BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12789
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 76/188 (40%), Gaps = 37/188 (19%)
Query: 269 NDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGK-CDCIDGYEGTDCSKSVCPVLCS 327
N +KT + + K + + CP GC G C + C+C DG+ G C K++C C
Sbjct: 131 NTILKTPQNAIFFKTCQ--QAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCM 188
Query: 328 NHGK-YGGGICHCENGWKGPECD-------------------------IPASDCQYSD-- 359
N G G C C G+ G CD + C+ S
Sbjct: 189 NGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCP 248
Query: 360 --CSGHGSCV-EGTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVD 416
C G C+ + C C G++G C + C C HGTC +E +C C EGW G
Sbjct: 249 QPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTC---HEPNKCQCQEGWHGRH 305
Query: 417 CNIKLEMS 424
CN + E S
Sbjct: 306 CNKRYEAS 313
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Query: 317 CSKSVCPVLCSNHGKYG-GGICHCENGWKGPECDIPASDCQYSDCSGHGSCVE-GTCHCQ 374
C ++ CP C N G IC C +G+ GP C+ C G CV G C C
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCT---PRCMNGGLCVTPGFCICP 202
Query: 375 SGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCNI-KLEMSCXXXXXXXX 433
G+ G+ C +A C C GTC + +C+C G G C I K C
Sbjct: 203 PGFYGVNCDKANCSTTCFNGGTCFYPG---KCICPPGLEGEQCEISKCPQPCRNGGKCIG 259
Query: 434 XXXXXCS---DSDCCSQPVC 450
CS D CS+PVC
Sbjct: 260 KSKCKCSKGYQGDLCSKPVC 279
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 308 CIDGYEGTDCSKSVCPVLCS-NHGKYG-GGICHCENGWKGPECD--IPASDCQYSDCSGH 363
C++G+ G +C++++C CS HG G C C+ GW+G CD IP C H
Sbjct: 54 CMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCV------H 107
Query: 364 GSCVE-GTCHCQSGWKGIGCQE----AGCPNACNRHGTCAFEN-EEYQCVCAEGWAGVDC 417
G C E C C++ W G C + G C GTC+ ++YQC C EG++G +C
Sbjct: 108 GICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Query: 418 NI 419
I
Sbjct: 168 EI 169
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 27/106 (25%)
Query: 294 GCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGGICHCENGWKGPECDIPAS 353
G G G C+ GKC C G+EG+ C CE +G C P
Sbjct: 528 GGPGRGLCFCGKCRCHPGFEGS--------------------ACQCERTTEG--CLNP-- 563
Query: 354 DCQYSDCSGHGSCVEGTCHCQSGWKGIGCQEA-GCPNACNRHGTCA 398
+ +CSG G C C C SG++ CQE GCP+ C ++ +CA
Sbjct: 564 --RRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCA 607
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 325 LCSNHGKYGGGICHCENGWKGPECDIPA---------SDCQYSD----CSGHGSCVEGTC 371
LC G GIC C+ G+ G C+ C+ + CSG G CV G C
Sbjct: 436 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC 495
Query: 372 HCQS 375
C +
Sbjct: 496 LCHT 499
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 295 CSGHGSCYLGKCDCIDGYEGT------DCSKSVCPV----LCSNHGKYGGGICHCENGWK 344
CS G C G+C C G +C C +CS HG+ G C C++ W
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWT 554
Query: 345 GPECD--IPASDCQYSD---CSGHGSCVEGTCHC-QSGWKGIGCQEA-GCPNACNRHGTC 397
G C+ C S+ CSG G C G+C C Q G G C++ CP+AC C
Sbjct: 555 GYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 614
Query: 398 A----FENEEY 404
F+ E Y
Sbjct: 615 VECKKFDREPY 625
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 326 CSN-HGKYGGGICHCENGWKGPECDIPASDCQYSD------------CSGHGSCVEGTCH 372
C+N +G + G+C C GW G +C+ D + S CS G C+ G C
Sbjct: 448 CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCV 507
Query: 373 CQSG------WKGIGCQEAGCPN----ACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C S K C + C C+ HG C+ + C+C W G CN
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCN 559
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCV----EGTCHCQSGWKGIGCQ---EAGCPN 389
C C G+ GP C+I ++C + C +C+ E C C G++G+ C+ + +
Sbjct: 30 CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 89
Query: 390 ACNRHGTCAFENEEYQCVCAEGWAGVDCNIKL 421
C +G C + E+QC C G+ G C + L
Sbjct: 90 PCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEGT----CHCQSGWKGIGCQ---EAGCPNACNRHGTCAF 399
EC + A+ C+++ G C+ C C G+ G C+ N C TC
Sbjct: 7 ECSLGANPCEHA-----GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 400 ENEEYQCVCAEGWAGVDCNIKLE 422
