RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12788
(254 letters)
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 50.7 bits (122), Expect = 2e-07
Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 19/137 (13%)
Query: 6 HPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ 64
P L+ G I A + + IY Y + + S Q
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS--------SCVALSNDKQ 461
Query: 65 AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 123
V VG D+ + + + S + KTI + I+++++ +G+ + V
Sbjct: 462 FVAVGGQDSKVHV--YKLSGA--SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP 517
Query: 124 F-----ESVLKRTIWKG 135
+ + W
Sbjct: 518 YSVANNFELAHTNSWTF 534
Score = 42.2 bits (100), Expect = 9e-05
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 16 PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIK 75
G + D + + + G A + +A S G V Y +I
Sbjct: 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS-ADGDIAVAACYKHIA 435
Query: 76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF 124
+ +S K +P Y S ++ D +A GG V ++
Sbjct: 436 I--YSHGKLT-------EVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475
Score = 32.6 bits (75), Expect = 0.12
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 55 TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRI 112
TVA +SPSG G +++ W +++ TIP + +SW + RI
Sbjct: 63 TVAKTSPSGYYCASGDVHGNVRI--WDTTQT--THILKTTIPVFSGPVKDISWDSESKRI 118
Query: 113 ACGG 116
A G
Sbjct: 119 AAVG 122
Score = 32.2 bits (74), Expect = 0.16
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT--ISALSWKRDGSRIACGG 116
+P G D I L+ + + ++ + L+W DG++IA
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 117 LCGSV 121
++
Sbjct: 259 ADKTI 263
Score = 32.2 bits (74), Expect = 0.16
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 6 HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG 63
HP ++++ G L A R V Y + + + V+ S P
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS-PDN 548
Query: 64 QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116
+ GS DN + + W+ +K K + +++++ W + + I G
Sbjct: 549 VRLATGSLDNSVIV--WNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG 599
Score = 30.6 bits (70), Expect = 0.48
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 36/128 (28%)
Query: 6 HPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFT--------VA 57
+ ALS +A G D +V ++ + E + VA
Sbjct: 449 YNSSCVALS-NDKQFVAVGGQ--------DSKV-HVYKLSGASVSEVKTIVHPAEITSVA 498
Query: 58 CSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWKRDG 109
S +G +V + + N + + + ++ +SW D
Sbjct: 499 FS-NNGAFLVATDQSRKVIP---------YSVANNFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 110 SRIACGGL 117
R+A G L
Sbjct: 549 VRLATGSL 556
Score = 30.6 bits (70), Expect = 0.57
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 15/66 (22%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGS 110
+ + QA+V S + I + Y I+ALS DG
Sbjct: 288 LGII-WTKQALVSISANGFINF---------VNPELGSIDQVRYGHNKAITALSSSADGK 337
Query: 111 RIACGG 116
+
Sbjct: 338 TLFSAD 343
Score = 29.1 bits (66), Expect = 1.8
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 16/114 (14%)
Query: 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTV-ACS-SPSGQAVVVGSYDN-I 74
+ G D + +Y DG +F+ + +V + SP G + S D I
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263
Query: 75 KLFAWSPSKSVWEEQPNKTIPNLYTIS----ALSWKRDGSRIACGGLCGSVELF 124
K+ W+ + + KTIP I + W + G +
Sbjct: 264 KI--WNVATL----KVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFV 309
Score = 27.9 bits (63), Expect = 3.3
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 11 YALSW-PAGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV 67
ALS G L + + + ++ S G +R+F H T ++ G
Sbjct: 328 TALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVH--ATMITGIKTTSKGDLFT 383
Query: 68 VGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 115
V D++K+ S + L+ DG
Sbjct: 384 VSWDDHLKV--VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 40.6 bits (95), Expect = 3e-04
Identities = 11/134 (8%), Positives = 32/134 (23%), Gaps = 11/134 (8%)
Query: 1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
+ + + + ++ ++ V + K + VA
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203
Query: 61 PSGQAVVVGSYDN---IKLFAWSPSKSVWEE--------QPNKTIPNLYTISALSWKRDG 109
+ S D ++ F + K Y ++++ +
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 110 SRIACGGLCGSVEL 123
+ G G +
Sbjct: 264 KFLYTAGSDGIISC 277
Score = 31.0 bits (70), Expect = 0.33
Identities = 7/67 (10%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGL 117
PS +++ S+D + + + +++ + + ++ + +I G +
Sbjct: 20 IPSKSLLLITSWDGSLTV--YKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
Query: 118 CGSVELF 124
G +
Sbjct: 78 QGEILKV 84
Score = 28.7 bits (64), Expect = 2.1
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 55 TVACSSPSGQAVVVGSYDN-IKLF-AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI 112
++ S+D I++ + V + + + + SR+
Sbjct: 104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163
Query: 113 ACGGLCGSVELF 124
G V+ F
Sbjct: 164 IVGMNNSQVQWF 175
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 39.7 bits (93), Expect = 5e-04
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116
SP+ VGS I + + W + K P TI +L W + +A G
Sbjct: 109 SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLLAAGC 165
Score = 35.5 bits (82), Expect = 0.012
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 22/128 (17%)
Query: 16 PAGYILAAGS-DRIVTI--YESDGRVHRIFDYTAPHYKEREFTVACS--SPSGQAVVVGS 70
P A GS R++++ +E + P T+ P+ + G
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL----RSTILSLDWHPNNVLLAAGC 165
Query: 71 YDN-IKLF-------AWSPSKSVW-EEQPNKTIPNLY----TISALSWKRDGSRIACGGL 117
D + P SVW P T+ Y + A+ + G+ +A G
Sbjct: 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225
Query: 118 CGSVELFE 125
SV +
Sbjct: 226 DSSVTIAY 233
Score = 31.6 bits (72), Expect = 0.24
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 2/126 (1%)
Query: 11 YALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV 68
+A+ + P+G LA D VTI + + V
Sbjct: 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268
Query: 69 GSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL 128
G + L + S + + F ++
Sbjct: 269 GYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMD 328
Query: 129 KRTIWK 134
+ +
Sbjct: 329 LKGSSQ 334
Score = 29.3 bits (66), Expect = 1.4
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 21/128 (16%)
Query: 6 HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG 63
P P Y ++ + V +YE DG + + H ++ T +P
Sbjct: 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKS 67
Query: 64 QAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWKRDGSRIACG 115
+V S D N V+E++P+ T + + W + + A G
Sbjct: 68 NRIVTCSQDRNAY---------VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG 118
Query: 116 GLCGSVEL 123
+ +
Sbjct: 119 SGARVISV 126
