-~~l~s~-s~--D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l~d~~~~ 82 (254)
+..++|++ ..|..+ +. +++|++.| .+|+.++++.. . .+. -...++++ |+.|-.+... + +.++|..+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~-~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--D-DSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--C-TTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--C-CCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 57999998 455544 33 57899999 88998887752 1 222 22345554 5555555543 3 677884432
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI 162 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (254)
+. ...++.. .-....++|||+++.++..++.|.++|..+.+.... +.
T Consensus 97 ~v------~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~--------------------------I~ 143 (266)
T 2iwa_A 97 SN------IKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK--------------------------HN 143 (266)
T ss_dssp EE------EEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE--------------------------EE
T ss_pred cE------EEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE--------------------------EE
Confidence 21 1122111 011245778999988888888999998755432211 11
Q ss_pred EEec--CCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788 163 LKSQ--YGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS 202 (254)
Q Consensus 163 l~s~--~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~ 202 (254)
+... .-..++.+.+. +++..+.. .++.|.+-|..++++.
T Consensus 144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence 1100 00124566666 56655555 4679999999999864
No 231
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.67 E-value=0.019 Score=48.43 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCC-------C--------CCCCEEEEEECC-CCCEEEEEe
Q psy12788 9 PPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPH-------Y--------KEREFTVACSSP-SGQAVVVGS 70 (254)
Q Consensus 9 ~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~-------~--------~~~~v~~~a~sP-dg~~la~gs 70 (254)
.+.+++|+++ .+.++..++.|..||..+..+..+...... + ....+.+++++| +|+++++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 5778999873 488888899999999655434444211000 0 012478999998 776665544
Q ss_pred CCcEEEEEecCCCcceeecCceecC--CCCcEeEEEEec-CCCeEEEeec-----------------CCcEEEEeeee
Q psy12788 71 YDNIKLFAWSPSKSVWEEQPNKTIP--NLYTISALSWKR-DGSRIACGGL-----------------CGSVELFESVL 128 (254)
Q Consensus 71 ~d~i~l~d~~~~~~~~~~~~~~~~~--~~~~i~~l~~sp-dG~~la~g~~-----------------dg~v~iwd~~~ 128 (254)
..++..+|.. .+..... ..... .......+++.| +|++.++-.. +|.|..+|...
T Consensus 100 ~~~i~~~d~~--~g~~~~~-~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 100 YYHLSVVGSE--GGHATQL-ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp TTEEEEECTT--CEECEEE-ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred CCCEEEEeCC--CCEEEEe-cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 4456666632 2211110 00011 123578899999 9987766432 36677787643
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.66 E-value=0.0033 Score=52.57 Aligned_cols=153 Identities=9% Similarity=-0.042 Sum_probs=88.5
Q ss_pred EEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788 11 YALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE 87 (254)
Q Consensus 11 ~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~ 87 (254)
..|.|+.+ +.++.+.++.|++.| .+|+.++.+ . . +. .---.+++..+ ++......++ +.++|..+.+.
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~-~~-~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~--- 128 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R--L-GN-IFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQR--- 128 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E--C-TT-CCEEEEEECSS-CEEEEESSSCEEEEEETTTTEE---
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C--C-CC-cceeEEEEeCC-EEEEEEccCCEEEEEECCcCcE---
Confidence 67888775 567888888999999 889887766 2 2 21 11234555433 3333333343 67888443221
Q ss_pred ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecC
Q psy12788 88 EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQY 167 (254)
Q Consensus 88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 167 (254)
...++.... ....++||+.|..+..++.|.++|..+.+.... +.+.+ .+ ..
T Consensus 129 ---~~ti~~~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~------------I~V~~--~g---~~------- 179 (268)
T 3nok_A 129 ---ERTTRYSGE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGA------------VQVKL--RG---QP------- 179 (268)
T ss_dssp ---EEEEECSSC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEE------------EECEE--TT---EE-------
T ss_pred ---EEEEeCCCc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEE------------EEeCC--CC---cc-------
Confidence 112222221 234457899988888889999999765443311 00000 00 00
Q ss_pred CCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788 168 GYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS 202 (254)
Q Consensus 168 ~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~ 202 (254)
-..++.+.+. ++++.++. .++.|.+-|.++|++.
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence 0134556666 46655555 4779999999999874
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.63 E-value=0.017 Score=48.28 Aligned_cols=164 Identities=14% Similarity=0.044 Sum_probs=93.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecC
Q psy12788 17 AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIP 95 (254)
Q Consensus 17 ~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~ 95 (254)
.+.|..++.++.+..+|..|+....+. .....+.++...++|.+++ |+.+ ++..+|.. ....|.. . .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~-----~~~~~~~~~~~~~~g~l~v-gt~~~~l~~~d~~-g~~~~~~----~-~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFK-----TKKAIYATPIVSEDGTIYV-GSNDNYLYAINPD-GTEKWRF----K-T 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEE-----CSSCCCSCCEECTTSCEEE-ECTTSEEEEECTT-SCEEEEE----E-C
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEc-----CCCceeeeeEEcCCCEEEE-EcCCCEEEEECCC-CCEeEEE----e-c
Confidence 457888888999999995587765543 2233466778888888654 5655 57777754 3434432 1 1
Q ss_pred CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece------eEE---------EEecCCeEEEEeCCCCCceee
Q psy12788 96 NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK------FEM---------IYVSPSQVLVKPLSGESKGRG 160 (254)
Q Consensus 96 ~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~---------~~~~~~~~~v~~~~~~~~~~~ 160 (254)
....+.++...++|.+++.. +.+..+| ..++..+... ..+ ....++.+..++. ++ ..
T Consensus 175 ~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~ 246 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TE 246 (330)
T ss_dssp SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CE
T ss_pred CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CE
Confidence 23356777888888866544 8888888 4443332110 001 1112334444442 22 11
Q ss_pred EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 161 VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 161 ~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
+......+..+..+.+..++.+++++.++.+..+|. +++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 247 KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE
T ss_pred eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcE
Confidence 111112222234455665677888888888888885 4543
No 234
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.62 E-value=0.004 Score=59.56 Aligned_cols=103 Identities=10% Similarity=-0.059 Sum_probs=57.6
Q ss_pred CCEEEEec-CC--eEEEE-eC----CCcEEEEe-CCC-CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---c-E
Q psy12788 9 PPYALSWP-AG--YILAA-GS----DRIVTIYE-SDG-RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---N-I 74 (254)
Q Consensus 9 ~v~~l~w~-~~--~l~s~-s~----D~~i~vWd-~~g-~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~-i 74 (254)
.+...+|+ |+ .||-+ .. ..+|+++| .+| +.+.. .-+.....++|+|||+.|+....+ . .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSGTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence 56788999 85 45422 22 23599999 556 42200 001123468999999988877654 1 3
Q ss_pred EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788 75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 118 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d 118 (254)
+||-+......-+...............+.|||||++|+..+.+
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~ 291 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQS 291 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEEC
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecC
Confidence 45555443321100001111222346788999999999877643
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.53 E-value=0.0037 Score=56.21 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=93.0
Q ss_pred EEEecCC-eEEEEeCC------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-------------
Q psy12788 12 ALSWPAG-YILAAGSD------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS------------- 70 (254)
Q Consensus 12 ~l~w~~~-~l~s~s~D------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs------------- 70 (254)
.+...|+ .++++..+ +.+.+.| .+++.+.++..... ...--+.+.|+|+++.+.+..
T Consensus 142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG--DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT--TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC--CccccceEEECCCCCEEEEccCcCccccccccch
Confidence 3444554 44454444 6799999 77888877752211 112234688899999888875
Q ss_pred -------CCcEEEEEecCCCcceeecCceecCCC-CcEeEEEE--ecCCCeEEEeec------CCcEEEEeeeeeeeEee
Q psy12788 71 -------YDNIKLFAWSPSKSVWEEQPNKTIPNL-YTISALSW--KRDGSRIACGGL------CGSVELFESVLKRTIWK 134 (254)
Q Consensus 71 -------~d~i~l~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~--spdG~~la~g~~------dg~v~iwd~~~~~~~~~ 134 (254)
.|++.+||+...+. .. ....... .....|.| +|||+++.+++. +++|.+|....++
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~-~~---tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~---- 291 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKR-IH---SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK---- 291 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEE-EE---EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE----
T ss_pred hhhhhccCCEEEEEECCCCcE-ee---EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc----
Confidence 35699999875321 11 1122111 12344555 999999988885 5688777653221
Q ss_pred ceeEEEEecCCeEEEEeCCCCCceeeEEEEec------CCCceeEEEEecCcEEEE-EEC-CCcEEEEecc
Q psy12788 135 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ------YGYEITDVAIMGNDRYLV-ART-PDTLLLGDLH 197 (254)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~------~~~~i~~i~~~~~~~~~v-~~~-d~~i~i~dl~ 197 (254)
+.. ..+.++.+... .. .+-.. .+.....|.++++++||- +.. .++|.++|+.
T Consensus 292 --~~~-------~~vIdi~~~~v-~~-~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 292 --WNA-------EKVIEIPAEPL-EG-NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp --EEE-------EEEEEECCEEC-CS-SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred --eeE-------EEEEeCCCccc-cc-cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 111 11122221100 00 00000 023577899999997653 333 6799999985
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.53 E-value=0.0084 Score=49.46 Aligned_cols=155 Identities=10% Similarity=0.051 Sum_probs=88.4
Q ss_pred CEEEEecCCe-EEEEeCC--CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEEEecCCC
Q psy12788 10 PYALSWPAGY-ILAAGSD--RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPSK 83 (254)
Q Consensus 10 v~~l~w~~~~-l~s~s~D--~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~d~~~~~ 83 (254)
...|.|+++. ..+.+.+ ..|+..| .+|+.++.+... . ........++++.|-... .++ +.++|..+.+
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---~---~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP---P---PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC---T---TCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC---C---CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence 5588898764 5566665 4899999 889998877522 1 222233333455544444 333 6788843322
Q ss_pred cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788 84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL 163 (254)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 163 (254)
. ...++... ....+.+||+.|.++..++.|.++|..+.+.... +.+.+ .+ ..
T Consensus 97 ~------~~ti~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~------------I~V~~--~g---~~--- 148 (243)
T 3mbr_X 97 P------RARFRYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS------------IKVTA--GG---RP--- 148 (243)
T ss_dssp E------EEEEECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEE------------EECEE--TT---EE---
T ss_pred E------EEEEeCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE------------EEEcc--CC---cc---
Confidence 1 11222222 2244557899888888889999999765433211 00000 00 00
Q ss_pred EecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCceee
Q psy12788 164 KSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSE 203 (254)
Q Consensus 164 ~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~ 203 (254)
=..++.+.+. +++..+.. .++.|.+-|..+|++..
T Consensus 149 ----~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 149 ----LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp ----CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred ----cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence 0124455555 45655554 57799999999999753
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.53 E-value=0.03 Score=47.00 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-CcEEEEEecCCCc
Q psy12788 8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DNIKLFAWSPSKS 84 (254)
Q Consensus 8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~i~l~d~~~~~~ 84 (254)
..+..++|+++ .+++-..++.|..||.+|+....+. ....+..++++|+|+++++... ++.+++.+.....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence 45788999874 4445456788999997776654432 1245889999999997665543 3434444332232
Q ss_pred ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788 85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 127 (254)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~ 127 (254)
.... ............++..+++..+++-..+|.|..+|..
T Consensus 106 ~~~~--~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 106 TVET--LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp CEEE--EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred eEEE--EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 2221 1112222234455656666555555568888888864
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.50 E-value=0.0062 Score=51.03 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=94.2
Q ss_pred EEEEecC-CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeec
Q psy12788 11 YALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQ 89 (254)
Q Consensus 11 ~~l~w~~-~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~ 89 (254)
.++..++ ..|..++.++.+..+|..|+.+..+. .....+.++.+.++|.+++.. .++..+| ......|...
T Consensus 140 ~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~-----~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 140 ATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK-----TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp SCCEECTTSCEEEECTTSEEEEECTTSCEEEEEE-----CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEEC
T ss_pred eeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe-----cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEc
Confidence 3344443 46788888899999995588776554 223456778888899876544 6677887 4444445431
Q ss_pred CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec----e-----------eEEEEecCCeEEEEeCCC
Q psy12788 90 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG----K-----------FEMIYVSPSQVLVKPLSG 154 (254)
Q Consensus 90 ~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~----~-----------~~~~~~~~~~~~v~~~~~ 154 (254)
.....+.++...++|.+. +++.++.+..+|. .++..+.. . .......++.+..+|. +
T Consensus 212 -----~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 212 -----AGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp -----CSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-T
T ss_pred -----cCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-C
Confidence 122457888888888654 5667788888874 22222110 0 0011111224555553 3
Q ss_pred CCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788 155 ESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH 197 (254)
Q Consensus 155 ~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~ 197 (254)
+ .........+..+.++.+..++++++++.++.+.+...+
T Consensus 284 g---~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 284 G---TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp S---CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred C---cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 3 111111222334556666556677777777777665543
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.49 E-value=0.0083 Score=56.88 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCcEEEEe-CCCCEEEEeeecCCCCC--------------------------CCCEEEEEECCCCCEEEEEeCCc-----
Q psy12788 26 DRIVTIYE-SDGRVHRIFDYTAPHYK--------------------------EREFTVACSSPSGQAVVVGSYDN----- 73 (254)
Q Consensus 26 D~~i~vWd-~~g~~~~~~~~~~~~~~--------------------------~~~v~~~a~sPdg~~la~gs~d~----- 73 (254)
|+.|+.|| .+|+++..+......+. ......++++|++.+|.+++.+.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 78999999 89998877642100000 01113678999989888887652
Q ss_pred ---------------EEEEEecCCCcceeecCcee----cCCCCcEeEEEEecCCC---eEEEeecCCcEEEEeeeeeee
Q psy12788 74 ---------------IKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRDGS---RIACGGLCGSVELFESVLKRT 131 (254)
Q Consensus 74 ---------------i~l~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~spdG~---~la~g~~dg~v~iwd~~~~~~ 131 (254)
+..+|..+.+..|....... .....++.......+|+ .++.++.+|.+.++|..+++.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 77888777777886421100 00111222233445786 899999999999999887776
Q ss_pred E
Q psy12788 132 I 132 (254)
Q Consensus 132 ~ 132 (254)
+
T Consensus 342 l 342 (689)
T 1yiq_A 342 L 342 (689)
T ss_dssp E
T ss_pred e
Confidence 5
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.41 E-value=0.0038 Score=57.95 Aligned_cols=162 Identities=10% Similarity=0.088 Sum_probs=98.6
Q ss_pred EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE-C-CCCCEEEEEeC------------------C-cEEEE
Q psy12788 20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS-S-PSGQAVVVGSY------------------D-NIKLF 77 (254)
Q Consensus 20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~-s-Pdg~~la~gs~------------------d-~i~l~ 77 (254)
.++...+..|.+-| .+.++.+.+.. +....+..+++ + |+++++.+++. + .+-+.
T Consensus 105 fVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 105 FMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 45555666799999 66677765532 22235778898 5 99999888742 1 24566
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC---------------cEEEEeeeee-eeEeeceeEEEE
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG---------------SVELFESVLK-RTIWKGKFEMIY 141 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg---------------~v~iwd~~~~-~~~~~~~~~~~~ 141 (254)
|..+.+-.|+. .... ...-++.+|||+++.+.+.+. .|.+.|.... .....+++..
T Consensus 181 D~~t~~v~~qI----~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~-- 252 (595)
T 1fwx_A 181 DADKWEVAWQV----LVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE-- 252 (595)
T ss_dssp ETTTTEEEEEE----EESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE--
T ss_pred ECCCCeEEEEE----EeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE--
Confidence 64433333322 1111 234588999999999999764 3555553211 1111233321
Q ss_pred ecCCeEEEEeCCC--CCcee-eEEEEecCCCceeEEEEecCcEEEEEEC--CCcEEEEeccCC
Q psy12788 142 VSPSQVLVKPLSG--ESKGR-GVILKSQYGYEITDVAIMGNDRYLVART--PDTLLLGDLHRN 199 (254)
Q Consensus 142 ~~~~~~~v~~~~~--~~~~~-~~~l~s~~~~~i~~i~~~~~~~~~v~~~--d~~i~i~dl~~~ 199 (254)
. +.+.|.|.++ +. . ...+ ..+.....+.++|+++|+.+.. ++++.+.|+.+.
T Consensus 253 i--~~V~VID~~~~~~~--~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 253 L--NGVKVVDGRKEASS--LFTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp E--TTEEEEECSGGGCC--SSEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred E--CcEEEEeCcccCCc--eeEEEE--ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 2 4588889887 42 1 1112 1244677899999998766544 779999999965
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.38 E-value=0.055 Score=46.45 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=97.2
Q ss_pred CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC-----CCCEEE-EEECCCCCEEEEEeCCc-EEEEEecCCCcceee
Q psy12788 17 AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK-----EREFTV-ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEE 88 (254)
Q Consensus 17 ~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~-----~~~v~~-~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~ 88 (254)
.+.|+.++.++.|..+| .+|+.+..+..... .. ...+.+ .+. ++..+.+++.++ +..+|....+..|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEK-DGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC----CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccc-cccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 35688888899999999 68998866543110 00 122322 222 345666677774 888887766777754
Q ss_pred cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-------------E----EEEe--cCCeEEE
Q psy12788 89 QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-------------E----MIYV--SPSQVLV 149 (254)
Q Consensus 89 ~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------~----~~~~--~~~~~~v 149 (254)
. .... ....... ++..+.+++.++.+..+|..+++.++.... . ..+. .++.+..
T Consensus 130 ~----~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 130 K----VAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSA 202 (376)
T ss_dssp E----CSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEE
T ss_pred e----CCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEE
Confidence 1 1111 0111112 244777888899999999887766543211 0 0112 2446777
Q ss_pred EeCCCCCceeeEEEEecCCCc-----------e-eEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788 150 KPLSGESKGRGVILKSQYGYE-----------I-TDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 150 ~~~~~~~~~~~~~l~s~~~~~-----------i-~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
+|..++. ...+...+.. + ....+. ++.+++++.++.+..+|+.+|+..