+ E+QC+C G+ GV C + +
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNTD 84
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 293 NGCSGHGSCY--LG--KCDCIDGYEGTDCSKSVCPVL---CSNHG----KYGGGICHCEN 341
N C G C LG +C C+ GY G C V + C N + G C C
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 72
Query: 342 GWKGPECDIPASDCQYSDCSGHGSCV----EGTCHCQSGWKGIGCQ 383
G++G C++ +C S C +G C+ E C C +G+ G CQ
Sbjct: 73 GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 295 CSGHGSCYLGKCDCIDGYEGT------DCSKSVCPV----LCSNHGKYGGGICHCENGWK 344
CS G C G+C C G +C C +CS HG+ G C C++ W
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWT 554
Query: 345 GPECD--IPASDCQYSD---CSGHGSCVEGTCHC-QSGWKGIGCQEA-GCPNACNRHGTC 397
G C+ C S+ CSG G C G+C C Q G G C++ CP+AC C
Sbjct: 555 GYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 614
Query: 398 A 398
Sbjct: 615 V 615
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 326 CSN-HGKYGGGICHCENGWKGPECDIPASDCQYSD------------CSGHGSCVEGTCH 372
C+N +G + G+C C GW G +C+ D + S CS G C+ G C
Sbjct: 448 CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCV 507
Query: 373 CQSG------WKGIGCQEAGCPN----ACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C S K C + C C+ HG C+ + C+C W G CN
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCN 559
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 295 CSGHGSCYLGKCDCIDGYEGT------DCSKSVCPV----LCSNHGKYGGGICHCENGWK 344
CS G C G+C C G +C C +CS HG+ G C C++ W
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWT 554
Query: 345 GPECD--IPASDCQYSD---CSGHGSCVEGTCHC-QSGWKGIGCQEA-GCPNACNRHGTC 397
G C+ C S+ CSG G C G+C C Q G G C++ CP+AC C
Sbjct: 555 GYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 614
Query: 398 A 398
Sbjct: 615 V 615
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 326 CSN-HGKYGGGICHCENGWKGPECDIPASDCQYSD------------CSGHGSCVEGTCH 372
C+N +G + G+C C GW G +C+ D + S CS G C+ G C
Sbjct: 448 CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCV 507
Query: 373 CQSG------WKGIGCQEAGCPN----ACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C S K C + C C+ HG C+ + C+C W G CN
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCN 559
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 295 CSGHGSCYLGKCDCIDGYEGT------DCSKSVCPV----LCSNHGKYGGGICHCENGWK 344
CS G C G+C C G +C C +CS HG+ G C C++ W
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWT 554
Query: 345 GPECD--IPASDCQYSD---CSGHGSCVEGTCHC-QSGWKGIGCQEA-GCPNACNRHGTC 397
G C+ C S+ CSG G C G+C C Q G G C++ CP+AC C
Sbjct: 555 GYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 614
Query: 398 A 398
Sbjct: 615 V 615
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 326 CSN-HGKYGGGICHCENGWKGPECDIPASDCQYSD------------CSGHGSCVEGTCH 372
C+N +G + G+C C GW G +C+ D + S CS G C+ G C
Sbjct: 448 CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCV 507
Query: 373 CQSG------WKGIGCQEAGCPN----ACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C S K C + C C+ HG C+ + C+C W G CN
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCN 559
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 295 CSGHGSCYLGKCDCIDGYEGT------DCSKSVCPV----LCSNHGKYGGGICHCENGWK 344
CS G C G+C C G +C C +CS HG+ G C C++ W
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWT 554
Query: 345 GPECD--IPASDCQYSD---CSGHGSCVEGTCHC-QSGWKGIGCQEA-GCPNACNRHGTC 397
G C+ C S+ CSG G C G+C C Q G G C++ CP+AC C
Sbjct: 555 GYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 614
Query: 398 A 398
Sbjct: 615 V 615
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 326 CSN-HGKYGGGICHCENGWKGPECDIPASDCQYSD------------CSGHGSCVEGTCH 372
C+N +G + G+C C GW G +C+ D + S CS G C+ G C
Sbjct: 448 CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCV 507
Query: 373 CQSG------WKGIGCQEAGCPN----ACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
C S K C + C C+ HG C+ + C+C W G CN
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCN 559
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 369 GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