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 17/137 (12%)
Query: 5 QHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 62
+ P S G+ +D + I + G + + + +++ +
Sbjct: 404 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL---NSPGSAVSLS-QNYV 459
Query: 63 GQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
+ G+ KL S + P + S +S + IA G + G +
Sbjct: 460 AVGLEEGNTIQVFKL--SDLEVSFDLKTPLR-----AKPSYISISPSETYIAAGDVMGKI 512
Query: 122 ELFESV---LKRTIWKG 135
L++ +K + W
Sbjct: 513 LLYDLQSREVKTSRWAF 529
Score = 33.7 bits (78), Expect = 0.049
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 10 PYALSW-PAGYILAAGSDRIVTIYESD---GRVHRIFDYTAPHYKEREFTVACS-SPSGQ 64
LS+ P +A + + D +V + +T H TV S Q
Sbjct: 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQ 79
Query: 65 AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-----ISALSWKRDGSRIACGG 116
+ G + + W + + + + IS +SW +G R+ G
Sbjct: 80 YLCSGDESGKVIV--WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 39.4 bits (91), Expect = 7e-04
Identities = 24/211 (11%), Positives = 58/211 (27%), Gaps = 35/211 (16%)
Query: 14 SWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72
P +L +TI + +V R + E + + + + +
Sbjct: 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIE--VDSANEIIYMYGHNEVNTEYFIWADNR 148
Query: 73 -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT 131
I ++ + + S+ +D +A G ++++
Sbjct: 149 GTIGFQSYEDDSQYIV----HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS---- 200
Query: 132 IWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTL 191
SP Q + E +I +V N ++V T+
Sbjct: 201 -----------SPDQASSRFPVDEEA------------KIKEVKFADNGYWMVVECDQTV 237
Query: 192 LLGDLHRNLLSEVLWPDSGRNEKFYFDNVTV 222
+ DL +++ + + K +
Sbjct: 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268
Score = 38.6 bits (89), Expect = 0.001
Identities = 17/133 (12%), Positives = 31/133 (23%), Gaps = 7/133 (5%)
Query: 5 QHPVPPYALSW-PAGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP 61
+ V + +LA S D I+ +Y S + E + +
Sbjct: 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR-FPVDE--EAKIKEVKFAD 224
Query: 62 SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
+G +VV + F G + +
Sbjct: 225 NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS 284
Query: 122 ELFESVLKRT-IW 133
K+T W
Sbjct: 285 LTIYKFDKKTKNW 297
Score = 32.4 bits (73), Expect = 0.11
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 2 RVVQHPVPPYALSW-PAGYILAAGS--DRIVTIYESDGRV-------HRIFDYTAPHYKE 51
+ + +G + A S +TIY+ D + +
Sbjct: 255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADF 314
Query: 52 REFTVACSSPSGQAVVVGSYDNIKLFAWSP 81
+ V C G A ++ + D+ + A +P
Sbjct: 315 TDMDVVCGD-GGIAAILKTNDSFNIVALTP 343
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 37.5 bits (87), Expect = 0.004
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 24/123 (19%)
Query: 16 PAGYILAAGS-DRIVTIYESDG-------RVHRIFDYTAPHYKEREFTVACS--SPSGQA 65
P +LA+ S D + +++ V R F + ++ E V C S G
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812
Query: 66 VVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYT-----ISALSWKRDGSRIACGGLCGS 120
++V + + + L ++ + + ++T I +
Sbjct: 813 IIVAAKNKVLL---------FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863
Query: 121 VEL 123
VEL
Sbjct: 864 VEL 866
Score = 36.0 bits (83), Expect = 0.013
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 6 HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG 63
H + + + P G S D+ + ++E+ +A K +E V +
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN----SAIVLK-QEIDVVFQ-ENE 934
Query: 64 QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 122
V+ ++L + Q + +S +A G G+++
Sbjct: 935 TMVLAVDNIRGLQL--IAGKTG----QIDYLPEA--QVSCCCLSPHLEYVAFGDEDGAIK 986
Query: 123 L 123
+
Sbjct: 987 I 987
Score = 31.7 bits (72), Expect = 0.26
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPS----------KSVWEEQPNKTIPNLYTISALSWKRD 108
SP + + S D ++L W K + + + SW D
Sbjct: 752 SPDDELLASCSADGTLRL--WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 109 GSRIACGG 116
G +I
Sbjct: 810 GDKIIVAA 817
Score = 31.3 bits (71), Expect = 0.31
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 23/111 (20%)
Query: 19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL 76
+LA + R + + G++ + + S P + V G D IK+
Sbjct: 936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQV-------SCCCLS-PHLEYVAFGDEDGAIKI 987
Query: 77 FAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIACGGLCGSVEL 123
E N+ + + + + DG + +++
Sbjct: 988 ---------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Score = 30.6 bits (69), Expect = 0.62
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPS--KSVWEEQPNKTIPNLY----TISALSWKRDGSRI 112
S G + G + I++ W+ S + + P ++ + + D +
Sbjct: 1136 SLDGILLATGDDNGEIRI--WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1193
Query: 113 ACGG 116
G
Sbjct: 1194 VSAG 1197
Score = 29.8 bits (67), Expect = 0.93
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGL 117
S GQ + D +++ + + I + + ++ D S IA
Sbjct: 624 SQDGQRIASCGADKTLQV--FKAETG----EKLLDIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 118 CGSVEL 123
V++
Sbjct: 678 DKKVKI 683
Score = 29.8 bits (67), Expect = 0.97
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 5 QHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG 63
Q V + L +L+ D V ++ GR+ R F H + + A S
Sbjct: 1044 QETVKDFRLL-QDSRLLSWSFDGTVKVWNVITGRIERDFT---CH-QGTVLSCAIS-SDA 1097
Query: 64 QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGG 116
S D K+ WS P + + + ++ DG +A G
Sbjct: 1098 TKFSSTSADKTAKI--WSFDLL----SPLHELKGHNGCVRCSAFSLDGILLATGD 1146
Score = 29.0 bits (65), Expect = 1.7
Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 18/118 (15%)
Query: 6 HPVPPYALSW-PAGYILAAGS-DRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACSSPS 62
H ++ +A S D+ V I++S G++ +D + E+ +
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE----HSEQVNCCHFT-NK 710
Query: 63 GQAVVV--GSYDN-IKLFAWSPSKSVWEEQPNKTIPN-LYTISALSWKRDGSRIACGG 116
+++ GS D +KL W ++ ++ T+ +++ + D +A
Sbjct: 711 SNHLLLATGSNDFFLKL--WDLNQ----KECRNTMFGHTNSVNHCRFSPDDELLASCS 762
Score = 27.1 bits (60), Expect = 7.3
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 70 SYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE 125
W K++ P+ + + +DG RIA G ++++F+
Sbjct: 588 GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFK 643
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 36.6 bits (85), Expect = 0.006
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 10/118 (8%)
Query: 11 YALSW-PAGY-ILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV 67
+L W P +A GS + +++ D + F + + + + +
Sbjct: 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP-GDAITGMKFNQFNTNQLF 135
Query: 68 VGSYDN-IKLFAWSPSKSVWEE-QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 123
V S L S SV + + Y +S +A G G + L
Sbjct: 136 VSSIRGATTL--RDFSGSVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLL 189