T Consensus 203 ~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 203 VLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp EETTTCC----EEEEEECCC-----------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEE
T ss_pred EECCCCc----EEEEEecccCCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEE
Confidence 7777763 1111111100 1 111222 466777777889999999999854
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.33 E-value=0.0018 Score=55.70 Aligned_cols=119 Identities=5% Similarity=0.013 Sum_probs=73.8
Q ss_pred CCCEEEEecC--Ce-EEEEe---CCCcEEEEe-CCCCEEEEeee--cCCC--------C--------------CCCCEEE
Q psy12788 8 VPPYALSWPA--GY-ILAAG---SDRIVTIYE-SDGRVHRIFDY--TAPH--------Y--------------KEREFTV 56 (254)
Q Consensus 8 ~~v~~l~w~~--~~-l~s~s---~D~~i~vWd-~~g~~~~~~~~--~~~~--------~--------------~~~~v~~ 56 (254)
..+..+++++ .. .++-+ .++.|.+|| .+|+..+.+.. .... + -...+..
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g 199 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG 199 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence 4568889985 24 35544 678999999 66776654421 0000 0 0123688
Q ss_pred EEECCCCCEEEEEeCCcEEEEEecCC---Ccceee----cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788 57 ACSSPSGQAVVVGSYDNIKLFAWSPS---KSVWEE----QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 126 (254)
Q Consensus 57 ~a~sPdg~~la~gs~d~i~l~d~~~~---~~~~~~----~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~ 126 (254)
++|+|||+.|.++...+-++|.+... ...... .......+......+++++||+++++...++.|.+||.
T Consensus 200 ia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 200 IVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred eEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 99999999888887765457765421 000000 00011112234567999999999999888999999986
No 243
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.29 E-value=0.0062 Score=58.25 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=38.4
Q ss_pred CEEEEEEC-CCCCEEEEEeC----Cc--EEEEEecCC-CcceeecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788 53 EFTVACSS-PSGQAVVVGSY----DN--IKLFAWSPS-KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 118 (254)
Q Consensus 53 ~v~~~a~s-Pdg~~la~gs~----d~--i~l~d~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d 118 (254)
.+...+|| |||++||-+.. +. ++++|+... .. .. ..++ .....++|||||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~----~~~~--~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA----DKVS--GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC----CCEE--EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC----cccc--CceeeEEEecCCCEEEEEEEC
Confidence 67889999 99999986532 22 667775543 21 00 0111 123578999999999888765
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.27 E-value=0.0023 Score=60.72 Aligned_cols=110 Identities=10% Similarity=0.202 Sum_probs=73.0
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEeeecCC-----------------------CCC-----------CCCEEEEEECCCC
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAP-----------------------HYK-----------EREFTVACSSPSG 63 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~-----------------------~~~-----------~~~v~~~a~sPdg 63 (254)
.++.++.++.++++| .+|+++....+... ... ......++|+|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 578888999999999 89998754432100 000 0011237899998
Q ss_pred CEEEEEeC---------------------------------------------Cc-EEEEEecCCCcceeecCceecCCC
Q psy12788 64 QAVVVGSY---------------------------------------------DN-IKLFAWSPSKSVWEEQPNKTIPNL 97 (254)
Q Consensus 64 ~~la~gs~---------------------------------------------d~-i~l~d~~~~~~~~~~~~~~~~~~~ 97 (254)
.++.++.. ++ ++.||..+.+..|+.. ..
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~------~~ 474 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP------YV 474 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE------ES
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc------CC
Confidence 88776532 22 6778877666667531 11
Q ss_pred CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788 98 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 134 (254)
Q Consensus 98 ~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~ 134 (254)
.++..-.++..|.+++.|+.||.++.||..+++.++.
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 2233346777888999999999999999988877654
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.19 E-value=6.4e-05 Score=65.85 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=55.4
Q ss_pred CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788 18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP 95 (254)
Q Consensus 18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~ 95 (254)
+.|++++.|++++.|| .+|+.+..+. .+. ...++|++..+++++.|+ ++.||....+..|... ..
T Consensus 93 ~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~~ 159 (369)
T 2hz6_A 93 GILYMGKKQDIWYVIDLLTGEKQQTLS-----SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT----YF 159 (369)
T ss_dssp --CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCCCEEE----EE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEec-----CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe----cc
Confidence 3577788899999999 7898875553 221 245678888998988875 8888877666667531 10
Q ss_pred CCCcEeEEEEecCC---CeEEEeecCCcEEEEeeeeeeeEee
Q psy12788 96 NLYTISALSWKRDG---SRIACGGLCGSVELFESVLKRTIWK 134 (254)
Q Consensus 96 ~~~~i~~l~~spdG---~~la~g~~dg~v~iwd~~~~~~~~~ 134 (254)
.....++++++ ..+++++.+|.+..||..+++.++.
T Consensus 160 ---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 160 ---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp ---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred ---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 12233444443 5677789999999999988877654
No 246
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.17 E-value=0.12 Score=46.07 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=66.2
Q ss_pred CCCEEEEecC----CeEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---cEEEEEe
Q psy12788 8 VPPYALSWPA----GYILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---NIKLFAW 79 (254)
Q Consensus 8 ~~v~~l~w~~----~~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~i~l~d~ 79 (254)
..|..|+|++ ..|..+-..+.|+.+|. +|. +..+. ........++|+|+|+++++...+ ...++.+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v~~~~-----~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-VDIKT-----TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-EEEEC-----CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-EEEee-----cCCCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence 3578999996 45666544478999995 554 43332 223458899999999966654321 2112222
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeee
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLK 129 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~ 129 (254)
.. ...+.. ............+++.| +|.++++-..++.|+.+|...+
T Consensus 213 ~~-~~~~~~--~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 213 TR-ASGFTE--RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CG-GGTTCC--EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred EC-CCCeec--cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 11 111110 01111223456789999 6776666666788888887533
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.15 E-value=0.075 Score=43.35 Aligned_cols=108 Identities=6% Similarity=-0.074 Sum_probs=62.0
Q ss_pred CCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCC
Q psy12788 9 PPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSK 83 (254)
Q Consensus 9 ~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~ 83 (254)
.+..++|++ +.|. +-..++.|.+++.+|.....+. . ........++++|++..|..+... ++.+++.+...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~---~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-R---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-C---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-E---CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 356888986 3444 4445678999996665333331 1 122467899999986655554433 47777754221
Q ss_pred cceeecCceecCCCCcEeEEEEecCCCeEEEeecC---CcEEEEe
Q psy12788 84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC---GSVELFE 125 (254)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d---g~v~iwd 125 (254)
.. ............++++|++.+|..+... +.|..++
T Consensus 113 ~~-----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 113 RR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp CE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred EE-----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 11 0011122457899999976666555532 4555544
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.13 E-value=0.078 Score=43.24 Aligned_cols=155 Identities=10% Similarity=-0.004 Sum_probs=86.5
Q ss_pred CCCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeC---CcEEEEEec
Q psy12788 8 VPPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSY---DNIKLFAWS 80 (254)
Q Consensus 8 ~~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~---d~i~l~d~~ 80 (254)
..+..+++++ ..|. +-...+.|.+++.+|...+.+. . ........++++|++.. +++... ..+..++.+
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-D---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-E---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 4678888875 3444 4445678999987665433332 1 11245789999996554 444332 235555643
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR 159 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (254)
.... . ............++++|++.+|..+. ..+.|..+|.......
T Consensus 155 g~~~--~---~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--------------------------- 202 (267)
T 1npe_A 155 GTNR--R---ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------------------------- 202 (267)
T ss_dssp SCCC--E---EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---------------------------
T ss_pred CCCc--E---EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE---------------------------
Confidence 2111 1 00111234578899999987766555 4567888876322110
Q ss_pred eEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788 160 GVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS 202 (254)
Q Consensus 160 ~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~ 202 (254)
..+ .. ......+++. ++.++++. ..+.|.+.|..++++.
T Consensus 203 -~~~-~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 203 -KVL-EG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp -EEE-EC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred -EEe-cC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 000 01 1123455665 35555555 4578999999888754
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.91 E-value=0.11 Score=43.38 Aligned_cols=158 Identities=9% Similarity=-0.021 Sum_probs=84.5
Q ss_pred CEEEEEECCCCCEEEEEeC---CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeee
Q psy12788 53 EFTVACSSPSGQAVVVGSY---DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVL 128 (254)
Q Consensus 53 ~v~~~a~sPdg~~la~gs~---d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~ 128 (254)
....++|+|||.++++.+. +.++++|..+.+-.- ....+.......++ ++|+.|..++ .++.+.++|..+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~----~i~l~~~~fgeGi~--~~g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN----IHKMDDSYFGEGLT--LLNEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE----EEECCTTCCEEEEE--EETTEEEEEETTCSEEEEEETTT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE----EEecCCCcceEEEE--EeCCEEEEEEecCCEEEEEECCC
Confidence 3679999999876666543 248888865433211 11122222222344 4565555554 567888888655
Q ss_pred eeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee-eEeC
Q psy12788 129 KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS-EVLW 206 (254)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~-~~~~ 206 (254)
.+.+..- ..+ .-....+++++ +++++..++++.+.|..+.++. .+.-
T Consensus 96 ~~v~~~i------------------------------~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 96 LSNIKNF------------------------------THQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp TEEEEEE------------------------------ECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEE------------------------------ECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 4433110 001 00012233333 4555556779999999987643 2221
Q ss_pred CCCCCc------eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788 207 PDSGRN------EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIP 248 (254)
Q Consensus 207 ~~~~g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 248 (254)
. ..++ +.-..++....-.|..+++.+|+....++++++.++
T Consensus 145 g-~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 145 K-YNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp E-ETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred C-CCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence 1 1111 111123333334444578888988888888888874
No 250
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.90 E-value=0.21 Score=44.33 Aligned_cols=113 Identities=7% Similarity=0.054 Sum_probs=67.5
Q ss_pred CCEEEEecC---CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C---cEEEEEecC
Q psy12788 9 PPYALSWPA---GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D---NIKLFAWSP 81 (254)
Q Consensus 9 ~v~~l~w~~---~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d---~i~l~d~~~ 81 (254)
.|..|+++| ..|..+...+.|+.+|.++..+..+. ........++|+|+|++|.++.. + ...++-+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-----~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-----SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-----CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-----cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 578899996 35666555478999997666555543 22345789999999995555443 1 112222211
Q ss_pred CCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeee
Q psy12788 82 SKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLK 129 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~ 129 (254)
...+.. ...+........++++| +|.++++-..++.|..+|...+
T Consensus 213 -~g~~~~--~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 213 -ESGFKV--ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp -GGTSCS--EEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred -CCceee--eeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 111110 01111223457799999 6777766667788999987533
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.82 E-value=0.13 Score=48.50 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=67.6
Q ss_pred CCcEEEEe-CCCCEEEEeeecCCCCC--------------------------CCCEEEEEECCCCCEEEEEeCCc-----
Q psy12788 26 DRIVTIYE-SDGRVHRIFDYTAPHYK--------------------------EREFTVACSSPSGQAVVVGSYDN----- 73 (254)
Q Consensus 26 D~~i~vWd-~~g~~~~~~~~~~~~~~--------------------------~~~v~~~a~sPdg~~la~gs~d~----- 73 (254)
++.|+.+| .+|+++..+........ ......++++|++.++.+++.+.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 58899999 79999877752110000 00112478999888887776542
Q ss_pred ---------------EEEEEecCCCcceeecCceecCC-------CCcEeEEEEecCCC---eEEEeecCCcEEEEeeee
Q psy12788 74 ---------------IKLFAWSPSKSVWEEQPNKTIPN-------LYTISALSWKRDGS---RIACGGLCGSVELFESVL 128 (254)
Q Consensus 74 ---------------i~l~d~~~~~~~~~~~~~~~~~~-------~~~i~~l~~spdG~---~la~g~~dg~v~iwd~~~ 128 (254)
+..+|..+.+..|.... .++ ..++.......||+ .++.++.+|.+.++|..+
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~---~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 333 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV---TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN 333 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeec---CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence 66777667777786421 111 12333334456887 789999999999999887
Q ss_pred eeeE
Q psy12788 129 KRTI 132 (254)
Q Consensus 129 ~~~~ 132 (254)
++.+
T Consensus 334 G~~l 337 (668)
T 1kv9_A 334 GKLI 337 (668)
T ss_dssp CCEE
T ss_pred CCEe
Confidence 7765
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.67 E-value=0.21 Score=46.99 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=68.7
Q ss_pred cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC---CCCEEEEEeC------C-cEEEEEecCCCc
Q psy12788 16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP---SGQAVVVGSY------D-NIKLFAWSPSKS 84 (254)
Q Consensus 16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP---dg~~la~gs~------d-~i~l~d~~~~~~ 84 (254)
..+.|+.++.|+.+..+| .+|+.+..+..... .....+ .-+| ++ .+.++.. + .+..+|..+.+.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-~~~~~~---~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP-AKPYSI---TGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCT-TSSCBC---CSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCC-CCccee---cCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 345788888999999999 89998877653110 001111 1122 34 4444432 3 377888777777
Q ss_pred ceeecCceecCC--------------------------CCcEeEEEEecCCCeEEEeecCCc------------------
Q psy12788 85 VWEEQPNKTIPN--------------------------LYTISALSWKRDGSRIACGGLCGS------------------ 120 (254)
Q Consensus 85 ~~~~~~~~~~~~--------------------------~~~i~~l~~spdG~~la~g~~dg~------------------ 120 (254)
.|........+. ......+++.|++.++..++.++.
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 775421000000 011235789999899988887763
Q ss_pred -EEEEeeeeeeeEee
Q psy12788 121 -VELFESVLKRTIWK 134 (254)
Q Consensus 121 -v~iwd~~~~~~~~~ 134 (254)
|.-+|..+++.++.
T Consensus 271 ~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 271 SILAIRPDTGKLAWH 285 (668)
T ss_dssp EEEEECTTTCCEEEE
T ss_pred eEEEEcCCCCceeeE
Confidence 88888888776653
No 253
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.59 E-value=0.25 Score=41.89 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred CCCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCccee
Q psy12788 8 VPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWE 87 (254)
Q Consensus 8 ~~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~ 87 (254)
..+.+++++++.+..++.++.|..-+-.|+.-+.+.. .. .++..+..+++.+++..++++....+ |.-......|+
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~-~~-~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~ 155 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL-DP-KLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQ 155 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCC-CT-TCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECcc-cc-CCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCE
Confidence 3577888887666666777755443223443332211 11 23456788888888888877653333 33223455686
Q ss_pred ecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788 88 EQPNKTIPNLYTISALSWKRDGSRIACGGLC 118 (254)
Q Consensus 88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~~d 118 (254)
.. ..+....+.++++.|+|++++++...
T Consensus 156 ~~---~~~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 156 AL---VQEAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp EE---ECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred Ee---ecCCCcceEEEEEcCCCcEEEEECCC
Confidence 42 22334578999999999988876543
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.53 E-value=0.27 Score=40.66 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=78.2
Q ss_pred ccCCCCCEEEEecC--CeEEE-EeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788 4 VQHPVPPYALSWPA--GYILA-AGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW 79 (254)
Q Consensus 4 ~~h~~~v~~l~w~~--~~l~s-~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~ 79 (254)
.+-...+..++|+| +.|.+ .-.++.|...|.+|+.++.+... +. ...-.+++.++|.++++.-.+ ++.++++
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~---g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD---FV-KDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS---SC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC---CC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34445789999987 34554 55577788889779988887532 22 357789999999865553233 4667777
Q ss_pred cCCCcceeecCce----ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788 80 SPSKSVWEEQPNK----TIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 127 (254)
Q Consensus 80 ~~~~~~~~~~~~~----~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~ 127 (254)
......+...... ..+.......|+|+|+++.|.++.......+|...
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 6544322110010 11223457899999999988888887777777653
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.51 E-value=0.18 Score=46.60 Aligned_cols=113 Identities=13% Similarity=0.031 Sum_probs=66.0
Q ss_pred CeEEEEeC------CCcEEEEe-CCCCEEEEeeecCCCCC------C-----------------------------CCEE
Q psy12788 18 GYILAAGS------DRIVTIYE-SDGRVHRIFDYTAPHYK------E-----------------------------REFT 55 (254)
Q Consensus 18 ~~l~s~s~------D~~i~vWd-~~g~~~~~~~~~~~~~~------~-----------------------------~~v~ 55 (254)
+.++.++. |+.|+.+| .+|+.+..+.... .. + ....
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~--~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~ 238 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG--SDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWG 238 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS--CHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCS
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCC--CccccccCcccccccccccccccccccCcccceecCCCCeee
Confidence 45666554 78999999 7899887765211 00 0 0012
Q ss_pred EEEECCCCCEEEEEeC------------C-----cEEEEEecCCCcceeecCcee-c----CCCCcEeEEEEecCCC---
Q psy12788 56 VACSSPSGQAVVVGSY------------D-----NIKLFAWSPSKSVWEEQPNKT-I----PNLYTISALSWKRDGS--- 110 (254)
Q Consensus 56 ~~a~sPdg~~la~gs~------------d-----~i~l~d~~~~~~~~~~~~~~~-~----~~~~~i~~l~~spdG~--- 110 (254)
.++++|+..++..+.. | .+..+|..+.+..|....... . ....++ -+.-.+||+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence 3567776666655542 1 266777666667776421100 0 011222 233446885
Q ss_pred eEEEeecCCcEEEEeeeeeeeEe
Q psy12788 111 RIACGGLCGSVELFESVLKRTIW 133 (254)
Q Consensus 111 ~la~g~~dg~v~iwd~~~~~~~~ 133 (254)
.++.++.+|.+.++|..+++.++
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEe
Confidence 67788999999999987776554
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.40 E-value=0.49 Score=45.08 Aligned_cols=167 Identities=7% Similarity=-0.003 Sum_probs=99.4
Q ss_pred CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecC--CCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCC
Q psy12788 8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTA--PHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSK 83 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~--~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~ 83 (254)
..|.++..+++ .|-.|+.++-|..|+........+.... ..-....|.++..+++|.+.+ |+.+ ++..++.. .