G C C GW+G C+ A C AC G C N +C+C +G+ G C
Sbjct: 429 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQC 474
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 276 EIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGG 335
E + ++ A+ ++S C C GKC C G+EG C + C C + GG
Sbjct: 401 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRH-----GG 455
Query: 336 I------CHCENGWKGPECD 349
+ C C+ G+ GP+C+
Sbjct: 456 VCVRPNKCLCKKGYLGPQCE 475
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 32/126 (25%)
Query: 293 NGCSGHGSCY--LGKCDCIDGYEGTDCSKS--------VCPVLCSNH-----------GK 331
C +G C+ G+C C G+ G C K+ C CS
Sbjct: 203 TACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDP 262
Query: 332 YGGGICHCENGWKGPECDIPASDCQYS-DCSGHGSCVEGT-------CHCQSGWKGIGCQ 383
YG C C GWKG +C+ Y DC SC G C C GW+G+ C+
Sbjct: 263 YG---CSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCE 319
Query: 384 EAGCPN 389
G P
Sbjct: 320 REGIPR 325
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 338 HCENGWKGPECDIPASDCQYSDCSGHGSCVE--GTCHCQSGWKGIGCQEA--------GC 387
CE GPEC+ + C +G C E G C C G+ G C++A C
Sbjct: 188 RCEAQKWGPECNHLCTACM-----NNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTC 242
Query: 388 PNACNRHGTCAF----ENEEYQCVCAEGWAGVDCN 418
C+ C + Y C CA GW G+ CN
Sbjct: 243 KERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCN 277
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 369 GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
G C C GW+G C+ A C AC G C N +C+C +G+ G C
Sbjct: 408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 276 EIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGG 335
E + ++ A+ ++S C C GKC C G+EG C + C C + GG
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRH-----GG 434
Query: 336 I------CHCENGWKGPECD 349
+ C C+ G+ GP+C+
Sbjct: 435 VCVRPNKCLCKKGYLGPQCE 454
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 369 GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
G C C GW+G C+ A C AC G C N +C+C +G+ G C
Sbjct: 408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 276 EIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGG 335
E + ++ A+ ++S C C GKC C G+EG C + C C + GG
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRH-----GG 434
Query: 336 I------CHCENGWKGPECD 349
+ C C+ G+ GP+C+
Sbjct: 435 VCVRPNKCLCKKGYLGPQCE 454
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 369 GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
G C C GW+G C+ A C AC G C N +C+C +G+ G C
Sbjct: 408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 276 EIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGG 335
E + ++ A+ ++S C C GKC C G+EG C + C C + GG
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRH-----GG 434
Query: 336 I------CHCENGWKGPECD 349
+ C C+ G+ GP+C+
Sbjct: 435 VCVRPNKCLCKKGYLGPQCE 454
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 369 GTCHCQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
G C C GW+G C+ A C AC G C N +C+C +G+ G C
Sbjct: 429 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQC 474
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 276 EIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGGG 335
E + ++ A+ ++S C C GKC C G+EG C + C C + GG
Sbjct: 401 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRH-----GG 455
Query: 336 I------CHCENGWKGPECD 349
+ C C+ G+ GP+C+
Sbjct: 456 VCVRPNKCLCKKGYLGPQCE 475
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 337 CHCENGWKGPECDIPASDCQYSDCSGHGSCV----EGTCHCQSGWKGIGCQ---EAGCPN 389
C C G+ GP C+I ++C + C +C+ E C C G++G+ C+ + +
Sbjct: 28 CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 87
Query: 390 ACNRHGTCAFENEEYQCVCAEGWAG 414
C +G C + E+QC C G+ G
Sbjct: 88 PCLHNGRCLDKINEFQCECPTGFTG 112
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 347 ECDIPASDCQYSDCSGHGSCVEGT----CHCQSGWKGIGCQ---EAGCPNACNRHGTCAF 399
EC + A+ C+++ G C+ C C G+ G C+ N C TC
Sbjct: 5 ECSLGANPCEHA-----GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 59
Query: 400 ENEEYQCVCAEGWAGVDCNIKLE 422