Score = 27.7 bits (62), Expect = 4.0
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 2 RVVQHPVPPYALS--WPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVAC 58
+ HP+ ++ +P +L R + IY+ + G + ++
Sbjct: 304 KATWHPMYDLIVAGRYPDDQLLLND-KRTIDIYDANSGGLVHQLR---DPNAAGIISLNK 359
Query: 59 SSPSGQAVVVGSYDNIKLFAWSPS 82
SP+G + G NI + W+
Sbjct: 360 FSPTGDVLASGMGFNILI--WNRE 381
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 36.6 bits (85), Expect = 0.007
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 118
+ SG S D+ ++L WS + E+P ++ + L W + IA
Sbjct: 32 TVSGTVDANFSTDSSLEL--WSL-LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN 88
Query: 119 GSVELF 124
GS+EL+
Sbjct: 89 GSLELY 94
Score = 30.8 bits (70), Expect = 0.48
Identities = 14/121 (11%), Positives = 37/121 (30%), Gaps = 30/121 (24%)
Query: 11 YALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKERE-----------FTVAC 58
L W I+A D +G + ++ + TV
Sbjct: 71 NDLDWSHNNKIIAGALD--------NGSL-ELYSTNEANNAINSMARFSNHSSSVKTVKF 121
Query: 59 SSPSGQAVVVGSYDN-IKLFAW------SPSKSVWEEQPNKTIPNLYTISALSWKRDGSR 111
++ + G + I + W + P +++ ++ + +L+W + +
Sbjct: 122 NAKQDNVLASGGNNGEIFI--WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH 179
Query: 112 I 112
+
Sbjct: 180 V 180
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 36.2 bits (83), Expect = 0.007
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC 114
+ +S + + D + +F + + K +A+S D + +
Sbjct: 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAEDDTTVII 166
Query: 115 GGLCGSV 121
G V
Sbjct: 167 ADKFGDV 173
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 36.0 bits (82), Expect = 0.009
Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 41/232 (17%)
Query: 1 GRVVQHPVPPYALSWP------AGYILAAGSDRIVTIY-------ESDGRVHRIFDYTAP 47
G +V P + L+ + ++++ I+ + E+ + +
Sbjct: 86 GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL 145
Query: 48 HYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR 107
+P+ ++V + + +++ + T+P+ ++++ W
Sbjct: 146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---VKVCATLPSTVAVTSVCWSP 202
Query: 108 DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQY 167
G ++A G G+V + + + + P +S +
Sbjct: 203 KGKQLAVGKQNGTVVQYLP-------TLQEKKVIPCPPFY----------------ESDH 239
Query: 168 GYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDN 219
+ DV +G + + L + L P F N
Sbjct: 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSP--DVVMALLPKKEEKHPEIFVN 289
Score = 30.7 bits (68), Expect = 0.42
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 56 VACSSPSGQAVVVGSYDNIKLFAWS--PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA 113
V SG + + N+ + + ++ +P + I L+ D ++
Sbjct: 51 VFAGGASG--LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLS 108
Query: 114 CGGLCGS 120
+
Sbjct: 109 ACMMSSE 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 35.3 bits (82), Expect = 0.014
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 17/135 (12%)
Query: 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
V+Q P Y + A ++R + +Y+ + + F K + VA
Sbjct: 165 MVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQ-PSEFRRIESPLKHQHRCVAIF-K 222
Query: 62 SGQ----AVVVGSYDN-IKLFAWSPSKSVWE----------EQPNKTIPNLYTISALSWK 106
Q +GS + + + +P + ++Y ++ +++
Sbjct: 223 DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282
Query: 107 RDGSRIACGGLCGSV 121
+A G G
Sbjct: 283 PVHGTLATVGSDGRF 297
Score = 28.4 bits (64), Expect = 2.7
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 56 VACS--SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN-KTIPN-LYT----ISALSWK 106
++ S + G ++ GS+ N ++ WE Q + +TIP + + W
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRC---------WEVQDSGQTIPKAQQMHTGPVLDVCWS 95
Query: 107 RDGSRIACGGLCGSVELF 124
DGS++ + +++
Sbjct: 96 DDGSKVFTASCDKTAKMW 113
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 34.9 bits (81), Expect = 0.020
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 118
+P+ + VGS I + + W + K P T+ +L W + +A G
Sbjct: 105 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 119 GSVELFESVLKRTIWK-GKFEMIYVSPSQVLVKPLSG 154
+F + +K + P L+ S
Sbjct: 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200
Score = 34.1 bits (79), Expect = 0.033
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 48/135 (35%)
Query: 11 YALSW-PAGYILAAGSDRIVTIYESDGRVHRIFD-YTAPHYKEREFTVACS--------- 59
+L W P +LAAGS D + RIF Y + T S
Sbjct: 146 LSLDWHPNSVLLAAGSC--------DFKC-RIFSAYIKEVEERPAPTPWGSKMPFGELMF 196
Query: 60 --------------SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT----I 100
S +G V S+D+ + L + + L + +
Sbjct: 197 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL---------ADADKKMAVATLASETLPL 247
Query: 101 SALSWKRDGSRIACG 115
A+++ + S +A G
Sbjct: 248 LAVTFITESSLVAAG 262
Score = 28.8 bits (65), Expect = 1.6
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 60 SPSGQAVVVGSYDNIKLFAWSPSKSVW 86
V G LF + +
Sbjct: 253 ITESSLVAAGHDCFPVLFTYDSAAGKL 279
Score = 28.0 bits (63), Expect = 3.6
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIAC 114
+ + + ++ + + + S + W + + L ++ + W D +RI
Sbjct: 17 NKDRTQIAICPNNHEVHI--YEKSGNKWVQ-----VHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 115 GG 116
G
Sbjct: 70 CG 71
Score = 26.8 bits (60), Expect = 6.7
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 12/61 (19%)
Query: 60 SPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIAC 114
+P +V D N + W+ W K + + W + + A
Sbjct: 61 APDSNRIVTCGTDRNAYV--WTLKGRTW-----KPTLVILRINRAARCVRWAPNEKKFAV 113
Query: 115 G 115
G
Sbjct: 114 G 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.021
Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 52/189 (27%)
Query: 26 DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYDNIKLFAWSPSKS 84
D I+ ++ R+F S V I + + S
Sbjct: 52 DHIIMSKDAVSGTLRLFW------------TLLSKQEEMVQKFVEEVLRIN-YKFLMSP- 97
Query: 85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSP 144
+ + + P++ T + +RD L ++F K + + + P
Sbjct: 98 -IKTEQRQ--PSMMTRMYIE-QRD-------RLYNDNQVFA---KYNVSRLQ-------P 136
Query: 145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG--NDRYLVARTPDTLLLGDLHRNLLS 202
L + L + V++ G + ++ D L + +
Sbjct: 137 YLKLRQALLELRPAKNVLI---DG--------VLGSGKTWVAL---DVCLSYKVQCKMDF 182
Query: 203 EVLWPDSGR 211
++ W +
Sbjct: 183 KIFWLNLKN 191
Score = 32.9 bits (74), Expect = 0.11
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 120 SVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN 179
S + +L IW F++I V+ + ++ K I+
Sbjct: 384 SAHIPTILLSL-IW---FDVIKSDVMVVVN-----KLHKYSLVEKQPKESTISI-----P 429
Query: 180 DRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKF-------YF 217
YL + LHR+++ P + ++ YF
Sbjct: 430 SIYLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 34.5 bits (78), Expect = 0.028
Identities = 11/107 (10%), Positives = 30/107 (28%), Gaps = 10/107 (9%)
Query: 20 ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA 78