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~--~ 386 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPI--T 386 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTT--T
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCC--C
Confidence 45778877764 6777888778999984332222222110 000234699999999998775 5655 68777743 2
Q ss_pred cceeecCcee-----cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788 84 SVWEEQPNKT-----IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG 158 (254)
Q Consensus 84 ~~~~~~~~~~-----~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (254)
..+....... .-....|.++...++|+.|.+|+.++.+..+|..+++... +....+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~----------------~~~~~~--- 447 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN----------------FNQRNS--- 447 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE----------------ECTTTS---
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE----------------eecCCC---
Confidence 2222110000 0013469999999999856678887888888865443221 000000
Q ss_pred eeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceee
Q psy12788 159 RGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSE 203 (254)
Q Consensus 159 ~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~ 203 (254)
. .....|.++...+++.+.+++. +.+.++|..+++...
T Consensus 448 -~-----l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 448 -Q-----LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTT 485 (795)
T ss_dssp -C-----CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred -C-----cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence 0 1234577777776777777776 678888887776543
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.37 E-value=0.054 Score=50.28 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=85.2
Q ss_pred CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc----------------EEEEEecCC------
Q psy12788 26 DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN----------------IKLFAWSPS------ 82 (254)
Q Consensus 26 D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~----------------i~l~d~~~~------ 82 (254)
++.+-+.| .+.+...++... + ....++++|||+++.+.+.+. +.+.|+...
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vg---g---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVS---G---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEES---S---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred CceEEEEECCCCeEEEEEEeC---C---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 45688889 666666665421 2 234578999999998887553 444443210
Q ss_pred -Ccce-------eecC------ceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeE
Q psy12788 83 -KSVW-------EEQP------NKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQV 147 (254)
Q Consensus 83 -~~~~-------~~~~------~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 147 (254)
+..+ .... ...++-......+.+||||+++.+++ .+.+|.++|+...+...+++. .+.
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l-----~~~-- 320 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-----DPR-- 320 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----CGG--
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc-----Ccc--
Confidence 0000 0000 00111112456799999999877766 678899999864321111110 000
Q ss_pred EEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788 148 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 148 ~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~ 198 (254)
..+......|....-++|++++. |++..-|+++.+||+..
T Consensus 321 -----------~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 321 -----------SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -----------GGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -----------cceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 11122223456678889999885 33455588999999987
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.26 E-value=0.13 Score=47.82 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=66.3
Q ss_pred CeEEEEe------CCCcEEEEe-CCCCEEEEeeecCCCCCC-----------------------------------CCEE
Q psy12788 18 GYILAAG------SDRIVTIYE-SDGRVHRIFDYTAPHYKE-----------------------------------REFT 55 (254)
Q Consensus 18 ~~l~s~s------~D~~i~vWd-~~g~~~~~~~~~~~~~~~-----------------------------------~~v~ 55 (254)
+.++.++ .++.|+.+| .+|+++-.+.... ... ....
T Consensus 167 g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~--~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~ 244 (599)
T 1w6s_A 167 DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG--PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWG 244 (599)
T ss_dssp TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS--CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCS
T ss_pred CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC--CccccccccccccccccccccccccccCCCcceecCCCcccc
Confidence 4555554 378999999 8899987765221 000 0011
Q ss_pred EEEECCCCCEEEEEeCC-----------------cEEEEEecCCCcceeecCceecCCC--------CcEeEEEEe-cCC
Q psy12788 56 VACSSPSGQAVVVGSYD-----------------NIKLFAWSPSKSVWEEQPNKTIPNL--------YTISALSWK-RDG 109 (254)
Q Consensus 56 ~~a~sPdg~~la~gs~d-----------------~i~l~d~~~~~~~~~~~~~~~~~~~--------~~i~~l~~s-pdG 109 (254)
..+++|+..+|..+..+ .+..+|..+.+..|.... .++. .++. +... .||
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~---~~~d~wd~d~~~~p~l-~d~~~~~G 320 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK---TPHDEWDYAGVNVMML-SEQKDKDG 320 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES---STTCSSCCCCCCCCEE-EEEECTTS
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec---CCCccccccCCCccEE-EeccccCC
Confidence 45677777776665433 466777666667775421 1111 1221 3333 678
Q ss_pred ---CeEEEeecCCcEEEEeeeeeeeEe
Q psy12788 110 ---SRIACGGLCGSVELFESVLKRTIW 133 (254)
Q Consensus 110 ---~~la~g~~dg~v~iwd~~~~~~~~ 133 (254)
+.++.++.+|.+.++|..+++.++
T Consensus 321 ~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 321 KARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp CEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cEEEEEEEECCCcEEEEEECCCCCEee
Confidence 567888899999999987776654
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.23 E-value=0.63 Score=44.32 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=93.3
Q ss_pred CCCEEEEecC-Ce-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCc
Q psy12788 8 VPPYALSWPA-GY-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS 84 (254)
Q Consensus 8 ~~v~~l~w~~-~~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~ 84 (254)
..|.++..++ .. |..|+.++-+..+| .+++ ...+...........|.++..+++|.+.+.. .+++.+++.. ..
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~--~~ 481 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSALVRFNPE--QR 481 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSCEEEEETT--TT
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCceeEEeCC--CC
Confidence 4577887765 45 88888877899999 4454 3333211000123579999999999876544 4777788743 33
Q ss_pred ceeecCce---ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeE
Q psy12788 85 VWEEQPNK---TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGV 161 (254)
Q Consensus 85 ~~~~~~~~---~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (254)
.+...... .......|.++...++|++.+.. . +.+..||...++.. +... ....
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~--------~~~~-------~~~~------ 538 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDIQ--------KASI-------LPVS------ 538 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEEE--------ECCC-------SCSC------
T ss_pred eEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeEE--------EecC-------CCCC------
Confidence 33321110 00112579999999999876644 4 56778886433320 0000 0000
Q ss_pred EEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788 162 ILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL 201 (254)
Q Consensus 162 ~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~ 201 (254)
......|.+|....++.+.+++.. .+..+|..+++.
T Consensus 539 ---~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 539 ---NVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI 574 (795)
T ss_dssp ---GGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE
T ss_pred ---CCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE
Confidence 011234666666666666666554 677777666554
No 260
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.21 E-value=0.38 Score=41.39 Aligned_cols=164 Identities=11% Similarity=0.124 Sum_probs=96.2
Q ss_pred CCCEEEEecC--CeEEEEe-CCCcEEEEeCC-CCEEEEeeecCC---CCCCCCEEEEEE---CCCCCEEEEEeC------
Q psy12788 8 VPPYALSWPA--GYILAAG-SDRIVTIYESD-GRVHRIFDYTAP---HYKEREFTVACS---SPSGQAVVVGSY------ 71 (254)
Q Consensus 8 ~~v~~l~w~~--~~l~s~s-~D~~i~vWd~~-g~~~~~~~~~~~---~~~~~~v~~~a~---sPdg~~la~gs~------ 71 (254)
.-+.+.+|++ ..|..++ ..++|..||.. +.... +....- ......+..+.| .|+|+++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-EecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3467889986 4555555 68999999965 43332 221100 000124689999 799988886331
Q ss_pred -------C-cEEEEEec---CCCcceeecCceec-C--------CCCcEeEEEEecCCCeEEEeecC-CcEEEEeeeeee
Q psy12788 72 -------D-NIKLFAWS---PSKSVWEEQPNKTI-P--------NLYTISALSWKRDGSRIACGGLC-GSVELFESVLKR 130 (254)
Q Consensus 72 -------d-~i~l~d~~---~~~~~~~~~~~~~~-~--------~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~ 130 (254)
+ .+..+|.. +.+..|... .... . .......++.-++|+..++++.. +.|...+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d-L~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p---- 166 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVN-FEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA---- 166 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEE-SHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT----
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEec-CccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC----
Confidence 3 37778876 445544321 0000 0 11247899999999999999877 77644442
Q ss_pred eEeeceeEEEEecCC-eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788 131 TIWKGKFEMIYVSPS-QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR 198 (254)
Q Consensus 131 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~ 198 (254)
++ .+.+|.+..+. .....-.+.|++.|++. +++..+.+.+.-.|+.+
T Consensus 167 -------------dG~~~~~~~~~~~~--------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 -------------DGKTVSTFAWESGN--------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -------------TSCCEEEEEECCCC--------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -------------CCCEEeeeeecCCC--------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 11 12333332211 00112367899998885 45555677888889884
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.18 E-value=0.46 Score=39.74 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=66.3
Q ss_pred CCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCC-CCCEEEEEECC-CCCEEEEEeCC------------
Q psy12788 9 PPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYK-EREFTVACSSP-SGQAVVVGSYD------------ 72 (254)
Q Consensus 9 ~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~-~~~v~~~a~sP-dg~~la~gs~d------------ 72 (254)
.|..+++++ ..|..+...+.+..+|.++..+..+..... +. ......++++| +|++.++-...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD-GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEET-TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCC-CCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 578899985 467777555668888855433333321111 11 13478899999 99987764321
Q ss_pred ----cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeee
Q psy12788 73 ----NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV 127 (254)
Q Consensus 73 ----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~ 127 (254)
.-+|+.++........ ..........|+|+|||++|.++ +..+.|..|+..
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~----~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTL----LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEE----EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred ccCCCceEEEEeCCCCEEEE----eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 1234433332222111 01111235679999999976655 556889999865
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.12 E-value=0.25 Score=40.98 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=83.5
Q ss_pred EEEEEECCCCCEEEEEeCC---cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeee
Q psy12788 54 FTVACSSPSGQAVVVGSYD---NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLK 129 (254)
Q Consensus 54 v~~~a~sPdg~~la~gs~d---~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~ 129 (254)
...+.|+ ++.++.+.+.+ .++.+|..+.+-.- ...-..........++|..|...+ .++.+.+||..+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~------~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ------QIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE------EEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE------EEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence 4789999 67766666543 48888865433211 111122344444555666666555 4677777776554
Q ss_pred eeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee-eEeCC
Q psy12788 130 RTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS-EVLWP 207 (254)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~-~~~~~ 207 (254)
+.+..-++ +.+=..++ +++ ++++...+++|.+.|..+.++. .+.-.
T Consensus 118 ~~~~ti~~------------------------------~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 118 RQVRSFNY------------------------------DGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp CEEEEEEC------------------------------SSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred cEEEEEEC------------------------------CCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 43321100 01101222 233 3444444667888898887643 22211
Q ss_pred CCCCc------eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788 208 DSGRN------EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIP 248 (254)
Q Consensus 208 ~~~g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 248 (254)
..|+ +.-..++...+-.|...++.+|+....++++++.++
T Consensus 166 -~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 166 -AHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp -ETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred -cCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 1111 222234445555566677888888888888888875
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.07 E-value=1 Score=42.73 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=108.2
Q ss_pred CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeec-----CCCCCCCCEEEEEECCCCCEEEEEe-CCcEEEEEec
Q psy12788 8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYT-----APHYKEREFTVACSSPSGQAVVVGS-YDNIKLFAWS 80 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~-----~~~~~~~~v~~~a~sPdg~~la~gs-~d~i~l~d~~ 80 (254)
..|.++..+++ .|-.|+.++-|..++........+.+. ...-....|.+++.+++|.+.+ |+ .+++..++..
T Consensus 313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI-GTDGGGINVFENG 391 (781)
T ss_dssp SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEE-EEBSSCEEEEETT
T ss_pred CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEE-EeCCCcEEEEECC
Confidence 45777777763 577777777788898443333333211 0001235699999999998764 55 4467777732
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------ceeEEEEecC--------
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------GKFEMIYVSP-------- 144 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------~~~~~~~~~~-------- 144 (254)
...+.............|.++...++|.+.+ |+.++.+..+|..+++...- ..+.+..-.+
T Consensus 392 --~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~ 468 (781)
T 3v9f_A 392 --KRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH 468 (781)
T ss_dssp --EEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET
T ss_pred --CCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC
Confidence 2222110000011235799999988887665 67767788888755443211 0111111111
Q ss_pred CeEEEEeCCCCCceeeEEEEecC-----CCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788 145 SQVLVKPLSGESKGRGVILKSQY-----GYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~l~s~~-----~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
..+..++..++. ...+.... ...|.+|....++.+.+++..+.+..+|..++++..+
T Consensus 469 ~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 469 AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF 530 (781)
T ss_dssp TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence 344555555542 11111111 3468888888888899988877888899887765443
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.02 E-value=0.47 Score=38.91 Aligned_cols=159 Identities=6% Similarity=-0.048 Sum_probs=85.8
Q ss_pred CCEEEEEECCCCCEEEEEeCC---cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeee
Q psy12788 52 REFTVACSSPSGQAVVVGSYD---NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV 127 (254)
Q Consensus 52 ~~v~~~a~sPdg~~la~gs~d---~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~ 127 (254)
.-...+.|++ +.++.+.+.+ .++.+|..+.+-. ....-..........++|..|...+ .++.+.+||..
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~------~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL------QRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE------EEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE------EEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 3467899997 6666665553 4888886543321 1111122233344444555555443 56778788865
Q ss_pred eeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee-eEeC
Q psy12788 128 LKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS-EVLW 206 (254)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~-~~~~ 206 (254)
+.+.+..-+ ++.+=..++.. .++++++..+++|.+.|..+.++. .+.-
T Consensus 94 tl~~~~ti~------------------------------~~~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 94 TLTPRARFR------------------------------YPGEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp TTEEEEEEE------------------------------CSSCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred cCcEEEEEe------------------------------CCCCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 544332110 01110122212 234555555778889999887642 2221
Q ss_pred CCCCC------ceeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecCC
Q psy12788 207 PDSGR------NEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPT 249 (254)
Q Consensus 207 ~~~~g------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 249 (254)
. ..| ++.-..++...+-+|...++.+|+....++++++.+.-
T Consensus 143 ~-~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~ 190 (243)
T 3mbr_X 143 T-AGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQA 190 (243)
T ss_dssp E-ETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred c-cCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCc
Confidence 1 111 12222345555566666778888888888888888763
No 265
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.93 E-value=0.65 Score=39.28 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCCCEEEEec-CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcE-EEEEecCCCc
Q psy12788 7 PVPPYALSWP-AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNI-KLFAWSPSKS 84 (254)
Q Consensus 7 ~~~v~~l~w~-~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i-~l~d~~~~~~ 84 (254)
+..++.+.+. ++.++.++.++.|..-+-.|+.-+.+. . +....+..++++|++.+++++....+ +-.| ....
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~---~-~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d--~gG~ 194 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALV---Q-EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE--PGQT 194 (327)
T ss_dssp SSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEE---C-SCCCCEEEEEECTTSCEEEEETTSSEEEEEC--TTCS
T ss_pred CCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEee---c-CCCcceEEEEEcCCCcEEEEECCCcEEEEeC--CCCC
Confidence 3456777764 445555556665533222354443332 1 34457899999999999988765554 2222 2245
Q ss_pred ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEE
Q psy12788 85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF 124 (254)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iw 124 (254)
.|+.. .......+..+.++|+|+.+++ +.+|.+...
T Consensus 195 tW~~~---~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s 230 (327)
T 2xbg_A 195 AWEPH---NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFS 230 (327)
T ss_dssp SCEEE---ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEE
T ss_pred ceeEC---CCCCCCccceeEECCCCCEEEE-eCCceEEEe
Confidence 67541 2233457889999999987755 457777665
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.86 E-value=0.59 Score=43.23 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred EEEECCCCCEEEEEeC--------------------C-----cEEEEEecCCCcceeecCceecCCC--------CcEeE
Q psy12788 56 VACSSPSGQAVVVGSY--------------------D-----NIKLFAWSPSKSVWEEQPNKTIPNL--------YTISA 102 (254)
Q Consensus 56 ~~a~sPdg~~la~gs~--------------------d-----~i~l~d~~~~~~~~~~~~~~~~~~~--------~~i~~ 102 (254)
..+++|+..+|.++.. | .+..+|..+.+..|.... .++. .++.
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~---~~~d~wd~~~~~~p~l- 325 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQH---TPNDAWDFSGNNELVL- 325 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEES---STTCCSCCCCCCCCEE-
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeC---CCCCcccccCCCCcEE-
Confidence 4677787777665542 2 366777667777786421 1111 1221
Q ss_pred EEEe-cCCC---eEEEeecCCcEEEEeeeeeeeEe
Q psy12788 103 LSWK-RDGS---RIACGGLCGSVELFESVLKRTIW 133 (254)
Q Consensus 103 l~~s-pdG~---~la~g~~dg~v~iwd~~~~~~~~ 133 (254)
+... .||+ .++.++.+|.+.++|..+++.++
T Consensus 326 ~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 326 FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence 2222 5785 78889999999999987766553
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.83 E-value=0.35 Score=40.27 Aligned_cols=155 Identities=11% Similarity=0.080 Sum_probs=82.8
Q ss_pred EEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeee
Q psy12788 54 FTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRT 131 (254)
Q Consensus 54 v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~ 131 (254)
...+.|+. +.++.+.+.+ .++.+|..+.+-.- .. ++. ........++|..|...+ .++.+.+||..+.+.
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~----~~-l~~--~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVW----ME-RLG--NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSE----EE-ECT--TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEe----EE-CCC--CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence 57889984 5566666655 48888865433211 11 222 233333445655555444 467777787655443
Q ss_pred EeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee-eEeCCCCC
Q psy12788 132 IWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS-EVLWPDSG 210 (254)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~-~~~~~~~~ 210 (254)
+..-. ++.+=..++..+ .+++++..+++|.+.|.++.++. .+.-. ..
T Consensus 129 ~~ti~------------------------------~~~eGwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~ 176 (268)
T 3nok_A 129 ERTTR------------------------------YSGEGWGLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVK-LR 176 (268)
T ss_dssp EEEEE------------------------------CSSCCCCEEEET-TEEEEECSSSEEEEECTTTCCEEEEEECE-ET
T ss_pred EEEEe------------------------------CCCceeEEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeC-CC
Confidence 32110 011112233222 34555555778999999987653 22221 11
Q ss_pred Cc------eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788 211 RN------EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIP 248 (254)
Q Consensus 211 g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 248 (254)
+. +.-..++...+-.|...++.+|+....++++++.++
T Consensus 177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 11 222224444445555577888888778888888775
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.55 E-value=0.18 Score=46.74 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=21.4
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEeee
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFDY 44 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~ 44 (254)
.++.++.++.++++| .+|+.+..+..