+ E+QC+C G+ GV C + +
Sbjct: 60 QIGEFQCICMPGYEGVHCEVNTD 82
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 305 KCDCIDGYEGTDCSKSVCPVL---CSNHG----KYGGGICHCENGWKGPECDIPASDCQY 357
+C C+ GY G C V + C N + G C C G++G C++ +C
Sbjct: 27 ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 86
Query: 358 SDCSGHGSCV----EGTCHCQSGWKGIGCQ 383
S C +G C+ E C C +G+ G CQ
Sbjct: 87 SPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 360 CSGHGSCVEGTCHCQSGWKGIGCQE 384
CSGHG CV+G+C C W G+ C E
Sbjct: 541 CSGHGRCVQGSCVCDEQWGGLYCDE 565
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 340 ENGWKGPECDIPASDCQYSDCSGHGSCVEGT-CHCQSGWKGIGCQ 383
+N + GP+C+ C GHGSC+ GT C C G+ G C+
Sbjct: 180 DNVYIGPQCE--------EMCYGHGSCINGTKCICDPGYSGPTCK 216
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 287 VSSTCPNGCSGHGSCYLG-KCDCIDGYEGTDCSKSV 321
+ C C GHGSC G KC C GY G C S
Sbjct: 184 IGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKIST 219
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 386 GCPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
GC + C+ HG C + CVC E W G+ C+
Sbjct: 536 GCLDMCSGHGRCV----QGSCVCDEQWGGLYCD 564
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPAS 353
C +CS HG+ G C C+ W G CD P +
Sbjct: 537 CLDMCSGHGRCVQGSCVCDEQWGGLYCDEPET 568
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSK 319
+ C + CSGHG C G C C + + G C +
Sbjct: 533 IGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDE 565
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 360 CSGHGSCVEGTCHCQSGWKGIGCQE 384
CSGHG CV+G+C C W G+ C E
Sbjct: 541 CSGHGRCVQGSCVCDEQWGGLYCDE 565
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 340 ENGWKGPECDIPASDCQYSDCSGHGSCVEGT-CHCQSGWKGIGCQ 383
+N + GP+C+ C GHGSC+ GT C C G+ G C+
Sbjct: 180 DNVYIGPQCE--------EMCYGHGSCINGTKCICDPGYSGPTCK 216
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 287 VSSTCPNGCSGHGSCYLG-KCDCIDGYEGTDCSKSV 321
+ C C GHGSC G KC C GY G C S
Sbjct: 184 IGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKIST 219
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 386 GCPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
GC + C+ HG C + CVC E W G+ C+
Sbjct: 536 GCLDMCSGHGRCV----QGSCVCDEQWGGLYCD 564
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 322 CPVLCSNHGKYGGGICHCENGWKGPECDIPAS 353
C +CS HG+ G C C+ W G CD P +
Sbjct: 537 CLDMCSGHGRCVQGSCVCDEQWGGLYCDEPET 568
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSK 319
+ C + CSGHG C G C C + + G C +
Sbjct: 533 IGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDE 565
>pdb|2KB9|A Chain A, Human Jagged-1, Exon 6
Length = 44
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 373 CQSGWKGIGCQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDCN 418
CQ GW+G+ C + P+ HG C NE +QC+C W G C+
Sbjct: 2 CQYGWQGLYCDKC-IPHPGCVHGIC---NEPWQCLCETNWGGQLCD 43
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
C + CSGHG CVE TC C G+ G+ C++
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 355 CQYSDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
C + CSGHG CVE TC C G+ G+ C++
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|2DDU|A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin
Length = 387
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 287 VSSTCPNGCSGHGSCYLGKCDCIDGY 312
+S CP+ CSGHG C G C C GY
Sbjct: 190 ISEPCPSYCSGHGDCISGVCFCDLGY 215
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 358 SDCSGHGSCVEGTCHCQSGW 377
S CSGHG C+ G C C G+
Sbjct: 196 SYCSGHGDCISGVCFCDLGY 215
>pdb|3FBY|A Chain A, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|B Chain B, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|C Chain C, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein
Length = 551
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 386 GCPNACNRHGTCAFENE-EYQCVCAEGWAG 414
G P+ C+ H C E + CVCA GWAG
Sbjct: 24 GSPSECHEHADCVLERDGSRSCVCAVGWAG 53
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 330 GKYGGGICHCENGWKGPECDIPASDCQYSDCSGHGSCVE----GTCHCQSGWKGIGCQ 383
GK+ CH K + CQ CSGHG CVE TC+C G+ G CQ