+ D I+ + + T ++ P + + + ++
Sbjct: 326 VSTVAVDGYFYIF--NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP 383
Query: 79 WSPSKSVWEEQPNKTIPNLY-TISALSWKRDGSRIACGGLCGSVELF 124
+ + + TI+A+ R + G GS+ +
Sbjct: 384 SRAA------FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.028
Identities = 40/247 (16%), Positives = 75/247 (30%), Gaps = 86/247 (34%)
Query: 32 YESDGRVHRIFDYTAPHYKER--------------EFTVACSSPSGQAV----------- 66
Y++ +++ H+K+ T+ G+ +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 67 -VVGSYDNIKLFA---WSPSKSVWEEQP---NKTI---PNLYTIS-AL--SWKRDGSRIA 113
V G K+F + + + + T P L + A K G A
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 114 CGGLCG-SV-E---L--------FESVLK----R-----------TIWKGKFEMIYVSPS 145
G S+ E L ES+++ R + + + MI ++P
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-----RYLVARTPDTLLLGDLHRNL 200
+V S E+ V + + ++ N +Y+ A GDL R L
Sbjct: 1816 RV-AASFSQEALQYVVERVGKRTGWLVEIV---NYNVENQQYVAA--------GDL-RAL 1862
Query: 201 --LSEVL 205
++ VL
Sbjct: 1863 DTVTNVL 1869
Score = 31.6 bits (71), Expect = 0.27
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 35/171 (20%)
Query: 3 VVQHPVPPYALS--WPAGYILAAGSDRIVTIYESDGRVHRIFD-----YTAPHYKEREFT 55
+ + P + S + A + G+ ++V I+ G F+ Y H +
Sbjct: 132 MAKRPFDKKSNSALFRA---VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL- 187
Query: 56 VACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISA-LSWKRDGSRIAC 114
+ S+ + ++ + D K+F + W E P+ T Y +S +S
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-------- 239
Query: 115 GGLCGSVEL--FESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES-KGRGVI 162
L G ++L + K G +P + L L G + +G++
Sbjct: 240 --LIGVIQLAHYVVTAKLL---G------FTPGE-LRSYLKGATGHSQGLV 278
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 33.3 bits (77), Expect = 0.062
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116
+P+G + D I++ W W + + + T+ ++W G+ +A
Sbjct: 25 NPAGTLLASCGGDRRIRI--WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Score = 30.2 bits (69), Expect = 0.54
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 60 SPSGQAVVVGSYDN-IKLFAW--------SPSKSVWEEQPNKTIPNL-----YTISALSW 105
PSGQ + S D +++ W + K I L TI ++W
Sbjct: 203 DPSGQRLASCSDDRTVRI--WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 106 KRDGSRIACGGLCGSVELFE 125
+ +A ++ +F+
Sbjct: 261 CQLTGALATACGDDAIRVFQ 280
Score = 29.5 bits (67), Expect = 1.2
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 11 YALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV 68
+ L+W PAG +LA+ DR + I+ ++G + ++ VA S P G +
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLAS 78
Query: 69 GSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGG 116
S+D + W ++ +E T+ + + +++W G+ +A
Sbjct: 79 ASFDATTCI--WKKNQDDFEC--VTTLEGHENEVKSVAWAPSGNLLATCS 124
Score = 28.3 bits (64), Expect = 2.5
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 16/64 (25%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL------YTISALSWKRDGSRI 112
PS + + SYD+ +KL + E+ + + T+ +L++ G R+
Sbjct: 159 HPSQELLASASYDDTVKL---------YREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 113 ACGG 116
A
Sbjct: 210 ASCS 213
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 33.4 bits (77), Expect = 0.068
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 27/114 (23%)
Query: 12 ALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS---SPSGQAVV 67
L W ++A +R V ++ G V + + Y S S G +
Sbjct: 98 LLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTY-------VASVKWSHDGSFLS 150
Query: 68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIACGG 116
VG + + + ++ + + + + LSW + ++ G
Sbjct: 151 VGLGNGLVDI---------YDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGS 193
Score = 31.8 bits (73), Expect = 0.19
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT--ISALSWKRDGSRIACGG 116
S VV + + + + W+ + + ++++ W DGS ++ G
Sbjct: 100 DWSNLNVVAVALERNVYV--WNADSG----SVSALAETDESTYVASVKWSHDGSFLSVGL 153
Query: 117 LCGSVEL 123
G V++
Sbjct: 154 GNGLVDI 160
Score = 30.3 bits (69), Expect = 0.65
Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 25/115 (21%)
Query: 11 YALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFT-----VACS---SPS 62
LSW ++L++GS G + D +++ V C
Sbjct: 180 GCLSW-NRHVLSSGSR--------SGAI-HHHDVRIANHQIGTLQGHSSEV-CGLAWRSD 228
Query: 63 GQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN-LYTISALSWKRDGSRIACGG 116
G + G DN + W S P T N + A++W S + G
Sbjct: 229 GLQLASGGNDN-VVQIWDARSS----IPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
Score = 26.8 bits (60), Expect = 8.8
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 31/118 (26%)
Query: 11 YALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFT-----VACSSPSGQ 64
++ W G L+ G +G V I+D + K R V C S +
Sbjct: 138 ASVKWSHDGSFLSVGLG--------NGLV-DIYDVESQT-KLRTMAGHQARVGCLSWNRH 187
Query: 65 AVVVGSYDN-IKLFAWSPSKSVWE-EQPNKTIPNLY----TISALSWKRDGSRIACGG 116
+ GS I + N I L + L+W+ DG ++A GG
Sbjct: 188 VLSSGSRSGAIHH---------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 33.0 bits (76), Expect = 0.080
Identities = 19/150 (12%), Positives = 36/150 (24%), Gaps = 49/150 (32%)
Query: 16 PAGYILAAGS--DRIVTIYE-SDGRVHRIFD-YTAPHYKEREFTVACS---SPSGQAVVV 68
G L + VT+YE R+ Y E +T A + + S + V
Sbjct: 31 KEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90
Query: 69 GSYDN-IKLF---------------------AWSPSKS-------------VWE---EQP 90
I++ + P +W +
Sbjct: 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150
Query: 91 NKTIPNLY----TISALSWKRDGSRIACGG 116
+ + + + G +I G
Sbjct: 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 54 FTVACS-SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI---PNLYTISALSWKRD 108
+ + S + + +G+ + + W + T+ I S+ RD
Sbjct: 289 WYMRFSMDFWQKMLALGNQVGKLYV--WDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346
Query: 109 GSRIACGG 116
S +
Sbjct: 347 SSILIAVC 354
Score = 29.2 bits (66), Expect = 1.2
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 16/80 (20%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISA-LSWKRD----- 108
V C G ++ S +N I W P K + K + TI + +
Sbjct: 234 VDCVRWLGDLILSKSCENAIVC--WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291
Query: 109 -------GSRIACGGLCGSV 121
+A G G +
Sbjct: 292 RFSMDFWQKMLALGNQVGKL 311
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 32.0 bits (72), Expect = 0.15
Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 21/119 (17%)
Query: 16 PAGYILAAGSDRIV-------------TIYESDGRVHRIFDYTAPHYKEREFTVACSSPS 62
+G + V T + ++ +F C + S
Sbjct: 295 HSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFEC-CWNGS 353
Query: 63 GQAVVVGSYDN-IKLF-AWSPSKSVWEEQPNKT-----IPNLYTISALSWKRDGSRIAC 114
V+ GSY+N ++F + E + ++ K+D +
Sbjct: 354 DSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412
Score = 31.3 bits (70), Expect = 0.35
Identities = 22/203 (10%), Positives = 52/203 (25%), Gaps = 23/203 (11%)
Query: 2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