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEECCCceEEEEECCCCCEeccccc
Confidence 577888999999999 88998876653
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.45 E-value=1.8 Score=40.99 Aligned_cols=165 Identities=7% Similarity=0.023 Sum_probs=89.0
Q ss_pred CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeee-------cC---CCCCCCCEEEEEECCCCCEEEEEe-CCcEE
Q psy12788 8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDY-------TA---PHYKEREFTVACSSPSGQAVVVGS-YDNIK 75 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~-------~~---~~~~~~~v~~~a~sPdg~~la~gs-~d~i~ 75 (254)
..|.++.-+++ .|..|+..+-+.++|........+.. .. ..-....|.++..+++|.+.+ |+ .+++.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-gt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-GTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-EEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-EecCCeEE
Confidence 45777777653 56677765668888844333322211 00 001235799999999998765 55 44687
Q ss_pred EEEecCCCcceeecCc------eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEE
Q psy12788 76 LFAWSPSKSVWEEQPN------KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV 149 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~------~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v 149 (254)
.++... ..+..... ...-....|.++...++|++. .|+.++.+..||...++... | ..+
T Consensus 337 ~~~~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~---~----~~~----- 401 (781)
T 3v9f_A 337 FISNAP--PTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY---N----KEN----- 401 (781)
T ss_dssp EECSSC--CSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC---C------------
T ss_pred EeCCCC--CcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE---c----cCC-----
Confidence 777432 22211000 000012469999998888755 56767778888865433211 0 000
Q ss_pred EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788 150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
. +.....|.++....++.+.++..++.+..+|..++++.
T Consensus 402 -----~---------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 402 -----R---------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp ----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE
T ss_pred -----C---------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE
Confidence 0 01123456666655566666666566666666665543
No 270
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.29 E-value=0.17 Score=43.56 Aligned_cols=116 Identities=8% Similarity=0.054 Sum_probs=74.0
Q ss_pred CCEEEEe---cCC-eEEEEeC--------------CCcEEEEe-C---CCCEEEEeeecC--CCC-------CCCCEEEE
Q psy12788 9 PPYALSW---PAG-YILAAGS--------------DRIVTIYE-S---DGRVHRIFDYTA--PHY-------KEREFTVA 57 (254)
Q Consensus 9 ~v~~l~w---~~~-~l~s~s~--------------D~~i~vWd-~---~g~~~~~~~~~~--~~~-------~~~~v~~~ 57 (254)
.+..|.| +++ .|+.+.. +..+..+| . +|+.+...+... + + .......+
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD-EFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH-HHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccc-cccccccccccCCcee
Confidence 3589999 563 4444332 57788899 5 477665443210 0 0 11248899
Q ss_pred EECCCCCEEEEEeCC-cEEEEEecCCCcc---eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788 58 CSSPSGQAVVVGSYD-NIKLFAWSPSKSV---WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV 127 (254)
Q Consensus 58 a~sPdg~~la~gs~d-~i~l~d~~~~~~~---~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~ 127 (254)
+..|+|+..+++++. .. ||.++..... |... ..........+.|+++|||+.|++....|.+.-+|+.
T Consensus 143 avD~~GnaYVt~s~~~~~-I~rV~pdG~~~~~~~~~-~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPA-IARVSADGKTVSTFAWE-SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECTTSCEEEEEEESSCE-EEEECTTSCCEEEEEEC-CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EECCCCCEEEeCCCCCCe-EEEEeCCCCEEeeeeec-CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 999999999998877 53 6666554331 2110 0001112347789999999998888779999999864
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.27 E-value=0.1 Score=48.15 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=20.1
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEee
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFD 43 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~ 43 (254)
.++.++.++.+.+.| .+|+.+..+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeec
Confidence 366788899999999 7899887664
No 272
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.09 E-value=0.25 Score=42.64 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=59.4
Q ss_pred CCCEEEEecCC-eEEEEeCCCcEEEEeCCCC-EEEEeeecCCCCCCCCEEEEEECCC----CCEEEEEeC--------Cc
Q psy12788 8 VPPYALSWPAG-YILAAGSDRIVTIYESDGR-VHRIFDYTAPHYKEREFTVACSSPS----GQAVVVGSY--------DN 73 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~-~~~~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs~--------d~ 73 (254)
..+..++|.|+ .|+.+-.++.|++++.+|+ .+..+. ... ........++|+|+ |.+.++-+. ++
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~-v~~-~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFD-VAN-VGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECC-CCC-STTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccc-eee-cCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45788999875 5666777799999987775 222221 111 12346889999997 555554432 23
Q ss_pred EEEEEecCCCcceee-cCc-eecC--CCCcEeEEEEecCCCeEEEee
Q psy12788 74 IKLFAWSPSKSVWEE-QPN-KTIP--NLYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 74 i~l~d~~~~~~~~~~-~~~-~~~~--~~~~i~~l~~spdG~~la~g~ 116 (254)
|..++.......... ... ..++ .......|+|.|||+++++-+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 444554322111110 000 0111 112356799999998777643
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.09 E-value=0.082 Score=49.51 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=64.6
Q ss_pred CeEEEEeCCC-----------cEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecC
Q psy12788 18 GYILAAGSDR-----------IVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSP 81 (254)
Q Consensus 18 ~~l~s~s~D~-----------~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~ 81 (254)
..++.||.+. .+.+|| .+++ .+..+.. .+.....++++.++|+++++|+.+ .+++||..
T Consensus 199 ~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~- 273 (656)
T 1k3i_A 199 RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS- 273 (656)
T ss_dssp EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG-
T ss_pred EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC----CCCCccccccCCCCCCEEEeCCCCCCceEEecCc-
Confidence 3566776543 578888 4443 2222211 222334567889999999999865 37788854
Q ss_pred CCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cC-----CcEEEEeeeee
Q psy12788 82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LC-----GSVELFESVLK 129 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~d-----g~v~iwd~~~~ 129 (254)
...|.... ..+....-.+++..|||++++.|+ .+ ..+.+||..++
T Consensus 274 -t~~W~~~~--~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 274 -SDSWIPGP--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp -GTEEEECC--CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred -CCceeECC--CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 56786532 122111223566678999999999 34 56899997543
No 274
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.23 E-value=3.1 Score=37.71 Aligned_cols=118 Identities=6% Similarity=0.006 Sum_probs=64.1
Q ss_pred CCEEEEecC---CeEEEEeC-CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEE-------CCCCCEEEEEeCC-----
Q psy12788 9 PPYALSWPA---GYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACS-------SPSGQAVVVGSYD----- 72 (254)
Q Consensus 9 ~v~~l~w~~---~~l~s~s~-D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~-------sPdg~~la~gs~d----- 72 (254)
.+..|+++| +.|..+-. .+.|++.|..++.+.++- ............++| +++|++|.++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 477899997 24554443 356888896665565552 111012235889999 9999955554432
Q ss_pred -cEEEEEecCCC-cceeecC-ceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeee
Q psy12788 73 -NIKLFAWSPSK-SVWEEQP-NKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESV 127 (254)
Q Consensus 73 -~i~l~d~~~~~-~~~~~~~-~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~ 127 (254)
...++-+.... ..+.... ...+..-.....++.+|++ .++++--.++.|..+|..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 12233322111 1221000 0111111234678999954 545555567789999976
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.20 E-value=0.57 Score=43.71 Aligned_cols=74 Identities=22% Similarity=0.379 Sum_probs=47.8
Q ss_pred EEEECC-CCCEEEEEeCCc----------EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEE
Q psy12788 56 VACSSP-SGQAVVVGSYDN----------IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVEL 123 (254)
Q Consensus 56 ~~a~sP-dg~~la~gs~d~----------i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~i 123 (254)
.+++.| +|++++.|+.+. ..++-++.....|........+......++++.+||++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567778 899999987431 13455556677776421111122223446788999999999994 457888
Q ss_pred Eeeeee
Q psy12788 124 FESVLK 129 (254)
Q Consensus 124 wd~~~~ 129 (254)
||..++
T Consensus 270 yd~~t~ 275 (656)
T 1k3i_A 270 YDSSSD 275 (656)
T ss_dssp EEGGGT
T ss_pred ecCcCC
Confidence 887654
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.16 E-value=2.1 Score=35.46 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCc--EEEEee
Q psy12788 52 REFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS--VELFES 126 (254)
Q Consensus 52 ~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~--v~iwd~ 126 (254)
.....++|+|+|+++++...+ +|..+| ..... . ........+..+++.|||+++++...... |..+|.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d--~~g~~-~----~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSIT--PDGNQ-Q----IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEEC--TTCCE-E----EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEEC--CCCce-E----EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 457789999999977765444 355555 32221 1 11122346889999999997665443333 444553
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.08 E-value=2.4 Score=35.80 Aligned_cols=109 Identities=9% Similarity=0.039 Sum_probs=59.8
Q ss_pred CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC--C-cEEEEEecCC
Q psy12788 9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY--D-NIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~--d-~i~l~d~~~~ 82 (254)
.+..+++++ . ..++-...+.|.+.+.+|.....+. . ........++++|.+..|..... . +|...+.+
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-- 153 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-W---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-- 153 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-e---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--
Confidence 345565553 3 3445455678888887775444432 1 22345789999997555444442 2 35454432
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~ 126 (254)
..... ..........+.|+|+|++..|..+.. .+.|..+|.
T Consensus 154 G~~~~---~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 154 GSSRF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp SCSCE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCeE---EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 11100 000112345689999998777766654 455666654
No 278
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.88 E-value=0.39 Score=44.64 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.4
Q ss_pred eEEEEeCCCcEEEEe-CCCCEEEEee
Q psy12788 19 YILAAGSDRIVTIYE-SDGRVHRIFD 43 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~~~~~~~ 43 (254)
.++.++.++.+.+.| .+|+.+....
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCcEEEEEECCCCCEeeccc
Confidence 466788999999999 7899886654
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.88 E-value=3.2 Score=36.64 Aligned_cols=114 Identities=8% Similarity=-0.017 Sum_probs=61.6
Q ss_pred CCEEEEecC-C-eEEEE-eCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEEecCC
Q psy12788 9 PPYALSWPA-G-YILAA-GSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~~-~-~l~s~-s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d~~~~ 82 (254)
.+..+++++ + .|..+ ..++.|+.+|. +|.....+. .. +....-..++|+|+|+.|-++.. . .|+.++++..
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~--~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MM--DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-EC--SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-cc--CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 355667766 2 44444 35667888885 476533331 11 12223457999999995545443 3 4777776532
Q ss_pred Ccceeec-Ccee-------------cCCCCcEeEEEE---------ecCCCeEEEeecCCcEEEEe
Q psy12788 83 KSVWEEQ-PNKT-------------IPNLYTISALSW---------KRDGSRIACGGLCGSVELFE 125 (254)
Q Consensus 83 ~~~~~~~-~~~~-------------~~~~~~i~~l~~---------spdG~~la~g~~dg~v~iwd 125 (254)
....... .... .........+++ .++|.++++-...+.|+.++
T Consensus 306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 2211000 0000 001124567888 67777776666667777776
No 280
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.80 E-value=0.4 Score=45.41 Aligned_cols=156 Identities=9% Similarity=-0.011 Sum_probs=79.5
Q ss_pred CEEEEec--CC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeC--CcEEEEEecCCC
Q psy12788 10 PYALSWP--AG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSY--DNIKLFAWSPSK 83 (254)
Q Consensus 10 v~~l~w~--~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~--d~i~l~d~~~~~ 83 (254)
+..|+++ .. ++++-...+.|.+.+.+|.....+. . ........++++|.+.. +.+-.. .+|..++.+...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-R---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-C---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-e---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 4556655 33 3444455678999997776554442 1 11234568899996544 443322 235444432111
Q ss_pred cceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788 84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI 162 (254)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (254)
.. ..........+.|+|+|++.+|..+. ..+.|..+|+.... .+.+
T Consensus 531 ~~-----~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~----------------------------~~~~ 577 (699)
T 1n7d_A 531 IY-----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----------------------------RKTI 577 (699)
T ss_dssp CC-----EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC----------------------------CEEE
T ss_pred ee-----EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc----------------------------eEEE
Confidence 10 00011223457899999877666555 44567666642100 0111
Q ss_pred EEe-cCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788 163 LKS-QYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 163 l~s-~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
+.. ........|++..+..|++....+.|..+|..+|+..
T Consensus 578 ~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 578 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence 100 0011234556665444555555678888888777643
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.69 E-value=3.4 Score=36.36 Aligned_cols=111 Identities=7% Similarity=-0.016 Sum_probs=60.5
Q ss_pred CCCCEEEEecCC--eEEEEeC-CC----cEEEEeCCCCEE--EEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCC-cEE
Q psy12788 7 PVPPYALSWPAG--YILAAGS-DR----IVTIYESDGRVH--RIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYD-NIK 75 (254)
Q Consensus 7 ~~~v~~l~w~~~--~l~s~s~-D~----~i~vWd~~g~~~--~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d-~i~ 75 (254)
...+..++|+++ .|+.+.. ++ .+.+.+.+|... +.+. .. . ....++++| +|.++++-..+ ++.
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~--~---~p~giavdp~~g~lyv~d~~~~~V~ 251 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KG--Q---NCNGAETHPINGELYFNSWNAGQVF 251 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-EC--S---SCCCEEECTTTCCEEEEETTTTEEE
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cC--C---CceEEEEeCCCCEEEEEECCCCEEE
Confidence 345788999873 3555443 11 233344555322 2332 11 2 345788999 77766654333 466
Q ss_pred EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeee
Q psy12788 76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV 127 (254)
Q Consensus 76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~ 127 (254)
.++.. ...... ............|+|+|+|++|..+ ...+.|..++..
T Consensus 252 ~~~~~--~~~~~~--~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 252 RYDFT--TQETTP--LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEETT--TTEEEE--EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEECC--CCcEEE--EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 66643 221111 1112222346789999999955554 456788887753
No 282
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.38 E-value=2 Score=36.77 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=57.5
Q ss_pred CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeec-CCCCCCCCEEEEEECCC----CCEEEEEeC------CcEE
Q psy12788 8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYT-APHYKEREFTVACSSPS----GQAVVVGSY------DNIK 75 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~-~~~~~~~~v~~~a~sPd----g~~la~gs~------d~i~ 75 (254)
..|..++|.|+ .|+.+..++.|++++ +|+........ .. ........++|+|+ +.+.++-.. ++|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~-~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYH-RGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCC-STTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEee-cCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 45789999885 466666778999998 55422111111 11 12346889999998 444444332 3455
Q ss_pred EEEecCCCcceee-cC-ceecC----CCCcEeEEEEecCCCeEEEe
Q psy12788 76 LFAWSPSKSVWEE-QP-NKTIP----NLYTISALSWKRDGSRIACG 115 (254)
Q Consensus 76 l~d~~~~~~~~~~-~~-~~~~~----~~~~i~~l~~spdG~~la~g 115 (254)
.++.... .... .. ...++ .......|+|.|||.+.++-
T Consensus 109 r~~~~~~--~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 109 RLRHLGE--RGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEECSS--CEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEeCCC--CcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 5554421 1110 00 01122 11234689999999776654
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.35 E-value=3.1 Score=34.79 Aligned_cols=109 Identities=10% Similarity=0.000 Sum_probs=61.9
Q ss_pred CCEEEEecC--CeE-EEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---cEEEEEecCC
Q psy12788 9 PPYALSWPA--GYI-LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---NIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~i~l~d~~~~ 82 (254)
.|..+++++ +.| ++-...+.|.+.+.+|+....+-. ........++++|.+..|-..... +|...+.+
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-- 151 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-- 151 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--
Confidence 456666653 344 454567789999977765544421 122457899999965544333332 35445432
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~ 126 (254)
..... ..........+.|+|+|++..|..+. ..+.|..+|.
T Consensus 152 G~~~~---~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~ 193 (316)
T 1ijq_A 152 GVDIY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (316)
T ss_dssp SCCEE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCeE---EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence 21111 00011234578999999887776665 3456766664
No 284
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.29 E-value=3.2 Score=35.55 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=34.2
Q ss_pred CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCcee----cCCCCcEeEEEEecC---CCeEEEe
Q psy12788 52 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRD---GSRIACG 115 (254)
Q Consensus 52 ~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~spd---G~~la~g 115 (254)
.....++|.|||+++++-...+|++++ ... . +. ... .........|+|+|| +.+|.++
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d--~~G-~-~~--~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS--PSG-K-KL--VASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC--SSC-E-EE--EEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe--CCC-c-eE--eeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 357899999999977664443566665 212 1 11 111 122356889999998 4444443
No 285
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.22 E-value=3.8 Score=35.42 Aligned_cols=110 Identities=8% Similarity=-0.102 Sum_probs=61.3
Q ss_pred CCCEEEEecC--CeE-EEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCC-cEEEEEecCC
Q psy12788 8 VPPYALSWPA--GYI-LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYD-NIKLFAWSPS 82 (254)
Q Consensus 8 ~~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d-~i~l~d~~~~ 82 (254)
..+..++|++ +.| .+-...+.|..++.+|.....+. . ........++++|.+..| .+-... +|.+.+.+..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~---~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-S---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-C---SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-e---CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 3577899985 344 44455678888886665443332 1 111245678999865544 443333 4666554321
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-C-CcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-C-GSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-d-g~v~iwd~ 126 (254)
... ............|++.|++.+|..... . +.|..++.
T Consensus 192 ~~~-----~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 192 HRK-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp SCE-----EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceE-----EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 111 111122346789999997776665553 3 56666664
No 286
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.11 E-value=0.92 Score=40.44 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=52.7
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceee----c----CceecC-----CCCcEeEEEEecC---CCeEEEee
Q psy12788 53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEE----Q----PNKTIP-----NLYTISALSWKRD---GSRIACGG 116 (254)
Q Consensus 53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~----~----~~~~~~-----~~~~i~~l~~spd---G~~la~g~ 116 (254)
.|..+..||+|++||.-+...+.|..+-.....-.. . ....+. ...+|..+-|+|- |..|++=.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 678899999999999988778888776421110000 0 001111 2357999999996 55799999
Q ss_pred cCCcEEEEeee
Q psy12788 117 LCGSVELFESV 127 (254)
Q Consensus 117 ~dg~v~iwd~~ 127 (254)
.|+.|++||+.