Sbjct: 102 GKWNDDACH-----KLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 358 SDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
S C GHG+C++G +C C+SGW+G CQ
Sbjct: 13 SLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR 43
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 358 SDCSGHGSCVEG----TCHCQSGWKGIGCQE 384
S C GHG+C+ G +C C+SGW+G CQ
Sbjct: 20 SLCCGHGTCIXGIGSFSCDCRSGWEGRFCQR 50
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 291 CPNGCSGHGSCYLG----KCDCIDGYEGTDCSKSV 321
C + C GHG+C G CDC G+EG C + V
Sbjct: 18 CASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREV 52
>pdb|2PE4|A Chain A, Structure Of Human Hyaluronidase 1, A Hyaluronan
Hydrolyzing Enzyme Involved In Tumor Growth And
Angiogenesis
Length = 424
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 355 CQYSDCSGHGSCVEGTCHCQSGWK------GIGCQEAGCPNACNRHGTCAFENE-----E 403
C + CSGHG CV T H ++ I G P + G + E++ E
Sbjct: 339 CSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGP--LSLRGALSLEDQAQMAVE 396
Query: 404 YQCVCAEGWAGVDCNIK 420
++C C GW C K
Sbjct: 397 FKCRCYPGWQAPWCERK 413
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
CQ+A CP C G C NE C C +G+ G C
Sbjct: 146 CQQAECPGGCRNGGFC---NERRICECPDGFHGPHC 178
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 269 NDDVKTHEIKLLIKEAEGVS----------------STCPNGCSGHGSCYLGK-CDCIDG 311
D V E+ +++ +EG + + CP GC G C + C+C DG
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDG 172
Query: 312 YEGTDCSKS 320
+ G C +
Sbjct: 173 FHGPHCEGT 181
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 382 CQEAGCPNACNRHGTCAFENEEYQCVCAEGWAGVDC 417
CQ+A CP C G C NE C C +G+ G C
Sbjct: 146 CQQAECPGGCRNGGFC---NERRICECPDGFHGPHC 178
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 269 NDDVKTHEIKLLIKEAEGVS----------------STCPNGCSGHGSCYLGK-CDCIDG 311
D V E+ +++ +EG + + CP GC G C + C+C DG
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDG 172
Query: 312 YEGTDCSKS 320
+ G C +
Sbjct: 173 FHGPHCEGT 181
>pdb|1LK3|L Chain L, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|M Chain M, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 210
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 18/72 (25%)
Query: 275 HEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDGYEGTDCSKSVCPVLCSNHGKYGG 334
+ KLLI +A ++S P SG GS GTD + ++ PV + Y
Sbjct: 41 QQPKLLIYKASNLASGVPARFSGSGS-------------GTDFTLTIDPVEADDTAIY-- 85
Query: 335 GICHCENGWKGP 346
C+ W GP
Sbjct: 86 ---FCQQSWNGP 94
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 389 NACNRHGTCAFENEEYQCVCAEGWAGVDCNI 419
N C TC + E+QC+C G+ GV C I
Sbjct: 8 NPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
>pdb|2P26|A Chain A, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 280
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 325 LCSNHGKYGGGICHCENGWKGPECDIPAS---------DCQYSD----CSGHGSCVEGTC 371
LC G GIC C+ G+ G C+ C+ + CSG G CV G C
Sbjct: 197 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC 256
Query: 372 HCQS 375
C +
Sbjct: 257 LCHT 260
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 255 LKFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDG--- 311
L +L + W S D V+ + I L + E CP G +C I+G
Sbjct: 125 LCYLATIDW--SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNC---PATVINGQFV 179
Query: 312 ---YEGTDCSKSVCPVLCSNHGKYGGGIC 337
+ + C K VCP +C +HG G+C
Sbjct: 180 ERCWTHSHCQK-VCPTICKSHGCTAEGLC 207
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 255 LKFLMSGKWFLSVYNDDVKTHEIKLLIKEAEGVSSTCPNGCSGHGSCYLGKCDCIDG--- 311
L +L + W S D V+ + I L + E CP G +C I+G
Sbjct: 125 LCYLATIDW--SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNC---PATVINGQFV 179
Query: 312 ---YEGTDCSKSVCPVLCSNHGKYGGGIC 337
+ + C K VCP +C +HG G+C
Sbjct: 180 ERCWTHSHCQK-VCPTICKSHGCTAEGLC 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,719,895
Number of Sequences: 62578
Number of extensions: 667283
Number of successful extensions: 2073
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 327
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)