R + + + + + + + H +
Sbjct: 130 RPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH--TYHINSISINS 187
Query: 62 SGQAVVVGSYDNIKLFAWS-----PSKSVWEEQPNKTIPNLYTISALSW-KRDGSRIACG 115
+ + I L W S ++ + +P I+A + +
Sbjct: 188 DYETYLSADDLRINL--WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245
Query: 116 GLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA 175
G++ L + M + K S+ I+DV
Sbjct: 246 SSKGTIRLCD-------------MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292
Query: 176 IMGNDRYLVARTPDTLLLGDLHR 198
+ RY++ R ++ + DL+
Sbjct: 293 FSHSGRYMMTRDYLSVKVWDLNM 315
Score = 29.0 bits (64), Expect = 1.5
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 26/132 (19%)
Query: 18 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACS--------------SPSG 63
S + TI D R + D + ++E E S S SG
Sbjct: 239 CNTFVYSSSK-GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297
Query: 64 QAVVVGSYDNIKLFAWSPSKSVWE-----EQPNKTIPNLYTISAL------SWKRDGSRI 112
+ ++ Y ++K++ + E E + +LY + W S +
Sbjct: 298 RYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357
Query: 113 ACGGLCGSVELF 124
G +F
Sbjct: 358 MTGSYNNFFRMF 369
Score = 28.2 bits (62), Expect = 3.0
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 99 TISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF 137
IS + + G +A G G V +F+ + I
Sbjct: 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR 68
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 31.7 bits (73), Expect = 0.16
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 16 PAGYILAAGSDRIVTIYESDGR--VHRIFDYTAPHYKEREFTVACS--SPSGQAVVVGSY 71
P Y LAA + + ++ D + V + A + K E S GQ + G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 72 DN-IKL 76
DN I++
Sbjct: 307 DNVIRV 312
Score = 29.8 bits (68), Expect = 0.75
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 60 SPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN---LYTISALSWKRDGSRIACGG 116
SP+ + + IK+F+ P V + +P + +L+W DG + G
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 31.9 bits (73), Expect = 0.19
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 16/79 (20%)
Query: 54 FTVACSSPSGQAVVVGSYDN-IKL-----------FAWSPSKSVWEEQPNKTIPNL---- 97
+ + + G ++ +L W + P +
Sbjct: 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT 108
Query: 98 YTISALSWKRDGSRIACGG 116
++ L+W DG+ I G
Sbjct: 109 NQVTCLAWSHDGNSIVTGV 127
Score = 27.6 bits (62), Expect = 4.7
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 38/124 (30%)
Query: 18 GYILAAGSD----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACS-------------S 60
ILA G R+ I E+D + + T F ++ S S
Sbjct: 58 ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117
Query: 61 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWKRDGSRI 112
G ++V G + ++L W NKT L I ++ W +DG+ I
Sbjct: 118 HDGNSIVTGVENGELRL--W-----------NKTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 113 ACGG 116
Sbjct: 165 ISMD 168
Score = 26.8 bits (60), Expect = 8.7
Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 22/120 (18%)
Query: 11 YALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV 68
L+W G + G + + ++ G + + ++ H + +V + G ++
Sbjct: 112 TCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF---H-RAPIVSVKWN-KDGTHIIS 166
Query: 69 GSYDN-IKLFAWSPS----KSVWEEQPNKTI--------PNLYTISALSWKRDGSRIACG 115
+N L W+ +E + + + W D + G
Sbjct: 167 MDVENVTIL--WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 31.5 bits (72), Expect = 0.20
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 23/137 (16%)
Query: 18 GYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKERE---------FTVACS--SPSGQ 64
G LA D I+ +Y+ + R + T+ F ++ S +
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE 183
Query: 65 AVVVGSYDN-IKLFAW-SPSKSVWEEQPNKTIPNLYTISALSW----KRDGSRIACGGLC 118
+ V + + I + +L I ++SW R IA G
Sbjct: 184 KLAVSALEQAIIY--QRGKDGKLHVAAKLPGHKSL--IRSISWAPSIGRWYQLIATGCKD 239
Query: 119 GSVELFESVLKRTIWKG 135
G + +F+ K +
Sbjct: 240 GRIRIFKITEKLSPLAS 256
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 31.0 bits (71), Expect = 0.33
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 16 PAGYILAAGSDRIVTIY--ESDGRVHRIFDYTAPHYKEREFT--------VACSSPSGQA 65
P +A G+D+ V I+ + + P K +A + G+
Sbjct: 265 PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW-NALGKK 323
Query: 66 VVVGSYDN-IKL 76
+ G D I+
Sbjct: 324 LFAGFTDGVIRT 335
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 30.9 bits (70), Expect = 0.36
Identities = 21/176 (11%), Positives = 55/176 (31%), Gaps = 26/176 (14%)
Query: 58 CSSPSGQAVVVGSYDN-IKLFAW-----SPSKSVWEEQPNKTIPNLYTISALSWKRDGSR 111
C +++G+ I + W +S W + I ++ ++
Sbjct: 221 CIDEECCVLILGTTRGIIDI--WDIRFNVLIRS-WSFGDHAPITHVEVCQFYG--KNSVI 275
Query: 112 IACGGLCGSVELFE---SVLKRTIW--KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ 166
+ G + ++ + + M + P + ++ L+ L +
Sbjct: 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335
Query: 167 YGYEITDVAIMGNDRYLVARTPD-TLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVT 221
ND+ L+ ++++ L+ S+ + S ++ F VT
Sbjct: 336 SVS---------NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382
Score = 30.1 bits (68), Expect = 0.73
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEE--QPNKTIPNLYTISALSWKRDGSRI 112
A S ++ GS IK+ W+ + + E + T T++ ++ +
Sbjct: 69 SAVSPGETPYLITGSDQGVIKI--WNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF 126
Query: 113 ACGGLCGSVELF 124
A G + +
Sbjct: 127 AVSSKDGQIIVL 138
Score = 28.6 bits (64), Expect = 2.1
Identities = 13/126 (10%), Positives = 37/126 (29%), Gaps = 24/126 (19%)
Query: 16 PAGYILAAGSD-------RIVTIYESD----GRVHRIFDYTAPHYKEREFTV---ACSSP 61
P A S ++ + I ++ + E+ V A +
Sbjct: 121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180
Query: 62 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY---TISALSWKRDGSRIACGGL 117
+V + + + + + + + I N +S++ + + G
Sbjct: 181 EKSLLVALTNLSRVII--FDIRTL----ERLQIIENSPRHGAVSSICIDEECCVLILGTT 234
Query: 118 CGSVEL 123
G +++
Sbjct: 235 RGIIDI 240
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 30.6 bits (70), Expect = 0.48
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 16 PAGYILAAGSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACS----SPSGQAVVVGS 70
P Y L A + + I++ + + + C+ S GQ + G
Sbjct: 266 PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 71 YDN-IKL 76
DN +++
Sbjct: 326 TDNLVRV 332
Score = 26.7 bits (60), Expect = 7.4
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 60 SPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIACG 115
SP+ + + +IK++ V E + + ++L+W DG + G
Sbjct: 265 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 30.8 bits (70), Expect = 0.49
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 16/77 (20%)
Query: 16 PAGYILAAGSDR-----------IVTIYESDGRVHRIFDYTAPHYKEREFTVACS----S 60
P Y L A ++ IV + D + + + + C+ S
Sbjct: 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 61 PSGQAVVVGSYDN-IKL 76
G + G D I++
Sbjct: 672 ADGSTLFSGYTDGVIRV 688