T Consensus 147 sD~~Ir~yDl~ 157 (452)
T 3pbp_A 147 EDDTITMFDIL 157 (452)
T ss_dssp TTSCEEEEETT
T ss_pred cCCEEEEEEcc
Confidence 99999999975
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=92.95 E-value=3.3 Score=33.99 Aligned_cols=74 Identities=3% Similarity=-0.021 Sum_probs=45.5
Q ss_pred CCCCCEEEEEECCCCCEE-EEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788 49 YKEREFTVACSSPSGQAV-VVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES 126 (254)
Q Consensus 49 ~~~~~v~~~a~sPdg~~l-a~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~ 126 (254)
+-...+..++|+|+++.| |+...+. +|+-++.....+.. ..+........|++.++|.++++.-.++.+.++++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~-~I~~ld~~g~v~~~---i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPA-AIVEMTTNGDLIRT---IPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTE-EEEEEETTCCEEEE---EECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCC-eEEEEeCCCCEEEE---EecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 555689999999987654 4455443 24444343333221 12233345778899999987666556677777765
No 288
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.90 E-value=4 Score=34.81 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=34.7
Q ss_pred CEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeec-C-ceecCCCCcEeEEEEecC---CCeEEEee
Q psy12788 53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQ-P-NKTIPNLYTISALSWKRD---GSRIACGG 116 (254)
Q Consensus 53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~-~-~~~~~~~~~i~~l~~spd---G~~la~g~ 116 (254)
....++|.|||+++++-...+|++++ . ...+.. . ............|+|+|| +.+|.++.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~---g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-E---GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-T---TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-C---CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 46799999999977664333476666 2 111110 0 001122456889999999 54444443
No 289
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.88 E-value=4.2 Score=35.07 Aligned_cols=104 Identities=9% Similarity=0.034 Sum_probs=60.2
Q ss_pred CCEEEEecCC-eEEEEe-------------CCCcEEEEeCC---CCEEEEeeecC---CCCCCCCEEEEEECC--CCC--
Q psy12788 9 PPYALSWPAG-YILAAG-------------SDRIVTIYESD---GRVHRIFDYTA---PHYKEREFTVACSSP--SGQ-- 64 (254)
Q Consensus 9 ~v~~l~w~~~-~l~s~s-------------~D~~i~vWd~~---g~~~~~~~~~~---~~~~~~~v~~~a~sP--dg~-- 64 (254)
.+..++..++ .+.+++ .++.|.++|.+ ++ .+.+...- + ........+.+.+ +|.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~-~~~l~~~g~~~~-~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLD-ISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC-EEECEEECSSCC-GGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc-eEEEEccCCCCC-cCceeeeeeEEEECCCCcEE
Confidence 4566777664 444554 68889999943 33 33343221 1 1223566777765 464
Q ss_pred EEEEEeC--C-cEEEEEecCCCcceeecCceecCC--CCcEeEEEEecCCCeEEEee
Q psy12788 65 AVVVGSY--D-NIKLFAWSPSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 65 ~la~gs~--d-~i~l~d~~~~~~~~~~~~~~~~~~--~~~i~~l~~spdG~~la~g~ 116 (254)
++++... + .+.+|+++........ .....+ ....+++...|+|++.++..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~--~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLH--LKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEE--EEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEE--EeccccCCCCCCceEEEeCCCCEEecCC
Confidence 4555333 3 4789988765544332 222332 34789999999999887654
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=92.69 E-value=4.7 Score=35.08 Aligned_cols=109 Identities=9% Similarity=-0.024 Sum_probs=61.8
Q ss_pred CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-C--CcEEEEEecCC
Q psy12788 9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-Y--DNIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~--d~i~l~d~~~~ 82 (254)
.+..++.+. + +.++-...+.|.+.+.+|.....+-. ........++++|.+..|.... . .+|...+.+..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 455566553 3 34454556788888877765544421 1224578999999655544433 2 24655554321
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~ 126 (254)
... ..........+.|+++|++..|..+.. .+.|..+|+
T Consensus 236 ~~~-----~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~ 275 (400)
T 3p5b_L 236 DIY-----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 275 (400)
T ss_dssp SCE-----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccE-----EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence 110 011122346789999998888777654 455666654
No 291
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=92.53 E-value=4.4 Score=34.44 Aligned_cols=110 Identities=8% Similarity=-0.105 Sum_probs=61.3
Q ss_pred CCCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCC-cEEEEEecCC
Q psy12788 8 VPPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYD-NIKLFAWSPS 82 (254)
Q Consensus 8 ~~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d-~i~l~d~~~~ 82 (254)
..+.+++|++ +.|. +-...+.|..++.+|.....+. . ........++++|.+..| .+-... +|.+.+.+..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~---~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-S---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-e---CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 3468889985 3444 4445677888886654333321 1 112345689999865544 443333 4777775422
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cC-CcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LC-GSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~d-g~v~iwd~ 126 (254)
... ............|++.|++.+|.... .. +.|..+++
T Consensus 149 ~~~-----~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 149 HRK-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp SCE-----EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceE-----EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 111 11112234678999999766555544 33 56766664
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=92.53 E-value=4.9 Score=34.94 Aligned_cols=110 Identities=9% Similarity=-0.159 Sum_probs=57.4
Q ss_pred CCCCEEEEecC--CeEE-EEeCCCcEEEEeCCCC----EEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEE
Q psy12788 7 PVPPYALSWPA--GYIL-AAGSDRIVTIYESDGR----VHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLF 77 (254)
Q Consensus 7 ~~~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~----~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~ 77 (254)
-..+.+++|++ +.|. +-...+.|+.++.+|. ....+. . ........+|+++.+. +..+-... +|.+.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~---~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-C---SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-e---CCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 34678889985 3444 4345677888875541 111221 1 1234578999998544 44443333 46666
Q ss_pred EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec--CCcEEEEe
Q psy12788 78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL--CGSVELFE 125 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~--dg~v~iwd 125 (254)
+.+... .. ............|++.|.+.+|..... .+.|...+
T Consensus 187 ~~~g~~--~~---~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 187 DTKGVK--RK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp CTTTCS--EE---EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred eCCCCc--eE---EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 643211 11 111123345789999997666665542 24454444
No 293
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.36 E-value=1.1 Score=36.43 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=54.2
Q ss_pred eEEEEeCCCcEEEEe-CCCC------EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCC---cceee
Q psy12788 19 YILAAGSDRIVTIYE-SDGR------VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSK---SVWEE 88 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd-~~g~------~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~---~~~~~ 88 (254)
+|++...| +++.=. +++. ...++. . +-=..++.++|+|+|.+.|+ +... ||...... ..|-.
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG--~--~gw~~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIG--K--GGWSNFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMG 77 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEE--S--SSCTTCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHH
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccC--c--cccccceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccc
Confidence 57777777 655544 3433 112221 0 00136779999999999998 4443 55544322 22211
Q ss_pred cCceecCC--CCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788 89 QPNKTIPN--LYTISALSWKRDGSRIACGGLCGSVELFE 125 (254)
Q Consensus 89 ~~~~~~~~--~~~i~~l~~spdG~~la~g~~dg~v~iwd 125 (254)
. ...+.. -....++.|.|+|.+.|+ .||.|.-++
T Consensus 78 s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 78 R-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp H-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred c-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 0 111111 112478999999999998 568775554
No 294
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=92.10 E-value=5.4 Score=34.43 Aligned_cols=105 Identities=9% Similarity=-0.089 Sum_probs=54.7
Q ss_pred EEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeec
Q psy12788 12 ALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQ 89 (254)
Q Consensus 12 ~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~ 89 (254)
+.+..+...+..+....|+..+.++.....+. .....+..++|+|.+..|-..... +|+.++.+ ....+.
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~-----~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~--g~~~~~- 152 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLL-----NNLENAIALDFHHRRELVFWSDVTLDRILRANLN--GSNVEE- 152 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEE-----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCEEE-
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEe-----cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC--CCCcEE-
Confidence 33334332233334467888885554333321 122458899999876655554433 35555543 221111
Q ss_pred CceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEee
Q psy12788 90 PNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFES 126 (254)
Q Consensus 90 ~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~ 126 (254)
...........+++.|.+..| .+-...+.|.+.+.
T Consensus 153 --~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 153 --VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp --EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred --EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 011122345678999865554 44445667777765
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.99 E-value=9 Score=36.76 Aligned_cols=100 Identities=9% Similarity=-0.132 Sum_probs=52.9
Q ss_pred CCCEEEEecC--CeE-EEEeCCCcEEEEeCCCC----EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEE
Q psy12788 8 VPPYALSWPA--GYI-LAAGSDRIVTIYESDGR----VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFA 78 (254)
Q Consensus 8 ~~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g~----~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d 78 (254)
..+.+|+|++ +.| ++-...+.|+.++.+|. ....+ .. ........||+++.+..|-.... . +|++.+
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-i~---~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-EC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE-Ee---cCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 4567788875 333 34445567777775542 11111 11 12234678999988765544443 3 477777
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~ 116 (254)
.+.... . ............|++.|.+.+|....
T Consensus 500 ldG~~~--~---~l~~~~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 500 TKGVKR--K---TLFRENGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp TTSSSE--E---EEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred CCCCeE--E---EEEeCCCCCcceEEEecCCCCEEEec
Confidence 542211 1 11112334578999999866665554
No 296
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=91.83 E-value=2.6 Score=36.42 Aligned_cols=94 Identities=10% Similarity=0.098 Sum_probs=55.0
Q ss_pred CCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------------CcEEEEEecCCCccee
Q psy12788 26 DRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------------DNIKLFAWSPSKSVWE 87 (254)
Q Consensus 26 D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------------d~i~l~d~~~~~~~~~ 87 (254)
+.+|.+|+ ..+....-+. ......-...+.+++.|+|.+.++... ..-+||-++... ..
T Consensus 138 ~s~ielf~~d~~~~~~~~~~-~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLK-TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEE-EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CE
T ss_pred CCeEEEEEEECCCCEEEEEe-ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EE
Confidence 45677776 4444332221 111012246889999999998877541 113466655421 11
Q ss_pred ecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEee
Q psy12788 88 EQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFES 126 (254)
Q Consensus 88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~ 126 (254)
.........+.|+|||||+.|.++. ..+.|..||+
T Consensus 215 ----~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~ 250 (355)
T 3sre_A 215 ----VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK 250 (355)
T ss_dssp ----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred ----EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence 1112234578899999998877765 4677777775
No 297
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.66 E-value=5.2 Score=33.35 Aligned_cols=109 Identities=9% Similarity=-0.155 Sum_probs=57.1
Q ss_pred CCCEEEEecC--CeE-EEEeCCCcEEEEeCCC----CEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEEE
Q psy12788 8 VPPYALSWPA--GYI-LAAGSDRIVTIYESDG----RVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLFA 78 (254)
Q Consensus 8 ~~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g----~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~d 78 (254)
..+.+++|++ +.| .+-...+.|..++.+| .....+- . ..-.....+++++.+. +..+-..+ +|.+++
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~---~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-C---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-e---CCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 3567889985 344 4445567888888554 2222221 1 1113457899997554 44443333 477777
Q ss_pred ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC--CcEEEEe
Q psy12788 79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC--GSVELFE 125 (254)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d--g~v~iwd 125 (254)
.+..... ............++..|++.+|..+... +.|...+
T Consensus 106 ~~g~~~~-----~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 106 TKGVKRK-----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp TTSSSEE-----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCCceE-----EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 5421111 0111123467899999977666555432 3444443
No 298
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.64 E-value=5.7 Score=35.35 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCCEEEEecCC-eEEEEeCCC-cEEEEe-CCCCEEEEeeecCC--C-CCCCCEEEEEECC----CCCEEEEEeC------
Q psy12788 8 VPPYALSWPAG-YILAAGSDR-IVTIYE-SDGRVHRIFDYTAP--H-YKEREFTVACSSP----SGQAVVVGSY------ 71 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~D~-~i~vWd-~~g~~~~~~~~~~~--~-~~~~~v~~~a~sP----dg~~la~gs~------ 71 (254)
..+..++|.|+ .|+.+...+ .|++++ .+|+.......... . ..+.....++|+| ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45789999885 455555654 688887 45654322211100 0 0245678999999 4555554432
Q ss_pred -------CcEEEEEecCCCcceee-cCce-ecC--CCCcEeEEEEecCCCeEEEee
Q psy12788 72 -------DNIKLFAWSPSKSVWEE-QPNK-TIP--NLYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 72 -------d~i~l~d~~~~~~~~~~-~~~~-~~~--~~~~i~~l~~spdG~~la~g~ 116 (254)
.+|.-++++........ .... .++ .......|+|.|||++.++-+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 12333443322211110 0011 111 123578999999998776644
No 299
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.61 E-value=3.8 Score=35.24 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=56.9
Q ss_pred CCCEEEEecCC-eEEEEeC-CCcEEEEe-CCCCEEE--EeeecCCCCCCCCEEEEEECCC----CCEEEEEe---CCcEE
Q psy12788 8 VPPYALSWPAG-YILAAGS-DRIVTIYE-SDGRVHR--IFDYTAPHYKEREFTVACSSPS----GQAVVVGS---YDNIK 75 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~-D~~i~vWd-~~g~~~~--~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs---~d~i~ 75 (254)
..+..++|.|+ .|+.+.. .++|++++ .+|+... .+..... ........++|+|+ +.+.++-+ .++|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~-~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSP-SGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC-BTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceee-cCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 46789999885 4555555 88999998 4455321 1110011 22456899999995 55555422 22333
Q ss_pred EEEecCCC---cceeecC--ceecC--CCCcEeEEEEecCCCeEEEee
Q psy12788 76 LFAWSPSK---SVWEEQP--NKTIP--NLYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 76 l~d~~~~~---~~~~~~~--~~~~~--~~~~i~~l~~spdG~~la~g~ 116 (254)
-+.+.... ....... ...++ ....-..|.|.|||.+.++-+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 33333211 0110000 00111 122456799999998777643
No 300
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.12 E-value=2.7 Score=35.89 Aligned_cols=107 Identities=10% Similarity=0.018 Sum_probs=57.2
Q ss_pred CCCEEEEecCC-e-EEEEeCCCcEEEEeCCCCEEEEee-e--cCCCCCCCCEEEEEECCC----CCEEEEEeC-------
Q psy12788 8 VPPYALSWPAG-Y-ILAAGSDRIVTIYESDGRVHRIFD-Y--TAPHYKEREFTVACSSPS----GQAVVVGSY------- 71 (254)
Q Consensus 8 ~~v~~l~w~~~-~-l~s~s~D~~i~vWd~~g~~~~~~~-~--~~~~~~~~~v~~~a~sPd----g~~la~gs~------- 71 (254)
..+..++|.|+ . |+.+...+.|++++.+|.....+. . ... ........++|+|+ +.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~-~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWA-HGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCC-STTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCccccc-CCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 35788999884 4 777777899999986664321111 0 000 12345789999995 555554332
Q ss_pred -CcEEEEEecCCCcceeecC-c-eecC----CCCcEeEEEEecCCCeEEEe
Q psy12788 72 -DNIKLFAWSPSKSVWEEQP-N-KTIP----NLYTISALSWKRDGSRIACG 115 (254)
Q Consensus 72 -d~i~l~d~~~~~~~~~~~~-~-~~~~----~~~~i~~l~~spdG~~la~g 115 (254)
++|..++++.......... . ...+ ....-..|+|.|||.++++-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 1344444433221111100 0 0111 11234679999999765554
No 301
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=89.68 E-value=8.6 Score=32.58 Aligned_cols=106 Identities=8% Similarity=-0.087 Sum_probs=57.0
Q ss_pred EEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCccee
Q psy12788 11 YALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWE 87 (254)
Q Consensus 11 ~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~ 87 (254)
.+.+..++ .|+- +....|+..+.+|.....+. .....+..++|+|..+.|-..... +|+.++.+... .+
T Consensus 37 ~C~~~~~~~~ll~-~~~~~I~~i~~~g~~~~~~~-----~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~ 108 (349)
T 3v64_C 37 SCKALGPEPVLLF-ANRIDIRQVLPHRSEYTLLL-----NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VE 108 (349)
T ss_dssp CEEESSSCCEEEE-ECBSCEEEECTTSCCEEEEE-----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CE
T ss_pred cccccccCceeEe-ecccceEEEeCCCCeeEEee-----cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ce
Confidence 44444443 3333 34456888886665443332 122457899999876665554433 36555543211 11
Q ss_pred ecCceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEeee
Q psy12788 88 EQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESV 127 (254)
Q Consensus 88 ~~~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~ 127 (254)
. ...........+++.+.+..| .+-...+.|.+.+..
T Consensus 109 ~---~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 109 E---VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp E---EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred E---EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC
Confidence 1 011122345789999865544 454556778888753
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.68 E-value=3.6 Score=36.66 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=84.1
Q ss_pred CCCEEEEEeCCcEEEEEecCCCcceeecCceecCC---CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeE
Q psy12788 62 SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN---LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFE 138 (254)
Q Consensus 62 dg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~---~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~ 138 (254)
+|.-+.++-.+.+|..++.... .+. ....++ ...|..+..||+|++||..+ +..|.|-.+-.+........
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~-~Yk---~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~- 104 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDS-LYH---SLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS- 104 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCS-SCE---EEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH-
T ss_pred CCCEEEEEECCEEEEEECCCCC-cce---EEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc-
Confidence 4444444444456666654322 111 112222 22578899999999999886 55777776542211111000
Q ss_pred EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc----EEEEEECCCcEEEEeccCCc--eeeEeCCCCCCc
Q psy12788 139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND----RYLVARTPDTLLLGDLHRNL--LSEVLWPDSGRN 212 (254)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~----~~~v~~~d~~i~i~dl~~~~--~~~~~~~~~~g~ 212 (254)
..+.-+++-+.+..-+ .....+|.++-|+|-+ .+++-.+|++|++||+.... ...+. . . .
T Consensus 105 --~~~~~q~~ty~l~~~~--------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~-k-~--~ 170 (452)
T 3pbp_A 105 --IQDAFQIFHYSIDEEE--------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN-K-P--N 170 (452)
T ss_dssp --HHHTTEEEEEEGGGCC----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES-C-C--C
T ss_pred --cccccceeEEEcCCcc--------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh-c-c--c
Confidence 0011123333333110 0123579999998733 57778889999999998632 11111 0 1 1
Q ss_pred eeEEe---eCceEEEEEeCCeeEEEEee
Q psy12788 213 EKFYF---DNVTVCLVFNAGELSIIEYG 237 (254)
Q Consensus 213 ~~~~~---~~~~~~~~~~~g~~~~~~~~ 237 (254)
..|-+ ..+..++.|..|-+.|+-..