Score = 27.7 bits (62), Expect = 4.9
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 60 SPSGQAVVVGSYDNIKLF--------------AWSPSKSVWEEQPNKTIPNLYTISALSW 105
SP+ + + IK++ + ++ P T + ++L+W
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670
Query: 106 KRDGSRIACG 115
DGS + G
Sbjct: 671 SADGSTLFSG 680
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 30.4 bits (69), Expect = 0.58
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 6 HPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG 63
+ +L + ++ G V + DG+ H K++ VA + P
Sbjct: 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR---MH-KKKVTHVALN-PCC 262
Query: 64 QAVVV-GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 115
+ S D +K+ W + + ++P+ + ++A + DG+R+
Sbjct: 263 DWFLATASVDQTVKI--WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Score = 29.7 bits (67), Expect = 1.0
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 17/116 (14%)
Query: 16 PAGYILAAGS-DRIVTIYE-SDGRVHRIFD-YTAPHYKEREFTVACSSPSGQAVVVGSYD 72
P G L + +Y S + H++ A P +VVG Y
Sbjct: 306 PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP 365
Query: 73 NIKLFAWSPSKS----VWEEQPNKTIPNL--------YTISALSWKRDGSRIACGG 116
+ + +P + V++ K + L +++ + G +A
Sbjct: 366 DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFN--PMGDTLASAM 419
Score = 28.9 bits (65), Expect = 1.6
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 20 ILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL 76
LA S D+ V I++ R F Y+ PH AC SP G ++ + I++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPH--RHPVNAACFSPDGARLLTTDQKSEIRV 322
Query: 77 FAWSPS----KSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 115
+S S P++ +L I A +W + I G
Sbjct: 323 --YSASQWDCPLGLIPHPHRHFQHLTPIKA-AWHPRYNLIVVG 362
Score = 27.0 bits (60), Expect = 6.3
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 18 GYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IK 75
A S + + + G + R+F + F S S + VV G +
Sbjct: 177 TNQFYASSMEGTTRLQDFKGNILRVF--ASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234
Query: 76 L 76
L
Sbjct: 235 L 235
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 30.1 bits (68), Expect = 0.76
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 41/131 (31%)
Query: 16 PAGYILAAGSD----RIVTIYE-SDGRVHRIFDYTAPHYKERE---------FTVACSSP 61
P G +LA D +T+YE G + +++ +
Sbjct: 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-D 301
Query: 62 SGQAVVVGSYDN-IKLFAWSP------------SKSVWEEQPNKTIPNLYTISALSWKRD 108
SG+ + +D ++ W + E+ L+
Sbjct: 302 SGETLCSAGWDGKLRF--WDVKTKERITTLNMHCDDIEIEE-----------DILAVDEH 348
Query: 109 GSRIACGGLCG 119
G +A G+
Sbjct: 349 GDSLAEPGVFD 359
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 57 ACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTIS--ALSW-----KRDG 109
S + D K V E+ + ++ S AL W +
Sbjct: 87 TSFSGDLLFYRITREDET--------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138
Query: 110 SRIACGGLCGSVEL 123
R+ + G+ +
Sbjct: 139 HRLVATDVKGTTYI 152
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 29.8 bits (68), Expect = 0.78
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 15/69 (21%)
Query: 55 TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWK 106
A + PSG A+ G DN + + + ++ + +SA S+
Sbjct: 111 ACAYA-PSGCAIACGGLDNKCSV--Y----PLTFDKNENMAAKKKSVAMHTNYLSACSFT 163
Query: 107 RDGSRIACG 115
+I
Sbjct: 164 NSDMQILTA 172
Score = 27.5 bits (62), Expect = 4.9
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 60 SPSGQAVVVGSYDN-IKLF 77
PSG A GS D +L+
Sbjct: 249 YPSGDAFASGSDDATCRLY 267
Score = 26.7 bits (60), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWS 80
SP G A GS+D+ +++ W+
Sbjct: 335 SPDGTAFCSGSWDHTLRV--WA 354
Score = 26.7 bits (60), Expect = 8.8
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 31/114 (27%)
Query: 16 PAGYILAAGSDRIVTIYESDGRVHRIFDYTA--------PHYKEREFTVACSSPSGQAVV 67
P+G A+GSD D R++D A + S SG+ +
Sbjct: 250 PSGDAFASGSD--------DATC-RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIACGG 116
G D I + W+ + L+ +S L DG+ G
Sbjct: 301 AGYNDYTINV---------WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Score = 26.4 bits (59), Expect = 9.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIAC 114
+ +V S D + + W+ + + A ++ G IAC
Sbjct: 73 CKDKRRIVSSSQDGKVIV---------WDSFTTNKEHAVTMPCTWVMACAYAPSGCAIAC 123
Query: 115 GGL 117
GGL
Sbjct: 124 GGL 126
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 29.5 bits (67), Expect = 0.99
Identities = 6/65 (9%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 16 PAGYILAAGS-DRIVTI--YESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72
G + AG ++T+ S + ++ + ++ + + G +
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPS----KFTCSCNSLTVDGNNANYIYAGYEN 312
Query: 73 N-IKL 76
+
Sbjct: 313 GMLAQ 317
Score = 29.5 bits (67), Expect = 1.00
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 51 EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV--WEEQPNKTIPNLYTISAL---SW 105
+ TVA +AV+ + +N F + K++ +E + N + A ++
Sbjct: 5 TKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTF 64
Query: 106 KRDGSRIACGGLCGSVELFE 125
++ GS + L G LF
Sbjct: 65 EKVGSHLYKARLDGHDFLFN 84
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 29.5 bits (67), Expect = 1.1
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 16 PAGYILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVACS------------SP 61
G LA G ++ +Y SDG V R+ D +A + + S SP
Sbjct: 74 NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133
Query: 62 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIACG 115
G+ + G+ D I++ W+ + K + L I +L + G ++ G
Sbjct: 134 DGKFLATGAEDRLIRI---------WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Score = 28.0 bits (63), Expect = 3.1
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYT-------ISALSWKRDGSR 111
+ GQ+VV GS D +KL+ + + + + + T + +++ ++
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 112 IACG 115
I G
Sbjct: 325 ILSG 328
Score = 27.2 bits (61), Expect = 5.8
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 24/132 (18%)
Query: 5 QHPVPPYALSWPAGYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS--- 59
P+PP+ L + + Y + + R D + V C
Sbjct: 15 SKPIPPFLLD-LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV-CCVKF 72
Query: 60 SPSGQAVVVGSYDNIKLFAWSP------------SKSVWEEQPNKTIPNL---YTISALS 104
S G+ + G ++ + S + + + T + I ++
Sbjct: 73 SNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 105 WKRDGSRIACGG 116
+ DG +A G
Sbjct: 131 FSPDGKFLATGA 142
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 29.2 bits (66), Expect = 1.2
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 22/122 (18%)
Query: 16 PAGYILAAGS-DRIVTIY--ESDGRVHRIFDYTAPHYKEREFTVACS---SPSGQAVVVG 69
+ GS D V ++ + K +TVA + + V G
Sbjct: 127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186
Query: 70 SYDN-IKLFAWSPSKSVWEEQPNKTIPNL---YTISALSWKRDG---SRIACGGLCGSVE 122
+ IKL ++ + + +L + R +++ L G