T Consensus 171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 171 NSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp SEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 22322 14678888888777776644
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.66 E-value=2.1 Score=40.47 Aligned_cols=108 Identities=8% Similarity=-0.163 Sum_probs=51.8
Q ss_pred CCEEEEecC--CeEEEE-eCCCcEEEEeCCC----CEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCC-cEEEEEe
Q psy12788 9 PPYALSWPA--GYILAA-GSDRIVTIYESDG----RVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYD-NIKLFAW 79 (254)
Q Consensus 9 ~v~~l~w~~--~~l~s~-s~D~~i~vWd~~g----~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d-~i~l~d~ 79 (254)
.+.+++|++ +.|..+ ...+.|+.++.++ .....+ .. ........+++++.+ +++++-... +|.+++.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~---i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---IS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB---CC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE---Ee-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 456778875 344433 3456777777443 111111 00 111234578888654 444432223 4777775
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC--CcEEEEe
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC--GSVELFE 125 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d--g~v~iwd 125 (254)
...... . ...........|++.|++.+|...... +.|..++
T Consensus 483 dg~~~~--~---l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 483 KGVKRK--T---LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp SSCCEE--E---ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CCCceE--E---EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 422111 0 001122345778999976666555432 4454443
No 304
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=89.45 E-value=8.6 Score=32.24 Aligned_cols=106 Identities=10% Similarity=-0.050 Sum_probs=56.0
Q ss_pred CEEEEecC--Ce-EEEEeCCCcEEEEeCCCCE--EEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEEEecCC
Q psy12788 10 PYALSWPA--GY-ILAAGSDRIVTIYESDGRV--HRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLFAWSPS 82 (254)
Q Consensus 10 v~~l~w~~--~~-l~s~s~D~~i~vWd~~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~d~~~~ 82 (254)
+.+++|++ +. ..+-...+.|..++.+|.. ...+.. .......+++++.+. ++.+-... +|.+++.+..
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-----~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-----CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-----CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 56788875 33 3444556778888855431 111111 112456889998554 44443333 4777775422
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeec--CCcEEEEe
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL--CGSVELFE 125 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~--dg~v~iwd 125 (254)
... ............+++.|.+.+|..... .+.|...+
T Consensus 112 ~~~-----~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 112 LRK-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp SCE-----EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred cEE-----EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 111 111123346789999998666665552 34444443
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=88.80 E-value=11 Score=32.54 Aligned_cols=199 Identities=12% Similarity=0.169 Sum_probs=106.5
Q ss_pred eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC----CCE--EEEEe--C---CcEEEEEecCCCccee
Q psy12788 19 YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS----GQA--VVVGS--Y---DNIKLFAWSPSKSVWE 87 (254)
Q Consensus 19 ~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd----g~~--la~gs--~---d~i~l~d~~~~~~~~~ 87 (254)
.++....++-+.+||.+|+.++.+. . ..++.+..-|+ |+. +|.++ . +++++|+++.....+.
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~-----~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYN-----T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEC-----C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEcc-----C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 4555556678999999999997763 1 34666666663 332 33332 3 3589998865454444
Q ss_pred ecCce--ec-CCCCcEeEEEE--ecC-CC-eEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788 88 EQPNK--TI-PNLYTISALSW--KRD-GS-RIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG 160 (254)
Q Consensus 88 ~~~~~--~~-~~~~~i~~l~~--spd-G~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (254)
..... .. .....+..+++ +|+ |+ ++.+...+|.+..|++... ..+....+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~-----------------------~~g~~~~~ 171 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKAD-----------------------KNGYISGK 171 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEEC-----------------------TTSCEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeC-----------------------CCCcccce
Confidence 32110 00 11145677787 775 54 6778888898888876321 00000000
Q ss_pred EEEEecCCCceeEEEEec-CcEEEEEECCCcEEEEecc-----CCceeeEeCCCC---CCceeEEe----eCceEEEEEe
Q psy12788 161 VILKSQYGYEITDVAIMG-NDRYLVARTPDTLLLGDLH-----RNLLSEVLWPDS---GRNEKFYF----DNVTVCLVFN 227 (254)
Q Consensus 161 ~~l~s~~~~~i~~i~~~~-~~~~~v~~~d~~i~i~dl~-----~~~~~~~~~~~~---~g~~~~~~----~~~~~~~~~~ 227 (254)
.+-+=..+..+..+++.+ .++++++-.+..|..+|.+ ++++... +... ...|-..+ ++....++-+
T Consensus 172 lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~-~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 172 KVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR-ADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE-BSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred EEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE-ecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 010001234566666664 3577788777666656654 2344322 2101 11122222 1123556666
Q ss_pred CCe--eEEEEee-cCeeeeeeecC
Q psy12788 228 AGE--LSIIEYG-NNEILTCVRIP 248 (254)
Q Consensus 228 ~g~--~~~~~~~-~~~~~~~~~~~ 248 (254)
.|. +.+++.. .++.+|+.++-
T Consensus 251 QG~~s~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 251 QGNSSYAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp GGGTEEEEEESSTTCCEEEEEEEC
T ss_pred CCCCEEEEEECCCCCcEEEEEEec
Confidence 554 6666664 56788888743
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=88.04 E-value=16 Score=33.73 Aligned_cols=109 Identities=9% Similarity=0.037 Sum_probs=61.0
Q ss_pred CCEEEEecC--Ce-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC--cEEEEEecCC
Q psy12788 9 PPYALSWPA--GY-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD--NIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~~--~~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d--~i~l~d~~~~ 82 (254)
.|..+|.+. +. .++-...+.|.+.+.+|...+.+.. ..-.....++++|.+. ++.+-... +|...+.+
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-- 158 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-- 158 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC--
Confidence 466777654 43 4455567789999988865544421 1223466899999744 44443222 24333432
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~ 126 (254)
..... ..........+.|++.|+++.|..+. ..+.|...|.
T Consensus 159 G~~~~---~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 159 GSSRF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp SCSCE---EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred CCceE---EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 11110 00111234578999999877766665 4566777665
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=86.31 E-value=24 Score=33.79 Aligned_cols=109 Identities=9% Similarity=0.004 Sum_probs=62.0
Q ss_pred CCEEEEec--CC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC---CcEEEEEecCC
Q psy12788 9 PPYALSWP--AG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY---DNIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~--~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~---d~i~l~d~~~~ 82 (254)
.+..||.+ .+ +.++-...+.|.+.+.+|...+++.. ........|+++|.+..|-.... .+|...+.+..
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 35556554 33 44455567788888888876655531 12245789999997544444332 23555554321
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~ 126 (254)
.. . ..........+.|++.|++.+|..+.. .+.|...|+
T Consensus 548 ~~--~---~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 548 DI--Y---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp CE--E---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ce--E---EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 11 0 111122346789999988777776654 345655554
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=86.30 E-value=21 Score=33.10 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=66.5
Q ss_pred CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEecCCC
Q psy12788 9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSK 83 (254)
Q Consensus 9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~~~~ 83 (254)
.|..+|++. + +..+-+..++|.+.+.+|+..+.+.. .......+++++| .|.++.+-.... -+|+......
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~----~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG 465 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLK----GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG 465 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEE----CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEe----CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence 466777654 4 44566667889998988887666532 2234688999999 677766643332 2455443322
Q ss_pred cceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788 84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES 126 (254)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~ 126 (254)
.... ..........+.|++.++++.|..+.. .+.|...|.
T Consensus 466 ~~~~---~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~ 506 (628)
T 4a0p_A 466 TERE---VLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL 506 (628)
T ss_dssp CSCE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCcE---EEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 1111 011112345789999999887777654 455665554
No 309
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.98 E-value=12 Score=33.43 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCEEEEecCC---eEEEEeCCCcEEEEeCCCCE----EEEeeecCCCC----CCCCEEEEEECCC----CCEEEEEeC--
Q psy12788 9 PPYALSWPAG---YILAAGSDRIVTIYESDGRV----HRIFDYTAPHY----KEREFTVACSSPS----GQAVVVGSY-- 71 (254)
Q Consensus 9 ~v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~----~~~~~~~~~~~----~~~~v~~~a~sPd----g~~la~gs~-- 71 (254)
.+..++|.|+ .|+.+-..+.|++++.+|.. +..+......+ .+.....++|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 5688999875 37777888999999855532 22221001001 1356789999997 555554331
Q ss_pred --------C-cEEE--EEecCCC-cc--e-eecCceec---CCCCcEeEEEEecCCCeEEEeec
Q psy12788 72 --------D-NIKL--FAWSPSK-SV--W-EEQPNKTI---PNLYTISALSWKRDGSRIACGGL 117 (254)
Q Consensus 72 --------d-~i~l--~d~~~~~-~~--~-~~~~~~~~---~~~~~i~~l~~spdG~~la~g~~ 117 (254)
+ ..+| |.+.... .. . ........ .....-..|+|.|||++.++-+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1244 3332210 10 0 00001111 12235688999999987665553
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=84.77 E-value=21 Score=31.65 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred CEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC-------CCCcEeEEEEecC
Q psy12788 53 EFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-------NLYTISALSWKRD 108 (254)
Q Consensus 53 ~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~-------~~~~i~~l~~spd 108 (254)
....++|.|+|+++++-...+ |++++ ........ ...+. .......|+|+||
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~--~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVN--PESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEE--CCCCcEeE--EecCCccccccCCCCceeEEEECCC
Confidence 467999999999887654333 54444 22222111 11111 2456789999995
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=83.90 E-value=20 Score=30.73 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=32.2
Q ss_pred CCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeec---CceecCCCCcEeEEEEecC
Q psy12788 52 REFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQ---PNKTIPNLYTISALSWKRD 108 (254)
Q Consensus 52 ~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~---~~~~~~~~~~i~~l~~spd 108 (254)
.....++|.|||.++++--.. +|++++-. ....... .............|+++||
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~--~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAK--TGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTT--TCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECC--CCcEeeecccCceeecCCCCceeeEeccc
Confidence 357899999999988765423 46555522 2211110 0011123457889999996
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=80.13 E-value=37 Score=31.39 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=60.6
Q ss_pred CCEEEEec--CCe-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeC--CcEEEEEecCC
Q psy12788 9 PPYALSWP--AGY-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSY--DNIKLFAWSPS 82 (254)
Q Consensus 9 ~v~~l~w~--~~~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~--d~i~l~d~~~~ 82 (254)
.|..+|.+ .+. ..+-...+.|.+.+.+|.....+. . ..-.....++++|. |.++.+-.. .+|...+.+
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-- 154 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-W---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-- 154 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-C---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-e---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--
Confidence 35555554 343 445455677888887775444432 1 12245789999995 555544322 234444432
Q ss_pred CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788 83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES 126 (254)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~ 126 (254)
..... .........+.|++.+++++|..+.. .+.|...|+
T Consensus 155 G~~~~----~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 155 GSERT----TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp SCSCE----EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceE----EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 21111 11223456789999998877776664 456766665
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.58 E-value=10 Score=30.66 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=54.0
Q ss_pred EEEEecCC-eEEEEeCCCcEEEEe-C-CCCEE-----EEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEec-C
Q psy12788 11 YALSWPAG-YILAAGSDRIVTIYE-S-DGRVH-----RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS-P 81 (254)
Q Consensus 11 ~~l~w~~~-~l~s~s~D~~i~vWd-~-~g~~~-----~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~-~ 81 (254)
.++.|+++ .|..+ .|+.|+-++ . ++..- ..+ .. .-=..+..|.|.|+|.+.|+. .+. ++... +
T Consensus 91 ~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~v-g~---~gw~~~~~lff~p~G~Lyav~-dg~--lyr~~~P 162 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEV-GS---GGWSGFKFLFFHPNGYLYAVH-GQQ--FYKALPP 162 (236)
T ss_dssp SEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEE-EC---SSGGGEEEEEECTTSCEEEEE-TTE--EEEECCC
T ss_pred eEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEe-cc---CCCCceEEEEECCCceEEEEe-CCc--EEecCCC
Confidence 46777876 34444 678888888 3 33210 000 00 001368999999999999988 334 33221 1
Q ss_pred --CCcceeecCceecC--CCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788 82 --SKSVWEEQPNKTIP--NLYTISALSWKRDGSRIACGGLCGSV 121 (254)
Q Consensus 82 --~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~g~~dg~v 121 (254)
....|... ...+. .-..-.-+.|.|+|.+.++. +|.+
T Consensus 163 ~~~~~~wl~~-~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 163 VSNQDNWLAR-ATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp SSTTCCHHHH-CEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCcccccc-cceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 11222111 11111 11233447799999988876 6633
No 314
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=74.65 E-value=48 Score=29.81 Aligned_cols=63 Identities=8% Similarity=0.048 Sum_probs=36.0
Q ss_pred CEEEEEECCC--CCEEEEEeCC-cEEEEEecCCCcceeecCceecC--CCCcEeEEEE-------ecCCCeEEEeecCC
Q psy12788 53 EFTVACSSPS--GQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIP--NLYTISALSW-------KRDGSRIACGGLCG 119 (254)
Q Consensus 53 ~v~~~a~sPd--g~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~--~~~~i~~l~~-------spdG~~la~g~~dg 119 (254)
....++|+|. ++++++-... ++++.|.. .+.... ..... .......|+| +++|++|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~--~~~v~~--l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK--NRMLSS--PLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT--TTEEEE--EECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC--CCEEEE--EEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 3568999993 4444444332 36666633 322221 11111 1235889999 99999777776554
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=74.44 E-value=38 Score=28.55 Aligned_cols=54 Identities=6% Similarity=-0.082 Sum_probs=30.3
Q ss_pred CEEEEEECCCCC-EEEEEeCCcEEEEEecCCCcceee-cCc--eecCCCCcEeEEEEecC
Q psy12788 53 EFTVACSSPSGQ-AVVVGSYDNIKLFAWSPSKSVWEE-QPN--KTIPNLYTISALSWKRD 108 (254)
Q Consensus 53 ~v~~~a~sPdg~-~la~gs~d~i~l~d~~~~~~~~~~-~~~--~~~~~~~~i~~l~~spd 108 (254)
....++|.|+|+ ++++-...+|++++- ....-.. ... ...........|+|+||
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~--~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA--GKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET--TTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC--CCceeeEecCCcccccCCCCCceeEEECCC
Confidence 467999999999 776543335766662 1211000 000 01112346789999996
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=73.93 E-value=58 Score=30.37 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=84.4
Q ss_pred CEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeec-CCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceee
Q psy12788 10 PYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYT-APHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEE 88 (254)
Q Consensus 10 v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~-~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~ 88 (254)
|.++.-....|-.++.+ -+..+|........+... .. -....|.++...++|.+.+ |..+++..++.. ......
T Consensus 105 i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-gt~~Gl~~~~~~--~~~~~~ 179 (758)
T 3ott_A 105 VRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNG-LPNNTIYSIIRTKDNQIYV-GTYNGLCRYIPS--NGKFEG 179 (758)
T ss_dssp EEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHC-CSCSCEEEEEECTTCCEEE-EETTEEEEEETT--TTEEEE
T ss_pred EEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCC-cCCCeEEEEEEcCCCCEEE-EeCCCHhhCccC--CCceEE
Confidence 44444344455556555 577788433333333111 01 1134689999999998775 455676666632 222211
Q ss_pred cCceec--CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEec
Q psy12788 89 QPNKTI--PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ 166 (254)
Q Consensus 89 ~~~~~~--~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 166 (254)
...... .....|.++...++|..|-.|+. +.+..+|..+++... ....
T Consensus 180 ~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-----------------------------~~~l 229 (758)
T 3ott_A 180 IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-----------------------------TEAF 229 (758)
T ss_dssp ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-----------------------------EEEE
T ss_pred ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-----------------------------ccCC
Confidence 000000 01224888888887775555664 456666653322110 0000
Q ss_pred CCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788 167 YGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV 204 (254)
Q Consensus 167 ~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~ 204 (254)
....|.++....++.+.++. ++.+.++|..+++...+
T Consensus 230 ~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 230 HNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHI 266 (758)
T ss_dssp EEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEE
T ss_pred CCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEE
Confidence 11246666666667788776 56788888877765443
No 317
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=71.99 E-value=47 Score=28.51 Aligned_cols=101 Identities=8% Similarity=0.066 Sum_probs=56.8
Q ss_pred CCcEEEE--eCCCCEEEEeeecCCC-CCC-CCEEEEEE--CCC-CC-EEEEEeCCc-EEEEEecCC-CcceeecCceecC
Q psy12788 26 DRIVTIY--ESDGRVHRIFDYTAPH-YKE-REFTVACS--SPS-GQ-AVVVGSYDN-IKLFAWSPS-KSVWEEQPNKTIP 95 (254)
Q Consensus 26 D~~i~vW--d~~g~~~~~~~~~~~~-~~~-~~v~~~a~--sPd-g~-~la~gs~d~-i~l~d~~~~-~~~~~~~~~~~~~ 95 (254)
+++|.++ |.....+..+...... +.. ..++.+++ +|. |+ ++.+...++ +..|++... ...........++
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 5789999 4333345444210000 011 46777788 885 55 344455554 667776421 2112111123333
Q ss_pred CCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788 96 NLYTISALSWKRDGSRIACGGLCGSVELFES 126 (254)
Q Consensus 96 ~~~~i~~l~~spdG~~la~g~~dg~v~iwd~ 126 (254)
-...+..|...+...+|..+-.+..|..+|+
T Consensus 178 lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 178 MNSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred CCCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 4457889999999999999999866555553
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=71.17 E-value=15 Score=31.41 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=22.4
Q ss_pred CeEEEEeCCCcEEEEe-CCCCEEEEee
Q psy12788 18 GYILAAGSDRIVTIYE-SDGRVHRIFD 43 (254)
Q Consensus 18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~ 43 (254)
+.++.++.|+.+.-.| .+|+.+.+++
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~ 37 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIE 37 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 4688999999999999 7899887765
No 319
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.87 E-value=17 Score=33.66 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=34.9
Q ss_pred EEEEECCCCCEEEEEeCC-----------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe
Q psy12788 55 TVACSSPSGQAVVVGSYD-----------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 115 (254)
Q Consensus 55 ~~~a~sPdg~~la~gs~d-----------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g 115 (254)
=-|+|+|.|.+++.-..+ .-.+|-.....+.... ...-+...+++.++|+|||+.|.+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r--f~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR--FMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE--EEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEE--EEeCCCCccCcCeeECCCCCEEEEE
Confidence 468999999977653211 1124443333322111 1222344689999999999988765
No 320
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.14 E-value=28 Score=32.15 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=37.3
Q ss_pred CEEEEEECCCCCEEE-EEeC----------CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee
Q psy12788 53 EFTVACSSPSGQAVV-VGSY----------DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116 (254)
Q Consensus 53 ~v~~~a~sPdg~~la-~gs~----------d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~ 116 (254)
....|+|+|+|.+.. +-.. ..-.+|-+.+..+.... ...-+...+++.++||||++.|.++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~--fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR--FMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE--EEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE--EEeCCCCccccCCEECCCCCEEEEEE
Confidence 456799999999876 4111 01145655543332211 11112335789999999999987764
No 321
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=61.72 E-value=12 Score=35.37 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeee
Q psy12788 9 PPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDY 44 (254)
Q Consensus 9 ~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~ 44 (254)
.|.++.+....|++-+.|+++|+|| .+++++.+.+.