Sbjct: 187 YDNGDIKL---------FDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237
Query: 123 LF 124
+F
Sbjct: 238 VF 239
Score = 29.2 bits (66), Expect = 1.3
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 13/122 (10%)
Query: 6 HPVPPYALSW-PAGYILAAG-----SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACS 59
+ W P ++ +YE ++ + T +
Sbjct: 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGAT 76
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQP----NKTIPNLYTISALSWKRDGSRIAC 114
S + + G + + + W+ + I + I L I
Sbjct: 77 SLQQRYLATGDFGGNLHI--WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 115 GG 116
G
Sbjct: 135 GS 136
Score = 27.7 bits (62), Expect = 3.8
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 16/129 (12%)
Query: 8 VPPYALSWPAGYILAAGS-DRIVTIYESDGRVHRIFDYTAPH----YKEREFTVACSSPS 62
A S LA G + I+ + ++ H
Sbjct: 71 GTFGATS-LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEG 128
Query: 63 GQAVVVGSYDN-IKLFAW------SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG 115
+V GS D +K+ W P ++ Q ++ ++ + G
Sbjct: 129 APEIVTGSRDGTVKV--WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186
Query: 116 GLCGSVELF 124
G ++LF
Sbjct: 187 YDNGDIKLF 195
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 29.1 bits (66), Expect = 1.4
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIAC 114
P + GS+D+ + + W+ +S + + + ++W DG +A
Sbjct: 67 RPHTSLLAAGSFDSTVSI--WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 115 GG 116
Sbjct: 125 CS 126
Score = 28.3 bits (64), Expect = 2.3
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIAC 114
S + GS D IKL S + I +++W+ S +A
Sbjct: 21 DFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLD---ETAHKKAIRSVAWRPHTSLLAA 75
Query: 115 GG 116
G
Sbjct: 76 GS 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 29.0 bits (66), Expect = 1.5
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 14/65 (21%)
Query: 57 ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSR 111
+ V S D ++L W + +Y ++++ + +
Sbjct: 23 DVVAVDDSKVASVSRDGTVRL---------WSKDDQWLGTVVYTGQGFLNSVCYDSEKEL 73
Query: 112 IACGG 116
+ GG
Sbjct: 74 LLFGG 78
Score = 27.5 bits (62), Expect = 4.2
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 54 FTVACSSPSGQAVVVGSYDN-IKL 76
+ S S + S D IKL
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKL 169
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping,
cell membrane, cell outer membrane, cell projection,
fimbrium, membrane; 2.85A {Yersinia pestis}
Length = 90
Score = 27.3 bits (61), Expect = 1.8
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 1 GRVV-QHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY 49
G V VP + + V I+ESDG +T P+
Sbjct: 35 GYTVSNELVPSGPFELANLPLGGGSGELKVIIHESDGTKQV---FTVPYD 81
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 28.8 bits (64), Expect = 2.1
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 18 GYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPH-----------YKEREFTVACSSPSGQ 64
G +L S D V++ E + A H E + +
Sbjct: 113 GPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 65 AVVVGSYDN-IKLFAWSPSKSVWEE 88
V G DN +K++ ++ +
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVL 196
Score = 28.4 bits (63), Expect = 2.9
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 14 SWPAGYILAAGSD----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 69
+ LA+ S I T G + + + + S SG + +
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWS-LSGNVLALS 272
Query: 70 SYDN-IKLFAWSPS 82
DN + L W +
Sbjct: 273 GGDNKVTL--WKEN 284
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 28.5 bits (64), Expect = 2.2
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 60 SPSGQAVVV-GSYDN-IKLFAWSPSKSVWEEQPNKTIPNL---YTISALSWKRDGSRIAC 114
P+ Q V++ DN I + W V T+ TI ++ W RDG+ I
Sbjct: 140 HPTAQNVLLSAGCDNVILV--WD----VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193
Query: 115 G 115
Sbjct: 194 S 194
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 28.7 bits (63), Expect = 2.3
Identities = 15/145 (10%), Positives = 36/145 (24%), Gaps = 23/145 (15%)
Query: 2 RVVQHPVPPYALSW-PAGYILAAGS-DRIVTIYESDGRVHRIF-----DYTAPHYKEREF 54
V P ++ + + G + + +Y+ D F ++ R
Sbjct: 93 TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152
Query: 55 TVAC--SSPSGQAVVVGSYDN------------IKLFAWS--PSKSVWEEQPNKTIPNLY 98
+ +P V+ SY+ + F + P +
Sbjct: 153 PIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212
Query: 99 TISALSWKRDGSRIACGGLCGSVEL 123
+ + + I S+
Sbjct: 213 KVIQSLYHPNSLHIITIHEDNSLVF 237
Score = 27.9 bits (61), Expect = 4.3
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 58 CSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI--------PNLYTISALSWKRD 108
+ G A + G + +++ + S ++ + + + +S+ +
Sbjct: 442 LPAEYGTAFITGHSNGSVRI--YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE 499
Query: 109 GSRIACGGLCGSVELFE 125
+A G V LF+
Sbjct: 500 TLELAVSIETGDVVLFK 516
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 28.3 bits (64), Expect = 2.5
Identities = 0/111 (0%), Positives = 0/111 (0%), Gaps = 16/111 (14%)
Query: 16 PAGYILAAGS-DRIVTIY--ESDGRVHRIFDYTAPHYKEREFTVACS-SPSGQAVVVGSY 71
PA + + +AP
Sbjct: 259 PAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPTPNWGE 318
Query: 72 DN-IKLFAWSPSKSVWEEQPNKTIPNLYT-----ISALSWKRDGSRIACGG 116
Sbjct: 319 ------ 363
Score = 27.9 bits (63), Expect = 3.1
Identities = 5/67 (7%), Positives = 11/67 (16%), Gaps = 9/67 (13%)
Query: 55 TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDG 109
T S + + P K + +
Sbjct: 113 TNQLQ-TSFSEPRLLILTDPRTD--HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169
Query: 110 -SRIACG 115
+ + G
Sbjct: 170 KGKQSIG 176
Score = 27.2 bits (61), Expect = 5.2
Identities = 0/71 (0%), Positives = 8/71 (11%), Gaps = 7/71 (9%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIA 113
+ + + + + + + +
Sbjct: 211 PEEAKEQEEEEAALVAPDYGAV--AEYAAP---AADTWGGEWGTDAAAQPAAIPAQAGAD 265
Query: 114 CGGLCGSVELF 124
Sbjct: 266 WTAAPAPAAGG 276
Score = 26.4 bits (59), Expect = 9.2
Identities = 4/60 (6%), Positives = 7/60 (11%), Gaps = 8/60 (13%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGL 117
Y L + + + S L
Sbjct: 75 PQDIIVQSARPYGQRAVL--KF----AQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 95
Score = 26.7 bits (59), Expect = 2.7
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 24 GSDRIVTIYESDGRVHRIFDYTAP-HYKEREFTVACSSPSGQAVVVGSYDN 73
GS + + +G + FD P ++ E T PSG+ DN
Sbjct: 1 GSSGSSGVSDMNGLGFKPFDLVIPFAVRKGEITGEVHMPSGKTATPEIVDN 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 28.2 bits (64), Expect = 2.9
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 60 SPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116
S + V G +K++ S + + I + DG + GG
Sbjct: 60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Score = 27.1 bits (61), Expect = 5.6
Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 16 PAGYILAAGSDRIVTIY--ESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN 73