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4556566666899999999999999 88888877764
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=61.33 E-value=1.4e+02 Score=29.94 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=72.5
Q ss_pred CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEE
Q psy12788 27 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSW 105 (254)
Q Consensus 27 ~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~ 105 (254)
|.|.+++ .++ .++.+ +.. ...+.+++++-- +| +|++|-..++++|+|...+..-.+ ...+. .|..+..
T Consensus 864 Gri~vf~v~~~-kL~lv-~~~--~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~--~~~~~---~i~~~~l 932 (1158)
T 3ei3_A 864 GRIVVFQYSDG-KLQTV-AEK--EVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTE--CNHYN---NIMALYL 932 (1158)
T ss_dssp EEEEEEEEETT-EEEEE-EEE--EESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEE--EEECC---CSCEEEE
T ss_pred eEEEEEEEECC-EEEEE-EEE--EcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEE--eeccc---cEEEEEE
Confidence 5688887 433 33333 221 234678887632 35 555666567999999754321101 11111 2344445
Q ss_pred ecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEec-CCCceeEEEEecCcEEEE
Q psy12788 106 KRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ-YGYEITDVAIMGNDRYLV 184 (254)
Q Consensus 106 spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~i~~i~~~~~~~~~v 184 (254)
.-.|++|++|..-..|.+..... ..+ .-..+..+ ....++++.+-.++.+++
T Consensus 933 ~~~~~~I~vgD~~~Sv~~~~y~~------------------------~~~---~L~~~a~D~~~~~vta~~~ld~~t~l~ 985 (1158)
T 3ei3_A 933 KTKGDFILVGDLMRSVLLLAYKP------------------------MEG---NFEEIARDFNPNWMSAVEILDDDNFLG 985 (1158)
T ss_dssp EEETTEEEEEESSBCEEEEEEET------------------------TTT---EEEEEEECCSCBCEEEEEEEETTEEEE
T ss_pred eccCCEEEEEEhhheEEEEEEEc------------------------CCC---eEEEEEeecccccEEEEEEEccCcEEE
Confidence 45788999999888887764311 011 11111111 123577777765667777
Q ss_pred EECCCcEEEEecc
Q psy12788 185 ARTPDTLLLGDLH 197 (254)
Q Consensus 185 ~~~d~~i~i~dl~ 197 (254)
+..++.+.+....
T Consensus 986 aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 986 AENAFNLFVCQKD 998 (1158)
T ss_dssp EETTSEEEEEEEC
T ss_pred EcCCCcEEEEecC
Confidence 7777777766443
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=56.91 E-value=76 Score=25.60 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=50.6
Q ss_pred ecCCeEEEEeCC-----CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC------cEEEEEecCCC
Q psy12788 15 WPAGYILAAGSD-----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD------NIKLFAWSPSK 83 (254)
Q Consensus 15 w~~~~l~s~s~D-----~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d------~i~l~d~~~~~ 83 (254)
.+...++.||.+ ..+.+||........+. ... .......++.+ ++++++.|+.+ .+.+|| ...
T Consensus 120 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd--~~~ 193 (308)
T 1zgk_A 120 IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML-TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYY--PER 193 (308)
T ss_dssp ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEE--TTT
T ss_pred ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC-ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEe--CCC
Confidence 344445555543 34777784333333321 111 11112233333 67888888754 244555 557
Q ss_pred cceeecCceecCCC-CcEeEEEEecCCCeEEEeecC-----CcEEEEeee
Q psy12788 84 SVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLC-----GSVELFESV 127 (254)
Q Consensus 84 ~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~d-----g~v~iwd~~ 127 (254)
..|.... ..+.. ..-..+.+ ++++++.|+.+ ..+.+||..
T Consensus 194 ~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 194 NEWRMIT--AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TEEEECC--CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CeEeeCC--CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 7887532 12211 11222333 78888888765 346666654
No 324
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=56.27 E-value=1.2e+02 Score=27.78 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=53.1
Q ss_pred CCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEEEecCCC
Q psy12788 9 PPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLFAWSPSK 83 (254)
Q Consensus 9 ~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~d~~~~~ 83 (254)
.+.+++|++ +.|. +-...+.|+.++.+|.....+- . ..-.....+|+++.+. +..+-+.. .|.+.+.+...
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~---~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-T---AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-E---CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 467888876 3444 4344677888886664332321 1 1123466899997554 44443333 47777754221
Q ss_pred cceeecCceecCCCCcEeEEEEecCCCeEEEe
Q psy12788 84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACG 115 (254)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g 115 (254)
.. ...........+|++.|...+|...
T Consensus 426 ~~-----~l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 426 RK-----ILISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp CE-----EEECTTCCSEEEEEEETTTTEEEEE
T ss_pred EE-----EEEECCCCCeeeEEEEcCCCcEEEe
Confidence 10 1111234567899999974444433
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=53.16 E-value=85 Score=25.03 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=54.0
Q ss_pred EecCCeEEEEeCC-----CcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc----EEEEEecC
Q psy12788 14 SWPAGYILAAGSD-----RIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN----IKLFAWSP 81 (254)
Q Consensus 14 ~w~~~~l~s~s~D-----~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~----i~l~d~~~ 81 (254)
..+...++.||.+ ..+.+|| .+++ ....+. ... .......++.+ ++++++.|+.+. -.+|-++.
T Consensus 60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMN-VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCC-CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcC
Confidence 3344456666654 3578888 4433 022221 111 11112233333 678888887541 12444446
Q ss_pred CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-----CcEEEEeeeee
Q psy12788 82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-----GSVELFESVLK 129 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-----g~v~iwd~~~~ 129 (254)
....|... ...+... ....+..-++++++.|+.+ ..+.+||..+.
T Consensus 136 ~~~~W~~~--~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 136 NIDQWSML--GDMQTAR-EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp TTTEEEEE--EECSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred CCCeEEEC--CCCCCCc-ccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 67788652 2222111 1111222388898988865 45788886543
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=52.18 E-value=90 Score=25.00 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=47.0
Q ss_pred EecCCeEEEEeCC------CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------CcEEEE
Q psy12788 14 SWPAGYILAAGSD------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------DNIKLF 77 (254)
Q Consensus 14 ~w~~~~l~s~s~D------~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d~i~l~ 77 (254)
..+...++.||.+ ..+.+||........+. ... .......++.+ ++++++.|+. +.+.+|
T Consensus 99 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~y 174 (306)
T 3ii7_A 99 AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-SML-TQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVY 174 (306)
T ss_dssp EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-CCS-SCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEE
T ss_pred EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-CCc-CCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEe
Confidence 3344456667665 45788884444333332 111 11112223333 6788888763 234455
Q ss_pred EecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCC
Q psy12788 78 AWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCG 119 (254)
Q Consensus 78 d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg 119 (254)
| .....|.... ..+.. ..-..+. -++++++.|+.++
T Consensus 175 d--~~~~~W~~~~--~~p~~r~~~~~~~--~~~~i~v~GG~~~ 211 (306)
T 3ii7_A 175 D--PATETWTELC--PMIEARKNHGLVF--VKDKIFAVGGQNG 211 (306)
T ss_dssp E--TTTTEEEEEC--CCSSCCBSCEEEE--ETTEEEEECCEET
T ss_pred C--CCCCeEEECC--CccchhhcceEEE--ECCEEEEEeCCCC
Confidence 5 5567786532 11111 1112222 2778888887654
No 327
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=51.64 E-value=1e+02 Score=28.61 Aligned_cols=109 Identities=11% Similarity=0.141 Sum_probs=56.1
Q ss_pred cCCeEEEEeCC----CcEEEEe-CCCCEEEEeeecC----CCCCC-CCEEEEEECCCCCEEEEEeCCc----E-EEEEec
Q psy12788 16 PAGYILAAGSD----RIVTIYE-SDGRVHRIFDYTA----PHYKE-REFTVACSSPSGQAVVVGSYDN----I-KLFAWS 80 (254)
Q Consensus 16 ~~~~l~s~s~D----~~i~vWd-~~g~~~~~~~~~~----~~~~~-~~v~~~a~sPdg~~la~gs~d~----i-~l~d~~ 80 (254)
+...++.||.+ ..+.+|| .+++ ...+.... . +.. ..-.++.+..+|++++.|+.+. + .+|-++
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~-W~~~~~~~p~~~~-p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDK-IDMKNIEVSSSEV-PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSC-EEEEECCCCCSCC-CCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCe-EEEeccCCCCCCC-CccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 34456666653 3577788 4443 22222010 0 111 1233444443788888887531 1 244444
Q ss_pred CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC--cEEEEeeee
Q psy12788 81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG--SVELFESVL 128 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg--~v~iwd~~~ 128 (254)
.....|.... ..+....-.+++.-.+|++++.|+.++ .+.+||..+
T Consensus 475 ~~t~~W~~~~--~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 475 MKTREWSMIK--SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTTTEEEECC--CCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred CCCCcEEECC--CCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence 5677887632 112111112223324899999998765 688888654
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.52 E-value=22 Score=34.72 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeee
Q psy12788 9 PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDY 44 (254)
Q Consensus 9 ~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~ 44 (254)
.+.+++..++ .+++-+.|+++|+|+ .+|+++.+.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3455665543 788999999999999 88999988764
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=45.15 E-value=1.3e+02 Score=24.72 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=27.7
Q ss_pred CCCEEEEEeCC-------cEEEEEecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeec
Q psy12788 62 SGQAVVVGSYD-------NIKLFAWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGL 117 (254)
Q Consensus 62 dg~~la~gs~d-------~i~l~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~ 117 (254)
++++++.|+.+ .+..+|+++....|..... .+.. ......+...++++++.|+.
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~iyv~GG~ 261 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAP--VSSPDGVAGGFAGISNDSLIFAGGA 261 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCC--SSTTTCCBSCEEEEETTEEEEECCE
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCC--CCCCcccccceEEEECCEEEEEcCc
Confidence 67777777632 2456766556778876321 1111 11122233447788888874
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=44.13 E-value=36 Score=31.52 Aligned_cols=75 Identities=7% Similarity=-0.038 Sum_probs=46.5
Q ss_pred CEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcce-----eecC--ceecCCCCcEeEEEEecCCCeEEEeecCCcEEE
Q psy12788 53 EFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVW-----EEQP--NKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 123 (254)
Q Consensus 53 ~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~-----~~~~--~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~i 123 (254)
....+..+|||+++++++.- ++-++++....... .... ..+.+---...-.+|.++|.-..+--.|..|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 34467899999999887743 58899975311100 0000 001111124566899999955555558999999
Q ss_pred Eeee
Q psy12788 124 FESV 127 (254)
Q Consensus 124 wd~~ 127 (254)
|++.
T Consensus 404 Wni~ 407 (638)
T 3sbq_A 404 WNME 407 (638)
T ss_dssp EEHH
T ss_pred Eecc
Confidence 9864
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=43.56 E-value=83 Score=26.66 Aligned_cols=25 Identities=0% Similarity=0.041 Sum_probs=19.7
Q ss_pred cCcEEEEEECCCcEEEEeccCCcee
Q psy12788 178 GNDRYLVARTPDTLLLGDLHRNLLS 202 (254)
Q Consensus 178 ~~~~~~v~~~d~~i~i~dl~~~~~~ 202 (254)
.++..++++.++++.--|+.+|++.
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred cCCEEEEEecCCEEEEEECCCCcEE
Confidence 3566778888888888899999864
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=43.26 E-value=1.2e+02 Score=24.06 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=49.7
Q ss_pred ecCCeEEEEeCCC-----cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--------cEEEEEecC
Q psy12788 15 WPAGYILAAGSDR-----IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--------NIKLFAWSP 81 (254)
Q Consensus 15 w~~~~l~s~s~D~-----~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--------~i~l~d~~~ 81 (254)
.+...++.||.++ .+.+||...+....+. ... .......++.+ ++++++.|+.+ .+.+|| .
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd--~ 180 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMN-TRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYN--A 180 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCS-SCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEE--T
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCC-CcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEe--C
Confidence 3444556666543 4667774333333332 111 11112223333 67788887642 244555 5
Q ss_pred CCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCC-----cEEEEeee
Q psy12788 82 SKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCG-----SVELFESV 127 (254)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg-----~v~iwd~~ 127 (254)
....|.... ..+.. ..-..+. -++++++.|+.++ .+.+||..
T Consensus 181 ~~~~W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~ 228 (302)
T 2xn4_A 181 TTNEWTYIA--EMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPT 228 (302)
T ss_dssp TTTEEEEEC--CCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETT
T ss_pred CCCcEEECC--CCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCC
Confidence 577786521 11211 1112222 3788888888654 45556553
No 333
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.92 E-value=90 Score=28.78 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=35.8
Q ss_pred CCCEEEEecCC-eEEEEeC-------------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe
Q psy12788 8 VPPYALSWPAG-YILAAGS-------------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS 70 (254)
Q Consensus 8 ~~v~~l~w~~~-~l~s~s~-------------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs 70 (254)
..|..|+++++ .|.-+.. ...+..++ .+|++.+-+. . +...+++.++|+||+++|-++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-~---P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-G---PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-C---CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-C---CCCccccCCEECCCCCEEEEEE
Confidence 45778888874 2333211 11455567 4677554432 1 2235799999999999877654
No 334
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.32 E-value=1e+02 Score=28.37 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCEEEEecCC-eEEEEeCCC--------------cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE
Q psy12788 9 PPYALSWPAG-YILAAGSDR--------------IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 69 (254)
Q Consensus 9 ~v~~l~w~~~-~l~s~s~D~--------------~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g 69 (254)
.|-.|+|++. .|..+ +|+ .+.+.+ .+|+..+-+.- +...+++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~----P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG----PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC----CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeC----CCCccCcCeeECCCCCEEEEE
Confidence 4577888874 33333 232 234445 45665544331 345799999999999887654
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.74 E-value=31 Score=33.71 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=31.2
Q ss_pred cEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788 99 TISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 134 (254)
Q Consensus 99 ~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~ 134 (254)
.+.+++..+|..++.+-+.|+++|+|++.++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 578888999999999999999999999887776543
No 336
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=38.08 E-value=1.5e+02 Score=23.50 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=50.9
Q ss_pred ecCCeEEEEeCC-----CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC------cEEEEEecCCC
Q psy12788 15 WPAGYILAAGSD-----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD------NIKLFAWSPSK 83 (254)
Q Consensus 15 w~~~~l~s~s~D-----~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d------~i~l~d~~~~~ 83 (254)
.+...++.||.+ ..+.++|........+. ... .......++.+ ++++++.|+.+ .+.+|| ...
T Consensus 158 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd--~~~ 231 (301)
T 2vpj_A 158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMA-TKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN--IRT 231 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE--TTT
T ss_pred ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCC-cccccceEEEE--CCEEEEEeCCCCCcccceEEEEe--CCC
Confidence 334455566654 34777884444343332 111 11112233333 67788888754 244555 556
Q ss_pred cceeecCceecCCC-CcEeEEEEecCCCeEEEeecCC-----cEEEEeee
Q psy12788 84 SVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCG-----SVELFESV 127 (254)
Q Consensus 84 ~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg-----~v~iwd~~ 127 (254)
..|.... ..+.. ....++ .-++++++.|+.++ .+.+||..
T Consensus 232 ~~W~~~~--~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 232 DSWTTVT--SMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TEEEEEC--CCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CcEEECC--CCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCC
Confidence 7786531 12211 112222 23788888888764 34555543
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=37.75 E-value=3.2e+02 Score=27.26 Aligned_cols=108 Identities=10% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC------CCEEEEEeC-Cc-EEEEEe
Q psy12788 9 PPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS------GQAVVVGSY-DN-IKLFAW 79 (254)
Q Consensus 9 ~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd------g~~la~gs~-d~-i~l~d~ 79 (254)
.|...+-+..+++.++ ++.+..++ .++++. ... .. .-+.+|.|+++.|. ++++|+|.+ |. ++|+.+
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~-~~~-~~--~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELR-QIS-HT--EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEE-EEE-EE--ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCcee-eec-cc--CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 3444444444555554 55666666 345332 221 11 23468999999874 479999997 74 999997
Q ss_pred cCCCcceeecCceecCCCCcEeEEEEe--cCCCeEEEeecCCcEEEEe
Q psy12788 80 SPSKSVWEEQPNKTIPNLYTISALSWK--RDGSRIACGGLCGSVELFE 125 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdG~~la~g~~dg~v~iwd 125 (254)
..-.... ...++......++.+. ....+|.+|-.||.+.-+.