+ G V ++ G + + + P G ++VG +
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEAS 119
Query: 74 -IKL 76
+ +
Sbjct: 120 TLSI 123
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 28.1 bits (63), Expect = 3.1
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 18 GYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPH-----------YKEREFTVACSSPSGQ 64
G +L S D V++ E + A H E + +
Sbjct: 115 GPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESR 173
Query: 65 AVVVGSYDN-IKLFAWSPSKSVWEE 88
V G DN +K++ ++ +
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVL 198
Score = 27.3 bits (61), Expect = 5.1
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 14 SWPAGYILAAGSD----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 69
+ LA+ S I T G + + + + S SG + +
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWS-LSGNVLALS 274
Query: 70 SYDN-IKLF 77
DN + L+
Sbjct: 275 GGDNKVTLW 283
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 28.0 bits (63), Expect = 3.3
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 18 GYILAAGS-DRIVTIYE-SDGRVHRIFDYTAPH-----------YKEREFTVACSSPSGQ 64
G +L S D V++ E + A H E + +
Sbjct: 113 GPMLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 65 AVVVGSYDN-IKLFAWSPSKSVWEE 88
V G DN +K++ ++ +
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVL 196
Score = 26.4 bits (59), Expect = 9.0
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 14 SWPAGYILAAGSD----RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG 69
+ +A+ S I T G + + + + S SG + +
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWS-LSGNVLALS 272
Query: 70 SYDN-IKL 76
DN + L
Sbjct: 273 GGDNKVTL 280
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 27.7 bits (62), Expect = 4.0
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN 73
G +L SD V ++ +G + R D + K+ + S +G+ V++ + ++
Sbjct: 442 GALLGVKSDGFVYFFDWDNGTLVRRIDV---NAKDVIW-----SDNGELVMIVNTNS 490
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 27.5 bits (62), Expect = 4.1
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGL 117
+ ++ S D + + W + IP + ++ G+ +ACGGL
Sbjct: 64 GTDSRLLLSASQDGKLII--WD----SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Score = 26.7 bits (60), Expect = 8.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 55 TVACSSPSGQAVVVGSYDN-IKL 76
T A + PSG V G DN +
Sbjct: 102 TCAYA-PSGNYVACGGLDNICSI 123
Score = 26.7 bits (60), Expect = 8.2
Identities = 25/114 (21%), Positives = 33/114 (28%), Gaps = 31/114 (27%)
Query: 16 PAGYILAAGSDRIVTIYESDGRVHRIFDYTA--------PHYKEREFTVACSSPSGQAVV 67
P G A GSD D R+FD A T S SG+ ++
Sbjct: 236 PNGNAFATGSD--------DATC-RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIACGG 116
G D + W+ L +S L DG +A G
Sbjct: 287 AGYDDFNCNV---------WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 26.7 bits (60), Expect = 8.8
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP---NLYTISALSWKRDGSRIACG 115
P+G A GS D +L + Q T + I+++S+ + G + G
Sbjct: 235 FPNGNAFATGSDDATCRL--FDLRAD----QELMTYSHDNIICGITSVSFSKSGRLLLAG 288
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 27.2 bits (61), Expect = 5.2
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLY----TISALSWKRDGSRIAC 114
SG+ + S D IKL W+ Q + I ++ +S++S +G I
Sbjct: 159 DHSGKLLASCSADMTIKL---------WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 209
Query: 115 G 115
Sbjct: 210 A 210
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 26.9 bits (60), Expect = 6.3
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 8/34 (23%)
Query: 27 RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
R +Y + I + F V +
Sbjct: 151 RTRKVYYIE-----ILEIDGRDV---LFRVGVEA 176
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 27.3 bits (61), Expect = 6.3
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWS 80
V C Q +V G DN IK+ W
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKI--WD 159
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 26.8 bits (60), Expect = 7.0
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 20/71 (28%)
Query: 18 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTV----------ACSSPSGQAVV 67
+A+ S DGRV I+ + S + +
Sbjct: 228 TSTIASCSQ--------DGRV-FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILA 278
Query: 68 VGSYDN-IKLF 77
V DN + L+
Sbjct: 279 VSGGDNKVTLW 289
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer,
replication, signaling protein; HET: DNA MSE; 2.10A
{Escherichia coli} SCOP: d.292.1.1
Length = 188
Score = 26.6 bits (59), Expect = 7.3
Identities = 2/20 (10%), Positives = 5/20 (25%)
Query: 179 NDRYLVARTPDTLLLGDLHR 198
+ + + L L
Sbjct: 16 HSDCALLERDGNISLLSLPV 35
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 27.1 bits (59), Expect = 7.6
Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 12/158 (7%)
Query: 97 LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES 156
+ ++ ++ R G + L R + F + + +
Sbjct: 559 VARLAGINITRTIYD-------GQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKR 611
Query: 157 KGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFY 216
+ + E D G ++VL P SG F+
Sbjct: 612 PAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGAKVLDPTSG----FH 667
Query: 217 FDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDSSEV 254
+ V V F + SII+ N T + +
Sbjct: 668 VNPV-VVFDFASLYPSIIQAHNLCFSTLSLRADAVAHL 704
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB;
retinoblastoma protein, E2F displacement, transcription
repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3
PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B
1o9k_B
Length = 347
Score = 26.9 bits (59), Expect = 7.8
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 15/66 (22%)
Query: 77 FAWSPSKSVWEEQPNKTIPNLYTISA---------LSWKRDGSRIACGGLCGSVELFESV 127
AW +++ + S L++ R LC +
Sbjct: 182 LAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLR------LNTLCERLLSEHPE 235
Query: 128 LKRTIW 133
L+ IW
Sbjct: 236 LEHIIW 241
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 26.8 bits (60), Expect = 8.0
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 56 VACSSPSGQAVVVGSYDN-IKLFAWS 80
+ C V+ G+ D I++ +
Sbjct: 125 ITCLQFEDNYVITGADDKMIRV--YD 148
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 26.7 bits (60), Expect = 8.6
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 60 SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL----YTISALSWKRDGSRIAC 114
SP Q + G++ + + + + K +L I ++++ DG +A
Sbjct: 131 SPDSQYLATGTHVGKVNI---------FGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181
Query: 115 GGLCGSVELF 124
G + G + +F
Sbjct: 182 GAIDGIINIF 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.421
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,017,035
Number of extensions: 236773
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 197
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)