T Consensus 590 ~~l~~~~----~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 590 PSFELLH----KEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG 633 (1158)
T ss_dssp TTCCEEE----EEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred CCCCeEE----EEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence 5322221 1112222233444332 2345788888899875543
No 338
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=36.14 E-value=1.9e+02 Score=24.17 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=56.9
Q ss_pred CCCEEEEecC---CeEEEEeCCC----cEEEEeCCCCEEEEeeec--CCCC--------CCCCEEEEEECC---CCCEEE
Q psy12788 8 VPPYALSWPA---GYILAAGSDR----IVTIYESDGRVHRIFDYT--APHY--------KEREFTVACSSP---SGQAVV 67 (254)
Q Consensus 8 ~~v~~l~w~~---~~l~s~s~D~----~i~vWd~~g~~~~~~~~~--~~~~--------~~~~v~~~a~sP---dg~~la 67 (254)
..|.+|+.+| +.|..++..+ .|...+..|+.-+.+... .. . ....|.+++++| .+.++|
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFN-KAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCC-CCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCC-CcccccccccccceeEEEeCCCCCCCEEEE
Confidence 3578888885 4566665554 444443344433322211 00 0 112478899997 355555
Q ss_pred EEeCCcEEEEEecCCCcceeecCcee---------------cCCCCcEeEEEEecC-CCeEEEeecCCcEE
Q psy12788 68 VGSYDNIKLFAWSPSKSVWEEQPNKT---------------IPNLYTISALSWKRD-GSRIACGGLCGSVE 122 (254)
Q Consensus 68 ~gs~d~i~l~d~~~~~~~~~~~~~~~---------------~~~~~~i~~l~~spd-G~~la~g~~dg~v~ 122 (254)
.+...+ ||........|+...... ......|.+|.+.|. ...|.++..++.+.
T Consensus 134 g~~~gg--l~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 134 GTSPQG--LFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp EEETTE--EEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEE
T ss_pred EecCCc--EEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEE
Confidence 443333 444445556776521100 011235889999984 44555565555443
No 339
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.57 E-value=35 Score=34.04 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=23.5
Q ss_pred CeEEEEeCCCcEEEEe-CCCCEEEEeee
Q psy12788 18 GYILAAGSDRIVTIYE-SDGRVHRIFDY 44 (254)
Q Consensus 18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~ 44 (254)
..|++-+.|+++|||| .+|+++.+.+.
T Consensus 250 ~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 250 NVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred cEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 4788999999999999 89999988763
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=31.99 E-value=2.1e+02 Score=23.40 Aligned_cols=190 Identities=7% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe---CCcEEEEEecCCCcceeecCceecCCCCcEeE
Q psy12788 26 DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS---YDNIKLFAWSPSKSVWEEQPNKTIPNLYTISA 102 (254)
Q Consensus 26 D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs---~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~ 102 (254)
+..|+..+.+|.....+. .-.+.+|+|+|+.|+-.. .+.-.|+....... ..+.-....+
T Consensus 87 ~~~Iy~i~~dg~~~~~l~---------~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs------~~~~lt~~~~-- 149 (302)
T 3s25_A 87 RNSLCRIKRNGHGSTVLD---------PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE------EKKKIKNHYL-- 149 (302)
T ss_dssp SEEEEEEETTSCCCEEEE---------CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC------CCEEEESSCC--
T ss_pred CCeEEEEeCCCCcceEee---------cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCC------CeEEEeCCCc--
Q ss_pred EEEecCCCeEEEeec-CCcEEEEeee--eeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEE----
Q psy12788 103 LSWKRDGSRIACGGL-CGSVELFESV--LKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA---- 175 (254)
Q Consensus 103 l~~spdG~~la~g~~-dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~---- 175 (254)
.+|+|+|+.|.-.+. ...|...++. .++.+..+.......+++..+.|--..+. ..+.....-|...+.|.
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~~~--~~I~~~~ldG~~~~~Lt~~~~ 227 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRD--NAIVHVNINNPNPVVLTEANI 227 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGGGT--TEEEEECSSSCCCEECSCSCE
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcCCC--cEEEEEECCCCCeEEEeCCCc
Q ss_pred --EecCcEEEEEECCC---cEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeec
Q psy12788 176 --IMGNDRYLVARTPD---TLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRI 247 (254)
Q Consensus 176 --~~~~~~~~v~~~d~---~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 247 (254)
+++.+.++..+++. .|...++ .+....-...+....+....+-+-+.++...+ +..+++
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~------------DG~~r~~l~~~~~~~i~i~~d~Iy~td~~~~~-i~~~~~ 291 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKN------------DGTGFKELAKGEFCNINVTSQYVYFTDFVSNK-EYCTST 291 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEET------------TSCCCEEEEESCEEEEEECSSEEEEEETTTCC-EEEEES
T ss_pred ceEEECCCEEEEEECCCCcEEEEEEC------------CCCccEEeeCCccceEEEeCCEEEEEECCCCe-EEEEEC
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=31.92 E-value=3.1e+02 Score=25.34 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=55.3
Q ss_pred cCCeEEEEeCCC------cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---EEEEEecCCCcce
Q psy12788 16 PAGYILAAGSDR------IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---IKLFAWSPSKSVW 86 (254)
Q Consensus 16 ~~~~l~s~s~D~------~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~---i~l~d~~~~~~~~ 86 (254)
+...++.||.+. .+.+||...+.-..+. .. +.+..-.+++.-+++++++.|+.+. +.+|| .....|
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~-~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd--~~t~~W 525 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK-SL--SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYN--VTEEIF 525 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC-CC--SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEE--TTTTEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC-CC--CCCcccceEEEEcCCEEEEECCCCCCCCEEEEE--CCCCce
Confidence 334556666432 3667774333332221 11 1111112333434899999988762 44555 567788
Q ss_pred eecCce-ecC-CCCcEeEEEEecC-CCeEEEeecC-------CcEEEEeeee
Q psy12788 87 EEQPNK-TIP-NLYTISALSWKRD-GSRIACGGLC-------GSVELFESVL 128 (254)
Q Consensus 87 ~~~~~~-~~~-~~~~i~~l~~spd-G~~la~g~~d-------g~v~iwd~~~ 128 (254)
...... ..+ ....-.++.+..+ +++++.|+.+ ..+.+||..+
T Consensus 526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 763211 011 1122344666666 7888888762 2466666543
No 342
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.98 E-value=32 Score=34.32 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=30.4
Q ss_pred cEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788 99 TISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK 134 (254)
Q Consensus 99 ~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~ 134 (254)
.+.+++..++.+++.+-+.|+++|+|++.++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 566778889999999999999999999987766543
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=29.44 E-value=3.4e+02 Score=25.01 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=64.1
Q ss_pred CCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCC--CCCCEEEEEECCCCCEEEEEeC-CcEEEEEecCC--
Q psy12788 9 PPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHY--KEREFTVACSSPSGQAVVVGSY-DNIKLFAWSPS-- 82 (254)
Q Consensus 9 ~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~--~~~~v~~~a~sPdg~~la~gs~-d~i~l~d~~~~-- 82 (254)
.|.++.-+++ .|-.|. ++-+..+|........+......+ ....|.++...++|.+.+ |+. .++.+++....
T Consensus 374 ~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~ 451 (758)
T 3ott_A 374 RIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQ 451 (758)
T ss_dssp CEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccc
Confidence 4666666553 455565 446888995443444432111101 224689999999888765 554 46777773210
Q ss_pred --CcceeecCcee-cC--CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788 83 --KSVWEEQPNKT-IP--NLYTISALSWKRDGSRIACGGLCGSVELFESVLK 129 (254)
Q Consensus 83 --~~~~~~~~~~~-~~--~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~ 129 (254)
...+....... .. ....|.++.-.++|++.+.++..+.+..+|..++
T Consensus 452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~ 503 (758)
T 3ott_A 452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR 503 (758)
T ss_dssp CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred cCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence 00110000000 00 1235899999999998764333455777776443
No 344
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=29.42 E-value=96 Score=22.34 Aligned_cols=31 Identities=6% Similarity=-0.024 Sum_probs=20.6
Q ss_pred cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECC
Q psy12788 28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61 (254)
Q Consensus 28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sP 61 (254)
+|.|.|.+|+.++++... ..+.....+.|+.
T Consensus 42 ~v~I~d~~G~~V~t~~~~---~~~aG~~~~~WDg 72 (138)
T 3c12_A 42 NFEITDANGTFVKQLSVP---ASAAGEVSFAWDG 72 (138)
T ss_dssp EEEEECSSCCEEEEEEEE---ESSSEEEEEEECS
T ss_pred EEEEEeCCCCEEEEEEcC---CcCCceEEEEECC
Confidence 477778889988887632 1223467788874
No 345
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=29.41 E-value=2.1e+02 Score=22.62 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=46.5
Q ss_pred ecCCeEEEEeCC-----CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc----EEEEEecCCCcc
Q psy12788 15 WPAGYILAAGSD-----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN----IKLFAWSPSKSV 85 (254)
Q Consensus 15 w~~~~l~s~s~D-----~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~----i~l~d~~~~~~~ 85 (254)
.+...++.||.+ ..+.+||...+....+. ... .......++.+ ++++++.|+.+. -.+|-++.....
T Consensus 60 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-NMR-DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-CCS-SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCcCCCccccceEEECCCCCceeeCC-CCC-ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 344456666654 24777884433333332 111 11112233333 678888887542 135555566778
Q ss_pred eeecCceecCCC-CcEeEEEEecCCCeEEEeecC
Q psy12788 86 WEEQPNKTIPNL-YTISALSWKRDGSRIACGGLC 118 (254)
Q Consensus 86 ~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~d 118 (254)
|.... ..+.. ..-..+. -++++++.|+.+
T Consensus 136 W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~ 165 (302)
T 2xn4_A 136 WFHVA--PMNTRRSSVGVGV--VGGLLYAVGGYD 165 (302)
T ss_dssp EEEEC--CCSSCCBSCEEEE--ETTEEEEECCEE
T ss_pred EeecC--CCCCcccCceEEE--ECCEEEEEeCCC
Confidence 87531 11111 1112222 377888877754
No 346
>4b4p_A FEDF, F18 fimbrial adhesin AC; cell adhesion, fimbriae, bacterial adhesins, protein-carbohy interactions, ABH blood group binding, STEC; 1.80A {Escherichia coli k-12} PDB: 4b4q_A* 4b4r_A*
Probab=29.39 E-value=1.4e+02 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=15.3
Q ss_pred CceeEEEEecCcEEEEEECCCcEEEEe
Q psy12788 169 YEITDVAIMGNDRYLVARTPDTLLLGD 195 (254)
Q Consensus 169 ~~i~~i~~~~~~~~~v~~~d~~i~i~d 195 (254)
+.|..+.|.|...=-..+..++|++|.
T Consensus 32 hqiynvnfipsssgtltcqagtilvwk 58 (151)
T 4b4p_A 32 HQIYNVNFIPSSSGTLTCQAGTILVWK 58 (151)
T ss_dssp EEEEEEEECCSSCEEEEEEECEEEEEE
T ss_pred eeeeeeeeeecCCCcEEEccceEEEEe
Confidence 356677776654322333456777774
No 347
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=27.69 E-value=3.9e+02 Score=25.14 Aligned_cols=113 Identities=4% Similarity=-0.136 Sum_probs=61.8
Q ss_pred CCCCEEEEecC---CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCC---CCCCEEEEEECCCC-C-EEEEEeCCc----E
Q psy12788 7 PVPPYALSWPA---GYILAAGSDRIVTIYESDGRVHRIFDYTAPHY---KEREFTVACSSPSG-Q-AVVVGSYDN----I 74 (254)
Q Consensus 7 ~~~v~~l~w~~---~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~---~~~~v~~~a~sPdg-~-~la~gs~d~----i 74 (254)
...|.+|+++| +.+..++..+.|...+-.|+.-+.+..... . ....+.+++++|.. . +++..+... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~-~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIE-AQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCC-GGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCC-cccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 35788999986 467778877877777656665544321000 0 12369999999953 3 333322211 3
Q ss_pred EEEEecCCCcceeecCc-eec----CCCCcEeEEEEecC-CCeEEEeecCCc
Q psy12788 75 KLFAWSPSKSVWEEQPN-KTI----PNLYTISALSWKRD-GSRIACGGLCGS 120 (254)
Q Consensus 75 ~l~d~~~~~~~~~~~~~-~~~----~~~~~i~~l~~spd-G~~la~g~~dg~ 120 (254)
.||.-......|+.... ... .....+..+++.|. ...+.++...+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 46654555667865211 000 11113567888885 345555553333
No 348
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=26.98 E-value=1.5e+02 Score=22.34 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=24.2
Q ss_pred EEEEEECCCCCEEEEEeCCcEEEEEecCCCcceee
Q psy12788 54 FTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEE 88 (254)
Q Consensus 54 v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~ 88 (254)
+--+.|+|+|...|.+...+ +.-+++...+.|..
T Consensus 112 lEp~eF~p~~~w~a~~~esG-~f~dvDLse~eW~D 145 (164)
T 1zso_A 112 IELIDFFPSNNFIVEDTKGK-LYYDVNLSDQNWCD 145 (164)
T ss_dssp EEEEEECCCSCEEEEETTSC-EEEEECCTTSCEEE
T ss_pred eeeEEEecCCcEEEEECCCC-cEEeeecCCCceec
Confidence 55678999999999885555 45566665666753
No 349
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=26.20 E-value=2.5e+02 Score=22.37 Aligned_cols=102 Identities=15% Similarity=0.220 Sum_probs=50.1
Q ss_pred ecCCeEEEEeC----C-----CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC------cEEEEEe
Q psy12788 15 WPAGYILAAGS----D-----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD------NIKLFAW 79 (254)
Q Consensus 15 w~~~~l~s~s~----D-----~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d------~i~l~d~ 79 (254)
.+...++.||. + ..+.++|...+....+. ... .......++.+ ++++++.|+.+ .+.+||
T Consensus 69 ~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd- 143 (308)
T 1zgk_A 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMS-VPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYE- 143 (308)
T ss_dssp ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCS-SCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEE-
T ss_pred ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CCC-cCccccEEEEE--CCEEEEEcCCCCCcccccEEEEC-
Confidence 33445566665 2 35777884444333332 111 11112233334 67888887643 244555
Q ss_pred cCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCC-----cEEEEee
Q psy12788 80 SPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCG-----SVELFES 126 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg-----~v~iwd~ 126 (254)
.....|.... ..+.. ..-.++.+ ++++++.|+.++ .+.+||.
T Consensus 144 -~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 144 -PERDEWHLVA--PMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp -TTTTEEEECC--CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred -CCCCeEeECC--CCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 5577887532 12211 11222222 788888888654 3555554
No 350
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=25.48 E-value=3.1e+02 Score=25.46 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=41.1
Q ss_pred CEEEEEEC----CCCC---EEEEEeCCc-E-EEEEecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcE
Q psy12788 53 EFTVACSS----PSGQ---AVVVGSYDN-I-KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSV 121 (254)
Q Consensus 53 ~v~~~a~s----Pdg~---~la~gs~d~-i-~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v 121 (254)
..+.++.+ ++|+ .+..|..++ + ++-.+.......++ ...++...+|..|.++++. .+|.+++..+.+
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee--~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~ 475 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEE--TQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVV 475 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEE--EECCTTCCCCCEEEECCSSSSCEEEEECSSCEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEE--ecccCCCCcceeeEeccCCCccEEEEEEcCeEE
Confidence 35666653 5554 344577775 3 44443221112222 2223334688899999998 999999988876
Q ss_pred EE
Q psy12788 122 EL 123 (254)
Q Consensus 122 ~i 123 (254)
++
T Consensus 476 ~v 477 (663)
T 1olz_A 476 QA 477 (663)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 351
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.29 E-value=1.2e+02 Score=28.64 Aligned_cols=56 Identities=11% Similarity=-0.039 Sum_probs=34.5
Q ss_pred EEEEEECCCcEEEEeccCCceeeE-eCC-C------------CCCceeEEeeCceEEEEEeC---CeeEEEEeec
Q psy12788 181 RYLVARTPDTLLLGDLHRNLLSEV-LWP-D------------SGRNEKFYFDNVTVCLVFNA---GELSIIEYGN 238 (254)
Q Consensus 181 ~~~v~~~d~~i~i~dl~~~~~~~~-~~~-~------------~~g~~~~~~~~~~~~~~~~~---g~~~~~~~~~ 238 (254)
-.++-+.|.++++||+.++++... .-+ . ..++-.-.++ ..+.++.+ |.+.+++...
T Consensus 233 fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~--~~lv~y~P~~~G~Fk~~~l~~ 305 (729)
T 3f7f_A 233 YLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYN--NTLVTLLPLENGLFQMGTLLV 305 (729)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESS--SEEEEEETTTTCEEEEEEEEC
T ss_pred EEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhee--eEEEEEecCCCCeEEEEEEEE
Confidence 456678899999999999985322 111 0 1222222222 56667776 7788877754
No 352
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.26 E-value=4.6e+02 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCcEeEEEEecCCCeEEEeecCCcEEE
Q psy12788 96 NLYTISALSWKRDGSRIACGGLCGSVEL 123 (254)
Q Consensus 96 ~~~~i~~l~~spdG~~la~g~~dg~v~i 123 (254)
...+|..|.+++++++|.+++..+.++|
T Consensus 468 ~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 468 EPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp SCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4457999999999999999998887766
No 353
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=22.31 E-value=3e+02 Score=21.92 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCCCEEEEEeC-C-c---EEEEEecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCCc
Q psy12788 61 PSGQAVVVGSY-D-N---IKLFAWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCGS 120 (254)
Q Consensus 61 Pdg~~la~gs~-d-~---i~l~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg~ 120 (254)
-++++++.|+. + . -.+|-++.....|.... ..+.. ..-.++ .-++++++.|+.++.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~--~~~~~iyv~GG~~~~ 208 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA--PMQTARSLFGAT--VHDGRIIVAAGVTDT 208 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC--CCSSCCBSCEEE--EETTEEEEEEEECSS
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC--CCCCchhceEEE--EECCEEEEEeccCCC
Confidence 46778888876 2 1 12444446677887632 12211 111222 237888888887653
No 354
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.71 E-value=2e+02 Score=19.63 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=12.6
Q ss_pred EEEEecCCCeEEEeecCCcEEEEe
Q psy12788 102 ALSWKRDGSRIACGGLCGSVELFE 125 (254)
Q Consensus 102 ~l~~spdG~~la~g~~dg~v~iwd 125 (254)
.+.+..||++++... ++.+.+|.
T Consensus 53 ~l~l~~dGNLVl~~~-~~~~~vW~ 75 (111)
T 3mez_A 53 TLRLNNRGQLEIHSA-NSNTPVWV 75 (111)
T ss_dssp EEEECTTSCEEEECS-SCSSCSEE
T ss_pred EEEEcCCCcEEEEeC-CCCEEEEE
Confidence 456677777766533 33333564
Done!